Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b #22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b #22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b #22
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b #22
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT01100000263482.A.a.a.d.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095 #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b #22	ENSGT00940000155206.d ##22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT01100000263482.C.c.b.a.b.a ##36	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.b.a.b #34
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT01100000263482.A.a.a.d.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095 #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT01100000263482.C.c.b.a.b.a ##36	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b #34
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	1	ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095 #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b #34	ENSGT01100000263482.C.c.b.b.a.a #35
Percora_a	ANCESTRAL SPECIES	2	ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b #34	ENSGT01100000263482.C.c.b.b.a.a #35
Bovidae	ANCESTRAL SPECIES	2	ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b #34	ENSGT01100000263482.C.c.b.b.a.a #35
Caprinae	ANCESTRAL SPECIES	1	ENSGT01100000263482.A.a.a.d.a.a.b ##36	ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b.k #34	ENSGT01100000263482.C.c.b.b.a.a #35	ENSGT01100000263482.C.c.a #36	ENSGT00530000064879.a.a.a #37
Rambouillet Sheep	MODERN SPECIES	2	CCL1 (ENSOARG00020017691) #7	TMEM132E (ENSOARG00020017730) #8	CCT6B (ENSOARG00020018028) #9	ZNF830 (ENSOARG00020018540) #10	LIG3 (ENSOARG00020018561) #11	RFFL (ENSOARG00020018710) #12	ENSOARG00020018814 #13	FNDC8 (ENSOARG00020018903) #14	ENSOARG00020018949 #15	ENSOARG00020018986 #16	UNC45B (ENSOARG00020019061) #17	ENSOARG00020019677 #18	ENSOARG00020019723 #19	SLFN14 (ENSOARG00020019977) #20	PEX12 (ENSOARG00020020025) #21	AP2B1 (ENSOARG00020020066) #22	ENSOARG00020020386 #23	RASL10B (ENSOARG00020020400) #24	C17orf50 (ENSOARG00020020706) #25	MMP28 (ENSOARG00020020795) #26	TAF15 (ENSOARG00020020914) #27	HEATR9 (ENSOARG00020021381) #28	ENSOARG00020021566 #29	CCL16 (ENSOARG00020021594) #30	CCL14 (ENSOARG00020021620) #31	ENSOARG00020021658 #32	ENSOARG00020021698 #33	ENSOARG00020021729 #34	ENSOARG00020021765 #35	ENSOARG00020021814 #36	ENSOARG00020021888 #37
Goat	MODERN SPECIES	10	CCL11 (ENSCHIG00000012968) ##36	CCL8 (ENSCHIG00000020074) ##36	ENSCHIG00000002408	TMEM132E (ENSCHIG00000015468) #8	CCT6B (ENSCHIG00000023739) #9	ZNF830 (ENSCHIG00000012740) #10	LIG3 (ENSCHIG00000023884) #11	RFFL (ENSCHIG00000012667) #12	ENSCHIG00000019605 #13	FNDC8 (ENSCHIG00000027164) #14	NLE1 (ENSCHIG00000012536) #16	UNC45B (ENSCHIG00000018294) #17	ENSCHIG00000026701 ##20	SLFN14 (ENSCHIG00000026874) #20	PEX12 (ENSCHIG00000025650) #21	ENSCHIG00000019283 #22	RASL10B (ENSCHIG00000018183) #24	GAS2L2 (ENSCHIG00000026688)	C17orf50 (ENSCHIG00000018412) #25	MMP28 (ENSCHIG00000027070) #26	ENSCHIG00000027235 #27	HEATR9 (ENSCHIG00000021394) #28	ENSCHIG00000016688 #29	ENSCHIG00000004359	CCL14 (ENSCHIG00000015200) #31	ENSCHIG00000021417 #32	ENSCHIG00000003747 #34	ENSCHIG00000017081 #35	ENSCHIG00000026450 #36	ENSCHIG00000014748 ##36	ENSCHIG00000017931
Bovinae	ANCESTRAL SPECIES		ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b #34	ENSGT01100000263482.C.c.b.b.a.a #35
Bos	ANCESTRAL SPECIES	1	ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b.n #34	ENSGT00990000211580
Bos_a	ANCESTRAL SPECIES		ENSGT01100000263482.A.a.a.d.a.b ##36	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00940000154849.a	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT00390000004871.a	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b.m.a #34
Wild yak	MODERN SPECIES	1117	ENSBMUG00000013512 ##36	CCL1 (ENSBMUG00000013488) #7	TMEM132E (ENSBMUG00000013479) #8	CCT6B (ENSBMUG00000013437) #9	ZNF830 (ENSBMUG00000013328) #10	LIG3 (ENSBMUG00000013309) #11	RFFL (ENSBMUG00000013239) #12	RAD51D (ENSBMUG00000013181) #13	FNDC8 (ENSBMUG00000013103) #14	NLE1 (ENSBMUG00000013085) #16	UNC45B (ENSBMUG00000013040) #17	ENSBMUG00000012916 #19	ENSBMUG00000012900 ##20	SLFN14 (ENSBMUG00000012865) #20	PEX12 (ENSBMUG00000012839) #21	ENSBMUG00000012814 #22	RASL10B (ENSBMUG00000012740) #24	ENSBMUG00000012734	ENSBMUG00000012720	C17orf50 (ENSBMUG00000012713) #25	ENSBMUG00000012696	MMP28 (ENSBMUG00000012687) #26	TAF15 (ENSBMUG00000012646) #27	HEATR9 (ENSBMUG00000012616) #28	ENSBMUG00000012590 #29	ENSBMUG00000012580	CCL16 (ENSBMUG00000012569) #30	CCL14 (ENSBMUG00000012564) #31	ENSBMUG00000012558	ENSBMUG00000012547 #32	ENSBMUG00000012533 #33
Domestic yak	MODERN SPECIES	10	ENSBGRG00000020373 ##36	ENSBGRG00000020420	TMEM132E (ENSBGRG00000020451) #8	CCT6B (ENSBGRG00000020692) #9	ZNF830 (ENSBGRG00000021136) #10	LIG3 (ENSBGRG00000021180) #11	RFFL (ENSBGRG00000021399) #12	ENSBGRG00000021490 ##13	FNDC8 (ENSBGRG00000021652) #14	NLE1 (ENSBGRG00000021708) #16	UNC45B (ENSBGRG00000022051) #17	ENSBGRG00000022720 #19	ENSBGRG00000022760 ##20	SLFN14 (ENSBGRG00000022772) #20	PEX12 (ENSBGRG00000022808) #21	ENSBGRG00000022860 #22	RASL10B (ENSBGRG00000023043) #24	GAS2L2 (ENSBGRG00000023089)	C17orf50 (ENSBGRG00000023233) #25	MMP28 (ENSBGRG00000023311) #26	ENSBGRG00000023398	HEATR9 (ENSBGRG00000023535) #28	ENSBGRG00000023713 #29	ENSBGRG00000023731	CCL16 (ENSBGRG00000023749) #30	CCL14 (ENSBGRG00000023792) #31	ENSBGRG00000023865 #32	ENSBGRG00000023893	ENSBGRG00000024021 #34	ENSBGRG00000010840 #35	ENSBGRG00000010946 #36
Bos_b	ANCESTRAL SPECIES	38	ENSGT01030000234760	ENSGT00940000158479 #8	ENSGT00940000156339 #9	ENSGT00390000012151 #10	ENSGT00940000156492 #11	ENSGT00390000012719.a #12	ENSGT00940000159095.c.a #13	ENSGT00390000006458 #14	ENSGT00940000157881 #16	ENSGT00940000157654 #17	ENSGT00410000025651.A.b.a.a.b #19	ENSGT01100000263480.a.b.a.b.b.b.b.a.a	ENSGT00410000025651.A.b.a.a.a.a ##20	ENSGT00410000025651.A.b.b #20	ENSGT00390000016209 #21	ENSGT00940000155206.c.b.a #22	ENSGT00940000160764 #24	ENSGT00940000162866	ENSGT00390000007830 #25	ENSGT00940000159596 #26	ENSGT00940000156438 #27	ENSGT00390000007247 #28	ENSGT01100000263482.D #29	ENSGT01100000263482.B #30	ENSGT01100000263482.C.c.b.a.b.b #31	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a.b #32	ENSGT01100000263482.C.c.b.b.a.b.m.b #34	ENSGT01100000263482.C.c.b.a.a.a #33	ENSGT01100000263482.C.c.b.b.a.b.n #34	ENSGT01100000263482.C.c.b.b.a.a #35
Cow	MODERN SPECIES	10	CCL1 (ENSBTAG00000008832)	TMEM132E (ENSBTAG00000002680) #8	CCT6B (ENSBTAG00000020338) #9	ZNF830 (ENSBTAG00000020340) #10	LIG3 (ENSBTAG00000018689) #11	RFFL (ENSBTAG00000013645) #12	RAD51D (ENSBTAG00000019082) #13	FNDC8 (ENSBTAG00000019092) #14	NLE1 (ENSBTAG00000019094) #16	UNC45B (ENSBTAG00000002898) #17	ENSBTAG00000025219 #19	ENSBTAG00000051396	ENSBTAG00000019437 ##20	SLFN14 (ENSBTAG00000039206) #20	PEX12 (ENSBTAG00000019723) #21	AP2B1 (ENSBTAG00000020316) #22	RASL10B (ENSBTAG00000018518) #24	GAS2L2 (ENSBTAG00000018519)	C19H17orf50 (ENSBTAG00000045621) #25	MMP28 (ENSBTAG00000006086) #26	TAF15 (ENSBTAG00000006916)	HEATR9 (ENSBTAG00000002850) #28	CCL5 (ENSBTAG00000053649) #29	CCL16 (ENSBTAG00000053578) #30	CCL14 (ENSBTAG00000010738) #31	ENSBTAG00000048980	ENSBTAG00000010155 #32	ENSBTAG00000048626 #33	ENSBTAG00000003289 #34	ENSBTAG00000051377	CCL4 (ENSBTAG00000025257) #36
Hybrid Bos Indicus	MODERN SPECIES	10	ENSBIXG00005003275	TMEM132E (ENSBIXG00005003295) #8	CCT6B (ENSBIXG00005020356) #9	ZNF830 (ENSBIXG00005000019) #10	LIG3 (ENSBIXG00005020425) #11	RFFL (ENSBIXG00005020511) #12	RAD51D (ENSBIXG00005007727) #13	FNDC8 (ENSBIXG00005020624) #14	NLE1 (ENSBIXG00005020696) #16	UNC45B (ENSBIXG00005020949) #17	ENSBIXG00005003547 #19	ENSBIXG00005021013	ENSBIXG00005021034 ##20	SLFN14 (ENSBIXG00005021050) #20	PEX12 (ENSBIXG00005021083) #21	ENSBIXG00005021182 #22	RASL10B (ENSBIXG00005021225) #24	GAS2L2 (ENSBIXG00005021333)	C17orf50 (ENSBIXG00005007305) #25	MMP28 (ENSBIXG00005021408) #26	TAF15 (ENSBIXG00005021454) #27	HEATR9 (ENSBIXG00005007371) #28	ENSBIXG00005021593 #29	CCL16 (ENSBIXG00005021613) #30	ENSBIXG00005021642 #31	ENSBIXG00005003651	ENSBIXG00005021684 #32	ENSBIXG00005021705 #34	ENSBIXG00005021738 #33	ENSBIXG00005021752	ENSBIXG00005021800 #36
American bison	MODERN SPECIES	3331	CCL11 (ENSBBBG00000015529) ##36	ENSBBBG00000015515 ##36	TMEM132E (ENSBBBG00000003856) #8	CCT6B (ENSBBBG00000015432) #9	ZNF830 (ENSBBBG00000003814) #10	LIG3 (ENSBBBG00000003485) #11	RFFL (ENSBBBG00000001330) #12	RAD51D (ENSBBBG00000015308) #13	FNDC8 (ENSBBBG00000015233) #14	NLE1 (ENSBBBG00000003521) #16	UNC45B (ENSBBBG00000003753) #17	ENSBBBG00000000800 #19	ENSBBBG00000015007 ##20	SLFN14 (ENSBBBG00000003718) #20	PEX12 (ENSBBBG00000014984) #21	ENSBBBG00000014960 #22	RASL10B (ENSBBBG00000000919) #24	GAS2L2 (ENSBBBG00000000929)	MMP28 (ENSBBBG00000000966) #26	TAF15 (ENSBBBG00000000998) #27	HEATR9 (ENSBBBG00000001077) #28	ENSBBBG00000001120 #29	CCL16 (ENSBBBG00000001142) #30	CCL14 (ENSBBBG00000001153) #31	ENSBBBG00000001168	ENSBBBG00000001180 #33	ENSBBBG00000001231 #35	ENSBBBG00000003679 #36	ENSBBBG00000014876	ENSBBBG00000014865 ##37	ENSBBBG00000003664 ##37
Siberian musk deer	MODERN SPECIES	1135	CCL1 (ENSMMSG00000013764) #7	ENSMMSG00000013748	TMEM132E (ENSMMSG00000013674) #8	CCT6B (ENSMMSG00000013474) #9	ZNF830 (ENSMMSG00000013439) #10	LIG3 (ENSMMSG00000013344) #11	RFFL (ENSMMSG00000013303) #12	ENSMMSG00000013244 ##13	FNDC8 (ENSMMSG00000013206) #14	NLE1 (ENSMMSG00000013105) #16	UNC45B (ENSMMSG00000012816) #17	ENSMMSG00000012754 #19	ENSMMSG00000012719 ##20	SLFN14 (ENSMMSG00000012689) #20	PEX12 (ENSMMSG00000012661) #21	ENSMMSG00000012554 #22	RASL10B (ENSMMSG00000012523) #24	GAS2L2 (ENSMMSG00000012477)	C17orf50 (ENSMMSG00000012439) #25	MMP28 (ENSMMSG00000012400) #26	TAF15 (ENSMMSG00000012333) #27	HEATR9 (ENSMMSG00000012236) #28	ENSMMSG00000012217 #29	ENSMMSG00000012206 #30	ENSMMSG00000012185 #31	ENSMMSG00000012172	ENSMMSG00000012162 #32	ENSMMSG00000012140	ENSMMSG00000012133 #35	ENSMMSG00000012107 #36	ENSMMSG00000012084 #37
Yarkand deer	MODERN SPECIES	28	CCL2 (ENSCHYG00000004987) ##36	CCL11 (ENSCHYG00000004959) ##36	ENSCHYG00000004663 ##36	ENSCHYG00000004652	TMEM132E (ENSCHYG00000004615) #8	CCT6B (ENSCHYG00000004528) #9	ZNF830 (ENSCHYG00000004488) #10	LIG3 (ENSCHYG00000004420) #11	ENSCHYG00000004295 #13	FNDC8 (ENSCHYG00000004217) #14	NLE1 (ENSCHYG00000004131) #16	UNC45B (ENSCHYG00000004023) #17	ENSCHYG00000003986 #19	SLFN14 (ENSCHYG00000003977) #20	PEX12 (ENSCHYG00000003961) #21	ENSCHYG00000003898 #22	RASL10B (ENSCHYG00000003865) #24	GAS2L2 (ENSCHYG00000003847)	C17orf50 (ENSCHYG00000003832) #25	MMP28 (ENSCHYG00000003809) #26	TAF15 (ENSCHYG00000003703) #27	HEATR9 (ENSCHYG00000003637) #28	ENSCHYG00000003613 #29	CCL16 (ENSCHYG00000003598) #30	CCL14 (ENSCHYG00000003585) #31	ENSCHYG00000003559	ENSCHYG00000003542 #33	ENSCHYG00000003533 #34	ENSCHYG00000003522 #35	ENSCHYG00000003511 #36	ENSCHYG00000003496 #37
Pecora	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b.b ##22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b.b ##22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000155206.c.b.b ##22
Bos	ANCESTRAL SPECIES	19	ENSGT00940000155695	ENSGT00950000186448	ENSGT00960000190646	ENSGT00390000004766	ENSGT00940000154798.a.d.a	ENSGT00390000004856.w.a.a.b.b.a.b.a	ENSGT00530000063426.b.b	ENSGT00390000002563.b.a.a	ENSGT00390000002563.a	ENSGT00940000153295.b	ENSGT00940000155839	ENSGT00940000155610	ENSGT00940000155377	ENSGT00940000156143	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b ##22	ENSGT00940000154272.A	ENSGT00940000160200	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625	ENSGT00940000164601.e	ENSGT00940000157719	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A	ENSGT00940000155184	ENSGT00940000162208	ENSGT00390000011769	ENSGT00940000157179	ENSGT00390000001627.a	ENSGT00950000183001.a.b.a
Bos_a	ANCESTRAL SPECIES	18	ENSGT00880000138028.b.b	ENSGT00940000155695	ENSGT00390000004766	ENSGT00940000154798.a.d.a	ENSGT00390000004856.w.a.a.b.b.a.b.a	ENSGT00530000063426.b.b	ENSGT00390000002563.b.a.a	ENSGT00390000002563.a	ENSGT00940000153295.b	ENSGT00940000155839	ENSGT00940000155610	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.b	ENSGT00940000155377	ENSGT00940000156143	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b ##22	ENSGT00940000154272.A	ENSGT00940000160200	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625	ENSGT00940000164932	ENSGT00940000157719	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A	ENSGT00940000155184	ENSGT00940000162208	ENSGT00390000011769	ENSGT00940000157179	ENSGT00390000001627.a	ENSGT00950000183001.a.b.a
Domestic yak	MODERN SPECIES	1	ENSBGRG00000005152	ENSBGRG00000005146	ENSBGRG00000005140	PREP (ENSBGRG00000005031)	POPDC3 (ENSBGRG00000005006)	BVES (ENSBGRG00000004850)	LIN28B (ENSBGRG00000004803)	ENSBGRG00000004777	HACE1 (ENSBGRG00000004127)	ENSBGRG00000004076	ENSBGRG00000004053	GRIK2 (ENSBGRG00000003805)	ASCC3 (ENSBGRG00000003723)	SIM1 (ENSBGRG00000003658)	ENSBGRG00000003627	ENSBGRG00000003604 ##22	ENSBGRG00000003594	ENSBGRG00000003580	PRDM13 (ENSBGRG00000026581)	ENSBGRG00000026578	ENSBGRG00000026554	TSTD3 (ENSBGRG00000026535)	USP45 (ENSBGRG00000026528)	PNISR (ENSBGRG00000026524)	COQ3 (ENSBGRG00000026518)	FAXC (ENSBGRG00000026514)	FBXL4 (ENSBGRG00000026508)	POU3F2 (ENSBGRG00000026502)	ENSBGRG00000026495	MMS22L (ENSBGRG00000026462)	KLHL32 (ENSBGRG00000026432)
Wild yak	MODERN SPECIES	1440													ASCC3 (ENSBMUG00000025567)	SIM1 (ENSBMUG00000025561)	ENSBMUG00000025556	ENSBMUG00000025553 ##22	MCHR2 (ENSBMUG00000025547)	PRDM13 (ENSBMUG00000025544)	ENSBMUG00000025541	ENSBMUG00000025528	TSTD3 (ENSBMUG00000025494)	USP45 (ENSBMUG00000025490)	PNISR (ENSBMUG00000025486)	COQ3 (ENSBMUG00000025485)	FAXC (ENSBMUG00000025484)	FBXL4 (ENSBMUG00000025478)	ENSBMUG00000025474
Bos_b	ANCESTRAL SPECIES	24	ENSGT00880000138028.b.b	ENSGT00940000155695	ENSGT00390000004766	ENSGT00940000154798.a.d.a	ENSGT00530000063426.b.b	ENSGT00390000002563.b.a.a	ENSGT00390000002563.a	ENSGT00940000153295.b	ENSGT00940000155839	ENSGT01100000263481.n.a.a.a.a.a.b.b.b	ENSGT01030000236423	ENSGT00940000155610	ENSGT00940000155377	ENSGT00940000156143	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000155206.c.b.b ##22	ENSGT00940000154272.A	ENSGT00940000160200	ENSGT00940000154550.a.e.b.b	ENSGT00940000155625	ENSGT00940000164601.e	ENSGT00940000157719	ENSGT00730000111138	ENSGT00390000007284	ENSGT00950000182919.A	ENSGT00940000155184	ENSGT00940000162208	ENSGT00390000011769	ENSGT00940000157179	ENSGT00390000001627.a	ENSGT00950000183001.a.b.a
Cow	MODERN SPECIES	28	CRYBG1 (ENSBTAG00000017527)	ENSBTAG00000052057	ATG5 (ENSBTAG00000005400)	PRDM1 (ENSBTAG00000000816)	PREP (ENSBTAG00000016281)	POPDC3 (ENSBTAG00000046017)	BVES (ENSBTAG00000018790)	LIN28B (ENSBTAG00000043973)	HACE1 (ENSBTAG00000001533)	ENSBTAG00000051738	ENSBTAG00000053858	GRIK2 (ENSBTAG00000033153)	ASCC3 (ENSBTAG00000020482)	SIM1 (ENSBTAG00000002294)	ENSBTAG00000014104	ENSBTAG00000052778 ##22	MCHR2 (ENSBTAG00000005449)	PRDM13 (ENSBTAG00000006095)	ENSBTAG00000054078	CCNC (ENSBTAG00000015744)	USP45 (ENSBTAG00000018528)	TSTD3 (ENSBTAG00000038931)	PNISR (ENSBTAG00000019730)	COQ3 (ENSBTAG00000019729)	FAXC (ENSBTAG00000044061)	FBXL4 (ENSBTAG00000005729)	POU3F2 (ENSBTAG00000024773)	MMS22L (ENSBTAG00000000629)	KLHL32 (ENSBTAG00000005301)	NDUFAF4 (ENSBTAG00000003174)	GPR63 (ENSBTAG00000002915)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005029830	ENSBIXG00005029840	PREP (ENSBIXG00005029865)	POPDC3 (ENSBIXG00005029917)	BVES (ENSBIXG00005029927)	ENSBIXG00005029941	LIN28B (ENSBIXG00005029958)	HACE1 (ENSBIXG00005030042)	ENSBIXG00005030149	ENSBIXG00005030156	ENSBIXG00005030182	GRIK2 (ENSBIXG00005030262)	ASCC3 (ENSBIXG00005030349)	SIM1 (ENSBIXG00005030367)	ENSBIXG00005030383	ENSBIXG00005030391 ##22	MCHR2 (ENSBIXG00005030398)	PRDM13 (ENSBIXG00005030415)	ENSBIXG00005030422	ENSBIXG00005030448	ENSBIXG00005030467	USP45 (ENSBIXG00005030475)	PNISR (ENSBIXG00005030498)	COQ3 (ENSBIXG00005030514)	FAXC (ENSBIXG00005030527)	FBXL4 (ENSBIXG00005030544)	POU3F2 (ENSBIXG00005030555)	MMS22L (ENSBIXG00005030633)	KLHL32 (ENSBIXG00005030681)	NDUFAF4 (ENSBIXG00005030722)	GPR63 (ENSBIXG00005030728)
Yarkand deer	MODERN SPECIES	20	CRYBG1 (ENSCHYG00000022057)	ATG5 (ENSCHYG00000022719)	PRDM1 (ENSCHYG00000022882)	PREP (ENSCHYG00000023040)	ENSCHYG00000023289	POPDC3 (ENSCHYG00000023314)	BVES (ENSCHYG00000023334)	LIN28B (ENSCHYG00000023383)	HACE1 (ENSCHYG00000023545)	ENSCHYG00000024260	ENSCHYG00000024278	ENSCHYG00000024291	GRIK2 (ENSCHYG00000024358)	ASCC3 (ENSCHYG00000024791)	SIM1 (ENSCHYG00000024834)	ENSCHYG00000024861 ##22	PRDM13 (ENSCHYG00000024927)	ENSCHYG00000024960	CCNC (ENSCHYG00000025007)	TSTD3 (ENSCHYG00000025097)	USP45 (ENSCHYG00000025122)	PNISR (ENSCHYG00000025150)	COQ3 (ENSCHYG00000025175)	FAXC (ENSCHYG00000025221)	FBXL4 (ENSCHYG00000025242)	POU3F2 (ENSCHYG00000025261)	MMS22L (ENSCHYG00000025279)	KLHL32 (ENSCHYG00000025369)	NDUFAF4 (ENSCHYG00000025688)	FHL5 (ENSCHYG00000025707)	UFL1 (ENSCHYG00000025727)