Rodentia_A ANCESTRAL SPECIES 14 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab ENSGT00390000009189 ENSGT00860000135288 ENSGT00950000182836.a ENSGT00940000160921 ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808 #21 ENSGT01050000245125 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 ENSGT00940000160736 Hystricomorpha ANCESTRAL SPECIES 8 ENSGT00940000156217 ENSGT00390000002768 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000160921 ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808 #21 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 ENSGT00940000160736 Hystricomorpha_a ANCESTRAL SPECIES 31 ENSGT00940000156217 ENSGT00390000002768 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000160921 ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808 #21 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 ENSGT00940000160736 Hystricomorpha_b ANCESTRAL SPECIES 26 ENSGT00390000004254 ENSGT00940000156217 ENSGT00390000002768 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab ENSGT00390000009189 ENSGT00950000182836.a ENSGT00940000160921 ENSGT00940000158182 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808 #21 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 ENSGT00940000160736 Long-tailed chinchilla MODERN SPECIES 148 SRD5A2 (ENSCLAG00000004854) #19 MEMO1 (ENSCLAG00000004990) #20 DPY30 (ENSCLAG00000005066) #21 SPAST (ENSCLAG00000005426) #22 SLC30A6 (ENSCLAG00000005442) #23 NLRC4 (ENSCLAG00000005687) #24 YIPF4 (ENSCLAG00000006034) #25 ENSCLAG00000006069 #26 BIRC6 (ENSCLAG00000006515) #27 TTC27 (ENSCLAG00000003463) #28 LTBP1 (ENSCLAG00000003769) #29 RASGRP3 (ENSCLAG00000004010) #30 FAM98A (ENSCLAG00000004259) #31 CRIM1 (ENSCLAG00000006586) #32 ENSCLAG00000006903 #33 VIT (ENSCLAG00000006993) #34 STRN (ENSCLAG00000007211) #35 HEATR5B (ENSCLAG00000007347) #36 GPATCH11 (ENSCLAG00000008061) #37 Degu MODERN SPECIES 61 ENSODEG00000010284 #20 ENSODEG00000009012 #21 SPAST (ENSODEG00000009753) #22 SLC30A6 (ENSODEG00000008632) #23 NLRC4 (ENSODEG00000010692) #24 YIPF4 (ENSODEG00000008923) #25 BIRC6 (ENSODEG00000008966) #27 TTC27 (ENSODEG00000010290) #28 LTBP1 (ENSODEG00000009508) #29 ENSODEG00000012474 RASGRP3 (ENSODEG00000010417) #30 CRIM1 (ENSODEG00000011072) #32 FEZ2 (ENSODEG00000011376) #33 VIT (ENSODEG00000012033) #34 STRN (ENSODEG00000009292) #35 HEATR5B (ENSODEG00000009045) #36 GPATCH11 (ENSODEG00000011404) #37 ENSODEG00000019711 Guinea pig MODERN SPECIES 18 PCARE (ENSCPOG00000004688) CLIP4 (ENSCPOG00000008221) ALK (ENSCPOG00000008234) YPEL5 (ENSCPOG00000033007) LBH (ENSCPOG00000037436) LCLAT1 (ENSCPOG00000035779) CAPN13 (ENSCPOG00000004800) GALNT14 (ENSCPOG00000004020) ENSCPOG00000026094 EHD3 (ENSCPOG00000034108) XDH (ENSCPOG00000005074) SRD5A2 (ENSCPOG00000023716) #19 ENSCPOG00000025603 MEMO1 (ENSCPOG00000012278) #20 DPY30 (ENSCPOG00000006349) #21 SPAST (ENSCPOG00000008815) #22 SLC30A6 (ENSCPOG00000036174) #23 NLRC4 (ENSCPOG00000008148) #24 YIPF4 (ENSCPOG00000037032) #25 BIRC6 (ENSCPOG00000013371) #27 TTC27 (ENSCPOG00000000166) #28 LTBP1 (ENSCPOG00000007011) #29 RASGRP3 (ENSCPOG00000002062) #30 FAM98A (ENSCPOG00000002065) #31 ENSCPOG00000019281 CRIM1 (ENSCPOG00000009397) #32 FEZ2 (ENSCPOG00000009413) #33 VIT (ENSCPOG00000012173) #34 STRN (ENSCPOG00000012176) #35 HEATR5B (ENSCPOG00000012179) #36 GPATCH11 (ENSCPOG00000012194) #37 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES ENSHGLG00000036959 ENSHGLG00000005635 ENSHGLG00000015696 ENSHGLG00000046490 ENSHGLG00000018616 ENSHGLG00000005838 ENSHGLG00000047269 ENSHGLG00000045599 ENSHGLG00000010248 ENSHGLG00000006743 ENSHGLG00000047366 ENSHGLG00000007740 ENSHGLG00000013408 ENSHGLG00000037255 ENSHGLG00000012970 ENSHGLG00000015548 #22 ENSHGLG00000015772 ENSHGLG00000037489 ENSHGLG00000017258 PDGFA (ENSHGLG00000048877) PRKAR1B (ENSHGLG00000014913) DNAAF5 (ENSHGLG00000013235) ENSHGLG00000046473 ENSHGLG00000034562 SUN1 (ENSHGLG00000009193) ENSHGLG00000035428 ENSHGLG00000006985 ADAP1 (ENSHGLG00000045392) COX19 (ENSHGLG00000042958) CYP2W1 (ENSHGLG00000010718) C7orf50 (ENSHGLG00000042404) Naked mole-rat female MODERN SPECIES 23 ENSHGLG00000013620 ALK (ENSHGLG00000009536) YPEL5 (ENSHGLG00000047773) ENSHGLG00000047172 ENSHGLG00000035440 LCLAT1 (ENSHGLG00000044937) CAPN13 (ENSHGLG00000014085) GALNT14 (ENSHGLG00000015234) CAPN14 (ENSHGLG00000011004) EHD3 (ENSHGLG00000014803) XDH (ENSHGLG00000013979) SRD5A2 (ENSHGLG00000047600) #19 ENSHGLG00000018935 #20 DPY30 (ENSHGLG00000013219) #21 ENSHGLG00000033496 SPAST (ENSHGLG00000005503) #22 SLC30A6 (ENSHGLG00000007024) #23 NLRC4 (ENSHGLG00000005309) #24 ENSHGLG00000009004 ENSHGLG00000020491 YIPF4 (ENSHGLG00000008283) #25 ENSHGLG00000047170 BIRC6 (ENSHGLG00000006871) #27 ENSHGLG00000015688 ENSHGLG00000015184 #28 ENSHGLG00000015265 ENSHGLG00000033660 ENSHGLG00000034734 ENSHGLG00000013628 #29 ENSHGLG00000047365 ENSHGLG00000017850 Sciuridae ANCESTRAL SPECIES 16 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab ENSGT00390000009189 ENSGT00860000135288 ENSGT00950000182836.a ENSGT00940000160921 ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808 #21 ENSGT01050000245125 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 ENSGT00940000160736 Marmotini ANCESTRAL SPECIES 14 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab.a.a ENSGT00390000009189 ENSGT00860000135288 ENSGT00950000182836.a ENSGT00940000160921.a ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808.c #21 ENSGT01050000245125 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00390000006305.f ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 ENSGT00940000160910 #32 ENSGT00390000017627.a #33 ENSGT00940000159330 #34 ENSGT00950000183095.a.b.a.b.b #35 ENSGT00390000006205.a #36 ENSGT00440000039029 #37 Marmotini_b ANCESTRAL SPECIES 17 ENSGT00940000157706 ENSGT00940000159280 ENSGT00940000154800.ab.a.a ENSGT00390000009189 ENSGT00860000135288 ENSGT00950000182836.a ENSGT00940000160921.a ENSGT00940000158182 ENSGT00940000160421 ENSGT00940000159274 ENSGT00950000183114.a.a ENSGT00950000182886.b.a #19 ENSGT00390000006408 #20 ENSGT00390000008808.c #21 ENSGT01050000245125 ENSGT00940000156258 #22 ENSGT00940000159934 #23 ENSGT00940000161744 #24 ENSGT00940000153168.B #25 ENSGT00940000156126 #27 ENSGT00390000006305.f ENSGT00500000044929 #28 ENSGT00940000155823.B #29 ENSGT00940000158843 #30 ENSGT00440000037341.a #31 Arctic ground squirrel MODERN SPECIES CLIP4 (ENSUPAG00010005300) ALK (ENSUPAG00010002138) ENSUPAG00010002108 LBH (ENSUPAG00010002100) ENSUPAG00010002092 LCLAT1 (ENSUPAG00010002080) CAPN13 (ENSUPAG00010002040) ENSUPAG00010002033 GALNT14 (ENSUPAG00010001997) EHD3 (ENSUPAG00010001987) XDH (ENSUPAG00010001959) SRD5A2 (ENSUPAG00010001940) #19 MEMO1 (ENSUPAG00010001812) #20 ENSUPAG00010001753 #21 ENSUPAG00010001748 SPAST (ENSUPAG00010001625) #22 ENSUPAG00010001616 SLC30A6 (ENSUPAG00010001566) #23 NLRC4 (ENSUPAG00010001525) #24 YIPF4 (ENSUPAG00010001510) #25 BIRC6 (ENSUPAG00010000246) #27 ENSUPAG00010000225 TTC27 (ENSUPAG00010000115) #28 LTBP1 (ENSUPAG00010000004) #29 RASGRP3 (ENSUPAG00010000003) #30 FAM98A (ENSUPAG00010000002) #31 Squirrel MODERN SPECIES 93 TOGARAM2 (ENSSTOG00000015741) PCARE (ENSSTOG00000020236) CLIP4 (ENSSTOG00000002788) ALK (ENSSTOG00000002811) ENSSTOG00000021506 LBH (ENSSTOG00000032299) LCLAT1 (ENSSTOG00000004703) CAPN13 (ENSSTOG00000011438) GALNT14 (ENSSTOG00000012135) CAPN14 (ENSSTOG00000021907) EHD3 (ENSSTOG00000028279) XDH (ENSSTOG00000012152) SRD5A2 (ENSSTOG00000028843) #19 MEMO1 (ENSSTOG00000002828) #20 DPY30 (ENSSTOG00000013372) #21 SPAST (ENSSTOG00000019363) #22 SLC30A6 (ENSSTOG00000002286) #23 NLRC4 (ENSSTOG00000026976) #24 YIPF4 (ENSSTOG00000012128) #25 BIRC6 (ENSSTOG00000028422) #27 ENSSTOG00000031910 TTC27 (ENSSTOG00000027305) #28 LTBP1 (ENSSTOG00000011543) #29 RASGRP3 (ENSSTOG00000010471) #30 FAM98A (ENSSTOG00000010483) #31 Alpin marmot MODERN SPECIES 6 PCARE (ENSMMMG00000019967) CLIP4 (ENSMMMG00000019892) ENSMMMG00000019887 ALK (ENSMMMG00000019224) YPEL5 (ENSMMMG00000019115) LBH (ENSMMMG00000019111) ENSMMMG00000019108 LCLAT1 (ENSMMMG00000019092) ENSMMMG00000019074 GALNT14 (ENSMMMG00000019041) EHD3 (ENSMMMG00000018998) XDH (ENSMMMG00000018970) SRD5A2 (ENSMMMG00000018968) #19 MEMO1 (ENSMMMG00000018930) #20 ENSMMMG00000018887 #21 SPAST (ENSMMMG00000018838) #22 SLC30A6 (ENSMMMG00000018819) #23 NLRC4 (ENSMMMG00000018816) #24 YIPF4 (ENSMMMG00000018753) #25 BIRC6 (ENSMMMG00000018677) #27 ENSMMMG00000018644 TTC27 (ENSMMMG00000018618) #28 LTBP1 (ENSMMMG00000018556) #29 RASGRP3 (ENSMMMG00000018522) #30 FAM98A (ENSMMMG00000018506) #31 CRIM1 (ENSMMMG00000018434) #32 FEZ2 (ENSMMMG00000018399) #33 VIT (ENSMMMG00000018350) #34 STRN (ENSMMMG00000017653) #35 HEATR5B (ENSMMMG00000017586) #36 GPATCH11 (ENSMMMG00000017576) #37 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 5 YPEL5 (ENSSVLG00005025180) ENSSVLG00005025165 LBH (ENSSVLG00005025129) ENSSVLG00005025102 LCLAT1 (ENSSVLG00005025084) CAPN13 (ENSSVLG00005025044) ENSSVLG00005025015 GALNT14 (ENSSVLG00005024988) CAPN14 (ENSSVLG00005024950) EHD3 (ENSSVLG00005024888) XDH (ENSSVLG00005024759) SRD5A2 (ENSSVLG00005024728) #19 MEMO1 (ENSSVLG00005024673) #20 DPY30 (ENSSVLG00005024637) #21 ENSSVLG00005024614 ENSSVLG00005024266 #22 SLC30A6 (ENSSVLG00005024101) #23 NLRC4 (ENSSVLG00005024010) #24 YIPF4 (ENSSVLG00005023974) #25 BIRC6 (ENSSVLG00005021693) #27 TTC27 (ENSSVLG00005021475) #28 LTBP1 (ENSSVLG00005020250) #29 RASGRP3 (ENSSVLG00005020068) #30 FAM98A (ENSSVLG00005019999) #31 ENSSVLG00005019964 CRIM1 (ENSSVLG00005019815) #32 ENSSVLG00005019685 FEZ2 (ENSSVLG00005019615) #33 VIT (ENSSVLG00005019081) #34 STRN (ENSSVLG00005018617) #35 HEATR5B (ENSSVLG00005018556) #36 Eurasian red squirrel MODERN SPECIES 134 ENSSVLG00005011085 ENSSVLG00005011069 ENSSVLG00005011018 ENSSVLG00005010955 ENSSVLG00005010916 ENSSVLG00005010890 ENSSVLG00005010865 ENSSVLG00005010784 #22 ENSSVLG00005010762 ENSSVLG00005010712 ENSSVLG00005010666