Gnathostomata	ANCESTRAL SPECIES	1411															ENSGT00940000156294 #18	ENSGT00940000155551 #22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000155551 #22
Sarcopterygii	ANCESTRAL SPECIES	164							ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000165963	ENSGT01010000222551	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32
Tetrapoda	ANCESTRAL SPECIES	28	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000165963	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Amniota	ANCESTRAL SPECIES		ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Mammalia	ANCESTRAL SPECIES		ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Theria	ANCESTRAL SPECIES	1	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00550000076318	ENSGT00940000165160	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Eutheria	ANCESTRAL SPECIES	5	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00550000076318	ENSGT00940000165160	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000162109.C ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00950000183970	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000184153	ENSGT00950000183791	ENSGT00950000183416	ENSGT00860000134312	ENSGT00950000183533	ENSGT01090000261056	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Primates	ANCESTRAL SPECIES	1	ENSGT00950000183970	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000184153	ENSGT00950000183791	ENSGT00950000183372	ENSGT00950000183533	ENSGT00950000186539	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Haplorrhini	ANCESTRAL SPECIES	22	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00950000183416	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Catarrhini	ANCESTRAL SPECIES	25	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Cercopithecidae	ANCESTRAL SPECIES	28	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Cercopithecinae	ANCESTRAL SPECIES	23	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n.c #10	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00390000002365.x.d.c.b	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00550000076318	ENSGT00910000148238	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Macaca	ANCESTRAL SPECIES	3	ENSGT00390000002365.x.d.c.b	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00550000076318	ENSGT00910000148238	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00390000001157.A.a	ENSGT00730000111511.b #7	ENSGT00730000111511.a #8	ENSGT00730000111539 #9	ENSGT00940000162756.n.c #10	ENSGT00940000162756.n.d #11	ENSGT00940000162756.m.b #12	ENSGT00940000162756.m.a #13	ENSGT00940000162109.A #14	ENSGT00730000111463 #15	ENSGT00390000006922.m.b.b.b.b #17	ENSGT00940000156294 #18	ENSGT01100000263493.a.b.a.a.b.a.b.a.a #19	ENSGT01100000263539.b.a.a.a.b.b.b.a.a.a.a.b #20	ENSGT01100000263493.a.a.a.b.a.b.a.b.b.b #21	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158406.h #35	ENSGT00940000158231
Rhesus	MODERN SPECIES	13	ENSMMUG00000059605 #7	ENSMMUG00000054249 #8	KRTAP27-1 (ENSMMUG00000050022) #9	ENSMMUG00000061111 #10	ENSMMUG00000014971 #11	ENSMMUG00000054122 #12	KRTAP13-4 (ENSMMUG00000053840) #13	KRTAP15-1 (ENSMMUG00000051605) #14	KRTAP11-1 (ENSMMUG00000051158) #15	ENSMMUG00000057252 #16	ENSMMUG00000056363 #17	TIAM1 (ENSMMUG00000019571) #18	ENSMMUG00000051417 #19	ENSMMUG00000049457 #20	ENSMMUG00000064926 #21	SOD1 (ENSMMUG00000001711) #22	SCAF4 (ENSMMUG00000001712) #23	HUNK (ENSMMUG00000012917) #24	MIS18A (ENSMMUG00000059707) #25	MRAP (ENSMMUG00000059677) #26	URB1 (ENSMMUG00000010295) #27	EVA1C (ENSMMUG00000048824) #28	CFAP298 (ENSMMUG00000010304) #29	SYNJ1 (ENSMMUG00000004624) #30	PAXBP1 (ENSMMUG00000043714) #31	C3H21orf62 (ENSMMUG00000012298) #32	OLIG2 (ENSMMUG00000017652) #33	IFNAR2 (ENSMMUG00000003956) #34	IFNAR1 (ENSMMUG00000003961) #35	IFNGR2 (ENSMMUG00000005508) #36	TMEM50B (ENSMMUG00000005509) #37
Crab-eating macaque	MODERN SPECIES	13	CLDN8 (ENSMFAG00000030251)	KRTAP24-1 (ENSMFAG00000050451)	ENSMFAG00000062742 #7	ENSMFAG00000051583 #8	ENSMFAG00000050984 #11	ENSMFAG00000061919 #12	KRTAP13-4 (ENSMFAG00000061177) #13	ENSMFAG00000044254	KRTAP11-1 (ENSMFAG00000060023) #15	ENSMFAG00000051140 #17	TIAM1 (ENSMFAG00000002250) #18	ENSMFAG00000065247 #19	ENSMFAG00000063674 #20	ENSMFAG00000049480 #21	SCAF4 (ENSMFAG00000037668) #23	SOD1 (ENSMFAG00000041240) #22	HUNK (ENSMFAG00000043007) #24	MIS18A (ENSMFAG00000033702) #25	MRAP (ENSMFAG00000000802) #26	URB1 (ENSMFAG00000034391) #27	EVA1C (ENSMFAG00000034125) #28	TCP10L (ENSMFAG00000045781)	CFAP298 (ENSMFAG00000037088) #29	SYNJ1 (ENSMFAG00000018883) #30	PAXBP1 (ENSMFAG00000002885) #31	C21orf62 (ENSMFAG00000036953) #32	ENSMFAG00000065085 ##19	OLIG2 (ENSMFAG00000048902) #33	IL10RB (ENSMFAG00000039570)	IFNAR1 (ENSMFAG00000043614) ##35	IFNGR2 (ENSMFAG00000001717) #36
Pig-tailed macaque	MODERN SPECIES	503	CLDN8 (ENSMNEG00000037184)	KRTAP25-1 (ENSMNEG00000039095)	KRTAP19-3 (ENSMNEG00000030821)	KRTAP19-4 (ENSMNEG00000035158)	KRTAP19-5 (ENSMNEG00000017520)	ENSMNEG00000029709	ENSMNEG00000030789	KRTAP6-2 (ENSMNEG00000037108)	KRTAP6-1 (ENSMNEG00000043342)	ENSMNEG00000044081	KRTAP21-1 (ENSMNEG00000035289)	ENSMNEG00000041828	TIAM1 (ENSMNEG00000044871) #18	ENSMNEG00000044900	ENSMNEG00000040507	SOD1 (ENSMNEG00000007968) #22	SCAF4 (ENSMNEG00000032966) #23	HUNK (ENSMNEG00000044157) #24	MIS18A (ENSMNEG00000028369) #25	MRAP (ENSMNEG00000013893) #26	URB1 (ENSMNEG00000032981) #27	EVA1C (ENSMNEG00000035226) #28	TCP10L (ENSMNEG00000039234)	CFAP298 (ENSMNEG00000030779) #29	SYNJ1 (ENSMNEG00000040077) #30	ENSMNEG00000010802	PAXBP1 (ENSMNEG00000031929) #31	C21orf62 (ENSMNEG00000018708) #32	OLIG2 (ENSMNEG00000040394) #33	OLIG1 (ENSMNEG00000026267)	IFNAR2 (ENSMNEG00000041434) #34
Cercopithecinae_b	ANCESTRAL SPECIES	29	ENSGT00390000005727.a.b.b.bb.b	ENSGT00390000002365.x.d.c.b	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00550000076318	ENSGT00910000148238	ENSGT00940000156294 #18	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Cercopithecinae_d	ANCESTRAL SPECIES	36									ENSGT00950000183416	ENSGT00950000183372	ENSGT01090000260341	ENSGT00390000015202	ENSGT00910000148238	ENSGT00940000156294 #18	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Sooty mangabey	MODERN SPECIES	465								KRTAP6-2 (ENSCATG00000036799)	KRTAP6-1 (ENSCATG00000045292)	KRTAP21-1 (ENSCATG00000034414)	KRTAP7-1 (ENSCATG00000011966)	ENSCATG00000039770 #17	ENSCATG00000042584	TIAM1 (ENSCATG00000015629) #18	ENSCATG00000040145	SOD1 (ENSCATG00000040821) #22	SCAF4 (ENSCATG00000030379) #23	HUNK (ENSCATG00000028680) #24	MIS18A (ENSCATG00000034951) #25	MRAP (ENSCATG00000042418) #26	URB1 (ENSCATG00000042630) #27	EVA1C (ENSCATG00000027012) #28	TCP10L (ENSCATG00000010454)	CFAP298 (ENSCATG00000037049) #29	SYNJ1 (ENSCATG00000033891) #30	ENSCATG00000016391	PAXBP1 (ENSCATG00000030287) #31	C21orf62 (ENSCATG00000043153) #32	OLIG2 (ENSCATG00000044610) #33	OLIG1 (ENSCATG00000018778)	IFNAR2 (ENSCATG00000018593) #34
Drill	MODERN SPECIES	998											KRTAP21-1 (ENSMLEG00000035329)	KRTAP7-1 (ENSMLEG00000003571)	ENSMLEG00000033272	TIAM1 (ENSMLEG00000033214) #18	ENSMLEG00000033917	SOD1 (ENSMLEG00000034867) #22	SCAF4 (ENSMLEG00000039674) #23	HUNK (ENSMLEG00000038042) #24	MIS18A (ENSMLEG00000038072) #25	MRAP (ENSMLEG00000033382) #26	URB1 (ENSMLEG00000041435) #27	EVA1C (ENSMLEG00000031085) #28	TCP10L (ENSMLEG00000032376)	CFAP298 (ENSMLEG00000028996) #29	SYNJ1 (ENSMLEG00000037029) #30	ENSMLEG00000025731	PAXBP1 (ENSMLEG00000033450) #31	C21orf62 (ENSMLEG00000034397) #32	OLIG2 (ENSMLEG00000006770) #33
Olive baboon	MODERN SPECIES	14	ENSPANG00000041586 #14	KRTAP19-1 (ENSPANG00000049508)	KRTAP19-2 (ENSPANG00000051383)	ENSPANG00000041824	ENSPANG00000036982	KRTAP22-2 (ENSPANG00000047296)	KRTAP20-2 (ENSPANG00000046975)	ENSPANG00000045506	ENSPANG00000035982	KRTAP8-1 (ENSPANG00000038315)	KRTAP7-1 (ENSPANG00000035065)	KRTAP11-1 (ENSPANG00000051150) #15	ENSPANG00000006687 #17	TIAM1 (ENSPANG00000016520) #18	SCAF4 (ENSPANG00000017332) #23	SOD1 (ENSPANG00000022109) #22	HUNK (ENSPANG00000022529) #24	MIS18A (ENSPANG00000019589) #25	MRAP (ENSPANG00000011261) #26	URB1 (ENSPANG00000021964) #27	EVA1C (ENSPANG00000015096) #28	TCP10L (ENSPANG00000021143)	CFAP298 (ENSPANG00000022530) #29	SYNJ1 (ENSPANG00000022531) #30	PAXBP1 (ENSPANG00000022535) #31	C21orf62 (ENSPANG00000017134) #32	ENSPANG00000047617	OLIG2 (ENSPANG00000040767) #33	IFNAR2 (ENSPANG00000022203) #34	IL10RB (ENSPANG00000021145)	IFNAR1 (ENSPANG00000007665) #35
Rhinopithecus	ANCESTRAL SPECIES	70									ENSGT01100000263699	ENSGT00950000183416	ENSGT00950000183372	ENSGT01000000215755	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155898.d	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Black snub-nosed monkey	MODERN SPECIES	741													ENSRBIG00000014035	ENSRBIG00000039717	TIAM1 (ENSRBIG00000033361) #18	SOD1 (ENSRBIG00000029804) #22	SCAF4 (ENSRBIG00000040007) #23	HUNK (ENSRBIG00000031500) #24	MIS18A (ENSRBIG00000038961) #25	MRAP (ENSRBIG00000040139) #26	URB1 (ENSRBIG00000033122) #27	EVA1C (ENSRBIG00000034927) #28	TCP10L (ENSRBIG00000033081)	CFAP298 (ENSRBIG00000026515) #29	SYNJ1 (ENSRBIG00000034477) #30	PAXBP1 (ENSRBIG00000041633) #31	C21orf62 (ENSRBIG00000029872) #32	OLIG2 (ENSRBIG00000044608) #33	OLIG1 (ENSRBIG00000025302)	IFNAR2 (ENSRBIG00000044541) #34	IL10RB (ENSRBIG00000034310)
Golden snub-nosed monkey	MODERN SPECIES	625										KRTAP6-2 (ENSRROG00000039280)	KRTAP6-1 (ENSRROG00000042039)	KRTAP20-4 (ENSRROG00000030765)	ENSRROG00000044768	TIAM1 (ENSRROG00000028697) #18	ENSRROG00000018104	SOD1 (ENSRROG00000044308) #22	SCAF4 (ENSRROG00000029488) #23	HUNK (ENSRROG00000037737) #24
Hominoidea	ANCESTRAL SPECIES	26	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00550000076392	ENSGT00840000130947	ENSGT01090000260341	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Hominidae	ANCESTRAL SPECIES	25	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000184153	ENSGT00950000183791	ENSGT00530000065184	ENSGT00550000076392	ENSGT00840000130947	ENSGT01090000260341	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	27	ENSGT00950000183416	ENSGT00860000134312	ENSGT00950000183372	ENSGT00950000183533	ENSGT01000000215755	ENSGT00550000076392	ENSGT00840000130947	ENSGT01090000260341	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Homo/Pan group	ANCESTRAL SPECIES	26	ENSGT00950000183372	ENSGT00950000183533	ENSGT01000000215755	ENSGT00950000186539	ENSGT00410000029383	ENSGT00550000076392	ENSGT00840000130947	ENSGT01090000260341	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Pan	ANCESTRAL SPECIES	27	ENSGT00860000134312	ENSGT00950000183372	ENSGT00950000183533	ENSGT01000000215755	ENSGT00950000186539	ENSGT00410000029383	ENSGT00550000076392	ENSGT01090000260341	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00390000009366.c.b	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00530000063927.a.a.n.b.b.b	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	12	KRTAP19-3 (ENSPPAG00000032888)	KRTAP19-5 (ENSPPAG00000032202)	KRTAP22-2 (ENSPPAG00000030023)	ENSPPAG00000030209	KRTAP6-2 (ENSPPAG00000032330)	KRTAP22-1 (ENSPPAG00000032266)	KRTAP6-1 (ENSPPAG00000032430)	KRTAP21-1 (ENSPPAG00000030330)	KRTAP8-1 (ENSPPAG00000032139)	KRTAP7-1 (ENSPPAG00000032653)	KRTAP11-1 (ENSPPAG00000032405) #15	KRTAP19-8 (ENSPPAG00000032522)	ENSPPAG00000030797	TIAM1 (ENSPPAG00000033381) #18	ENSPPAG00000026185	ENSPPAG00000027217 #22	SCAF4 (ENSPPAG00000028535) #23	HUNK (ENSPPAG00000032225) #24	MIS18A (ENSPPAG00000001292) #25	MRAP (ENSPPAG00000002893) #26	URB1 (ENSPPAG00000003423) #27	EVA1C (ENSPPAG00000005532) #28	TCP10L (ENSPPAG00000007355)	ENSPPAG00000009038 #29	SYNJ1 (ENSPPAG00000026784) #30	PAXBP1 (ENSPPAG00000034585) #31	ENSPPAG00000034697 #32	ENSPPAG00000034805	IFNAR2 (ENSPPAG00000035117) #34	IL10RB (ENSPPAG00000010535)	IFNAR1 (ENSPPAG00000014398) #35
Bonobo	MODERN SPECIES		ENSPPAG00000031548	ENSPPAG00000034254	MAP1LC3C (ENSPPAG00000026353)	ENSPPAG00000042191	BECN2 (ENSPPAG00000016547)	EXO1 (ENSPPAG00000038555)	WDR64 (ENSPPAG00000015349)	OPN3 (ENSPPAG00000034935)	KMO (ENSPPAG00000030870)	FH (ENSPPAG00000029968)	RGS7 (ENSPPAG00000031922)	GREM2 (ENSPPAG00000011100)	ENSPPAG00000029823	ENSPPAG00000041841	ENSPPAG00000036597	ENSPPAG00000025320 #22	ENSPPAG00000004891	ENSPPAG00000026720	ENSPPAG00000034197	ENSPPAG00000024258	ZP4 (ENSPPAG00000030466)	RYR2 (ENSPPAG00000043978)	MT1HL1 (ENSPPAG00000025438)	ENSPPAG00000030831	MTR (ENSPPAG00000001371)	ENSPPAG00000030376	ACTN2 (ENSPPAG00000032972)	HEATR1 (ENSPPAG00000036487)	ENSPPAG00000034870	ENSPPAG00000030182	EDARADD (ENSPPAG00000038427)
Chimpanzee	MODERN SPECIES	12	KRTAP6-2 (ENSPTRG00000031450)	KRTAP22-1 (ENSPTRG00000013838)	KRTAP6-1 (ENSPTRG00000013839)	KRTAP20-1 (ENSPTRG00000013840)	KRTAP20-4 (ENSPTRG00000031449)	KRTAP20-2 (ENSPTRG00000013841)	KRTAP20-3 (ENSPTRG00000048081)	KRTAP21-3 (ENSPTRG00000041998)	KRTAP21-1 (ENSPTRG00000013842)	KRTAP8-1 (ENSPTRG00000013843)	KRTAP7-1 (ENSPTRG00000052397)	KRTAP11-1 (ENSPTRG00000013844) #15	KRTAP19-8 (ENSPTRG00000031445)	ENSPTRG00000044292	TIAM1 (ENSPTRG00000013846) #18	SOD1 (ENSPTRG00000013847) #22	SCAF4 (ENSPTRG00000013848) #23	HUNK (ENSPTRG00000013849) #24	MIS18A (ENSPTRG00000013850) #25	MRAP (ENSPTRG00000013851) #26	URB1 (ENSPTRG00000013852) #27	EVA1C (ENSPTRG00000013854) #28	TCP10L (ENSPTRG00000013856)	CFAP298 (ENSPTRG00000013857) #29	SYNJ1 (ENSPTRG00000023787) #30	PAXBP1 (ENSPTRG00000013861) #31	C21H21orf62 (ENSPTRG00000013862) #32	ENSPTRG00000051353 #33	ENSPTRG00000051983	ENSPTRG00000049835	IFNAR2 (ENSPTRG00000013865) #34
Human	MODERN SPECIES	13	KRTAP6-2 (ENSG00000186930)	KRTAP22-1 (ENSG00000186924)	KRTAP6-1 (ENSG00000184724)	KRTAP20-1 (ENSG00000244624)	KRTAP20-4 (ENSG00000206105)	KRTAP20-2 (ENSG00000184032)	KRTAP20-3 (ENSG00000206104)	KRTAP21-3 (ENSG00000231068)	KRTAP21-2 (ENSG00000187026)	KRTAP21-1 (ENSG00000187005)	KRTAP8-1 (ENSG00000183640)	KRTAP7-1 (ENSG00000274749)	KRTAP11-1 (ENSG00000182591) #15	KRTAP19-8 (ENSG00000206102)	TIAM1 (ENSG00000156299) #18	SOD1 (ENSG00000142168) #22	SCAF4 (ENSG00000156304) #23	HUNK (ENSG00000142149) #24	MIS18A (ENSG00000159055) #25	MRAP (ENSG00000170262) #26	URB1 (ENSG00000142207) #27	CFAP298-TCP10L (ENSG00000265590)	EVA1C (ENSG00000166979) #28	TCP10L (ENSG00000242220)	CFAP298 (ENSG00000159079) #29	SYNJ1 (ENSG00000159082) #30	PAXBP1 (ENSG00000159086) #31	C21orf62 (ENSG00000205929) #32	OLIG2 (ENSG00000205927) #33	OLIG1 (ENSG00000184221)	IFNAR2 (ENSG00000159110) #34
Gorilla	MODERN SPECIES	12	KRTAP19-6 (ENSGGOG00000022042)	KRTAP19-7 (ENSGGOG00000001659)	KRTAP22-2 (ENSGGOG00000010140)	KRTAP6-3 (ENSGGOG00000044096)	KRTAP6-2 (ENSGGOG00000023791)	KRTAP22-1 (ENSGGOG00000043201)	KRTAP6-1 (ENSGGOG00000014909)	KRTAP20-1 (ENSGGOG00000023946)	KRTAP20-4 (ENSGGOG00000040267)	KRTAP20-3 (ENSGGOG00000038558)	KRTAP21-2 (ENSGGOG00000023357)	KRTAP8-1 (ENSGGOG00000026820)	KRTAP7-1 (ENSGGOG00000041734)	TIAM1 (ENSGGOG00000014747) #18	ENSGGOG00000024857	SOD1 (ENSGGOG00000015554) #22	SCAF4 (ENSGGOG00000015557) #23	HUNK (ENSGGOG00000016651) #24	MIS18A (ENSGGOG00000004831) #25	MRAP (ENSGGOG00000000284) #26	URB1 (ENSGGOG00000000285) #27	EVA1C (ENSGGOG00000005797) #28	TCP10L (ENSGGOG00000042620)	SYNJ1 (ENSGGOG00000015945) #30	PAXBP1 (ENSGGOG00000016944) #31	ENSGGOG00000009078 #32	IFNAR2 (ENSGGOG00000039376) #34	IL10RB (ENSGGOG00000012242)	IFNAR1 (ENSGGOG00000022174) #35	IFNGR2 (ENSGGOG00000007591) #36	TMEM50B (ENSGGOG00000034844) ##37
Orangutan	MODERN SPECIES	12	KRTAP13-4 (ENSPPYG00000011334) #13	KRTAP19-1 (ENSPPYG00000011336)	KRTAP19-2 (ENSPPYG00000011337)	KRTAP19-5 (ENSPPYG00000011338)	KRTAP19-6 (ENSPPYG00000011339)	KRTAP19-7 (ENSPPYG00000031061)	KRTAP22-2 (ENSPPYG00000011341)	KRTAP20-1 (ENSPPYG00000011549)	KRTAP20-2 (ENSPPYG00000011345)	KRTAP21-3 (ENSPPYG00000011346)	KRTAP21-2 (ENSPPYG00000011347)	KRTAP8-1 (ENSPPYG00000011348)	KRTAP11-1 (ENSPPYG00000011349) #15	KRTAP19-8 (ENSPPYG00000037907)	TIAM1 (ENSPPYG00000011351) #18	SOD1 (ENSPPYG00000011354) #22	SCAF4 (ENSPPYG00000011355) #23	HUNK (ENSPPYG00000011356) #24	ENSPPYG00000011357 #25	MRAP (ENSPPYG00000011358) #26	URB1 (ENSPPYG00000011359) #27	EVA1C (ENSPPYG00000011361) #28	ENSPPYG00000011363	CFAP298 (ENSPPYG00000011364) #29	ENSPPYG00000011365 #30	ENSPPYG00000036409	PAXBP1 (ENSPPYG00000011366) #31	ENSPPYG00000011368 #32	OLIG2 (ENSPPYG00000011369) #33	OLIG1 (ENSPPYG00000011370)	IFNAR2 (ENSPPYG00000011372) #34
Gibbon	MODERN SPECIES	17	GRIK1 (ENSNLEG00000003377)	CLDN17 (ENSNLEG00000018494)	CLDN8 (ENSNLEG00000003418)	KRTAP26-1 (ENSNLEG00000033841) #7	KRTAP13-4 (ENSNLEG00000018503) #13	ENSNLEG00000018508	KRTAP6-1 (ENSNLEG00000029002)	KRTAP20-1 (ENSNLEG00000018510)	KRTAP20-2 (ENSNLEG00000003437)	KRTAP20-3 (ENSNLEG00000032887)	KRTAP21-1 (ENSNLEG00000003439)	KRTAP8-1 (ENSNLEG00000018512)	KRTAP7-1 (ENSNLEG00000018513)	TIAM1 (ENSNLEG00000003443) #18	ENSNLEG00000028524	SOD1 (ENSNLEG00000003545) #22	SCAF4 (ENSNLEG00000003569) #23	HUNK (ENSNLEG00000036238) #24	MIS18A (ENSNLEG00000003662) #25	MRAP (ENSNLEG00000003671) #26	URB1 (ENSNLEG00000026872) #27	EVA1C (ENSNLEG00000003679) #28	TCP10L (ENSNLEG00000031925)	CFAP298 (ENSNLEG00000030059) #29	ENSNLEG00000003734 #30	PAXBP1 (ENSNLEG00000003751) #31	ENSNLEG00000003819 #32	OLIG2 (ENSNLEG00000003822) #33	IFNAR2 (ENSNLEG00000003834) #34	IL10RB (ENSNLEG00000003835)	IFNAR1 (ENSNLEG00000003846) #35
Platyrrhini	ANCESTRAL SPECIES	31	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000165160	ENSGT00530000065184	ENSGT00860000134312	ENSGT00530000064274	ENSGT00940000159077	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070.b #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a.k #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Cebidae	ANCESTRAL SPECIES	32	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073.a	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070.b #24	ENSGT00940000161070.a #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a.k #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Marmoset	MODERN SPECIES	13	BACH1 (ENSCJAG00000008651)	GRIK1 (ENSCJAG00000008672)	CLDN8 (ENSCJAG00000022699)	ENSCJAG00000086833	KRTAP24-1 (ENSCJAG00000043903)	KRTAP26-1 (ENSCJAG00000038290) #7	ENSCJAG00000075622	KRTAP13-4 (ENSCJAG00000008784) #13	KRTAP19-3 (ENSCJAG00000038921)	ENSCJAG00000080831	KRTAP19-6 (ENSCJAG00000086841)	KRTAP20-1 (ENSCJAG00000043708)	ENSCJAG00000076983	KRTAP11-1 (ENSCJAG00000022606) #15	TIAM1 (ENSCJAG00000008881) #18	SOD1 (ENSCJAG00000008983) #22	SCAF4 (ENSCJAG00000008993) #23	HUNK (ENSCJAG00000045743) #24	ENSCJAG00000009090 #25	ENSCJAG00000081135	MRAP (ENSCJAG00000009105) #26	URB1 (ENSCJAG00000009118) #27	EVA1C (ENSCJAG00000009130) #28	CFAP298 (ENSCJAG00000009160) #29	SYNJ1 (ENSCJAG00000009187) #30	PAXBP1 (ENSCJAG00000009330) #31	C21orf62 (ENSCJAG00000009437) #32	OLIG2 (ENSCJAG00000040469) #33	ENSCJAG00000082886	ENSCJAG00000077424	IFNAR2 (ENSCJAG00000000059) #34
Cebidae_a	ANCESTRAL SPECIES	29	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073.a	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000155050.c.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070.b #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a.k #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	66	LTN1 (ENSSBOG00000032302)	RWDD2B (ENSSBOG00000023882)	ENSSBOG00000031081	CCT8 (ENSSBOG00000031141)	ENSSBOG00000021433	BACH1 (ENSSBOG00000021370)	GRIK1 (ENSSBOG00000025473)	CLDN17 (ENSSBOG00000020255)	KRTAP19-5 (ENSSBOG00000029975)	KRTAP22-1 (ENSSBOG00000035202)	KRTAP6-2 (ENSSBOG00000029938)	KRTAP21-3 (ENSSBOG00000028141)	KRTAP21-2 (ENSSBOG00000024800)	KRTAP21-1 (ENSSBOG00000035571)	TIAM1 (ENSSBOG00000023093) #18	ENSSBOG00000035760 #22	SCAF4 (ENSSBOG00000024068) #23	HUNK (ENSSBOG00000026563) #24	MIS18A (ENSSBOG00000033176) #25	MRAP (ENSSBOG00000029482) #26	URB1 (ENSSBOG00000027672) #27	EVA1C (ENSSBOG00000028646) #28	CFAP298 (ENSSBOG00000019656) #29	SYNJ1 (ENSSBOG00000021001) #30	PAXBP1 (ENSSBOG00000030172) #31	C21orf62 (ENSSBOG00000021330) #32	ENSSBOG00000016676	OLIG2 (ENSSBOG00000033043) #33	OLIG1 (ENSSBOG00000023447)	IFNAR2 (ENSSBOG00000031096) #34	ENSSBOG00000018437
Bolivian squirrel monkey	MODERN SPECIES	58	ENSSBOG00000005717	TSHZ1 (ENSSBOG00000017309)	PTGR3 (ENSSBOG00000035548)	ZNF407 (ENSSBOG00000025007)	CNDP1 (ENSSBOG00000020895)	CNDP2 (ENSSBOG00000027831)	DIPK1C (ENSSBOG00000024590)	C18orf63 (ENSSBOG00000027206)	CYB5A (ENSSBOG00000006601)	TIMM21 (ENSSBOG00000034325)	FBXO15 (ENSSBOG00000035966)	ENSSBOG00000026756	ENSSBOG00000033127	NETO1 (ENSSBOG00000035887)	CBLN2 (ENSSBOG00000019328)	ENSSBOG00000024747 #22	ENSSBOG00000010853	SOCS6 (ENSSBOG00000020065)	RTTN (ENSSBOG00000006589)	ENSSBOG00000024700	CD226 (ENSSBOG00000032857)	DOK6 (ENSSBOG00000025872)	ENSSBOG00000028203	TMX3 (ENSSBOG00000032998)	DSEL (ENSSBOG00000014071)	CDH19 (ENSSBOG00000033631)	CDH7 (ENSSBOG00000023446)	SERPINB8 (ENSSBOG00000026962)	HMSD (ENSSBOG00000022952)	SERPINB10 (ENSSBOG00000026076)	SERPINB2 (ENSSBOG00000028920)
Capuchin	MODERN SPECIES	619													ENSCCAG00000035782	TIAM1 (ENSCCAG00000036707) #18	ENSCCAG00000029290	SOD1 (ENSCCAG00000034174) #22	SCAF4 (ENSCCAG00000033727) #23
Mas night monkey	MODERN SPECIES	1376	RWDD2B (ENSANAG00000033045)	ENSANAG00000025174	CCT8 (ENSANAG00000020085)	ENSANAG00000029900	BACH1 (ENSANAG00000005567)	GRIK1 (ENSANAG00000033617)	CLDN17 (ENSANAG00000020019)	KRTAP19-5 (ENSANAG00000024336)	KRTAP22-2 (ENSANAG00000023310)	KRTAP22-1 (ENSANAG00000038159)	ENSANAG00000027319	ENSANAG00000001699	KRTAP8-1 (ENSANAG00000020056)	TIAM1 (ENSANAG00000032940) #18	ENSANAG00000038324	SOD1 (ENSANAG00000038236) #22	SCAF4 (ENSANAG00000037494) #23	ENSANAG00000018665 #24	MIS18A (ENSANAG00000030442) #25	MRAP (ENSANAG00000029561) #26	URB1 (ENSANAG00000024617) #27	EVA1C (ENSANAG00000020771) #28	CFAP298 (ENSANAG00000027049) #29	SYNJ1 (ENSANAG00000027325) #30	PAXBP1 (ENSANAG00000033120) #31	C21orf62 (ENSANAG00000027350) #32	OLIG1 (ENSANAG00000019991)	IFNAR2 (ENSANAG00000021497) #34	IL10RB (ENSANAG00000022122)	IFNAR1 (ENSANAG00000031070) #35	IFNGR2 (ENSANAG00000037994) #36
Tarsier	MODERN SPECIES	1952															ENSTSYG00000027129	SOD1 (ENSTSYG00000036906) #22	SCAF4 (ENSTSYG00000011344) #23
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00730000111539 #9	ENSGT00940000162756.n.g #10	ENSGT00940000162756.n.h #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00940000165160	ENSGT00950000183416	ENSGT00950000183372	ENSGT00950000183533	ENSGT00950000186539	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00950000183564	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Mouse lemur	MODERN SPECIES	24	RWDD2B (ENSMICG00000034054)	USP16 (ENSMICG00000031747)	CCT8 (ENSMICG00000002601)	MAP3K7CL (ENSMICG00000038209)	BACH1 (ENSMICG00000030387)	GRIK1 (ENSMICG00000000648)	ENSMICG00000000669 #10	ENSMICG00000047432	ENSMICG00000000670 #10	KRTAP19-7 (ENSMICG00000031600)	KRTAP6-2 (ENSMICG00000034660)	KRTAP6-1 (ENSMICG00000034583)	KRTAP11-1 (ENSMICG00000010543) #15	KRTAP19-8 (ENSMICG00000044709)	TIAM1 (ENSMICG00000016829) #18	SOD1 (ENSMICG00000005253) #22	SCAF4 (ENSMICG00000005256) #23	HUNK (ENSMICG00000035191) #24	MIS18A (ENSMICG00000038925) #25	ENSMICG00000044157	URB1 (ENSMICG00000016424) #27	EVA1C (ENSMICG00000038077) #28	ENSMICG00000016456 #29	SYNJ1 (ENSMICG00000034953) #30	PAXBP1 (ENSMICG00000037481) #31	C21orf62 (ENSMICG00000045267) #32	OLIG2 (ENSMICG00000041942) #33	OLIG1 (ENSMICG00000028171)	IFNAR2 (ENSMICG00000044490) #34	IL10RB (ENSMICG00000006353)	IFNAR1 (ENSMICG00000006359) #35
Lemuriformes_a	ANCESTRAL SPECIES	60	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n.g #10	ENSGT00950000183791	ENSGT00950000183372	ENSGT00950000183533	ENSGT00950000186539	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Coquerels sifaka	DUPLICATION
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	134								GRIN3A (ENSPCOG00000008500)	RNF20 (ENSPCOG00000026072)	PGAP4 (ENSPCOG00000014025)	ALDOB (ENSPCOG00000026694)	ZNF189 (ENSPCOG00000016670)	BAAT (ENSPCOG00000015820)	PLPPR1 (ENSPCOG00000005256)	ENSPCOG00000028150 #22	ENSPCOG00000012244 #22	CAVIN4 (ENSPCOG00000012594)	TMEFF1 (ENSPCOG00000014294)	MSANTD3 (ENSPCOG00000028663)	TEX10 (ENSPCOG00000026793)	ENSPCOG00000022135	INVS (ENSPCOG00000024587)	ERP44 (ENSPCOG00000027107)	STX17 (ENSPCOG00000019872)	NR4A3 (ENSPCOG00000012688)	SEC61B (ENSPCOG00000021383)	ALG2 (ENSPCOG00000014203)	TGFBR1 (ENSPCOG00000021241)	COL15A1 (ENSPCOG00000007449)	GALNT12 (ENSPCOG00000022046)	ANKS6 (ENSPCOG00000019218)
Coquerels sifaka	MODERN SPECIES	134									GRIN3A (ENSPCOG00000008500)	RNF20 (ENSPCOG00000026072)	PGAP4 (ENSPCOG00000014025)	ALDOB (ENSPCOG00000026694)	ZNF189 (ENSPCOG00000016670)	BAAT (ENSPCOG00000015820)	PLPPR1 (ENSPCOG00000005256)	ENSPCOG00000028150 #22	ENSPCOG00000012244 #22	CAVIN4 (ENSPCOG00000012594)	TMEFF1 (ENSPCOG00000014294)	MSANTD3 (ENSPCOG00000028663)	TEX10 (ENSPCOG00000026793)	ENSPCOG00000022135	INVS (ENSPCOG00000024587)	ERP44 (ENSPCOG00000027107)	STX17 (ENSPCOG00000019872)	NR4A3 (ENSPCOG00000012688)	SEC61B (ENSPCOG00000021383)	ALG2 (ENSPCOG00000014203)	TGFBR1 (ENSPCOG00000021241)	COL15A1 (ENSPCOG00000007449)	GALNT12 (ENSPCOG00000022046)
Coquerels sifaka	MODERN SPECIES	697	RWDD2B (ENSPCOG00000028447)	USP16 (ENSPCOG00000015373)	CCT8 (ENSPCOG00000025167)	MAP3K7CL (ENSPCOG00000022793)	ENSPCOG00000021857	BACH1 (ENSPCOG00000022879)	GRIK1 (ENSPCOG00000025437)	ENSPCOG00000008176 #10	ENSPCOG00000023297 #10	ENSPCOG00000026332	ENSPCOG00000021232	KRTAP19-7 (ENSPCOG00000026533)	KRTAP6-1 (ENSPCOG00000020897)	KRTAP19-8 (ENSPCOG00000014486)	TIAM1 (ENSPCOG00000026538) #18	ENSPCOG00000019554 #22	SCAF4 (ENSPCOG00000018710) #23	ENSPCOG00000022163	HUNK (ENSPCOG00000007940) #24	MIS18A (ENSPCOG00000024896) #25	ENSPCOG00000014658	URB1 (ENSPCOG00000022695) #27	EVA1C (ENSPCOG00000024196) #28	CFAP298 (ENSPCOG00000027544) #29	SYNJ1 (ENSPCOG00000024841) #30	PAXBP1 (ENSPCOG00000028582) #31	C21orf62 (ENSPCOG00000015192) #32	OLIG2 (ENSPCOG00000026499) #33	OLIG1 (ENSPCOG00000012882)	ENSPCOG00000028653	ENSPCOG00000011549
Greater bamboo lemur	MODERN SPECIES	22	PPP1R11 (ENSPSMG00000010766)	ENSPSMG00000010758	ZFP57 (ENSPSMG00000010755)	MOG (ENSPSMG00000010712)	GABBR1 (ENSPSMG00000010212)	OR2H2 (ENSPSMG00000009986)	UBD (ENSPSMG00000009976)	KRTAP6-1 (ENSPSMG00000009968)	KRTAP20-1 (ENSPSMG00000009957)	KRTAP20-2 (ENSPSMG00000009950)	ENSPSMG00000009935	KRTAP8-1 (ENSPSMG00000009928)	KRTAP7-1 (ENSPSMG00000009924)	KRTAP11-1 (ENSPSMG00000009919) #15	TIAM1 (ENSPSMG00000009838) #18	SOD1 (ENSPSMG00000009679) #22	SCAF4 (ENSPSMG00000009574) #23	HUNK (ENSPSMG00000009503) #24	ENSPSMG00000009496	MIS18A (ENSPSMG00000009489) #25	MRAP (ENSPSMG00000009480) #26	URB1 (ENSPSMG00000009456) #27	EVA1C (ENSPSMG00000009373) #28	CFAP298 (ENSPSMG00000009317) #29	SYNJ1 (ENSPSMG00000008973) #30	PAXBP1 (ENSPSMG00000008546) #31	C21orf62 (ENSPSMG00000008496) #32	OLIG2 (ENSPSMG00000008484) #33	OLIG1 (ENSPSMG00000008478)
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	226	CLDN17 (ENSOGAG00000003639)	CLDN8 (ENSOGAG00000003643)	KRTAP27-1 (ENSOGAG00000003652) #9	ENSOGAG00000003655 #10	ENSOGAG00000026011 #10	ENSOGAG00000003669	ENSOGAG00000007031	ENSOGAG00000003429	ENSOGAG00000003432	ENSOGAG00000016316	KRTAP8-1 (ENSOGAG00000030140)	KRTAP7-1 (ENSOGAG00000026158)	KRTAP11-1 (ENSOGAG00000016317) #15	TIAM1 (ENSOGAG00000004005) #18	ENSOGAG00000029301	ENSOGAG00000014646 #22	SCAF4 (ENSOGAG00000014653) #23	ENSOGAG00000033329	HUNK (ENSOGAG00000010230) #24	MIS18A (ENSOGAG00000017137) #25	MRAP (ENSOGAG00000017139) #26	URB1 (ENSOGAG00000017140) #27	EVA1C (ENSOGAG00000009260) #28	CFAP298 (ENSOGAG00000006008) #29	SYNJ1 (ENSOGAG00000006010) #30	PAXBP1 (ENSOGAG00000003344) #31	C21orf62 (ENSOGAG00000027318) #32	ENSOGAG00000032768	OLIG2 (ENSOGAG00000026818) #33	OLIG1 (ENSOGAG00000033584)	ENSOGAG00000027625
Bushbaby	MODERN SPECIES	125	LRRC8D (ENSOGAG00000033080)	LRRC8C (ENSOGAG00000005172)	ENSOGAG00000026324	LRRC8B (ENSOGAG00000032246)	ENSOGAG00000015856	ENSOGAG00000003899	GBP5 (ENSOGAG00000015863)	ENSOGAG00000031656	ENSOGAG00000031422	ENSOGAG00000004493	GBP7 (ENSOGAG00000002535)	ENSOGAG00000005755	KYAT3 (ENSOGAG00000014512)	GTF2B (ENSOGAG00000005753)	PKN2 (ENSOGAG00000005748)	ENSOGAG00000030868 #22	LMO4 (ENSOGAG00000002297)	HS2ST1 (ENSOGAG00000026296)	SH3GLB1 (ENSOGAG00000009494)	ENSOGAG00000014165	CLCA4 (ENSOGAG00000014158)	CLCA1 (ENSOGAG00000014152)	CLCA2 (ENSOGAG00000014147)	ODF2L (ENSOGAG00000014145)	COL24A1 (ENSOGAG00000010965)	ZNHIT6 (ENSOGAG00000010963)	CCN1 (ENSOGAG00000010959)	ENSOGAG00000033406	DDAH1 (ENSOGAG00000009978)	BCL10 (ENSOGAG00000009976)	C1orf52 (ENSOGAG00000008908)
Bushbaby	MODERN SPECIES	129	ENSOGAG00000025830	ENSOGAG00000033971	NIPSNAP3A (ENSOGAG00000009111)	NIPSNAP3B (ENSOGAG00000009112)	ABCA1 (ENSOGAG00000009117)	SLC44A1 (ENSOGAG00000005531)	FSD1L (ENSOGAG00000029141)	FKTN (ENSOGAG00000024071)	TAL2 (ENSOGAG00000009225)	TMEM38B (ENSOGAG00000033320)	ZNF462 (ENSOGAG00000001625)	RAD23B (ENSOGAG00000014216)	ENSOGAG00000024651	ENSOGAG00000025236	KLF4 (ENSOGAG00000029918)	ENSOGAG00000024789 #22	ACTL7B (ENSOGAG00000009063)	ACTL7A (ENSOGAG00000009064)	ELP1 (ENSOGAG00000009065)	ABITRAM (ENSOGAG00000024317)	CTNNAL1 (ENSOGAG00000009072)	TMEM245 (ENSOGAG00000009075)	FRRS1L (ENSOGAG00000026708)	EPB41L4B (ENSOGAG00000005508)	PTPN3 (ENSOGAG00000016018)	ENSOGAG00000034039	ENSOGAG00000025160	PALM2AKAP2 (ENSOGAG00000009157)	C9orf152 (ENSOGAG00000009164)	ENSOGAG00000009165	SVEP1 (ENSOGAG00000011809)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT00940000165160	ENSGT00950000184153	ENSGT01100000263699	ENSGT00950000183533	ENSGT01090000261056	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Tree shrew	MODERN SPECIES	2054																SOD1 (ENSTBEG00000007333) #22	SCAF4 (ENSTBEG00000007909) #23
Glires	ANCESTRAL SPECIES	2	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT00940000165160	ENSGT00950000184153	ENSGT01100000263699	ENSGT00950000183533	ENSGT01090000261056	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Lagomorpha	ANCESTRAL SPECIES	151							ENSGT00940000162756.n.m #10	ENSGT00940000162109.A #14	ENSGT00940000165160	ENSGT00950000184153	ENSGT01100000263699	ENSGT00950000183533	ENSGT01090000261056	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000162722
Rabbit	MODERN SPECIES	5	ENSOCUG00000034969	ENSOCUG00000029061	KRTAP19-6 (ENSOCUG00000031197)	ENSOCUG00000021824	ENSOCUG00000021503	ENSOCUG00000023756	ENSOCUG00000027077	KRTAP6-1 (ENSOCUG00000027870)	KAP6.1.1 (ENSOCUG00000017166)	ENSOCUG00000026444	ENSOCUG00000025507	KRTAP20-1 (ENSOCUG00000035121)	ENSOCUG00000029067	KRTAP11-1 (ENSOCUG00000012040) #15	TIAM1 (ENSOCUG00000016524) #18	SOD1 (ENSOCUG00000024552) #22	SCAF4 (ENSOCUG00000008336) #23	HUNK (ENSOCUG00000005096) #24	ENSOCUG00000034657	MIS18A (ENSOCUG00000009379) #25	MRAP (ENSOCUG00000021276) #26	URB1 (ENSOCUG00000009381) #27	ENSOCUG00000012278	CFAP298 (ENSOCUG00000000461) #29	SYNJ1 (ENSOCUG00000001420) #30	C21orf62 (ENSOCUG00000007160) #32	OLIG1 (ENSOCUG00000027389)	PLCXD1 (ENSOCUG00000025223)	GTPBP6 (ENSOCUG00000008245)	ENSOCUG00000017611	ENSOCUG00000028055
Pika	MODERN SPECIES	1760																SOD1 (ENSOPRG00000007008) #22	SCAF4 (ENSOPRG00000007016) #23
Rodentia	ANCESTRAL SPECIES	2	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000162756.m.b #12	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT00940000165160	ENSGT00860000135369	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000136057	ENSGT00860000135680	ENSGT00900000143411	ENSGT00860000135369	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Kangaroo rat	MODERN SPECIES	321							Actr10 (ENSDORG00000008332)	ENSDORG00000002167	Arid4a (ENSDORG00000002170)	Timm9 (ENSDORG00000028490)	ENSDORG00000024020	Daam1 (ENSDORG00000009794)	Gpr135 (ENSDORG00000023535)	L3hypdh (ENSDORG00000004259)	ENSDORG00000004260	ENSDORG00000024605 #22	Rtn1 (ENSDORG00000008249)	Lrrc9 (ENSDORG00000005872)	Pcnx4 (ENSDORG00000004066)	Ppm1a (ENSDORG00000007776)	ENSDORG00000026413	Six6 (ENSDORG00000007182)	Six1 (ENSDORG00000013889)	Six4 (ENSDORG00000023692)	Mnat1 (ENSDORG00000015553)	Trmt5 (ENSDORG00000015555)	Slc38a6 (ENSDORG00000015558)	Tmem30b (ENSDORG00000024610)	Prkch (ENSDORG00000015119)	ENSDORG00000030222	ENSDORG00000004304
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000136057	ENSGT00860000135680	ENSGT00900000143411	ENSGT00860000135369	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Muroidea	ANCESTRAL SPECIES	11	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000136057	ENSGT00860000135680	ENSGT00900000143411	ENSGT00860000135369	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756.n #10	ENSGT00940000161951.i.a.b	ENSGT00940000161951.i.a.a	ENSGT00940000161951.j	ENSGT00940000162109.A #14	ENSGT00860000136057	ENSGT01100000265236	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00940000161951.i.a.b	ENSGT00940000161951.i.a.a.f.b	ENSGT00900000142979	ENSGT00940000162109.A #14	ENSGT01100000265236	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00730000111539 #9	ENSGT00940000162756.n #10	ENSGT00940000161951.i.a.b	ENSGT00940000161951.i.a.a.f.a	ENSGT00940000161951.j	ENSGT00940000161951.i.a.a.f.b	ENSGT00900000142979	ENSGT00940000162109.A #14	ENSGT00860000136185	ENSGT01100000263699.d	ENSGT01100000265236	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Golden Hamster	MODERN SPECIES	659	Krtap15 (ENSMAUG00000017327) #14	ENSMAUG00000017077	ENSMAUG00000004914	Krtap22-2 (ENSMAUG00000014084)	ENSMAUG00000011500	ENSMAUG00000017214	ENSMAUG00000017193	ENSMAUG00000003675	ENSMAUG00000011859	ENSMAUG00000017866	ENSMAUG00000008840	Krtap8-1 (ENSMAUG00000016995)	Krtap7-1 (ENSMAUG00000016949)	Krtap11-1 (ENSMAUG00000016989) #15	Tiam1 (ENSMAUG00000010458) #18	Sod1 (ENSMAUG00000018610) #22	Scaf4 (ENSMAUG00000013307) #23	Hunk (ENSMAUG00000018207) #24	Mis18a (ENSMAUG00000018093) #25	Urb1 (ENSMAUG00000010516) #27	ENSMAUG00000018958	Cfap298 (ENSMAUG00000013919) #29	Synj1 (ENSMAUG00000009743) #30	Paxbp1 (ENSMAUG00000016303) #31	Olig2 (ENSMAUG00000012198) #33	Ifnar1 (ENSMAUG00000014001) #35	Tmem50b (ENSMAUG00000013494) #37	Dnajc28 (ENSMAUG00000000595)	Gart (ENSMAUG00000010349)	ENSMAUG00000002086	Donson (ENSMAUG00000007860)
Chinese hamster chok1gshd	MODERN SPECIES	382	ENSCGRG00001007714	ENSCGRG00001009431	ENSCGRG00001009731	ENSCGRG00001009720	ENSCGRG00001010208	ENSCGRG00001007314	ENSCGRG00001005854	ENSCGRG00001006278	ENSCGRG00001007463	ENSCGRG00001008669	Krtap8-1 (ENSCGRG00001008756)	Krtap7-1 (ENSCGRG00001009623)	Krtap11-1 (ENSCGRG00001009257) #15	Tiam1 (ENSCGRG00001020201) #18	ENSCGRG00001012442	Sod1 (ENSCGRG00001016856) #22	Scaf4 (ENSCGRG00001020821) #23	Hunk (ENSCGRG00001022573) #24	Mis18a (ENSCGRG00001019433) #25	Mrap (ENSCGRG00001019659) #26	Urb1 (ENSCGRG00001010616) #27	Eva1c (ENSCGRG00001000509) #28	Cfap298 (ENSCGRG00001014106) #29	Synj1 (ENSCGRG00001010861) #30	Paxbp1 (ENSCGRG00001016774) #31	4932438H23Rik (ENSCGRG00001007100) #32	Olig2 (ENSCGRG00001011054) #33	Olig1 (ENSCGRG00001008262)	Ifnar2 (ENSCGRG00001004301) #34	Il10rb (ENSCGRG00001022614)	Ifnar1 (ENSCGRG00001021139) #35
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000161951.i.a.a.e	ENSGT00940000161951.j	ENSGT00940000162109.A #14	ENSGT00860000135369	ENSGT00950000184125	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Prairie vole	MODERN SPECIES	7	ENSMOCG00000004918	ENSMOCG00000015235	ENSMOCG00000001109	ENSMOCG00000017797	ENSMOCG00000018669	ENSMOCG00000018304	ENSMOCG00000004811	Krtap20-2 (ENSMOCG00000005116)	ENSMOCG00000012121	ENSMOCG00000015260	ENSMOCG00000009864	Krtap8-1 (ENSMOCG00000010207)	Krtap7-1 (ENSMOCG00000010099)	Krtap11-1 (ENSMOCG00000022551) #15	Tiam1 (ENSMOCG00000001035) #18	Sod1 (ENSMOCG00000017826) #22	Scaf4 (ENSMOCG00000012087) #23	ENSMOCG00000018989	Hunk (ENSMOCG00000018032) #24	ENSMOCG00000010043	Mis18a (ENSMOCG00000004034) #25	Mrap (ENSMOCG00000013959) #26	Urb1 (ENSMOCG00000012613) #27	ENSMOCG00000021515	Cfap298 (ENSMOCG00000008204) #29	ENSMOCG00000017781
Northern American deer mouse	MODERN SPECIES	3	ENSPEMG00000026175	Krtap14 (ENSPEMG00000007683)	Krtap15 (ENSPEMG00000029447) #14	Krtap19-5 (ENSPEMG00000000821)	ENSPEMG00000002531	ENSPEMG00000015256	Krtap6-3 (ENSPEMG00000029501)	Gm9789 (ENSPEMG00000001179)	ENSPEMG00000001108	Krtap21-1 (ENSPEMG00000015124)	Krtap6-2 (ENSPEMG00000026094)	Krtap8-1 (ENSPEMG00000005025)	Krtap7-1 (ENSPEMG00000008552)	Krtap11-1 (ENSPEMG00000011198) #15	Tiam1 (ENSPEMG00000021217) #18	Sod1 (ENSPEMG00000011131) #22	Scaf4 (ENSPEMG00000026699) #23	Hunk (ENSPEMG00000005678) #24	Mrap (ENSPEMG00000030895) #26	Urb1 (ENSPEMG00000021205) #27	Eva1c (ENSPEMG00000022619) #28	Cfap298 (ENSPEMG00000021301) #29	Synj1 (ENSPEMG00000018767) #30	Paxbp1 (ENSPEMG00000022281) #31	4932438H23Rik (ENSPEMG00000022455) #32	Olig2 (ENSPEMG00000031029) #33	Olig1 (ENSPEMG00000005834)	Ifnar2 (ENSPEMG00000023185) #34	Il10rb (ENSPEMG00000022622)	ENSPEMG00000022113 #35	Ifngr2 (ENSPEMG00000000708) #36
Murinae	ANCESTRAL SPECIES	13	ENSGT00940000162756.n #10	ENSGT00940000161951.i.a.b	ENSGT00940000161951.i.a.a	ENSGT00940000161951.j	ENSGT00940000162109.A #14	ENSGT00900000143341	ENSGT00860000136057	ENSGT00860000136023	ENSGT01100000264431	ENSGT01100000264602	ENSGT01100000264006	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Mus	ANCESTRAL SPECIES	13	ENSGT00860000136023	ENSGT00860000135680	ENSGT00900000143411	ENSGT00860000136185	ENSGT01100000263882.b	ENSGT01100000263882.a.b	ENSGT01100000264006	ENSGT01100000264431	ENSGT00950000184524	ENSGT00860000135369	ENSGT00950000184125	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00860000136264	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231.d
Mus_A	ANCESTRAL SPECIES	18	ENSGT00860000135680	ENSGT00900000143411	ENSGT00860000136185	ENSGT00920000149427.c.b.c.b.b	ENSGT01100000263882.b	ENSGT01100000263882.a.b	ENSGT01100000264006	ENSGT01100000264431	ENSGT00950000184524	ENSGT00860000135369	ENSGT00950000184125	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00860000136264	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231.d
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	18	ENSGT00860000136185	ENSGT00920000149427.c.b.c.b.a.a.a	ENSGT00920000149427.c.b.c.b.a.b	ENSGT00950000186541	ENSGT01100000263882.a.a.a	ENSGT01100000263882.a.b	ENSGT01100000264006	ENSGT01100000264431	ENSGT00950000184524	ENSGT00860000135369	ENSGT00950000184125	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.m #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00860000136264	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231.c
Mus_C	ANCESTRAL SPECIES	12	ENSGT00920000149427.c.b.c.a	ENSGT00920000149427.c.a.d	ENSGT00920000149427.c.b.c.b.a.a.b	ENSGT00950000186541	ENSGT01100000263882.a.a.a	ENSGT01100000263882.a.b	ENSGT01100000264006	ENSGT01100000264431	ENSGT00950000184524	ENSGT00860000135369	ENSGT00950000184125	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.m #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00860000136264	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231.d
spretus	MODERN SPECIES	7	MGP_SPRETEiJ_G0021834	MGP_SPRETEiJ_G0021835	MGP_SPRETEiJ_G0021836	MGP_SPRETEiJ_G0021837	Krtap6-3 (MGP_SPRETEiJ_G0021838)	Gm6358 (MGP_SPRETEiJ_G0021839)	Gm9789 (MGP_SPRETEiJ_G0021840)	Gm7735 (MGP_SPRETEiJ_G0021841)	MGP_SPRETEiJ_G0021842	MGP_SPRETEiJ_G0021843	MGP_SPRETEiJ_G0021844	Krtap8-1 (MGP_SPRETEiJ_G0021845)	Krtap7-1 (MGP_SPRETEiJ_G0021846)	Krtap11-1 (MGP_SPRETEiJ_G0021847) #15	Tiam1 (MGP_SPRETEiJ_G0021848) #18	Sod1 (MGP_SPRETEiJ_G0021849) #22	Scaf4 (MGP_SPRETEiJ_G0021850) #23	Hunk (MGP_SPRETEiJ_G0021851) #24	Mis18a (MGP_SPRETEiJ_G0021852) #25	Mrap (MGP_SPRETEiJ_G0021853) #26	Urb1 (MGP_SPRETEiJ_G0021854) #27	Cfap298 (MGP_SPRETEiJ_G0021856) #29	Synj1 (MGP_SPRETEiJ_G0021857) #30	Paxbp1 (MGP_SPRETEiJ_G0021858) #31	4932438H23Rik (MGP_SPRETEiJ_G0021859) #32	MGP_SPRETEiJ_G0021860	Olig2 (MGP_SPRETEiJ_G0021861) #33	Olig1 (MGP_SPRETEiJ_G0021862)	Ifnar2 (MGP_SPRETEiJ_G0021863) #34	MGP_SPRETEiJ_G0021864	MGP_SPRETEiJ_G0021865
Steppe mouse	MODERN SPECIES	2863																Sod1 (ENSMSIG00000017767) #22	Scaf4 (ENSMSIG00000017298) #23	Hunk (ENSMSIG00000017218) #24	Mis18a (ENSMSIG00000017195) #25	Mrap (ENSMSIG00000017183) #26	Urb1 (ENSMSIG00000017152) #27	Eva1c (ENSMSIG00000016689) #28	ENSMSIG00000016647 #29	Synj1 (ENSMSIG00000016178) #30	Paxbp1 (ENSMSIG00000016135) #31	4932438H23Rik (ENSMSIG00000016127) #32	Olig2 (ENSMSIG00000016105) #33	Olig1 (ENSMSIG00000016095)	Ifnar2 (ENSMSIG00000016067) #34	Il10rb (ENSMSIG00000016038)
Mouse	MODERN SPECIES	7	Krtap6-5 (ENSMUSG00000062400)	1110025L11Rik (ENSMUSG00000068073)	Krtap6-3 (ENSMUSG00000057855)	Gm6358 (ENSMUSG00000068071)	Gm10061 (ENSMUSG00000059113)	Gm9789 (ENSMUSG00000044227)	Gm7735 (ENSMUSG00000068068)	1110057P08Rik (ENSMUSG00000068067)	Krtap20-2 (ENSMUSG00000091039)	Krtap21-1 (ENSMUSG00000058368)	Krtap6-2 (ENSMUSG00000062433)	Krtap8-1 (ENSMUSG00000059632)	Krtap7-1 (ENSMUSG00000056706)	Krtap11-1 (ENSMUSG00000091212) #15	Tiam1 (ENSMUSG00000002489) #18	Sod1 (ENSMUSG00000022982) #22	Scaf4 (ENSMUSG00000022983) #23	Hunk (ENSMUSG00000053414) #24	Mis18a (ENSMUSG00000022978) #25	Mrap (ENSMUSG00000039956) #26	Urb1 (ENSMUSG00000039929) #27	Eva1c (ENSMUSG00000039903) #28	Cfap298 (ENSMUSG00000022972) #29	Synj1 (ENSMUSG00000022973) #30	Paxbp1 (ENSMUSG00000022974) #31	4932438H23Rik (ENSMUSG00000039851) #32	Olig2 (ENSMUSG00000039830) #33	Olig1 (ENSMUSG00000046160)	Ifnar2 (ENSMUSG00000022971) #34	Gm21970 (ENSMUSG00000093701)	Il10rb (ENSMUSG00000022969)
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000155551.n #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000155551.n #22
Steppe mouse	MODERN SPECIES	2536														Gng12 (ENSMSIG00000023111)	Gadd45a (ENSMSIG00000023082)	ENSMSIG00000023072 #22	Serbp1 (ENSMSIG00000022810)	Il12rb2 (ENSMSIG00000022681)	ENSMSIG00000022647	Tacstd2 (ENSMSIG00000022639)
Ryukyu mouse	MODERN SPECIES	7	MGP_CAROLIEiJ_G0020928	MGP_CAROLIEiJ_G0020929	MGP_CAROLIEiJ_G0020930	MGP_CAROLIEiJ_G0020931	MGP_CAROLIEiJ_G0020932	Gm10061 (MGP_CAROLIEiJ_G0020933)	Gm9789 (MGP_CAROLIEiJ_G0020934)	Gm7735 (MGP_CAROLIEiJ_G0020935)	MGP_CAROLIEiJ_G0020936	Krtap21-1 (MGP_CAROLIEiJ_G0020937)	Krtap6-2 (MGP_CAROLIEiJ_G0020938)	Krtap8-1 (MGP_CAROLIEiJ_G0020939)	Krtap7-1 (MGP_CAROLIEiJ_G0020940)	Krtap11-1 (MGP_CAROLIEiJ_G0020941) #15	Tiam1 (MGP_CAROLIEiJ_G0020942) #18	Sod1 (MGP_CAROLIEiJ_G0020943) #22	Scaf4 (MGP_CAROLIEiJ_G0020944) #23	Hunk (MGP_CAROLIEiJ_G0020945) #24	Mis18a (MGP_CAROLIEiJ_G0020946) #25	Mrap (MGP_CAROLIEiJ_G0020947) #26	Urb1 (MGP_CAROLIEiJ_G0020948) #27	Eva1c (MGP_CAROLIEiJ_G0020949) #28	Cfap298 (MGP_CAROLIEiJ_G0020950) #29	Synj1 (MGP_CAROLIEiJ_G0020951) #30	Paxbp1 (MGP_CAROLIEiJ_G0020952) #31	4932438H23Rik (MGP_CAROLIEiJ_G0020953) #32	MGP_CAROLIEiJ_G0020954	Olig2 (MGP_CAROLIEiJ_G0020955) #33	Olig1 (MGP_CAROLIEiJ_G0020956)	Ifnar2 (MGP_CAROLIEiJ_G0020957) #34	MGP_CAROLIEiJ_G0020958
Shrew mouse	MODERN SPECIES	3	MGP_PahariEiJ_G0016633	MGP_PahariEiJ_G0016634	MGP_PahariEiJ_G0016635	Krtap6-3 (MGP_PahariEiJ_G0016636)	MGP_PahariEiJ_G0016637	Gm10061 (MGP_PahariEiJ_G0016638)	MGP_PahariEiJ_G0016639	Gm7735 (MGP_PahariEiJ_G0016640)	MGP_PahariEiJ_G0016641	Krtap21-1 (MGP_PahariEiJ_G0016642)	MGP_PahariEiJ_G0016643	Krtap8-1 (MGP_PahariEiJ_G0016644)	Krtap7-1 (MGP_PahariEiJ_G0016645)	Krtap11-1 (MGP_PahariEiJ_G0016646) #15	Tiam1 (MGP_PahariEiJ_G0016647) #18	Sod1 (MGP_PahariEiJ_G0016648) #22	Scaf4 (MGP_PahariEiJ_G0016649) #23	Hunk (MGP_PahariEiJ_G0016650) #24	Mis18a (MGP_PahariEiJ_G0016651) #25	Mrap (MGP_PahariEiJ_G0016652) #26	Urb1 (MGP_PahariEiJ_G0016653) #27	Eva1c (MGP_PahariEiJ_G0016654) #28	Cfap298 (MGP_PahariEiJ_G0016655) #29	Synj1 (MGP_PahariEiJ_G0016656) #30	Paxbp1 (MGP_PahariEiJ_G0016657) #31	MGP_PahariEiJ_G0016658 #32	MGP_PahariEiJ_G0016659	Olig2 (MGP_PahariEiJ_G0016660) #33	Olig1 (MGP_PahariEiJ_G0016661)	Ifnar2 (MGP_PahariEiJ_G0016662) #34	MGP_PahariEiJ_G0016663
Rat	MODERN SPECIES	2	LOC102550973 (ENSRNOG00000066669)	Krtap19-5 (ENSRNOG00000040068)	AABR07033579.1 (ENSRNOG00000001566)	Krtap16-5 (ENSRNOG00000040064)	AABR07033579.3 (ENSRNOG00000061897)	ENSRNOG00000071041	LOC102551497 (ENSRNOG00000057156)	LOC102551201 (ENSRNOG00000055713)	LOC102551771 (ENSRNOG00000050693)	LOC102552244 (ENSRNOG00000040054)	Krtap8-1 (ENSRNOG00000043471)	AABR07033607.1 (ENSRNOG00000040039)	Krtap7-1 (ENSRNOG00000043017)	Krtap11-1 (ENSRNOG00000027478) #15	Tiam1 (ENSRNOG00000021569) #18	Sod1 (ENSRNOG00000002115) #22	Scaf4 (ENSRNOG00000002104) #23	Hunk (ENSRNOG00000002092) #24	Mis18a (ENSRNOG00000021555) #25	Mrap (ENSRNOG00000021524) #26	Urb1 (ENSRNOG00000002080) #27	Eva1c (ENSRNOG00000002072) #28	Cfap298 (ENSRNOG00000021399) #29	Synj1 (ENSRNOG00000002051) #30	Paxbp1 (ENSRNOG00000002036) #31	RGD1562726 (ENSRNOG00000028670) #32	Olig2 (ENSRNOG00000028658) #33	Olig1 (ENSRNOG00000028648)	Ifnar2 (ENSRNOG00000045668) #34	Il10rb (ENSRNOG00000028638)	Ifnar1 (ENSRNOG00000028594) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	947	ENSNGAG00000001816	ENSNGAG00000013988	ENSNGAG00000014050	ENSNGAG00000020393	ENSNGAG00000013841	ENSNGAG00000014164	ENSNGAG00000018613	ENSNGAG00000001337	ENSNGAG00000001063	ENSNGAG00000000875	ENSNGAG00000013922	ENSNGAG00000019408	Krtap8-1 (ENSNGAG00000013891)	Krtap11-1 (ENSNGAG00000021045) #15	Tiam1 (ENSNGAG00000017821) #18	Sod1 (ENSNGAG00000015416) #22	Scaf4 (ENSNGAG00000005214) #23	ENSNGAG00000000191 #24	Mis18a (ENSNGAG00000019424) #25	Mrap (ENSNGAG00000018367) #26	Urb1 (ENSNGAG00000001905) #27	Eva1c (ENSNGAG00000013376) #28	Cfap298 (ENSNGAG00000009170) #29	Synj1 (ENSNGAG00000000453) #30	Paxbp1 (ENSNGAG00000020646) #31	Olig2 (ENSNGAG00000019973) #33	Olig1 (ENSNGAG00000019569)	Ifnar2 (ENSNGAG00000003813) #34	Il10rb (ENSNGAG00000000235)	Ifngr2 (ENSNGAG00000001151) #36	Tmem50b (ENSNGAG00000014132) #37
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	54	2310061N02Rik (ENSJJAG00000020612) ##14	ENSJJAG00000016810	ENSJJAG00000011706	ENSJJAG00000011064	ENSJJAG00000016567	ENSJJAG00000011498	ENSJJAG00000011799	ENSJJAG00000011237	ENSJJAG00000012751	ENSJJAG00000016258	ENSJJAG00000013970	Krtap8-1 (ENSJJAG00000012189)	Krtap7-1 (ENSJJAG00000012209)	Krtap11-1 (ENSJJAG00000002454) #15	Tiam1 (ENSJJAG00000019021) #18	ENSJJAG00000013595 #22	Scaf4 (ENSJJAG00000019447) #23	ENSJJAG00000011536	Hunk (ENSJJAG00000014419) #24	Mis18a (ENSJJAG00000006131) #25	Mrap (ENSJJAG00000015503) #26	Eva1c (ENSJJAG00000011026) #28	Cfap298 (ENSJJAG00000017189) #29	Synj1 (ENSJJAG00000020168) #30	Paxbp1 (ENSJJAG00000004137) #31	ENSJJAG00000023322	Olig2 (ENSJJAG00000019725) #33	Il10rb (ENSJJAG00000021402)	ENSJJAG00000013272 #35	Ifngr2 (ENSJJAG00000000609) #36	Tmem50b (ENSJJAG00000020263) #37
Lesser Egyptian jerboa	MODERN SPECIES	76	ENSJJAG00000013895	ENSJJAG00000011048	ENSJJAG00000022559	Mto1 (ENSJJAG00000006640)	Eef1a1 (ENSJJAG00000021540)	Slc17a5 (ENSJJAG00000012671)	ENSJJAG00000023397	ENSJJAG00000019028	ENSJJAG00000020395	ENSJJAG00000009738	Cd109 (ENSJJAG00000018810)	ENSJJAG00000008007	ENSJJAG00000013875	ENSJJAG00000004765	Col12a1 (ENSJJAG00000021947)	ENSJJAG00000002895 #22	Cox7a2 (ENSJJAG00000019442)	Tmem30a (ENSJJAG00000015851)	Filip1 (ENSJJAG00000014437)	ENSJJAG00000008502	Senp6 (ENSJJAG00000022873)	Myo6 (ENSJJAG00000021392)	Impg1 (ENSJJAG00000022816)	ENSJJAG00000006614	ENSJJAG00000013199	Htr1b (ENSJJAG00000018451)	Mei4 (ENSJJAG00000018138)	ENSJJAG00000005450	ENSJJAG00000014817	Irak1bp1 (ENSJJAG00000021600)	ENSJJAG00000007166
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00980000203465	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013.c	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00730000111539 #9	ENSGT01100000264006	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Hystricomorpha_a	ANCESTRAL SPECIES	37	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013.c	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00730000111539 #9	ENSGT01100000264006	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Guinea pig	MODERN SPECIES	52	ENSCPOG00000036364	ENSCPOG00000037425	ENSCPOG00000034675	ENSCPOG00000038350	ENSCPOG00000034483	ENSCPOG00000010897	ENSCPOG00000008863	ENSCPOG00000002608	ENSCPOG00000033618	ENSCPOG00000037899	ENSCPOG00000002220	KRTAP8-1 (ENSCPOG00000005580)	KRTAP7-1 (ENSCPOG00000031819)	KRTAP11-1 (ENSCPOG00000036168) #15	TIAM1 (ENSCPOG00000013606) #18	SOD1 (ENSCPOG00000014223) #22	SCAF4 (ENSCPOG00000012443) #23	HUNK (ENSCPOG00000010546) #24	MIS18A (ENSCPOG00000027258) #25	ENSCPOG00000034158	URB1 (ENSCPOG00000006748) #27	EVA1C (ENSCPOG00000025257) #28	CFAP298 (ENSCPOG00000036050) #29	SYNJ1 (ENSCPOG00000012182) #30	PAXBP1 (ENSCPOG00000012439) #31	C21orf62 (ENSCPOG00000032349) #32	OLIG2 (ENSCPOG00000011590) #33	OLIG1 (ENSCPOG00000030289)	ENSCPOG00000037614 #34	IL10RB (ENSCPOG00000020318)	IFNAR1 (ENSCPOG00000010248) #35
Hystricomorpha_b	ANCESTRAL SPECIES	34	ENSGT00390000007224.b	ENSGT00940000156013.c	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00900000142979	ENSGT01040000243806	ENSGT01100000264006	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00900000143330	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	266														KRTAP11-1 (ENSODEG00000018872) #15	TIAM1 (ENSODEG00000002827) #18	ENSODEG00000002788 #22	SCAF4 (ENSODEG00000002718) #23	ENSODEG00000002680	HUNK (ENSODEG00000002662) #24	MIS18A (ENSODEG00000002641) #25	URB1 (ENSODEG00000002587) #27	ENSODEG00000002530	EVA1C (ENSODEG00000002480) #28	ENSODEG00000002448 #29	ENSODEG00000002435	SYNJ1 (ENSODEG00000002409) #30	PAXBP1 (ENSODEG00000002385) #31	C21orf62 (ENSODEG00000002365) #32	OLIG2 (ENSODEG00000018811) #33	OLIG1 (ENSODEG00000019062)	IL10RB (ENSODEG00000002346)
Degu	MODERN SPECIES	51	CHUK (ENSODEG00000016580)	CWF19L1 (ENSODEG00000017213)	BLOC1S2 (ENSODEG00000016697)	PKD2L1 (ENSODEG00000016727)	ENSODEG00000016508	ENSODEG00000017085	ENSODEG00000020452	SYCE1 (ENSODEG00000016895)	CYP2E1 (ENSODEG00000016862)	ENSODEG00000020445	ENSODEG00000020400	ENSODEG00000017267	ENSODEG00000016628	ENSODEG00000016788	ENSODEG00000016399	ENSODEG00000020496 #22	MTG1 (ENSODEG00000016890)	ENSODEG00000020397	PAOX (ENSODEG00000016852)	ECHS1 (ENSODEG00000016897)	FUOM (ENSODEG00000017553)	ENSODEG00000016871	CALY (ENSODEG00000016902)	ENSODEG00000017202	ZNF511 (ENSODEG00000017284)	TUBGCP2 (ENSODEG00000016798)	ADAM8 (ENSODEG00000017169)	ENSODEG00000017114	ENSODEG00000016782	KNDC1 (ENSODEG00000017208)	ADGRA1 (ENSODEG00000016894)
Degu	DUPLICATION
Degu	MODERN SPECIES	86	SIT1 (ENSODEG00000014721)	CD72 (ENSODEG00000014802)	TESK1 (ENSODEG00000014973)	FAM166B (ENSODEG00000014541)	ENSODEG00000015419	ENSODEG00000014518	ENSODEG00000015095	ENSODEG00000014965	ATOSB (ENSODEG00000014990)	ENSODEG00000014316	PIGO (ENSODEG00000014589)	FANCG (ENSODEG00000016884)	VCP (ENSODEG00000014663)	ENSODEG00000014665	PHF24 (ENSODEG00000015569)	ENSODEG00000020209 #22	ENSODEG00000014905	CCL21 (ENSODEG00000015431)	CCL19 (ENSODEG00000014872)	ENSODEG00000014493	ENSODEG00000015377	IL11RA (ENSODEG00000014692)	GALT (ENSODEG00000015232)	SIGMAR1 (ENSODEG00000015160)	ARID3C (ENSODEG00000015133)	ENSODEG00000015225	RPP25L (ENSODEG00000020340)	CNTFR (ENSODEG00000014542)	ENHO (ENSODEG00000020230)	DNAI1 (ENSODEG00000015545)	FAM219A (ENSODEG00000015774)
Degu	MODERN SPECIES	61	CAMKMT (ENSODEG00000013111)	ENSODEG00000019899	ENSODEG00000019894	PREPL (ENSODEG00000012834)	SLC3A1 (ENSODEG00000011768)	PPM1B (ENSODEG00000012106)	ENSODEG00000011737	ENSODEG00000020039	ENSODEG00000019947	LRPPRC (ENSODEG00000011211)	ABCG8 (ENSODEG00000012555)	ABCG5 (ENSODEG00000010535)	DYNC2LI1 (ENSODEG00000011054)	PLEKHH2 (ENSODEG00000012982)	ENSODEG00000010547	ENSODEG00000012111 #22	HAAO (ENSODEG00000010886)	ENSODEG00000019803	ENSODEG00000011091	ENSODEG00000012097	KCNG3 (ENSODEG00000014536)	ENSODEG00000011166	COX7A2L (ENSODEG00000011433)	EML4 (ENSODEG00000011507)	PKDCC (ENSODEG00000014354)	ENSODEG00000010490	ENSODEG00000019723	ENSODEG00000010136	ENSODEG00000019775	ENSODEG00000009978	SLC8A1 (ENSODEG00000010025)
Long-tailed chinchilla	MODERN SPECIES	114	ENSCLAG00000017714	ENSCLAG00000017654	ENSCLAG00000006457	ENSCLAG00000006527	ENSCLAG00000017817	ENSCLAG00000017943	ENSCLAG00000014498	ENSCLAG00000018034	ENSCLAG00000017706	ENSCLAG00000017646	ENSCLAG00000004957	KRTAP8-1 (ENSCLAG00000017644)	KRTAP7-1 (ENSCLAG00000005387)	KRTAP11-1 (ENSCLAG00000017626) #15	TIAM1 (ENSCLAG00000005734) #18	SOD1 (ENSCLAG00000005820) #22	SCAF4 (ENSCLAG00000006298) #23	HUNK (ENSCLAG00000005512) #24	MIS18A (ENSCLAG00000005843) #25	ENSCLAG00000006933	URB1 (ENSCLAG00000005262) #27	EVA1C (ENSCLAG00000007978) #28	CFAP298 (ENSCLAG00000010614) #29	SYNJ1 (ENSCLAG00000009796) #30	PAXBP1 (ENSCLAG00000007450) #31	C21orf62 (ENSCLAG00000009787) #32	OLIG2 (ENSCLAG00000009979) #33	OLIG1 (ENSCLAG00000010235)	ENSCLAG00000004756 #34	IL10RB (ENSCLAG00000005404)	ENSCLAG00000007513
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000042795	ENSHGLG00000035362	ENSHGLG00000032425	ENSHGLG00000037287	KRTAP19-3 (ENSHGLG00000046162)	ENSHGLG00000042443	ENSHGLG00000037045	ENSHGLG00000042704	ENSHGLG00000050837	ENSHGLG00000046623	ENSHGLG00000045588	ENSHGLG00000035151	ENSHGLG00000033738	KRTAP7-1 (ENSHGLG00000020396)	ENSHGLG00000050043 #18	SOD1 (ENSHGLG00000037309) #22	ENSHGLG00000014687	ENSHGLG00000032814	HUNK (ENSHGLG00000014832) #24	ENSHGLG00000040584	MIS18A (ENSHGLG00000004702) #25	EVA1C (ENSHGLG00000007768) #28	CFAP298 (ENSHGLG00000049021) #29	SYNJ1 (ENSHGLG00000006420) #30	PAXBP1 (ENSHGLG00000011800) #31	C21orf62 (ENSHGLG00000038795) #32	ENSHGLG00000045653	OLIG2 (ENSHGLG00000049807) #33	OLIG1 (ENSHGLG00000041895)	ENSHGLG00000017470 #34	IL10RB (ENSHGLG00000015427)
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00980000203465	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Marmotini	ANCESTRAL SPECIES	13	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00950000186330	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Marmotini_b	ANCESTRAL SPECIES	30	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00950000186330	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Squirrel	MODERN SPECIES	100	ENSSTOG00000008511	ENSSTOG00000033713	ENSSTOG00000025503	ENSSTOG00000031737	ENSSTOG00000028509	ENSSTOG00000034672	ENSSTOG00000019823	ENSSTOG00000031728	ENSSTOG00000019958	ENSSTOG00000034286	KRTAP8-1 (ENSSTOG00000026383)	KRTAP7-1 (ENSSTOG00000021190)	KRTAP11-1 (ENSSTOG00000024635) #15	TIAM1 (ENSSTOG00000005851) #18	ENSSTOG00000030549	SOD1 (ENSSTOG00000004434) #22	SCAF4 (ENSSTOG00000004450) #23	HUNK (ENSSTOG00000024744) #24	MIS18A (ENSSTOG00000004511) #25	ENSSTOG00000021442 #26	URB1 (ENSSTOG00000004539) #27	EVA1C (ENSSTOG00000026039) #28	CFAP298 (ENSSTOG00000015799) #29	SYNJ1 (ENSSTOG00000015806) #30	PAXBP1 (ENSSTOG00000014055) #31	C21orf62 (ENSSTOG00000032411) #32	OLIG2 (ENSSTOG00000020899) #33	OLIG1 (ENSSTOG00000027713)	IFNAR2 (ENSSTOG00000001265) #34	IL10RB (ENSSTOG00000001273)	IFNAR1 (ENSSTOG00000014989) #35
Arctic ground squirrel	MODERN SPECIES	121										ENSUPAG00010001033	ENSUPAG00010001037	KRTAP8-1 (ENSUPAG00010001044)	KRTAP7-1 (ENSUPAG00010001047)	KRTAP11-1 (ENSUPAG00010001054) #15	TIAM1 (ENSUPAG00010001067) #18	SOD1 (ENSUPAG00010001261) #22	SCAF4 (ENSUPAG00010001272) #23	HUNK (ENSUPAG00010001365) #24	MIS18A (ENSUPAG00010001398) #25	MRAP (ENSUPAG00010001416) #26	URB1 (ENSUPAG00010001432) #27	EVA1C (ENSUPAG00010001637) #28	CFAP298 (ENSUPAG00010001693) #29	SYNJ1 (ENSUPAG00010001714) #30	PAXBP1 (ENSUPAG00010001936) #31	C21orf62 (ENSUPAG00010001971) #32	OLIG2 (ENSUPAG00010001977) #33	IFNAR2 (ENSUPAG00010001980) #34	IL10RB (ENSUPAG00010001990)	IFNAR1 (ENSUPAG00010002002) #35	IFNGR2 (ENSUPAG00010002009) #36
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	522																ENSMMMG00000001091 #22
Alpin marmot	MODERN SPECIES	4	ENSMMMG00000018310	ENSMMMG00000018322 #10	ENSMMMG00000018332 #12	ENSMMMG00000018389	KRTAP15-1 (ENSMMMG00000018392) #14	ENSMMMG00000018401	ENSMMMG00000018414	ENSMMMG00000018445	ENSMMMG00000018449	ENSMMMG00000018510	KRTAP8-1 (ENSMMMG00000018516)	KRTAP7-1 (ENSMMMG00000018520)	KRTAP11-1 (ENSMMMG00000018525) #15	TIAM1 (ENSMMMG00000018539) #18	ENSMMMG00000018610	SOD1 (ENSMMMG00000000101) #22	SCAF4 (ENSMMMG00000000119) #23	HUNK (ENSMMMG00000000145) #24	MIS18A (ENSMMMG00000000183) #25	MRAP (ENSMMMG00000000197) #26	URB1 (ENSMMMG00000000218) #27	EVA1C (ENSMMMG00000000337) #28	ENSMMMG00000000442	CFAP298 (ENSMMMG00000000468) #29	SYNJ1 (ENSMMMG00000000553) #30	PAXBP1 (ENSMMMG00000000713) #31	C21orf62 (ENSMMMG00000000764) #32	OLIG2 (ENSMMMG00000000776) #33	IFNAR2 (ENSMMMG00000000794) #34	IL10RB (ENSMMMG00000000798)	ENSMMMG00000000809
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	KRTAP27-1 (ENSSVLG00005009977) #9	ENSSVLG00005009956 ##14	ENSSVLG00005009892	ENSSVLG00005009876 #10	KRTAP13-3 (ENSSVLG00005009860)	ENSSVLG00005009818 #14	KRTAP15-1 (ENSSVLG00005009803) #14	KRTAP19-2 (ENSSVLG00005009791)	KRTAP19-5 (ENSSVLG00005009758)	ENSSVLG00005009741	ENSSVLG00005009585	KRTAP8-1 (ENSSVLG00005009568)	KRTAP7-1 (ENSSVLG00005009553)	KRTAP11-1 (ENSSVLG00005009539) #15	TIAM1 (ENSSVLG00005009172) #18	SOD1 (ENSSVLG00005009037) #22	SCAF4 (ENSSVLG00005008966) #23	ENSSVLG00005008885 #24	MIS18A (ENSSVLG00005008836) #25	ENSSVLG00005008802 #26	ENSSVLG00005008770	URB1 (ENSSVLG00005008739) #27	EVA1C (ENSSVLG00005008630) #28	CFAP298 (ENSSVLG00005024931) #29	SYNJ1 (ENSSVLG00005024795) #30	PAXBP1 (ENSSVLG00005024598) #31	C21orf62 (ENSSVLG00005024581) #32	OLIG2 (ENSSVLG00005024572) #33	OLIG1 (ENSSVLG00005024562)	ENSSVLG00005024535 #34	IL10RB (ENSSVLG00005024491)
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005014497	ENSSVLG00005014453	ENSSVLG00005014416	ENSSVLG00005014346	ENSSVLG00005014167	ENSSVLG00005014115	ENSSVLG00005014095	ENSSVLG00005014041	ENSSVLG00005013973	ENSSVLG00005013905	ENSSVLG00005013859	ENSSVLG00005013827	ENSSVLG00005013742	ENSSVLG00005013716	ENSSVLG00005013629	ENSSVLG00005013588 #22	ENSSVLG00005013534	ENSSVLG00005013350	ENSSVLG00005013277	ENSSVLG00005022743	ENSSVLG00005022724	ENSSVLG00005022663	ENSSVLG00005022597	ENSSVLG00005022585	ENSSVLG00005022548	ENSSVLG00005022521	ENSSVLG00005022507	ENSSVLG00005022495	ENSSVLG00005022477	ENSSVLG00005022457	ENSSVLG00005022440
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000162109.C ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Eulipotyphla	ANCESTRAL SPECIES	2209																ENSGT00940000155551 #22	ENSGT00530000063946.a #23
Common shrew	MODERN SPECIES	2976																SOD1 (ENSSARG00000009985) #22	SCAF4 (ENSSARG00000009994) #23
Hedgehog	MODERN SPECIES	3928																SOD1 (ENSEEUG00000015905) #22	ENSEEUG00000015913
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00730000111539 #9	ENSGT00940000162109.C ##14	ENSGT00940000162756 #10	ENSGT00940000161951	ENSGT00940000162109.B ##14	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000162109.B ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00860000134229	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000162109.B ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00860000134229	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Felidae	DUPLICATION
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.B.h ##14	ENSGT00940000162756.c #10	ENSGT00940000162109.B.g.a ##14	ENSGT00940000161951	ENSGT00980000203465	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.e.a #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00940000178209	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Panthera	ANCESTRAL SPECIES	17	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162109.B.h ##14	ENSGT00940000162756.c #10	ENSGT00940000162756.d #10	ENSGT00940000161951	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.e.a #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Panthera_a	ANCESTRAL SPECIES	21	ENSGT00940000162109.B.h ##14	ENSGT00940000162756.c #10	ENSGT00940000162756.d #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183970	ENSGT00950000183472	ENSGT00950000183564	ENSGT00950000183791	ENSGT00950000183533	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.e.a #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
leopard	MODERN SPECIES	81												KRTAP8-1 (ENSPPRG00000020895)	KRTAP7-1 (ENSPPRG00000020882)	KRTAP11-1 (ENSPPRG00000020873) #15	TIAM1 (ENSPPRG00000002849) #18	SOD1 (ENSPPRG00000001437) #22	SCAF4 (ENSPPRG00000000635) #23	HUNK (ENSPPRG00000022852) #24	MIS18A (ENSPPRG00000022990) #25	MRAP (ENSPPRG00000022999) #26	URB1 (ENSPPRG00000023131) #27	EVA1C (ENSPPRG00000023151) #28	CFAP298 (ENSPPRG00000023279) #29	SYNJ1 (ENSPPRG00000023469) #30	PAXBP1 (ENSPPRG00000024352) #31	C21orf62 (ENSPPRG00000024495) #32	OLIG2 (ENSPPRG00000020693) #33	OLIG1 (ENSPPRG00000020678)	IFNAR2 (ENSPPRG00000024508) #34	IL10RB (ENSPPRG00000024526)	IFNAR1 (ENSPPRG00000024594) #35
lion	MODERN SPECIES	9	KRTAP27-1 (ENSPLOG00000005754) #9	ENSPLOG00000005769 ##14	ENSPLOG00000005781 #10	ENSPLOG00000005790 #10	ENSPLOG00000005804 ##14	ENSPLOG00000005813 #14	ENSPLOG00000005839 ##14	KRTAP13-3 (ENSPLOG00000005853)	KRTAP15-1 (ENSPLOG00000005872) #14	KRTAP19-8 (ENSPLOG00000005903)	KRTAP22-1 (ENSPLOG00000005933)	KRTAP8-1 (ENSPLOG00000005994)	KRTAP7-1 (ENSPLOG00000006013)	KRTAP11-1 (ENSPLOG00000006031) #15	TIAM1 (ENSPLOG00000006091) #18	ENSPLOG00000006257 #22	SCAF4 (ENSPLOG00000006292) #23	HUNK (ENSPLOG00000006371) #24	MIS18A (ENSPLOG00000006491) #25	ENSPLOG00000006518	URB1 (ENSPLOG00000006539) #27	EVA1C (ENSPLOG00000006595) #28	CFAP298 (ENSPLOG00000006706) #29	SYNJ1 (ENSPLOG00000006886) #30	PAXBP1 (ENSPLOG00000007200) #31	C21orf62 (ENSPLOG00000007307) #32	OLIG2 (ENSPLOG00000007330) #33	OLIG1 (ENSPLOG00000007344)	IFNAR2 (ENSPLOG00000007359) #34	IL10RB (ENSPLOG00000007392)	IFNAR1 (ENSPLOG00000007412) #35
Cat	MODERN SPECIES	240	CLDN8 (ENSFCAG00000009650)	KRTAP24-1 (ENSFCAG00000045459)	KRTAP25-1 (ENSFCAG00000041260)	KRTAP26-1 (ENSFCAG00000040719) #7	KRTAP27-1 (ENSFCAG00000037019) #9	ENSFCAG00000014480 ##14	ENSFCAG00000014479 #10	ENSFCAG00000040662 ##14	KRTAP13-3 (ENSFCAG00000045640)	KRTAP15-1 (ENSFCAG00000025515) #14	ENSFCAG00000051052	KRTAP8-1 (ENSFCAG00000026050)	KRTAP7-1 (ENSFCAG00000022570)	KRTAP11-1 (ENSFCAG00000045393) #15	TIAM1 (ENSFCAG00000002364) #18	ENSFCAG00000002225 #22	SCAF4 (ENSFCAG00000002228) #23	HUNK (ENSFCAG00000028905) #24	MIS18A (ENSFCAG00000023285) #25	ENSFCAG00000044375 #26	URB1 (ENSFCAG00000002177) #27	EVA1C (ENSFCAG00000012496) #28	ENSFCAG00000048385	SYNJ1 (ENSFCAG00000012498) #30	PAXBP1 (ENSFCAG00000012499) #31	CC2H21orf62 (ENSFCAG00000012503) #32	OLIG2 (ENSFCAG00000033403) #33	OLIG1 (ENSFCAG00000042214)	IFNAR2 (ENSFCAG00000031700) #34	IL10RB (ENSFCAG00000012214)	IFNAR1 (ENSFCAG00000024317) #35
Felidae	ANCESTRAL SPECIES																	ENSGT00940000155551.e.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00940000155551.e.b #22
Tiger	MODERN SPECIES	370												KRTAP8-1 (ENSPTIG00000008039)	KRTAP7-1 (ENSPTIG00000008045)	KRTAP11-1 (ENSPTIG00000008051) #15	TIAM1 (ENSPTIG00000021469) #18	SOD1 (ENSPTIG00000021555) #22	SCAF4 (ENSPTIG00000021578) #23	HUNK (ENSPTIG00000021583) #24
Cat	MODERN SPECIES	2	RASSF2 (ENSFCAG00000028725)	ENSFCAG00000053205	SLC23A2 (ENSFCAG00000024001)	ENSFCAG00000036587	PCNA (ENSFCAG00000009068)	CDS2 (ENSFCAG00000031257)	ENSFCAG00000024563	PROKR2 (ENSFCAG00000035343)	GPCPD1 (ENSFCAG00000018300)	CHGB (ENSFCAG00000000220)	TRMT6 (ENSFCAG00000003102)	MCM8 (ENSFCAG00000011524)	CRLS1 (ENSFCAG00000023647)	LRRN4 (ENSFCAG00000001198)	FERMT1 (ENSFCAG00000019220)	ENSFCAG00000029904 #22	BMP2 (ENSFCAG00000037659)	HAO1 (ENSFCAG00000009832)	TMX4 (ENSFCAG00000040472)	PLCB1 (ENSFCAG00000014951)	PLCB4 (ENSFCAG00000005949)	LAMP5 (ENSFCAG00000005954)	PAK5 (ENSFCAG00000005955)	ENSFCAG00000006586	ENSFCAG00000048283	ANKEF1 (ENSFCAG00000009160)	SNAP25 (ENSFCAG00000010050)	MKKS (ENSFCAG00000008542)	SLX4IP (ENSFCAG00000022559)	JAG1 (ENSFCAG00000002195)	BTBD3 (ENSFCAG00000030089)
Felidae	ANCESTRAL SPECIES																	ENSGT00940000155551.f #22
Panthera	ANCESTRAL SPECIES																	ENSGT00940000155551.f #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00940000155551.f #22
lion	MODERN SPECIES	9	ROBO1 (ENSPLOG00000014250)	ENSPLOG00000014139	ENSPLOG00000014098	GBE1 (ENSPLOG00000013937)	ENSPLOG00000013875	CADM2 (ENSPLOG00000013632)	ENSPLOG00000013561	VGLL3 (ENSPLOG00000013497)	CHMP2B (ENSPLOG00000013401)	POU1F1 (ENSPLOG00000013268)	HTR1F (ENSPLOG00000013246)	CGGBP1 (ENSPLOG00000013226)	ZNF654 (ENSPLOG00000013196)	C3orf38 (ENSPLOG00000013154)	ENSPLOG00000013137	ENSPLOG00000013102 #22	EPHA3 (ENSPLOG00000012751)	PROS1 (ENSPLOG00000012461)	STX19 (ENSPLOG00000012404)	ARL13B (ENSPLOG00000012320)	NSUN3 (ENSPLOG00000012279)	EPHA6 (ENSPLOG00000012019)	ARL6 (ENSPLOG00000011951)	ENSPLOG00000011919	CRYBG3 (ENSPLOG00000011497)	RIOX2 (ENSPLOG00000011386)	GABRR3 (ENSPLOG00000011321)	ENSPLOG00000011276	ENSPLOG00000011252	ENSPLOG00000011136	ENSPLOG00000011104
Caniformia	ANCESTRAL SPECIES		ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000162109.B ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000183416	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Canidae	ANCESTRAL SPECIES	39	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162109.B.i.a.b ##14	ENSGT00940000162109.B.i.b ##14	ENSGT00940000162756 #10	ENSGT00940000162109.B.i.a.a ##14	ENSGT00940000162109.A #14	ENSGT00940000162109.B.j.b ##14	ENSGT00940000162109.B.j.a ##14	ENSGT00940000161951	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000169647	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Canis_lupus	ANCESTRAL SPECIES	38	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162109.B.i.a.b ##14	ENSGT00940000162109.B.i.b ##14	ENSGT00940000162756 #10	ENSGT00940000162109.B.i.a.a ##14	ENSGT01100000266216	ENSGT01090000261056	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000169647	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Dog	MODERN SPECIES	24	KRTAP25-1 (ENSCAFG00845021344)	KRTAP27-1 (ENSCAFG00845021363) #9	KRTAP13-4 (ENSCAFG00845021380) #10	ENSCAFG00845021400 ##14	ENSCAFG00845021418	ENSCAFG00845021436	KRTAP13-3 (ENSCAFG00845021477)	KRTAP22-1 (ENSCAFG00845021623)	ENSCAFG00845021700	KRTAP21-1 (ENSCAFG00845021718)	ENSCAFG00845021750	KRTAP8-1 (ENSCAFG00845021773)	KRTAP7-1 (ENSCAFG00845021796)	KRTAP11-1 (ENSCAFG00845021816) #15	TIAM1 (ENSCAFG00845021944) #18	SOD1 (ENSCAFG00845022725) #22	SCAF4 (ENSCAFG00845023056) #23	HUNK (ENSCAFG00845023628) #24	MIS18A (ENSCAFG00845023751) #25	ENSCAFG00845023798	URB1 (ENSCAFG00845023897) #27	EVA1C (ENSCAFG00845024607) #28	CFAP298 (ENSCAFG00845024773) #29	SYNJ1 (ENSCAFG00845025045) #30	PAXBP1 (ENSCAFG00845026174)	C31H21orf62 (ENSCAFG00845026309) #32	OLIG2 (ENSCAFG00845026359) #33	OLIG1 (ENSCAFG00845026412)	IFNAR2 (ENSCAFG00845026478) #34	IL10RB (ENSCAFG00845026648)	IFNAR1 (ENSCAFG00845026778) #35
Dingo	MODERN SPECIES	328	CLDN17 (ENSCAFG00020026176)	CLDN8 (ENSCAFG00020026171)	ENSCAFG00020026169	KRTAP27-1 (ENSCAFG00020026167) #9	ENSCAFG00020026166 ##14	ENSCAFG00020026164 ##14	ENSCAFG00020026162 ##14	ENSCAFG00020026161	ENSCAFG00020026160 ##14	ENSCAFG00020026158 ##14	KRTAP13-3 (ENSCAFG00020026157)	KRTAP8-1 (ENSCAFG00020026156)	KRTAP7-1 (ENSCAFG00020026155)	KRTAP11-1 (ENSCAFG00020026154) #15	TIAM1 (ENSCAFG00020026063) #18	SOD1 (ENSCAFG00020026042) #22	SCAF4 (ENSCAFG00020026019) #23	HUNK (ENSCAFG00020026005) #24	MIS18A (ENSCAFG00020026001) #25	ENSCAFG00020025994 #27	ENSCAFG00020025987 #27	ENSCAFG00020025985	EVA1C (ENSCAFG00020025979) #28	CFAP298 (ENSCAFG00020025972) #29	SYNJ1 (ENSCAFG00020025776) #30	ENSCAFG00020025666	C21orf62 (ENSCAFG00020025657) #32	OLIG2 (ENSCAFG00020025653) #33	OLIG1 (ENSCAFG00020025652)	IFNAR2 (ENSCAFG00020025644) #34	IL10RB (ENSCAFG00020025642)
Red fox	MODERN SPECIES	204																ENSVVUG00000002967 #22	SCAF4 (ENSVVUG00000002953) #23	HUNK (ENSVVUG00000002915) #24	MIS18A (ENSVVUG00000002895) #25	URB1 (ENSVVUG00000000551) #27	ENSVVUG00000000165	EVA1C (ENSVVUG00000000091)	CFAP298 (ENSVVUG00000023156) #29	SYNJ1 (ENSVVUG00000023125) #30	PAXBP1 (ENSVVUG00000023034)	C21orf62 (ENSVVUG00000023026) #32	OLIG2 (ENSVVUG00000023022) #33	IFNAR2 (ENSVVUG00000023014) #34	IL10RB (ENSVVUG00000023000)	IFNAR1 (ENSVVUG00000022996) #35	IFNGR2 (ENSVVUG00000022995) #36
Caniformia_b	ANCESTRAL SPECIES		ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162109.B ##14	ENSGT00950000183416	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Mustelinae	ANCESTRAL SPECIES	90	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162109.B ##14	ENSGT00950000183416	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00940000169647	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Ferret	MODERN SPECIES	219	ENSMPUG00000001017	ADAMTS5 (ENSMPUG00000001019)	N6AMT1 (ENSMPUG00000001030)	LTN1 (ENSMPUG00000001032)	RWDD2B (ENSMPUG00000001037)	USP16 (ENSMPUG00000001038)	CCT8 (ENSMPUG00000001044)	MAP3K7CL (ENSMPUG00000001048)	ENSMPUG00000019200	BACH1 (ENSMPUG00000001053)	GRIK1 (ENSMPUG00000001055)	CLDN8 (ENSMPUG00000019207)	ENSMPUG00000019215	KRTAP11-1 (ENSMPUG00000019219) #15	TIAM1 (ENSMPUG00000001062) #18	SOD1 (ENSMPUG00000001069) #22	SCAF4 (ENSMPUG00000001078) #23	HUNK (ENSMPUG00000001113) #24	MIS18A (ENSMPUG00000001117) #25	ENSMPUG00000001120 #26	URB1 (ENSMPUG00000001123) #27	ENSMPUG00000001134	EVA1C (ENSMPUG00000001147) #28	CFAP298 (ENSMPUG00000001149) #29	SYNJ1 (ENSMPUG00000001153) #30	PAXBP1 (ENSMPUG00000001224) #31	OLIG2 (ENSMPUG00000001227) #33	IFNAR2 (ENSMPUG00000001229) #34	IL10RB (ENSMPUG00000001247)	ENSMPUG00000001257	IFNAR1 (ENSMPUG00000001265) #35
American mink	MODERN SPECIES	26	ENSNVIG00000004556 ##14	ENSNVIG00000004564 #10	ENSNVIG00000004567 #10	ENSNVIG00000004572 #10	ENSNVIG00000004580	KRTAP13-3 (ENSNVIG00000004606)	KRTAP15-1 (ENSNVIG00000004611) #14	ENSNVIG00000004622	KRTAP19-8 (ENSNVIG00000004624)	KRTAP6-2 (ENSNVIG00000004627)	KRTAP22-1 (ENSNVIG00000004629)	KRTAP8-1 (ENSNVIG00000004680)	KRTAP7-1 (ENSNVIG00000004686)	KRTAP11-1 (ENSNVIG00000004690) #15	TIAM1 (ENSNVIG00000004722) #18	SOD1 (ENSNVIG00000004846) #22	SCAF4 (ENSNVIG00000004859) #23	HUNK (ENSNVIG00000004944) #24	MIS18A (ENSNVIG00000004969) #25	ENSNVIG00000004983	URB1 (ENSNVIG00000005011) #27	EVA1C (ENSNVIG00000005072) #28	CFAP298 (ENSNVIG00000005117) #29	SYNJ1 (ENSNVIG00000005184) #30	ENSNVIG00000005730	CU062 (ENSNVIG00000005749) #32	OLIG2 (ENSNVIG00000005756) #33	OLIG1 (ENSNVIG00000005770)	ENSNVIG00000005773 #34	IL10RB (ENSNVIG00000005779)	IFNAR1 (ENSNVIG00000005801) #35
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000155551.g #22
Giant Panda	DUPLICATION
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1457																ENSAMEG00000026021 #22
Giant Panda	MODERN SPECIES	1349																ENSAMEG00000028335 #22
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1410																ENSAMEG00000026414 #22
Giant Panda	MODERN SPECIES	1361																ENSAMEG00000028805 #22
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111539 #9	ENSGT00940000162756.a #10	ENSGT00940000162109.B.k ##14	ENSGT00940000162109.A #14	ENSGT00940000161951	ENSGT00860000134312	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.h #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00390000017515.o.b.w.a	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Ursus	ANCESTRAL SPECIES	49	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111539 #9	ENSGT00940000162109.B.l ##14	ENSGT00940000162109.B.k ##14	ENSGT00940000161951	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.h #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00390000017515.o.b.w.a	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36	ENSGT00940000155131 #37	ENSGT00940000154065.b
American black bear	MODERN SPECIES	618																SOD1 (ENSUAMG00000008857) #22	SCAF4 (ENSUAMG00000008860) #23
Polar bear	MODERN SPECIES	240	GRIK1 (ENSUMAG00000016210)	CLDN17 (ENSUMAG00000016609)	CLDN8 (ENSUMAG00000016629)	KRTAP24-1 (ENSUMAG00000016632)	KRTAP27-1 (ENSUMAG00000016634) #9	ENSUMAG00000016635 ##14	ENSUMAG00000016640 ##14	ENSUMAG00000016642	KRTAP13-3 (ENSUMAG00000016652)	ENSUMAG00000016676	ENSUMAG00000016679	KRTAP8-1 (ENSUMAG00000016681)	KRTAP7-1 (ENSUMAG00000016682)	KRTAP11-1 (ENSUMAG00000016684) #15	TIAM1 (ENSUMAG00000016732) #18	SOD1 (ENSUMAG00000016919) #22	SCAF4 (ENSUMAG00000016962) #23	HUNK (ENSUMAG00000017146) #24	URB1 (ENSUMAG00000017419) #27	ENSUMAG00000018120	ENSUMAG00000018111	CFAP298 (ENSUMAG00000018123) #29	SYNJ1 (ENSUMAG00000018419) #30	PAXBP1 (ENSUMAG00000019940) #31	C21orf62 (ENSUMAG00000019962) #32	ENSUMAG00000019963	ENSUMAG00000019970 #34	IFNAR1 (ENSUMAG00000019981) #35	IFNGR2 (ENSUMAG00000020018) #36	TMEM50B (ENSUMAG00000020031) #37	DNAJC28 (ENSUMAG00000020035)
Giant Panda	MODERN SPECIES		ENSAMEG00000027821 ##14	ENSAMEG00000004078 #14	ENSAMEG00000018854	ENSAMEG00000026073	ENSAMEG00000030787	KRTAP19-1 (ENSAMEG00000026296)	KRTAP19-6 (ENSAMEG00000024402)	KRTAP6-3 (ENSAMEG00000029859)	ENSAMEG00000028750	ENSAMEG00000027423	ENSAMEG00000027714	KRTAP8-1 (ENSAMEG00000018803)	KRTAP7-1 (ENSAMEG00000018806)	KRTAP11-1 (ENSAMEG00000018808) #15	TIAM1 (ENSAMEG00000007716) #18	SOD1 (ENSAMEG00000015011) #22	SCAF4 (ENSAMEG00000014987) #23	HUNK (ENSAMEG00000024206) #24	ENSAMEG00000011984 #25	ENSAMEG00000011993	URB1 (ENSAMEG00000011998) #27	EVA1C (ENSAMEG00000015088) #28	CFAP298 (ENSAMEG00000015081) #29	SYNJ1 (ENSAMEG00000015028) #30	PAXBP1 (ENSAMEG00000015020) #31	C21orf62 (ENSAMEG00000019520) #32	ENSAMEG00000026010	OLIG2 (ENSAMEG00000029480) #33	IFNAR2 (ENSAMEG00000015000) #34	IL10RB (ENSAMEG00000014984)	IFNAR1 (ENSAMEG00000014939) #35
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Equus	ANCESTRAL SPECIES	42	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00550000076318	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000161951.`b.b	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00950000182767.b.b.c.a.a.a.d	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Donkey	MODERN SPECIES	9	ENSEASG00005032523	KRTAP13-3 (ENSEASG00005026067)	ENSEASG00005037459 #14	ENSEASG00005033849	ENSEASG00005007787	ENSEASG00005032879	KRTAP20-1 (ENSEASG00005024919)	KRTAP21-2 (ENSEASG00005025529)	ENSEASG00005007780	ENSEASG00005007782	ENSEASG00005030342	KRTAP8-1 (ENSEASG00005033925)	KRTAP7-1 (ENSEASG00005007775)	KRTAP11-1 (ENSEASG00005023745) #15	TIAM1 (ENSEASG00005007767) #18	SOD1 (ENSEASG00005007764) #22	SCAF4 (ENSEASG00005007756) #23	ENSEASG00005034048	HUNK (ENSEASG00005007746) #24	MIS18A (ENSEASG00005007739) #25	ENSEASG00005007737 #26	URB1 (ENSEASG00005007711) #27	EVA1C (ENSEASG00005007691) #28	CFAP298 (ENSEASG00005007688) #29	SYNJ1 (ENSEASG00005006287) #30	PAXBP1 (ENSEASG00005006214) #31	C21orf62 (ENSEASG00005006212) #32	OLIG2 (ENSEASG00005029582) #33	OLIG1 (ENSEASG00005027170)	IFNAR2 (ENSEASG00005006208) #34	IL10RB (ENSEASG00005006207)
Horse	MODERN SPECIES	18	CLDN8 (ENSECAG00000020713)	KRTAP24-1 (ENSECAG00000001540)	KRTAP25-1 (ENSECAG00000037829)	ENSECAG00000057209 #7	KRTAP27-1 (ENSECAG00000002951) #9	ENSECAG00000035079	ENSECAG00000048774 #10	ENSECAG00000044231	ENSECAG00000048751 #10	ENSECAG00000060113	ENSECAG00000058212	KRTAP7-1 (ENSECAG00000029039)	ENSECAG00000049688	KRTAP19-8 (ENSECAG00000042559)	TIAM1 (ENSECAG00000032992) #18	SOD1 (ENSECAG00000008958) #22	SCAF4 (ENSECAG00000014248) #23	ENSECAG00000037230	HUNK (ENSECAG00000007153) #24	MIS18A (ENSECAG00000010326) #25	MRAP (ENSECAG00000012808) #26	URB1 (ENSECAG00000013206) #27	EVA1C (ENSECAG00000018743) #28	CFAP298 (ENSECAG00000019974) #29	SYNJ1 (ENSECAG00000004829) #30	PAXBP1 (ENSECAG00000016552) #31	C26H21orf62 (ENSECAG00000006590) #32	OLIG2 (ENSECAG00000006758) #33	OLIG1 (ENSECAG00000037026)	IFNAR2 (ENSECAG00000003532) #34	IL10RB (ENSECAG00000007359)
Chiroptera	ANCESTRAL SPECIES	35	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT01090000261056	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Megabat	MODERN SPECIES	1008																SOD1 (ENSPVAG00000005216) #22	SCAF4 (ENSPVAG00000005220) #23	HUNK (ENSPVAG00000005225) #24
Microchiroptera	ANCESTRAL SPECIES	37	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111539 #9	ENSGT01090000261056	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010010188 #10	ENSRFEG00010010203	ENSRFEG00010010218 ##14	ENSRFEG00010010228	KRTAP15-1 (ENSRFEG00010010257) #14	ENSRFEG00010010288	KRTAP19-7 (ENSRFEG00010010349)	KRTAP20-2 (ENSRFEG00010010454)	ENSRFEG00010010564	KRTAP8-1 (ENSRFEG00010010583)	KRTAP7-1 (ENSRFEG00010010607)	KRTAP11-1 (ENSRFEG00010010626) #15	TIAM1 (ENSRFEG00010010676) #18	ENSRFEG00010010890	ENSRFEG00010010943	SOD1 (ENSRFEG00010000148) #22	SCAF4 (ENSRFEG00010000163) #23	HUNK (ENSRFEG00010000178) #24	MIS18A (ENSRFEG00010000185) #25	MRAP (ENSRFEG00010000197) #26	URB1 (ENSRFEG00010000219) #27	EVA1C (ENSRFEG00010000295) #28	CFAP298 (ENSRFEG00010000347) #29	SYNJ1 (ENSRFEG00010000545) #30	PAXBP1 (ENSRFEG00010000808) #31	C21orf62 (ENSRFEG00010000839) #32	OLIG2 (ENSRFEG00010000847) #33	ENSRFEG00010000890	IFNAR2 (ENSRFEG00010000912) #34	IL10RB (ENSRFEG00010000947)	IFNAR1 (ENSRFEG00010000975) #35
Microbat	MODERN SPECIES	2122																ENSMLUG00000011448 #22	SCAF4 (ENSMLUG00000011472) #23
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00860000134598	ENSGT00840000130947	ENSGT01090000260341	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Suina	ANCESTRAL SPECIES	35	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000161951	ENSGT00940000162109.B ##14	ENSGT00950000183472	ENSGT00950000184153	ENSGT00950000183416	ENSGT00860000134312	ENSGT00840000130947	ENSGT01090000260341	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Chacoan peccary	MODERN SPECIES	99											ENSCWAG00000001923	KRTAP8-1 (ENSCWAG00000001930)	KRTAP7-1 (ENSCWAG00000001936)	KRTAP11-1 (ENSCWAG00000001941) #15	TIAM1 (ENSCWAG00000002003) #18	SOD1 (ENSCWAG00000002231) #22	SCAF4 (ENSCWAG00000002250) #23	HUNK (ENSCWAG00000002287) #24	MIS18A (ENSCWAG00000002302) #25	URB1 (ENSCWAG00000002335) #27	EVA1C (ENSCWAG00000002359) #28	CFAP298 (ENSCWAG00000002416) #29	SYNJ1 (ENSCWAG00000002494) #30	PAXBP1 (ENSCWAG00000002660) #31	C21orf62 (ENSCWAG00000002668) #32	OLIG2 (ENSCWAG00000002675) #33	OLIG1 (ENSCWAG00000002678)	ENSCWAG00000002682	IFNAR2 (ENSCWAG00000002693) #34	IL10RB (ENSCWAG00000002705)	IFNAR1 (ENSCWAG00000002719) #35
Pig	MODERN SPECIES	4	ENSSSCG00000053856	ENSSSCG00000061363	KRTAP6-2 (ENSSSCG00000048455)	KRTAP22-1 (ENSSSCG00000057039)	ENSSSCG00000055559	KRTAP20-2 (ENSSSCG00000055516)	ENSSSCG00000056492	ENSSSCG00000060337	ENSSSCG00000055224	KRTAP21-1 (ENSSSCG00000056687)	ENSSSCG00000039409	KRTAP8-1 (ENSSSCG00000056362)	KRTAP7-1 (ENSSSCG00000062373)	KRTAP11-1 (ENSSSCG00000038131) #15	TIAM1 (ENSSSCG00000012034) #18	SOD1 (ENSSSCG00000021355) #22	SCAF4 (ENSSSCG00000021023) #23	HUNK (ENSSSCG00000029392) #24	MIS18A (ENSSSCG00000034229) #25	ENSSSCG00000040843 #26	URB1 (ENSSSCG00000032024) #27	EVA1C (ENSSSCG00000021598) #28	CFAP298 (ENSSSCG00000040827) #29	SYNJ1 (ENSSSCG00000012035) #30	PAXBP1 (ENSSSCG00000012037) #31	C21orf62 (ENSSSCG00000012038) #32	OLIG2 (ENSSSCG00000012039) #33	OLIG1 (ENSSSCG00000012040)	ENSSSCG00000036556 #34	ENSSSCG00000041300	IL10RB (ENSSSCG00000041289)
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00860000134598	ENSGT01090000260341	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Camelidae	DUPLICATION
Camelidae	ANCESTRAL SPECIES		ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000162756 #10	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00950000184314	ENSGT01070000255210	ENSGT01040000243079	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551.i #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Alpaca	MODERN SPECIES	829																SOD1 (ENSVPAG00000012396) #22	SCAF4 (ENSVPAG00000012397) #23	ENSVPAG00000012399 #24
Arabian camel	MODERN SPECIES		ENSCDRG00005001565 #7	KRTAP13-4 (ENSCDRG00005001578) #10	ENSCDRG00005001587	ENSCDRG00005001596 #14	KRTAP13-3 (ENSCDRG00005001610)	KRTAP19-5 (ENSCDRG00005001625)	ENSCDRG00005001636	ENSCDRG00005001641	ENSCDRG00005001653	KRTAP20-1 (ENSCDRG00005001658)	ENSCDRG00005001663	KRTAP8-1 (ENSCDRG00005001679)	KRTAP7-1 (ENSCDRG00005001686)	KRTAP11-1 (ENSCDRG00005001688) #15	TIAM1 (ENSCDRG00005001724) #18	SOD1 (ENSCDRG00005001811) #22	SCAF4 (ENSCDRG00005001828) #23	HUNK (ENSCDRG00005001856) #24	MIS18A (ENSCDRG00005001867) #25	URB1 (ENSCDRG00005001883) #27	EVA1C (ENSCDRG00005001957) #28	CFAP298 (ENSCDRG00005002011) #29	SYNJ1 (ENSCDRG00005002057) #30	ENSCDRG00005002369	PAXBP1 (ENSCDRG00005002383) #31	C21orf62 (ENSCDRG00005002400) #32	OLIG2 (ENSCDRG00005002406) #33	OLIG1 (ENSCDRG00005002416)	IFNAR2 (ENSCDRG00005002424) #34	IL10RB (ENSCDRG00005002438)	IFNAR1 (ENSCDRG00005002453) #35
Camelidae	ANCESTRAL SPECIES																	ENSGT00940000155551.j #22
Arabian camel	MODERN SPECIES	4	LRRIQ3 (ENSCDRG00005009954)	TNNI3K (ENSCDRG00005010113)	LRRC53 (ENSCDRG00005010584)	ENSCDRG00005010684	ENSCDRG00005010774	TYW3 (ENSCDRG00005010900)	LHX8 (ENSCDRG00005011024)	SLC44A5 (ENSCDRG00005011212)	ACADM (ENSCDRG00005011717)	RABGGTB (ENSCDRG00005012036)	MSH4 (ENSCDRG00005012261)	ASB17 (ENSCDRG00005012510)	ST6GALNAC3 (ENSCDRG00005012552)	ST6GALNAC5 (ENSCDRG00005012633)	PIGK (ENSCDRG00005012684)	ENSCDRG00005012829 #22	AK5 (ENSCDRG00005012861)	ZZZ3 (ENSCDRG00005013030)	USP33 (ENSCDRG00005013230)	MIGA1 (ENSCDRG00005013485)	NEXN (ENSCDRG00005013657)	ENSCDRG00005013957	DNAJB4 (ENSCDRG00005014458)	GIPC2 (ENSCDRG00005014503)	PTGFR (ENSCDRG00005014602)	IFI44L (ENSCDRG00005014623)	IFI44 (ENSCDRG00005014665)	ADGRL4 (ENSCDRG00005014755)	ADGRL2 (ENSCDRG00005015074)	ENSCDRG00005015601	ENSCDRG00005006665
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00860000134598	ENSGT01090000260341	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Cetacea	ANCESTRAL SPECIES	10	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00860000134598	ENSGT00950000184153	ENSGT00950000183791	ENSGT01090000260341	ENSGT00960000187414	ENSGT00530000064274	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00730000111511 #7	ENSGT00940000162109.C ##14	ENSGT00950000184153	ENSGT00950000183791	ENSGT01090000260341	ENSGT00960000187414	ENSGT01000000221969	ENSGT00530000064274	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00730000111511 #7	ENSGT00940000162109.C ##14	ENSGT00950000184153	ENSGT00950000183791	ENSGT00940000162756 #10	ENSGT00940000162109.B.c ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT01050000245033	ENSGT00960000187414	ENSGT01000000221969	ENSGT00530000064274	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00730000111511 #7	ENSGT00950000184153	ENSGT00950000183791	ENSGT01050000245033	ENSGT00960000187414	ENSGT01000000221969	ENSGT00530000064274	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00950000184153	ENSGT00950000183791	ENSGT00960000187414	ENSGT00530000064274	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00910000147901	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Beluga whale	MODERN SPECIES	111	ENSDLEG00000021186 #7	ENSDLEG00000021185 ##14	ENSDLEG00000021184	ENSDLEG00000021180 #14	ENSDLEG00000021178 #10	ENSDLEG00000021175 ##14	ENSDLEG00000021172	KRTAP15-1 (ENSDLEG00000021170) #14	ENSDLEG00000021167	KRTAP19-7 (ENSDLEG00000021166)	ENSDLEG00000021164	ENSDLEG00000021162	KRTAP11-1 (ENSDLEG00000021160) #15	ENSDLEG00000021157 #18	ENSDLEG00000021155 #18	SOD1 (ENSDLEG00000021153) #22	SCAF4 (ENSDLEG00000021147) #23	HUNK (ENSDLEG00000021142) #24	MIS18A (ENSDLEG00000021139) #25	MRAP (ENSDLEG00000021138) #26	URB1 (ENSDLEG00000021132) #27	EVA1C (ENSDLEG00000021118) #28	CFAP298 (ENSDLEG00000021112) #29	SYNJ1 (ENSDLEG00000020920) #30	ENSDLEG00000020825	PAXBP1 (ENSDLEG00000020795) #31	C21orf62 (ENSDLEG00000020786) #32	OLIG2 (ENSDLEG00000020781) #33	OLIG1 (ENSDLEG00000020779)	IFNAR2 (ENSDLEG00000020773) #34	IL10RB (ENSDLEG00000020769)
Narwhal	MODERN SPECIES	297	CLDN17 (ENSMMNG00015002607)	CLDN8 (ENSMMNG00015002596)	ENSMMNG00015002573 #10	ENSMMNG00015002541 #14	KRTAP13-3 (ENSMMNG00015002529)	ENSMMNG00015002506 ##14	KRTAP15-1 (ENSMMNG00015002483) #14	KRTAP19-2 (ENSMMNG00015002468)	ENSMMNG00015002431	KRTAP19-6 (ENSMMNG00015002423)	KRTAP19-7 (ENSMMNG00015002415)	ENSMMNG00015002351	KRTAP8-1 (ENSMMNG00015002342)	KRTAP11-1 (ENSMMNG00015002324) #15	TIAM1 (ENSMMNG00015002221) #18	SOD1 (ENSMMNG00015002159) #22	SCAF4 (ENSMMNG00015002112) #23	HUNK (ENSMMNG00015002072) #24	MIS18A (ENSMMNG00015002043) #25	ENSMMNG00015002016 #26	URB1 (ENSMMNG00015001941) #27	ENSMMNG00015001856	CFAP298 (ENSMMNG00015001805) #29	SYNJ1 (ENSMMNG00015001641) #30	ENSMMNG00015001498	PAXBP1 (ENSMMNG00015001466) #31	C21orf62 (ENSMMNG00015001444) #32	OLIG2 (ENSMMNG00015001431) #33	OLIG1 (ENSMMNG00015001419)	IFNAR2 (ENSMMNG00015001396) #34	IL10RB (ENSMMNG00015001357)
Vaquita	MODERN SPECIES	15	ENSPSNG00000017921 #7	ENSPSNG00000017975	ENSPSNG00000017997 ##14	ENSPSNG00000018158	KRTAP15-1 (ENSPSNG00000018174) #14	KRTAP19-2 (ENSPSNG00000018192)	ENSPSNG00000018295	KRTAP19-6 (ENSPSNG00000018325)	KRTAP19-7 (ENSPSNG00000018343)	ENSPSNG00000018356	ENSPSNG00000018375	ENSPSNG00000018395	KRTAP8-1 (ENSPSNG00000018427)	TIAM1 (ENSPSNG00000018566) #18	ENSPSNG00000019049	SOD1 (ENSPSNG00000019088) #22	SCAF4 (ENSPSNG00000019142) #23	HUNK (ENSPSNG00000000164) #24	MIS18A (ENSPSNG00000000189) #25	MRAP (ENSPSNG00000000204) #26	URB1 (ENSPSNG00000000249) #27	ENSPSNG00000000372	CFAP298 (ENSPSNG00000000434) #29	SYNJ1 (ENSPSNG00000000790) #30	PAXBP1 (ENSPSNG00000001317) #31	C21orf62 (ENSPSNG00000001342) #32	OLIG2 (ENSPSNG00000001353) #33	OLIG1 (ENSPSNG00000001364)	IFNAR2 (ENSPSNG00000001381) #34	IL10RB (ENSPSNG00000001403)	IFNAR1 (ENSPSNG00000001435) #35
Dolphin	MODERN SPECIES	4657																SOD1 (ENSTTRG00000010955) #22	SCAF4 (ENSTTRG00000010963) #23
Sperm whale	MODERN SPECIES	19	ENSPCTG00005002325	ENSPCTG00005002334 ##14	KRTAP15-1 (ENSPCTG00005002379) #14	KRTAP19-2 (ENSPCTG00005002385)	KRTAP19-5 (ENSPCTG00005002391)	ENSPCTG00005002396	KRTAP19-6 (ENSPCTG00005002408)	KRTAP19-7 (ENSPCTG00005002417)	KRTAP21-1 (ENSPCTG00005002461)	ENSPCTG00005002470	ENSPCTG00005002481	KRTAP8-1 (ENSPCTG00005002493)	TIAM1 (ENSPCTG00005002554) #18	ENSPCTG00005002633	ENSPCTG00005002649	SOD1 (ENSPCTG00005002658) #22	SCAF4 (ENSPCTG00005002739) #23	HUNK (ENSPCTG00005002812) #24	MIS18A (ENSPCTG00005002827) #25	ENSPCTG00005002863 #27	EVA1C (ENSPCTG00005002920) #28	CFAP298 (ENSPCTG00005002934) #29	SYNJ1 (ENSPCTG00005003044) #30	PAXBP1 (ENSPCTG00005003338) #31	C8H21orf62 (ENSPCTG00005003354) #32	OLIG2 (ENSPCTG00005003364) #33	OLIG1 (ENSPCTG00005003370)	ENSPCTG00005003381	IFNAR2 (ENSPCTG00005003398) #34	IFNAR1 (ENSPCTG00005003415) #35	IFNGR2 (ENSPCTG00005003435) #36
Blue whale	MODERN SPECIES	15	MAP3K7CL (ENSBMSG00010017729)	BACH1 (ENSBMSG00010017764)	GRIK1 (ENSBMSG00010017919)	CLDN17 (ENSBMSG00010020351)	CLDN8 (ENSBMSG00010020367)	ENSBMSG00010020394	ENSBMSG00010020441	KRTAP13-3 (ENSBMSG00010020452)	KRTAP15-1 (ENSBMSG00010020460) #14	KRTAP19-2 (ENSBMSG00010020469)	KRTAP19-6 (ENSBMSG00010020494)	KRTAP19-7 (ENSBMSG00010020502)	KRTAP11-1 (ENSBMSG00010020529) #15	TIAM1 (ENSBMSG00010020586) #18	ENSBMSG00010020769	SOD1 (ENSBMSG00010020783) #22	ENSBMSG00010020802 #23	HUNK (ENSBMSG00010020829) #24	MIS18A (ENSBMSG00010020839) #25	URB1 (ENSBMSG00010020887) #27	EVA1C (ENSBMSG00010020963) #28	CFAP298 (ENSBMSG00010021022) #29	SYNJ1 (ENSBMSG00010021085) #30	ENSBMSG00010021224	PAXBP1 (ENSBMSG00010021243) #31	C21orf62 (ENSBMSG00010021249) #32	ENSBMSG00010021257	OLIG2 (ENSBMSG00010021265) #33	OLIG1 (ENSBMSG00010021270)	IFNAR2 (ENSBMSG00010021336) #34	IL10RB (ENSBMSG00010021390)
Pecora	ANCESTRAL SPECIES	8	ENSGT00940000159077	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT01090000260513	ENSGT01050000245033	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Yarkand deer	MODERN SPECIES	24	ENSCHYG00000025280	ENSCHYG00000025271	ENSCHYG00000025265	ENSCHYG00000025259	ENSCHYG00000025252	ENSCHYG00000025231	ENSCHYG00000025209	ENSCHYG00000025195	ENSCHYG00000025192	ENSCHYG00000025185	ENSCHYG00000025179	KRTAP7-1 (ENSCHYG00000025177)	KRTAP11-1 (ENSCHYG00000025146) #15	ENSCHYG00000025126	TIAM1 (ENSCHYG00000024768) #18	SOD1 (ENSCHYG00000024646) #22	SCAF4 (ENSCHYG00000024539) #23	HUNK (ENSCHYG00000024395) #24	MIS18A (ENSCHYG00000024347) #25	ENSCHYG00000024336 #26	URB1 (ENSCHYG00000024118) #27	ENSCHYG00000023975	SYNJ1 (ENSCHYG00000022521) #30	PAXBP1 (ENSCHYG00000022328) #31	C21orf62 (ENSCHYG00000022299) #32	OLIG2 (ENSCHYG00000022271) #33	OLIG1 (ENSCHYG00000022248)	IFNAR2 (ENSCHYG00000022081) #34	IL10RB (ENSCHYG00000022003)	IFNAR1 (ENSCHYG00000021948) #35	IFNGR2 (ENSCHYG00000021916) #36
Percora_a	ANCESTRAL SPECIES	7	ENSGT00940000162756 #10	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000183791	ENSGT01050000245033.c.b.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Siberian musk deer	MODERN SPECIES	1262																ENSMMSG00000022653 #22	SCAF4 (ENSMMSG00000022612) #23	HUNK (ENSMMSG00000022584) #24	MIS18A (ENSMMSG00000022567) #25	ENSMMSG00000022559 #26	URB1 (ENSMMSG00000022537) #27	EVA1C (ENSMMSG00000022510) #28	ENSMMSG00000022487 #29	SYNJ1 (ENSMMSG00000022241) #30	PAXBP1 (ENSMMSG00000022130) #31	C21orf62 (ENSMMSG00000022112) #32	OLIG2 (ENSMMSG00000022105) #33	OLIG1 (ENSMMSG00000022099)
Bovidae	ANCESTRAL SPECIES	9	ENSGT00950000183791	ENSGT00940000165160	ENSGT00950000183472	ENSGT00860000134229	ENSGT00940000162109.A #14	ENSGT00940000162756 #10	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f ##14	ENSGT00940000161951	ENSGT01050000245033.c.b.b.d	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00510000049322 #34	ENSGT00940000158231
Bovinae	ANCESTRAL SPECIES	6	ENSGT00860000134229	ENSGT00910000148394	ENSGT00940000162109.A #14	ENSGT00940000162756 #10	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f ##14	ENSGT00940000161951	ENSGT00950000186330	ENSGT00950000186363.a	ENSGT01050000245033.c.b.b.d.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00510000049322 #34	ENSGT00940000158231
Bos	ANCESTRAL SPECIES	7	ENSGT00910000148394	ENSGT00940000162109.A #14	ENSGT00940000162756 #10	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f ##14	ENSGT00940000161951	ENSGT00950000186330	ENSGT00950000186363.a	ENSGT01050000245033.c.b.a.a.d	ENSGT01050000245033.c.b.a.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00990000203553.c.b.o.a	ENSGT00510000049322 #34
Bos_b	DUPLICATION
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000161951	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000186363.b	ENSGT00950000186330	ENSGT01050000245033.c.b.b.d.b	ENSGT01050000245033.c.b.a.a.d	ENSGT01050000245033.c.b.a.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294.m #18	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000156294.n #18	ENSGT00940000155551.k #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499.c #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00990000203553.c.b.o.a	ENSGT00510000049322 #34
Cow	MODERN SPECIES		ENSBTAG00000052321	ENSBTAG00000051544	ENSBTAG00000052530	ENSBTAG00000044154	ENSBTAG00000052340	ENSBTAG00000049468	ENSBTAG00000049506	ENSBTAG00000054173	ENSBTAG00000050662	ENSBTAG00000048503	KRTAP8-1 (ENSBTAG00000015812)	KRTAP7-1 (ENSBTAG00000046804)	KRTAP11-1 (ENSBTAG00000034869) #15	ENSBTAG00000048631 #18	TIAM1 (ENSBTAG00000017839) #18	SOD1 (ENSBTAG00000018854) #22	SCAF4 (ENSBTAG00000018855) #23	HUNK (ENSBTAG00000020762) #24	MIS18A (ENSBTAG00000016619) #25	MRAP (ENSBTAG00000023718) #26	URB1 (ENSBTAG00000012412) #27	EVA1C (ENSBTAG00000017310) #28	CFAP298 (ENSBTAG00000003059) #29	SYNJ1 (ENSBTAG00000003063) #30	PAXBP1 (ENSBTAG00000003064) #31	C1H21orf62 (ENSBTAG00000043993) #32	OLIG2 (ENSBTAG00000049136) #33	OLIG1 (ENSBTAG00000037547)	ENSBTAG00000051548	ENSBTAG00000051429	IFNAR2 (ENSBTAG00000015212) #34
Hybrid Bos Indicus	MODERN SPECIES		KRTAP6-2 (ENSBIXG00005028686)	ENSBIXG00005002364	ENSBIXG00005028714	ENSBIXG00005028719	ENSBIXG00005028727	ENSBIXG00005004972	ENSBIXG00005028766	ENSBIXG00005004980	ENSBIXG00005028792	ENSBIXG00005004989	KRTAP8-1 (ENSBIXG00005028809)	KRTAP7-1 (ENSBIXG00005002328)	KRTAP11-1 (ENSBIXG00005004999) #15	ENSBIXG00005028842	TIAM1 (ENSBIXG00005002204) #18	ENSBIXG00005028977 #22	SCAF4 (ENSBIXG00005005115) #23	HUNK (ENSBIXG00005001939) #24	MIS18A (ENSBIXG00005001911) #25	URB1 (ENSBIXG00005029122) #27	EVA1C (ENSBIXG00005005199) #28	SYNJ1 (ENSBIXG00005001562) #30	PAXBP1 (ENSBIXG00005001540) #31	ENSBIXG00005005281 #32	OLIG2 (ENSBIXG00005001524) #33	OLIG1 (ENSBIXG00005001523)	ENSBIXG00005001521	ENSBIXG00005029244	IFNAR2 (ENSBIXG00005005287) #34	IL10RB (ENSBIXG00005001518)	IFNAR1 (ENSBIXG00005029248) #35
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000155551.l #22
Cow	MODERN SPECIES	4	HAO1 (ENSBTAG00000019811)	ADRA1D (ENSBTAG00000019504)	SMOX (ENSBTAG00000001112)	RNF24 (ENSBTAG00000007922)	ENSBTAG00000050318	PANK2 (ENSBTAG00000007920)	ENSBTAG00000053268	MAVS (ENSBTAG00000013545)	ENSBTAG00000054341	AP5S1 (ENSBTAG00000008439)	CDC25B (ENSBTAG00000008436)	CENPB (ENSBTAG00000045784)	SPEF1 (ENSBTAG00000006578)	ADISSP (ENSBTAG00000018735)	HSPA12B (ENSBTAG00000018732)	ENSBTAG00000027412 #22	SIGLEC1 (ENSBTAG00000013167)	ADAM33 (ENSBTAG00000013163)	GFRA4 (ENSBTAG00000013160)	ATRN (ENSBTAG00000003848)	DNAAF9 (ENSBTAG00000003494)	SLC4A11 (ENSBTAG00000027409)	ITPA (ENSBTAG00000013776)	DDRGK1 (ENSBTAG00000013753)	LZTS3 (ENSBTAG00000020454)	UBOX5 (ENSBTAG00000015379)	FASTKD5 (ENSBTAG00000051021)	AVP (ENSBTAG00000008027)	OXT (ENSBTAG00000008026)	MRPS26 (ENSBTAG00000000825)	GNRH2 (ENSBTAG00000049511)
Bos_a	ANCESTRAL SPECIES	59	ENSGT00730000111080.b.f	ENSGT00860000134229	ENSGT00950000183472	ENSGT00940000165160	ENSGT00950000186363.b	ENSGT00950000186330	ENSGT00950000186363.a	ENSGT01050000245033.c.b.a.a.d	ENSGT01050000245033.c.b.a.b	ENSGT00960000187414	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.a.a.b.a	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00990000203553.c.b.o.a	ENSGT00510000049322 #34
Domestic yak	MODERN SPECIES		KRTAP19-5 (ENSBGRG00000000097)	ENSBGRG00000000099	ENSBGRG00000000100	ENSBGRG00000000101	ENSBGRG00000000103	ENSBGRG00000000105	ENSBGRG00000000106	ENSBGRG00000000107	ENSBGRG00000000108	KRTAP8-1 (ENSBGRG00000000109)	KRTAP7-1 (ENSBGRG00000000110)	KAP11.1 (ENSBGRG00000000111) #15	TIAM1 (ENSBGRG00000000112) #18	ENSBGRG00000000114	ENSBGRG00000000116	SOD1 (ENSBGRG00000000117) #22	SCAF4 (ENSBGRG00000000118) #23	HUNK (ENSBGRG00000000119) #24	MIS18A (ENSBGRG00000000120) #25	ENSBGRG00000000121 #26	URB1 (ENSBGRG00000000122) #27	EVA1C (ENSBGRG00000000123) #28	CFAP298 (ENSBGRG00000000124) #29	SYNJ1 (ENSBGRG00000000125) #30	PAXBP1 (ENSBGRG00000000127) #31	C21orf62 (ENSBGRG00000000128) #32	OLIG1 (ENSBGRG00000000129)	ENSBGRG00000000130	IFNAR2 (ENSBGRG00000000131) #34	IL10RB (ENSBGRG00000000132)	IFNAR1 (ENSBGRG00000000133) #35
Wild yak	MODERN SPECIES	556																SOD1 (ENSBMUG00000007290) #22	SCAF4 (ENSBMUG00000007449) #23	HUNK (ENSBMUG00000007769) #24	MIS18A (ENSBMUG00000007776) #25	ENSBMUG00000007787	URB1 (ENSBMUG00000007809) #27	EVA1C (ENSBMUG00000007846) #28	CFAP298 (ENSBMUG00000007881) #29	SYNJ1 (ENSBMUG00000008123) #30	PAXBP1 (ENSBMUG00000008350) #31	C21orf62 (ENSBMUG00000008364) #32	OLIG2 (ENSBMUG00000008374) #33	ENSBMUG00000008393	ENSBMUG00000008399	IFNAR2 (ENSBMUG00000008422) #34	IL10RB (ENSBMUG00000008447)
American bison	MODERN SPECIES	3339			ENSBBBG00000016296	SYT4 (ENSBBBG00000016325)	ENSBBBG00000016335	ENSBBBG00000016374	SERPINB8 (ENSBBBG00000004067)	CDH7 (ENSBBBG00000016500)	CDH19 (ENSBBBG00000016564)	DSEL (ENSBBBG00000000763)	ENSBBBG00000000749	ENSBBBG00000006848	TMX3 (ENSBBBG00000004107)	CCDC102B (ENSBBBG00000004123)	TIAM1 (ENSBBBG00000007661) #18	SOD1 (ENSBBBG00000016855) #22	SCAF4 (ENSBBBG00000017043) #23	HUNK (ENSBBBG00000008926) #24	MIS18A (ENSBBBG00000017118) #25	ENSBBBG00000017133 #26	URB1 (ENSBBBG00000004256) #27	EVA1C (ENSBBBG00000017293) #28	CFAP298 (ENSBBBG00000017374) #29	SYNJ1 (ENSBBBG00000007094) #30	PAXBP1 (ENSBBBG00000017659) #31	C21orf62 (ENSBBBG00000017668) #32	OLIG2 (ENSBBBG00000017676) #33	ENSBBBG00000004373	ENSBBBG00000017687 #34	IL10RB (ENSBBBG00000017701)	IFNAR1 (ENSBBBG00000017713) #35
Caprinae	ANCESTRAL SPECIES	42	ENSGT00940000162109.B.e ##14	ENSGT00940000162109.B.f.a ##14	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT00860000134229	ENSGT01090000262067	ENSGT01060000251167	ENSGT01010000228926	ENSGT01100000266115	ENSGT00990000212981.B	ENSGT00990000212981.A	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00390000017491.t.u.t	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Goat	MODERN SPECIES		ENSCHIG00000025484	ENSCHIG00000005099	ENSCHIG00000010406	ENSCHIG00000015280	ENSCHIG00000009865	ENSCHIG00000016437	ENSCHIG00000010356	ENSCHIG00000009372	ENSCHIG00000011204	ENSCHIG00000002864	ENSCHIG00000012716	KRTAP7-1 (ENSCHIG00000008395)	KRTAP11-1 (ENSCHIG00000002902) #15	ENSCHIG00000014054	TIAM1 (ENSCHIG00000017920) #18	SOD1 (ENSCHIG00000014496) #22	SCAF4 (ENSCHIG00000008385) #23	HUNK (ENSCHIG00000014504) #24	MIS18A (ENSCHIG00000008710) #25	URB1 (ENSCHIG00000015645) #27	EVA1C (ENSCHIG00000017088) #28	CFAP298 (ENSCHIG00000026948) #29	SYNJ1 (ENSCHIG00000005095) #30	PAXBP1 (ENSCHIG00000021245) #31	OLIG2 (ENSCHIG00000007434) #33	OLIG1 (ENSCHIG00000020025)	ENSCHIG00000015210	IFNAR2 (ENSCHIG00000019897) #34	IL10RB (ENSCHIG00000019891)	IFNAR1 (ENSCHIG00000018032) #35	IFNGR2 (ENSCHIG00000017662) #36
Rambouillet Sheep	MODERN SPECIES		KRTAP19-6 (ENSOARG00020001557)	KRTAP6-1 (ENSOARG00020001540)	KAP6-L (ENSOARG00020001538)	KAP6-2 (ENSOARG00020001528)	KAP6-2 (ENSOARG00020001520)	KRTAP20-2 (ENSOARG00020001503)	ENSOARG00020001488	ENSOARG00020001483	ENSOARG00020001474	KRTAP21-1 (ENSOARG00020001467)	KRTAP8-2 (ENSOARG00020001458)	KAP8 (ENSOARG00020001446)	KAP7 (ENSOARG00020001442)	KRTAP11-1 (ENSOARG00020001438) #15	TIAM1 (ENSOARG00020001378) #18	SOD1 (ENSOARG00020001337) #22	SCAF4 (ENSOARG00020001317) #23	HUNK (ENSOARG00020001296) #24	ENSOARG00020001277 #25	ENSOARG00020001242 #37	ENSOARG00020001232	CFAP298 (ENSOARG00020001184) #29	SYNJ1 (ENSOARG00020000444) #30	PAXBP1 (ENSOARG00020000179) #31	C21orf62 (ENSOARG00020000147) #32	OLIG2 (ENSOARG00020000104) #33	OLIG1 (ENSOARG00020000100)	IFNAR2 (ENSOARG00020007396) #34	IL10RB (ENSOARG00020007337)	IFNAR1 (ENSOARG00020007172) #35	IFNGR2 (ENSOARG00020006717) #36
Atlantogenata	ANCESTRAL SPECIES	53	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000161951	ENSGT00940000162109.A #14	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Xenarthra	ANCESTRAL SPECIES	94		ENSGT00940000158923	ENSGT00940000156253	ENSGT00390000001157.A.a	ENSGT00730000111511 #7	ENSGT00730000111539 #9	ENSGT00940000161951.gb	ENSGT00940000162756 #10	ENSGT00940000162109.C ##14	ENSGT00940000161951.fb	ENSGT01090000260513	ENSGT00530000064274	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2557	ENSDNOG00000008617 #10	ENSDNOG00000033513 ##14	ENSDNOG00000039923	ENSDNOG00000038940	ENSDNOG00000012983	ENSDNOG00000007184	ENSDNOG00000033998	ENSDNOG00000018697	ENSDNOG00000012039	ENSDNOG00000025182	KRTAP8-1 (ENSDNOG00000004675)	KRTAP7-1 (ENSDNOG00000038495)	KRTAP11-1 (ENSDNOG00000044842) #15	TIAM1 (ENSDNOG00000001110) #18	ENSDNOG00000034184	ENSDNOG00000041575 #22	SCAF4 (ENSDNOG00000019014) #23	HUNK (ENSDNOG00000039018) #24	ENSDNOG00000040477	MIS18A (ENSDNOG00000006027) #25	URB1 (ENSDNOG00000015586) #27	EVA1C (ENSDNOG00000024185) #28	CFAP298 (ENSDNOG00000008197) #29	SYNJ1 (ENSDNOG00000010732) #30	PAXBP1 (ENSDNOG00000012279) #31	C21orf62 (ENSDNOG00000042458) #32
Armadillo	MODERN SPECIES	4216	ENSDNOG00000010048	DDAH1 (ENSDNOG00000035701)	CCN1 (ENSDNOG00000002945)	ZNHIT6 (ENSDNOG00000044251)	COL24A1 (ENSDNOG00000016150)	ENSDNOG00000044659	ODF2L (ENSDNOG00000010680)	CLCA2 (ENSDNOG00000001152)	CLCA1 (ENSDNOG00000001155)	CLCA4 (ENSDNOG00000001159)	ENSDNOG00000040224	SH3GLB1 (ENSDNOG00000039119)	SELENOF (ENSDNOG00000004701)	HS2ST1 (ENSDNOG00000049698)	LMO4 (ENSDNOG00000047628)	ENSDNOG00000006512 #22
Afrotheria	ANCESTRAL SPECIES	57	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111539 #9	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT01000000219199	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Afrotheria_a	ANCESTRAL SPECIES	54	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000162550	ENSGT00940000159077	ENSGT00390000001157.A.a	ENSGT00860000134598	ENSGT00730000111539 #9	ENSGT00390000015202	ENSGT00730000111463 #15	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT00390000014210 #27	ENSGT01000000219199	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Elephant	DUPLICATION
Elephant	MODERN SPECIES	71	BACH1 (ENSLAFG00000029492)	GRIK1 (ENSLAFG00000000106)	CLDN17 (ENSLAFG00000018369)	CLDN8 (ENSLAFG00000029696)	KRTAP24-1 (ENSLAFG00000018033)	ENSLAFG00000029969	KRTAP27-1 (ENSLAFG00000014177) #9	ENSLAFG00000023209	ENSLAFG00000000979	ENSLAFG00000000976	ENSLAFG00000010373	ENSLAFG00000014806	KRTAP7-1 (ENSLAFG00000031172)	KRTAP11-1 (ENSLAFG00000000676) #15	TIAM1 (ENSLAFG00000000418) #18	ENSLAFG00000010708 #22	SCAF4 (ENSLAFG00000010710) #23	HUNK (ENSLAFG00000004577) #24	MIS18A (ENSLAFG00000013701) #25	MRAP (ENSLAFG00000010405) #26	URB1 (ENSLAFG00000010407) #27	ENSLAFG00000010309	CFAP298 (ENSLAFG00000011803) #29	SYNJ1 (ENSLAFG00000011806) #30	PAXBP1 (ENSLAFG00000012769) #31	C21orf62 (ENSLAFG00000030642) #32	OLIG2 (ENSLAFG00000028347) #33	OLIG1 (ENSLAFG00000007964)	IFNAR2 (ENSLAFG00000014030) #34	IL10RB (ENSLAFG00000014033)	IFNAR1 (ENSLAFG00000014039) #35
Elephant	MODERN SPECIES	503	PDILT (ENSLAFG00000001161)	ENSLAFG00000029667	ENSLAFG00000010811	ENSLAFG00000022957	ACSM4 (ENSLAFG00000027196)	THUMPD1 (ENSLAFG00000025838)	ACSM3 (ENSLAFG00000006155)	ERI2 (ENSLAFG00000023379)	REXO5 (ENSLAFG00000006157)	DCUN1D3 (ENSLAFG00000006161)	LYRM1 (ENSLAFG00000031222)	DNAH3 (ENSLAFG00000003029)	ZP2 (ENSLAFG00000015577)	ANKS4B (ENSLAFG00000015589)	CRYM (ENSLAFG00000015592)	ENSLAFG00000029609 #22	ENSLAFG00000022318	ENSLAFG00000032122	ENSLAFG00000003171	ENSLAFG00000029576	UQCRC2 (ENSLAFG00000015572)	PDZD9 (ENSLAFG00000030023)	MOSMO (ENSLAFG00000021436)	VWA3A (ENSLAFG00000008753)	SDR42E2 (ENSLAFG00000029286)	EEF2K (ENSLAFG00000022827)	POLR3E (ENSLAFG00000016743)	CDR2 (ENSLAFG00000003440)	METTL9 (ENSLAFG00000014306)	IGSF6 (ENSLAFG00000014310)	OTOA (ENSLAFG00000030589)
Hyrax	MODERN SPECIES	3119																ENSPCAG00000009970 #22	SCAF4 (ENSPCAG00000009998) #23
Tenrec	MODERN SPECIES	3803																SOD1 (ENSETEG00000000581) #22	SCAF4 (ENSETEG00000000583) #23
Marsupialia	ANCESTRAL SPECIES	23	ENSGT00940000157065	ENSGT00940000164632.b	ENSGT00390000015060	ENSGT00390000014606	ENSGT00940000161679	ENSGT00940000154497.B	ENSGT01100000263796	ENSGT00390000010669	ENSGT00940000154497.A	ENSGT00940000159870	ENSGT00940000159602	ENSGT00940000159255	ENSGT00510000046499	ENSGT00940000153577.A	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00390000003873	ENSGT00950000182836.b.b.b.a.a	ENSGT00390000011821.b	ENSGT00940000154826	ENSGT00390000003874	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505	ENSGT00390000012196	ENSGT00390000012174
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000157065	ENSGT00940000164632.b	ENSGT00390000015060	ENSGT00390000014606	ENSGT00940000161679	ENSGT00940000154497.B	ENSGT01100000263796	ENSGT00390000010669	ENSGT00940000154497.A	ENSGT00940000159870	ENSGT00940000159602	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00940000156294 #18	ENSGT00940000155551.c #22	ENSGT00530000063946.a #23	ENSGT00390000003873	ENSGT00940000160202	ENSGT00940000160662	ENSGT00990000203615.b.a.a.a.b	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b	ENSGT00940000154465.C	ENSGT00390000013771	ENSGT00390000002429	ENSGT00390000001844.a.a	ENSGT00940000159353	ENSGT00940000157860	ENSGT00550000074783
Diprotodontia	ANCESTRAL SPECIES	47	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000164632.b	ENSGT00390000015060	ENSGT00390000014606	ENSGT00940000154497.B	ENSGT01100000263796	ENSGT00390000010669	ENSGT00940000154497.A	ENSGT00940000159870	ENSGT00940000159602	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00940000156294 #18	ENSGT00940000155551.c #22	ENSGT00530000063946.a #23	ENSGT00390000003873	ENSGT00940000160202	ENSGT00940000160662	ENSGT00990000203615.b.a.a.a.b	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b	ENSGT00940000154465.C	ENSGT00390000013771	ENSGT00390000002429	ENSGT00390000001844.a.a	ENSGT00940000159353	ENSGT00940000157860	ENSGT00550000074783
Diprotodontia_a	ANCESTRAL SPECIES	44	ENSGT00390000013113	ENSGT00940000157065	ENSGT00940000164632.b	ENSGT00390000015060.a	ENSGT00390000014606	ENSGT00940000154497.B	ENSGT01100000263796	ENSGT00390000010669	ENSGT00940000154497.A	ENSGT00940000159870	ENSGT00940000159602	ENSGT00940000159255	ENSGT00940000153577.A	ENSGT00510000046499	ENSGT00940000156294 #18	ENSGT00940000155551.c #22	ENSGT00530000063946.a #23	ENSGT00390000003873	ENSGT00940000160202	ENSGT00940000160662	ENSGT00990000203615.b.a.a.a.b	ENSGT01080000257365.b.a.b.a.a	ENSGT00940000157408	ENSGT00950000183064.b	ENSGT00940000154465.C	ENSGT00390000013771	ENSGT00390000002429	ENSGT00390000001844.a.a	ENSGT00940000159353	ENSGT00940000157860	ENSGT00550000074783
Common wonbat	MODERN SPECIES	1045	ENSVURG00010004486	ENSVURG00010004495	ENSVURG00010004505	ENSVURG00010004526	ENSVURG00010004532	C21orf140 (ENSVURG00010004540)	ENSVURG00010004544	RCAN1 (ENSVURG00010004550)	ENSVURG00010004605	RUNX1 (ENSVURG00010004671)	ENSVURG00010004739	ENSVURG00010004748	SETD4 (ENSVURG00010004756)	ENSVURG00010004777	TIAM1 (ENSVURG00010004803) #18	ENSVURG00010004902 #22	SCAF4 (ENSVURG00010004913) #23	TRAPPC10 (ENSVURG00010004938)	ETS2 (ENSVURG00010004972)	ERG (ENSVURG00010005031)	ENSVURG00010005062	KCNJ15 (ENSVURG00010005075)	KCNJ6 (ENSVURG00010005090)	DYRK1A (ENSVURG00010005101)	VPS26C (ENSVURG00010005140)	ENSVURG00010005159	PIGP (ENSVURG00010005196)	C21orf91 (ENSVURG00010005203)	CHODL (ENSVURG00010005219)	TMPRSS15 (ENSVURG00010005266)	NCAM2 (ENSVURG00010005455)
koala	MODERN SPECIES	61	KCNE2 (ENSPCIG00000008942)	ENSPCIG00000008941	C21orf140 (ENSPCIG00000008940)	KCNE1 (ENSPCIG00000008936)	RCAN1 (ENSPCIG00000008935)	ENSPCIG00000008934	RUNX1 (ENSPCIG00000008933)	ENSPCIG00000031436	ENSPCIG00000012826	ENSPCIG00000012831	ENSPCIG00000012832	SETD4 (ENSPCIG00000012833)	ENSPCIG00000033544	ENSPCIG00000035108	TIAM1 (ENSPCIG00000012837) #18	SOD1 (ENSPCIG00000028182) #22	SCAF4 (ENSPCIG00000028183) #23	TRAPPC10 (ENSPCIG00000011933)	ETS2 (ENSPCIG00000024682)	ERG (ENSPCIG00000022944)	KCNJ15 (ENSPCIG00000022948)	KCNJ6 (ENSPCIG00000009713)	DYRK1A (ENSPCIG00000022327)	VPS26C (ENSPCIG00000005411)	ENSPCIG00000020079	ENSPCIG00000030735	PIGP (ENSPCIG00000010155)	C21orf91 (ENSPCIG00000010157)	CHODL (ENSPCIG00000010159)	TMPRSS15 (ENSPCIG00000010163)	NCAM2 (ENSPCIG00000014144)
Wallaby	MODERN SPECIES	4941																ENSMEUG00000014766 #22
Tasmanian devil	MODERN SPECIES	2	CRYZL1 (ENSSHAG00000005975)	ITSN1 (ENSSHAG00000002428)	ATP5PO (ENSSHAG00000000409)	SLC5A3 (ENSSHAG00000031820)	KCNE2 (ENSSHAG00000001622)	ENSSHAG00000016273	C21orf140 (ENSSHAG00000016240)	KCNE1 (ENSSHAG00000031363)	RCAN1 (ENSSHAG00000016384)	ENSSHAG00000022481	RUNX1 (ENSSHAG00000014782)	ENSSHAG00000027118	SETD4 (ENSSHAG00000008853)	ENSSHAG00000008714	ENSSHAG00000007634 #18	ENSSHAG00000020925 #22	ENSSHAG00000001581 #23	ENSSHAG00000003843	ENSSHAG00000007055	ERG (ENSSHAG00000008486)	KCNJ15 (ENSSHAG00000022244)	ENSSHAG00000022321	KCNJ6 (ENSSHAG00000026648)	DYRK1A (ENSSHAG00000026536)	VPS26C (ENSSHAG00000013325)	ENSSHAG00000013708	ENSSHAG00000014284	ENSSHAG00000026194	CHODL (ENSSHAG00000005249)	TMPRSS15 (ENSSHAG00000005881)	ENSSHAG00000009183
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000155551.d #22
Tasmanian devil	MODERN SPECIES		SLC14A2 (ENSSHAG00000016114)	SLC14A1 (ENSSHAG00000032087)	ENSSHAG00000016659	EPG5 (ENSSHAG00000016721)	PSTPIP2 (ENSSHAG00000017036)	ENSSHAG00000017177	HAUS1 (ENSSHAG00000030289)	C18orf25 (ENSSHAG00000017414)	RNF165 (ENSSHAG00000017805)	ENSSHAG00000017868	ST8SIA5 (ENSSHAG00000021657)	PIAS2 (ENSSHAG00000005954)	KATNAL2 (ENSSHAG00000003042)	HDHD2 (ENSSHAG00000024217)	SKOR2 (ENSSHAG00000025447)	ENSSHAG00000012107 #22	SMAD2 (ENSSHAG00000012837)	ZBTB7C (ENSSHAG00000024277)	CTIF (ENSSHAG00000027815)	SMAD7 (ENSSHAG00000017444)	DYM (ENSSHAG00000001181)	ENSSHAG00000030929	ENSSHAG00000003060	LIPG (ENSSHAG00000004911)	ACAA2 (ENSSHAG00000001241)	ENSSHAG00000003364	ENSSHAG00000010062	ENSSHAG00000026350	ENSSHAG00000010788	ENSSHAG00000013029	ENSSHAG00000008004
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000155551.d #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000155551.d #22
Common wonbat	MODERN SPECIES	1018	NCKAP1 (ENSVURG00010018153)	FRZB (ENSVURG00010018207)	DNAJC10 (ENSVURG00010018215)	PDE1A (ENSVURG00010018247)	ENSVURG00010018272	PPP1R1C (ENSVURG00010018283)	ITPRID2 (ENSVURG00010018289)	CERKL (ENSVURG00010018329)	ITGA4 (ENSVURG00010018355)	UBE2E3 (ENSVURG00010018376)	ENSVURG00010018397	ENSVURG00010018614	ZNF385B (ENSVURG00010018627)	SESTD1 (ENSVURG00010018662)	CCDC141 (ENSVURG00010018675)	ENSVURG00010018694 #22	ENSVURG00010018699	ENSVURG00010018702	ENSVURG00010018707	ENSVURG00010018717	ENSVURG00010018731	FKBP7 (ENSVURG00010018739)	PJVK (ENSVURG00010018750)	PRKRA (ENSVURG00010018771)	OSBPL6 (ENSVURG00010018808)	RBM45 (ENSVURG00010018862)	ENSVURG00010018867	PDE11A (ENSVURG00010018883)	ENSVURG00010018908	AGPS (ENSVURG00010018947)	ENSVURG00010019089
Opossum	MODERN SPECIES	3	ENSMODG00000039435	MRPS6 (ENSMODG00000021054)	ENSMODG00000027435	KCNE2 (ENSMODG00000025352)	ENSMODG00000046807	C21orf140 (ENSMODG00000025353)	KCNE1 (ENSMODG00000025354)	RCAN1 (ENSMODG00000021053)	ENSMODG00000041490	ENSMODG00000021052	RUNX1 (ENSMODG00000021051)	SETD4 (ENSMODG00000021048)	ENSMODG00000021047	ENSMODG00000050855	TIAM1 (ENSMODG00000021043) #18	SOD1 (ENSMODG00000021041) #22	SCAF4 (ENSMODG00000021040) #23	TRAPPC10 (ENSMODG00000021039)	AGPAT3 (ENSMODG00000021037)	ENSMODG00000051346	CSTB (ENSMODG00000021035)	PDXK (ENSMODG00000021034)	ENSMODG00000037340	RRP1B (ENSMODG00000021033)	HSF2BP (ENSMODG00000021032)	SIK1 (ENSMODG00000021031)	CRYAA (ENSMODG00000021030)	U2AF1 (ENSMODG00000029158)	CBS (ENSMODG00000021028)	PKNOX1 (ENSMODG00000021026)	ENSMODG00000021025
Platypus	MODERN SPECIES	8	ENSOANG00000020324	ENSOANG00000039154	ENSOANG00000041737	ENSOANG00000040587	ENSOANG00000041778	ENSOANG00000004383 #10	ENSOANG00000004817	ENSOANG00000050864	ENSOANG00000037981	ENSOANG00000046154	ENSOANG00000039257	KRTAP20-2 (ENSOANG00000048857)	KRTAP8-1 (ENSOANG00000048155)	KRTAP7-1 (ENSOANG00000040530)	TIAM1 (ENSOANG00000044528) #18	ENSOANG00000050535 #22	SCAF4 (ENSOANG00000008438) #23	ENSOANG00000036875 #25	ENSOANG00000014694 #26	URB1 (ENSOANG00000050725) #27	EVA1C (ENSOANG00000001678) #28	CFAP298 (ENSOANG00000040755) #29	SYNJ1 (ENSOANG00000006929) #30	PAXBP1 (ENSOANG00000006928) #31	ENSOANG00000038158 #32	ENSOANG00000037359	ENSOANG00000047047	ENSOANG00000001422	CLDN8 (ENSOANG00000045624)	CLDN17 (ENSOANG00000040952)	GRIK1 (ENSOANG00000004652)
Sauria	ANCESTRAL SPECIES	2	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Archelosauria	ANCESTRAL SPECIES		ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Cryptodira	ANCESTRAL SPECIES		ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00940000156815	ENSGT00940000159090.a	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Testudinidae	ANCESTRAL SPECIES		ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090.a	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT01000000214979	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000156197.cb	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Abingdon island giant tortoise	MODERN SPECIES	2026												GRIK1 (ENSCABG00000019233)	ENSCABG00000019219	ENSCABG00000019218	TIAM1 (ENSCABG00000019212) #18	SOD1 (ENSCABG00000019208) #22	ENSCABG00000019206	ENSCABG00000019204	ENSCABG00000019203	HUNK (ENSCABG00000019199) #24	MIS18A (ENSCABG00000019198) #25	URB1 (ENSCABG00000019194) #27
Goode s thornscrub tortoise	MODERN SPECIES		ENSGEVG00005001961	CYYR1 (ENSGEVG00005001949)	ADAMTS1 (ENSGEVG00005001837)	ADAMTS5 (ENSGEVG00005001773)	N6AMT1 (ENSGEVG00005001701)	LTN1 (ENSGEVG00005001657)	RWDD2B (ENSGEVG00005001631)	USP16 (ENSGEVG00005001540)	CCT8 (ENSGEVG00005001396)	ENSGEVG00005001378	BACH1 (ENSGEVG00005001367)	GRIK1 (ENSGEVG00005001006)	CLDN17 (ENSGEVG00005000767)	CLDN8 (ENSGEVG00005000760)	TIAM1 (ENSGEVG00005000612) #18	SOD1 (ENSGEVG00005000472) #22	ENSGEVG00005000429 #23	ENSGEVG00005000412	HUNK (ENSGEVG00005000385) #24	ENSGEVG00005000364	URB1 (ENSGEVG00005000249) #27	ENSGEVG00005000158	CFAP298 (ENSGEVG00005000093) #29	SYNJ1 (ENSGEVG00005000030) #30	PAXBP1 (ENSGEVG00005000005) #31	C21orf62 (ENSGEVG00005000002) #32	OLIG2 (ENSGEVG00005003880) #33	OLIG1 (ENSGEVG00005003873)	ENSGEVG00005003864 #34	IL10RB (ENSGEVG00005003840)	IFNAR1 (ENSGEVG00005003820) #35
Emydidae	ANCESTRAL SPECIES	28			ENSGT00390000013073.e	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000162550	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	10					ENSTMTG00000020435	ENSTMTG00000020409	ENSTMTG00000020393	ENSTMTG00000020337	ENSTMTG00000020207	ENSTMTG00000020180	ENSTMTG00000020176	ENSTMTG00000019907	ENSTMTG00000019876	ENSTMTG00000019872	ENSTMTG00000019799 #18	ENSTMTG00000019783 #22	SCAF4 (ENSTMTG00000019535) #23	ENSTMTG00000019490 #24	ENSTMTG00000019478 #25	ENSTMTG00000019471	ENSTMTG00000018002 #27	ENSTMTG00000017824	ENSTMTG00000017801 #29	ENSTMTG00000012582 #30	ENSTMTG00000011999 #31	ENSTMTG00000011989 #32	ENSTMTG00000011981 #33	ENSTMTG00000011961	ENSTMTG00000011937 #34	ENSTMTG00000011902	ENSTMTG00000011799 #35
Three-toed box turtle	MODERN SPECIES	11					ENSTMTG00000020805	ENSTMTG00000020569	ENSTMTG00000020533	ENSTMTG00000020479	ENSTMTG00000020442	MAP3K7CL (ENSTMTG00000020422)	ENSTMTG00000020416	ENSTMTG00000020356	CLDN17 (ENSTMTG00000020344)	ENSTMTG00000020340	ENSTMTG00000020286 #18	ENSTMTG00000020272 #22	ENSTMTG00000020244	ENSTMTG00000020228 #24	ENSTMTG00000020221 #25	ENSTMTG00000020219	ENSTMTG00000019967 #27	ENSTMTG00000019920	ENSTMTG00000019906 #29	ENSTMTG00000013030 #30	ENSTMTG00000012243 #31	ENSTMTG00000012221 #32	ENSTMTG00000012210 #33	ENSTMTG00000012195	ENSTMTG00000012170 #34	ENSTMTG00000012159	ENSTMTG00000012138 #35
painted turtle	MODERN SPECIES	2425				N6AMT1 (ENSCPBG00000006708)	LTN1 (ENSCPBG00000006692)	RWDD2B (ENSCPBG00000006685)	USP16 (ENSCPBG00000006656)	CCT8 (ENSCPBG00000006647)	ENSCPBG00000006646	ENSCPBG00000006640	BACH1 (ENSCPBG00000006636)	GRIK1 (ENSCPBG00000006620)	ENSCPBG00000006611	CLDN8 (ENSCPBG00000006607)	TIAM1 (ENSCPBG00000006581) #18	SOD1 (ENSCPBG00000006568) #22	ENSCPBG00000006561	HUNK (ENSCPBG00000006541) #24	MIS18A (ENSCPBG00000006476) #25	ENSCPBG00000006469	URB1 (ENSCPBG00000006454) #27	ENSCPBG00000006446	CFAP298 (ENSCPBG00000006417) #29	ENSCPBG00000006414	SYNJ1 (ENSCPBG00000006402) #30	PAXBP1 (ENSCPBG00000005787) #31	C21orf62 (ENSCPBG00000005758) #32	OLIG2 (ENSCPBG00000005751) #33	OLIG1 (ENSCPBG00000005746)	ENSCPBG00000005740 #34	IL10RB (ENSCPBG00000005731)
Chinese turtle	MODERN SPECIES	1269							LTN1 (ENSPSIG00000017363)	RWDD2B (ENSPSIG00000017176)	USP16 (ENSPSIG00000017125)	CCT8 (ENSPSIG00000016718)	ENSPSIG00000016491	ENSPSIG00000016485	GRIK1 (ENSPSIG00000015431)	CLDN8 (ENSPSIG00000001990)	TIAM1 (ENSPSIG00000014519) #18	SOD1 (ENSPSIG00000014318) #22	SCAF4 (ENSPSIG00000014242) #23	HUNK (ENSPSIG00000014236) #24	ENSPSIG00000014098 #25	URB1 (ENSPSIG00000013889) #27	ENSPSIG00000013637	CFAP298 (ENSPSIG00000013627) #29	PAXBP1 (ENSPSIG00000013608) #31	C21orf62 (ENSPSIG00000001989) #32	OLIG2 (ENSPSIG00000001988) #33	ENSPSIG00000013150 #34	IL10RB (ENSPSIG00000012993)	IFNAR1 (ENSPSIG00000012446) #35	IFNGR2 (ENSPSIG00000012154) #36	TMEM50B (ENSPSIG00000012136) #37	DNAJC28 (ENSPSIG00000001987)
Archosauria	ANCESTRAL SPECIES	2	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Aves	ANCESTRAL SPECIES		ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
African ostrich	MODERN SPECIES	353			ADAMTS1 (ENSSCUG00000004336)	ADAMTS5 (ENSSCUG00000004333)	N6AMT1 (ENSSCUG00000004320)	LTN1 (ENSSCUG00000004317)	RWDD2B (ENSSCUG00000004316)	USP16 (ENSSCUG00000004315)	CCT8 (ENSSCUG00000004313)	ENSSCUG00000004310	BACH1 (ENSSCUG00000004309)	GRIK1 (ENSSCUG00000004307)	ENSSCUG00000004306	CLDN8 (ENSSCUG00000004305)	TIAM1 (ENSSCUG00000004300) #18	SOD1 (ENSSCUG00000004297) #22	SCAF4 (ENSSCUG00000004295) #23	HUNK (ENSSCUG00000004294) #24	ENSSCUG00000004292	URB1 (ENSSCUG00000004268) #27	ENSSCUG00000004249	CFAP298 (ENSSCUG00000004245) #29	ENSSCUG00000004243	SYNJ1 (ENSSCUG00000004235) #30	PAXBP1 (ENSSCUG00000004223) #31	C21orf62 (ENSSCUG00000004214) #32	ENSSCUG00000004210 #34	IL10RB (ENSSCUG00000004206)	IFNAR1 (ENSSCUG00000004204) #35	IFNGR2 (ENSSCUG00000004200) #36	TMEM50B (ENSSCUG00000004198) #37
Neognathae	ANCESTRAL SPECIES	1	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Neognathae_b	ANCESTRAL SPECIES		ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT00650000093475 #26	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Kakapo	MODERN SPECIES	11	APP (ENSSHBG00005004996)	CYYR1 (ENSSHBG00005005007)	ADAMTS1 (ENSSHBG00005005010)	ADAMTS5 (ENSSHBG00005005017)	N6AMT1 (ENSSHBG00005005026)	LTN1 (ENSSHBG00005005029)	RWDD2B (ENSSHBG00005005039)	USP16 (ENSSHBG00005005059)	CCT8 (ENSSHBG00005005139)	ENSSHBG00005005145	BACH1 (ENSSHBG00005005151)	GRIK1 (ENSSHBG00005005159)	ENSSHBG00005005170	CLDN8 (ENSSHBG00005005174)	TIAM1 (ENSSHBG00005005192) #18	SOD1 (ENSSHBG00005005258) #22	SCAF4 (ENSSHBG00005005308) #23	HUNK (ENSSHBG00005005413) #24	MIS18A (ENSSHBG00005005431) #25	ENSSHBG00005000652	URB1 (ENSSHBG00005000653) #27	EVA1C (ENSSHBG00005000654) #28	CFAP298 (ENSSHBG00005000655) #29	SYNJ1 (ENSSHBG00005000656) #30	PAXBP1 (ENSSHBG00005000657) #31	C21orf62 (ENSSHBG00005000659) #32	OLIG2 (ENSSHBG00005000660) #33	ENSSHBG00005000661 #34	IL10RB (ENSSHBG00005006196)	IFNAR1 (ENSSHBG00005006252) #35	IFNGR2 (ENSSHBG00005006267) #36
Golden eagle	MODERN SPECIES	23	APP (ENSACCG00020007693)	CYYR1 (ENSACCG00020004880)	ADAMTS1 (ENSACCG00020004899)	ADAMTS5 (ENSACCG00020004915)	N6AMT1 (ENSACCG00020004930)	LTN1 (ENSACCG00020004947)	RWDD2B (ENSACCG00020004960)	USP16 (ENSACCG00020004988)	CCT8 (ENSACCG00020005014)	ENSACCG00020005039	BACH1 (ENSACCG00020005048)	GRIK1 (ENSACCG00020005057)	ENSACCG00020005069	CLDN8 (ENSACCG00020005074)	TIAM1 (ENSACCG00020005088) #18	SOD1 (ENSACCG00020005106) #22	SCAF4 (ENSACCG00020005118) #23	HUNK (ENSACCG00020005135) #24	MIS18A (ENSACCG00020005146) #25	ENSACCG00020005154	URB1 (ENSACCG00020005176) #27	EVA1C (ENSACCG00020005195) #28	CFAP298 (ENSACCG00020005209) #29	SYNJ1 (ENSACCG00020005260) #30	PAXBP1 (ENSACCG00020005378) #31	C21orf62 (ENSACCG00020005441) #32	OLIG2 (ENSACCG00020005454) #33	ENSACCG00020005490 #34	IFNAR1 (ENSACCG00020005623) #35	IFNGR2 (ENSACCG00020005644) #36	TMEM50B (ENSACCG00020005662) #37
Passeriformes	ANCESTRAL SPECIES	24	ENSGT00390000004396	ENSGT00940000158967	ENSGT00950000182944.A	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00940000161241	ENSGT00940000163239	ENSGT00390000006450	ENSGT00940000155001.B	ENSGT00940000158353	ENSGT00940000154868.b	ENSGT01080000257336.a.c.a	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000158090	ENSGT00390000005948	ENSGT00960000187460	ENSGT00390000012955	ENSGT00940000154769	ENSGT00390000013989.b	ENSGT00390000005140.b.a	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT01030000234621.C.a.a.b	ENSGT00510000046732.A	ENSGT00390000008610.a.a
Great tit	MODERN SPECIES		C2CD3 (ENSPMJG00000002786)	PPME1 (ENSPMJG00000002781)	P4HA3 (ENSPMJG00000002118)	NEU3 (ENSPMJG00000002108)	SPCS2 (ENSPMJG00000002098)	RNF169 (ENSPMJG00000002090)	CHRDL2 (ENSPMJG00000001802)	ENSPMJG00000001741	KCNE3 (ENSPMJG00000001739)	PGM2L1 (ENSPMJG00000001729)	SLCO2B1 (ENSPMJG00000001715)	ENSPMJG00000001713	GRIK1 (ENSPMJG00000001690)	CLDN8 (ENSPMJG00000001672)	TIAM1 (ENSPMJG00000001605) #18	SOD1 (ENSPMJG00000001552) #22	ENSPMJG00000001545	HUNK (ENSPMJG00000001540) #24	DNAJB13 (ENSPMJG00000001531)	PAAF1 (ENSPMJG00000001520)	ENSPMJG00000001509	MRPL48 (ENSPMJG00000001487)	RAB6A (ENSPMJG00000001471)	PLEKHB1 (ENSPMJG00000001431)	FAM168A (ENSPMJG00000001413)	RELT (ENSPMJG00000001399)	ARHGEF17 (ENSPMJG00000001318)	P2RY6 (ENSPMJG00000001311)	P2RY2 (ENSPMJG00000001310)	FCHSD2 (ENSPMJG00000001229)	ENSPMJG00000001079
Passeriformes_d	ANCESTRAL SPECIES	27	ENSGT00390000004396	ENSGT00940000158967	ENSGT00950000182944.A	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00940000161241	ENSGT00940000163239	ENSGT00390000006450	ENSGT00940000155001.B	ENSGT00940000158353	ENSGT00940000154868.b	ENSGT01080000257336.a.c.a	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000158090	ENSGT00390000005948	ENSGT00960000187460	ENSGT00390000012955	ENSGT00940000154769	ENSGT00390000013989.b	ENSGT00390000005140.b.a	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT01030000234621.C.a.a.b	ENSGT00510000046732.A	ENSGT00390000008610.a.a
Flycatcher	MODERN SPECIES		EPHA6 (ENSFALG00000001647)	NSUN3 (ENSFALG00000027575)	ARL13B (ENSFALG00000001654)	STX19 (ENSFALG00000014778)	PROS1 (ENSFALG00000001657)	EPHA3 (ENSFALG00000001675)	ENSFALG00000028288	C3orf38 (ENSFALG00000001712)	ZNF654 (ENSFALG00000001715)	CGGBP1 (ENSFALG00000014795)	N6AMT1 (ENSFALG00000026052)	ENSFALG00000006681	ENSFALG00000006650	ENSFALG00000006623	ENSFALG00000006601	ENSFALG00000008092 #22	ENSFALG00000008076	ENSFALG00000008061 #24	DNAJB13 (ENSFALG00000008045)	PAAF1 (ENSFALG00000008025)	ENSFALG00000014549	MRPL48 (ENSFALG00000008015)	RAB6A (ENSFALG00000024542)	PLEKHB1 (ENSFALG00000028129)	FAM168A (ENSFALG00000008000)	RELT (ENSFALG00000023817)	ARHGEF17 (ENSFALG00000007976)	P2RY6 (ENSFALG00000007970)	P2RY2 (ENSFALG00000014521)	FCHSD2 (ENSFALG00000007968)	ENSFALG00000007956
Passeriformes_g	ANCESTRAL SPECIES	28	ENSGT00390000004396	ENSGT00940000158967	ENSGT00950000182944.A	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00940000161241	ENSGT00940000163239	ENSGT00390000006450	ENSGT00940000155001.B	ENSGT00940000158353	ENSGT00940000154868.b	ENSGT01080000257336.a.c.a	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000158090	ENSGT00390000005948	ENSGT00960000187460	ENSGT00390000012955	ENSGT00940000154769	ENSGT00390000013989.b	ENSGT00390000005140.b.a	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT01030000234621.C.a.a.b	ENSGT00510000046732.A	ENSGT00390000008610.a.a
Medium ground finch	MODERN SPECIES	232														ENSGFOG00000003225	TIAM1 (ENSGFOG00000003044) #18	SOD1 (ENSGFOG00000003020) #22	SCAF4 (ENSGFOG00000002940) #23	HUNK (ENSGFOG00000002858) #24	DNAJB13 (ENSGFOG00000002842)	ENSGFOG00000002827	PAAF1 (ENSGFOG00000002813)	MRPL48 (ENSGFOG00000002796)	RAB6A (ENSGFOG00000002762)	PLEKHB1 (ENSGFOG00000002731)	FAM168A (ENSGFOG00000002717)	ARHGEF17 (ENSGFOG00000002604)	P2RY6 (ENSGFOG00000002581)	P2RY2 (ENSGFOG00000002528)	FCHSD2 (ENSGFOG00000002407)	ENSGFOG00000002047	SERPINH1 (ENSGFOG00000002005)
Passeroidea	ANCESTRAL SPECIES	30	ENSGT00390000004396	ENSGT00940000158967	ENSGT00950000182944.A	ENSGT00440000038181	ENSGT00940000153680.b	ENSGT00940000161241	ENSGT00940000163239	ENSGT00390000006450	ENSGT00940000155001.B	ENSGT00940000158353	ENSGT00940000154868.b	ENSGT01080000257336.a.c.a	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT01010000222551	ENSGT00940000161070 #24	ENSGT00940000158090	ENSGT00390000005948	ENSGT00960000187460	ENSGT00390000012955	ENSGT00940000154769	ENSGT00390000013989.b	ENSGT00390000005140.b.a	ENSGT00940000160350	ENSGT00940000153798.B	ENSGT01030000234621.C.a.b	ENSGT01030000234621.C.a.a.b	ENSGT00510000046732.A	ENSGT00390000008610.a.a
Zebra finch	MODERN SPECIES		NEU3 (ENSTGUG00000021465)	SPCS2 (ENSTGUG00000026426)	RNF169 (ENSTGUG00000013451)	ENSTGUG00000024778	CHRDL2 (ENSTGUG00000013452)	ENSTGUG00000013453	LIPT2 (ENSTGUG00000013454)	ENSTGUG00000024283	KCNE3 (ENSTGUG00000013455)	PGM2L1 (ENSTGUG00000013456)	ENSTGUG00000013457	SLCO2B1 (ENSTGUG00000013458)	GRIK1 (ENSTGUG00000013459)	CLDN8 (ENSTGUG00000013460)	TIAM1 (ENSTGUG00000013461) #18	SOD1 (ENSTGUG00000013463) #22	ENSTGUG00000013464	HUNK (ENSTGUG00000013465) #24	DNAJB13 (ENSTGUG00000013466)	PAAF1 (ENSTGUG00000013467)	ENSTGUG00000013468	MRPL48 (ENSTGUG00000013469)	RAB6A (ENSTGUG00000013470)	PLEKHB1 (ENSTGUG00000013472)	FAM168A (ENSTGUG00000023375)	RELT (ENSTGUG00000013475)	ARHGEF17 (ENSTGUG00000013476)	P2RY6 (ENSTGUG00000013477)	P2RY2 (ENSTGUG00000013478)	SERPINH1 (ENSTGUG00000013481)	FCHSD2 (ENSTGUG00000013479)
Common canary	MODERN SPECIES	19	C2CD3 (ENSSCAG00000013358)	PPME1 (ENSSCAG00000013383)	P4HA3 (ENSSCAG00000013395)	SPCS2 (ENSSCAG00000013418)	RNF169 (ENSSCAG00000013419)	CHRDL2 (ENSSCAG00000013428)	ENSSCAG00000013441	ENSSCAG00000013451	KCNE3 (ENSSCAG00000013454)	PGM2L1 (ENSSCAG00000013458)	SLCO2B1 (ENSSCAG00000013469)	ENSSCAG00000013474	GRIK1 (ENSSCAG00000013503)	CLDN8 (ENSSCAG00000013634)	TIAM1 (ENSSCAG00000013654) #18	SOD1 (ENSSCAG00000013812) #22	ENSSCAG00000013816	HUNK (ENSSCAG00000013828) #24	DNAJB13 (ENSSCAG00000013841)	PAAF1 (ENSSCAG00000013849)	ENSSCAG00000013854	MRPL48 (ENSSCAG00000013857)	RAB6A (ENSSCAG00000013861)	PLEKHB1 (ENSSCAG00000013864)	FAM168A (ENSSCAG00000013866)	RELT (ENSSCAG00000013871)	ARHGEF17 (ENSSCAG00000013879)	P2RY6 (ENSSCAG00000000126)	P2RY2 (ENSSCAG00000000139)	FCHSD2 (ENSSCAG00000000151)	ENSSCAG00000000191
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Phasianidae	ANCESTRAL SPECIES		ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253.d	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964.c #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Japanese quail	MODERN SPECIES		ENSCJPG00005004707	CYYR1 (ENSCJPG00005004709)	ADAMTS1 (ENSCJPG00005004712)	ADAMTS5 (ENSCJPG00005004720)	N6AMT1 (ENSCJPG00005004732)	LTN1 (ENSCJPG00005004734)	RWDD2B (ENSCJPG00005004743)	USP16 (ENSCJPG00005004746)	CCT8 (ENSCJPG00005004846)	ENSCJPG00005004856	BACH1 (ENSCJPG00005004860)	GRIK1 (ENSCJPG00005004862)	ENSCJPG00005004892	CLDN8 (ENSCJPG00005004895)	TIAM1 (ENSCJPG00005004897) #18	SOD1 (ENSCJPG00005005140) #22	SCAF4 (ENSCJPG00005005142) #23	HUNK (ENSCJPG00005005154) #24	MIS18A (ENSCJPG00005005158) #25	ENSCJPG00005005161	URB1 (ENSCJPG00005005198) #27	EVA1C (ENSCJPG00005005210) #28	CFAP298 (ENSCJPG00005005211) #29	SYNJ1 (ENSCJPG00005005212) #30	PAXBP1 (ENSCJPG00005005407) #31	C21orf62 (ENSCJPG00005005459) #32	OLIG2 (ENSCJPG00005005461) #33	ENSCJPG00005005490 #34	IL10RB (ENSCJPG00005005496)	IFNAR1 (ENSCJPG00005005509) #35	IFNGR2 (ENSCJPG00005005552) #36
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253.d	ENSGT00940000159077.b	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964.c #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35	ENSGT00940000160503 #36
Chicken	MODERN SPECIES		GABPA (ENSGALG00010010887)	APP (ENSGALG00010010915)	CYYR1 (ENSGALG00010010931)	ADAMTS1 (ENSGALG00010010659)	ADAMTS5 (ENSGALG00010010712)	N6AMT1 (ENSGALG00010009831)	LTN1 (ENSGALG00010009868)	RWDD2B (ENSGALG00010009914)	USP16 (ENSGALG00010009985)	CCT8 (ENSGALG00010010077)	MAP3K7CL (ENSGALG00010011586)	BACH1 (ENSGALG00010011622)	GRIK1 (ENSGALG00010011636)	CLDN8 (ENSGALG00010011654)	TIAM1 (ENSGALG00010011699) #18	SOD1 (ENSGALG00010011746) #22	SCAF4 (ENSGALG00010011797) #23	HUNK (ENSGALG00010010271) #24	MIS18A (ENSGALG00010010274) #25	ENSGALG00010010285	URB1 (ENSGALG00010010305) #27	EVA1C (ENSGALG00010010405) #28	C21orf59 (ENSGALG00010010423) #29	SYNJ1 (ENSGALG00010010534) #30	PAXBP1 (ENSGALG00010010575) #31	C21orf62 (ENSGALG00010010633) #32	OLIG2 (ENSGALG00010010227) #33	IFNAR2 (ENSGALG00010010156) #34	IL10RB (ENSGALG00010010253)	IFNAR1 (ENSGALG00010012049) #35	IFNGR2 (ENSGALG00010012077) #36
Turkey	MODERN SPECIES		ENSMGAG00000014518 #35	ENSMGAG00000021643	ENSMGAG00000014519	ENSMGAG00000014520 #34	ENSMGAG00000016135 #32	ENSMGAG00000014521 #31	ENSMGAG00000022007 #30	ENSMGAG00000018601	ENSMGAG00000014522 #30	ENSMGAG00000014523 #28	ENSMGAG00000014517 #29	ENSMGAG00000014512 #27	ENSMGAG00000014514 #25	ENSMGAG00000018693	ENSMGAG00000014513 #24	ENSMGAG00000014516 #22	ENSMGAG00000014515 #23	ENSMGAG00000014511 #18	CLDN8 (ENSMGAG00000016126)	ENSMGAG00000016122	GRIK1 (ENSMGAG00000014509)	BACH1 (ENSMGAG00000014508)	ENSMGAG00000017623	CCT8 (ENSMGAG00000014505)	USP16 (ENSMGAG00000014504)	RWDD2B (ENSMGAG00000021192)	LTN1 (ENSMGAG00000014502)	ENSMGAG00000014501	ENSMGAG00000020050	ADAMTS5 (ENSMGAG00000014499)	ADAMTS1 (ENSMGAG00000014497)
Anatidae	ANCESTRAL SPECIES	6	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT01000000219273	ENSGT00510000049322 #34	ENSGT00940000158231
Pink-footed goose	MODERN SPECIES	161											ENSABRG00000014710	BACH1 (ENSABRG00000014718)	GRIK1 (ENSABRG00000014734)	CLDN8 (ENSABRG00000014755)	TIAM1 (ENSABRG00000014761) #18	SOD1 (ENSABRG00000014784) #22	SCAF4 (ENSABRG00000014786) #23	HUNK (ENSABRG00000014790) #24	MIS18A (ENSABRG00000014795) #25	URB1 (ENSABRG00000014818) #27	ENSABRG00000015064	CFAP298 (ENSABRG00000015139) #29	SYNJ1 (ENSABRG00000015188) #30	PAXBP1 (ENSABRG00000015509) #31	ENSABRG00000015520	ENSABRG00000015530	C21orf62 (ENSABRG00000015552) #32	OLIG2 (ENSABRG00000015558) #33	ENSABRG00000015569	ENSABRG00000015574 #34	IL10RB (ENSABRG00000015588)
Duck	MODERN SPECIES	3389																SOD1 (ENSAPLG00000029333) #22
Australian saltwater crocodile	MODERN SPECIES	27	APP (ENSCPRG00005013421)	ADAMTS1 (ENSCPRG00005013434)	ADAMTS5 (ENSCPRG00005013460)	N6AMT1 (ENSCPRG00005013488)	LTN1 (ENSCPRG00005013498)	RWDD2B (ENSCPRG00005013565)	USP16 (ENSCPRG00005013579)	CCT8 (ENSCPRG00005013638)	ENSCPRG00005013704	ENSCPRG00005013709	BACH1 (ENSCPRG00005013728)	GRIK1 (ENSCPRG00005013772)	ENSCPRG00005013959	CLDN8 (ENSCPRG00005013960)	TIAM1 (ENSCPRG00005013974) #18	SOD1 (ENSCPRG00005013987) #22	SCAF4 (ENSCPRG00005013993) #23	HUNK (ENSCPRG00005014007) #24	MIS18A (ENSCPRG00005014010) #25	URB1 (ENSCPRG00005014101) #27	EVA1C (ENSCPRG00005014425) #28	CFAP298 (ENSCPRG00005014434) #29	SYNJ1 (ENSCPRG00005014469) #30	PAXBP1 (ENSCPRG00005014480) #31	C21orf62 (ENSCPRG00005014492) #32	ENSCPRG00005014507	IFNAR1 (ENSCPRG00005014514) #35	IFNGR2 (ENSCPRG00005014541) #36	TMEM50B (ENSCPRG00005014547) #37	DNAJC28 (ENSCPRG00005014551)	ENSCPRG00005014597
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1569						N6AMT1 (ENSSPUG00000011186)	LTN1 (ENSSPUG00000011232)	RWDD2B (ENSSPUG00000011256)	USP16 (ENSSPUG00000011270)	CCT8 (ENSSPUG00000011304)	ENSSPUG00000011387	BACH1 (ENSSPUG00000011409)	GRIK1 (ENSSPUG00000011569)	CLDN8 (ENSSPUG00000012225)	TIAM1 (ENSSPUG00000012240) #18	ENSSPUG00000012272 #22	ENSSPUG00000012294	HUNK (ENSSPUG00000012338) #24	MIS18A (ENSSPUG00000012399) #25	ENSSPUG00000012424	URB1 (ENSSPUG00000012447) #27	ENSSPUG00000012497	CFAP298 (ENSSPUG00000012531) #29	SYNJ1 (ENSSPUG00000012552) #30	PAXBP1 (ENSSPUG00000012587) #31	OLIG2 (ENSSPUG00000012607) #33	IL10RB (ENSSPUG00000012625)	IFNAR1 (ENSSPUG00000012631) #35	IFNGR2 (ENSSPUG00000012647) #36	TMEM50B (ENSSPUG00000012662) #37	DNAJC28 (ENSSPUG00000012676)
tuatara	MODERN SPECIES	74				ENSSPUG00000011682	ENSSPUG00000011696	ENSSPUG00000011704	ENSSPUG00000011713	DIS3 (ENSSPUG00000011738)	PIBF1 (ENSSPUG00000011859)	KLF5 (ENSSPUG00000011885)	KLF12 (ENSSPUG00000011898)	TBC1D4 (ENSSPUG00000011919)	COMMD6 (ENSSPUG00000011934)	UCHL3 (ENSSPUG00000011947)	LMO7 (ENSSPUG00000011972)	ENSSPUG00000012004 #22	ENSSPUG00000012021
tuatara	MODERN SPECIES	699					IMPG2 (ENSSPUG00000018646)	SENP7 (ENSSPUG00000018566)	ENSSPUG00000018509	TXNL4B (ENSSPUG00000018503)	TRMT10C (ENSSPUG00000018495)	PCNP (ENSSPUG00000018491)	ZBTB11 (ENSSPUG00000018482)	RPL24 (ENSSPUG00000018475)	CEP97 (ENSSPUG00000018450)	NXPE3 (ENSSPUG00000018418)	NFKBIZ (ENSSPUG00000018407)	ENSSPUG00000018402 #22	ZPLD1 (ENSSPUG00000018398)
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Laterata	ANCESTRAL SPECIES		ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00770000120675	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231	ENSGT00940000158406 #35
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES		GABPA (ENSSMRG00000023092)	APP (ENSSMRG00000023091)	ADAMTS1 (ENSSMRG00000023089)	ADAMTS5 (ENSSMRG00000023088)	N6AMT1 (ENSSMRG00000023085)	LTN1 (ENSSMRG00000023084)	RWDD2B (ENSSMRG00000023083)	USP16 (ENSSMRG00000023082)	CCT8 (ENSSMRG00000023081)	ENSSMRG00000023080	BACH1 (ENSSMRG00000023078)	ENSSMRG00000023077	GRIK1 (ENSSMRG00000023075)	CLDN8 (ENSSMRG00000023073)	TIAM1 (ENSSMRG00000023072) #18	ENSSMRG00000023071 #22	SCAF4 (ENSSMRG00000023069) #23	HUNK (ENSSMRG00000023068) #24	ENSSMRG00000023067	MIS18A (ENSSMRG00000023066) #25	ENSSMRG00000023065	URB1 (ENSSMRG00000023064) #27	EVA1C (ENSSMRG00000023063) #28	CFAP298 (ENSSMRG00000023062) #29	SYNJ1 (ENSSMRG00000023061) #30	PAXBP1 (ENSSMRG00000023060) #31	C21orf62 (ENSSMRG00000023059) #32	OLIG2 (ENSSMRG00000023058) #33	OLIG1 (ENSSMRG00000023057)	ENSSMRG00000023056 #34	IL10RB (ENSSMRG00000023055)
Argentine black and white tegu	MODERN SPECIES	73	ORMDL2 (ENSSMRG00000005073)	KMT2D (ENSSMRG00000005092)	RHEBL1 (ENSSMRG00000005440)	DHH (ENSSMRG00000005456)	LMBR1L (ENSSMRG00000005473)	ENSSMRG00000005477	ENSSMRG00000005481	ENSSMRG00000005482	PRPH (ENSSMRG00000005483)	C1QL4 (ENSSMRG00000005513)	DNAJC22 (ENSSMRG00000005516)	SPATS2 (ENSSMRG00000005527)	ENSSMRG00000005532	KCNH3 (ENSSMRG00000005537)	MCRS1 (ENSSMRG00000005622)	ENSSMRG00000005634 #22	ITGA7 (ENSSMRG00000005635)	BLOC1S1 (ENSSMRG00000005648)	RDH5 (ENSSMRG00000005649)	CD63 (ENSSMRG00000005674)	ZNF207 (ENSSMRG00000005675)	C17orf75 (ENSSMRG00000005678)	RHBDL3 (ENSSMRG00000005691)	RHOT1 (ENSSMRG00000005714)	ENSSMRG00000005729	TEFM (ENSSMRG00000005734)	ENSSMRG00000005738	ENSSMRG00000005743	CRLF3 (ENSSMRG00000005752)	SUZ12 (ENSSMRG00000005840)	UTP6 (ENSSMRG00000005854)
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000002978	ADAMTS5 (ENSPMRG00000002986)	ENSPMRG00000002995	N6AMT1 (ENSPMRG00000003013)	LTN1 (ENSPMRG00000003160)	RWDD2B (ENSPMRG00000003498)	USP16 (ENSPMRG00000003505)	CCT8 (ENSPMRG00000003519)	MAP3K7CL (ENSPMRG00000003530)	BACH1 (ENSPMRG00000003539)	GRIK1 (ENSPMRG00000003621)	ENSPMRG00000003863	ENSPMRG00000003865	CLDN8 (ENSPMRG00000003869)	TIAM1 (ENSPMRG00000003876) #18	SOD1 (ENSPMRG00000003896) #22	ENSPMRG00000003911 #23	ENSPMRG00000003958 #23	ENSPMRG00000003977	HUNK (ENSPMRG00000003983) #24	MIS18A (ENSPMRG00000003990) #25	URB1 (ENSPMRG00000004133) #27	EVA1C (ENSPMRG00000004770) #28	CFAP298 (ENSPMRG00000004775) #29	SYNJ1 (ENSPMRG00000004826) #30	PAXBP1 (ENSPMRG00000005024) #31	C21orf62 (ENSPMRG00000005033) #32	ENSPMRG00000005037	OLIG2 (ENSPMRG00000018773) #33	OLIG1 (ENSPMRG00000018776)	ENSPMRG00000018779 #34
Toxicofera	ANCESTRAL SPECIES	9	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Lizard	MODERN SPECIES	2	ENSACAG00000044942	ENSACAG00000001341	LTN1 (ENSACAG00000001346)	RWDD2B (ENSACAG00000001560)	USP16 (ENSACAG00000001581)	CCT8 (ENSACAG00000001784)	ENSACAG00000041537	ENSACAG00000035443	ENSACAG00000001970	BACH1 (ENSACAG00000001974)	GRIK1 (ENSACAG00000002026)	ENSACAG00000021113	CLDN8 (ENSACAG00000002394)	ENSACAG00000040642	TIAM1 (ENSACAG00000022492) #18	SOD1 (ENSACAG00000002543) #22	ENSACAG00000002569	ENSACAG00000037328	HUNK (ENSACAG00000002743) #24	MIS18A (ENSACAG00000002814) #25	URB1 (ENSACAG00000002817) #27	ENSACAG00000002914	CFAP298 (ENSACAG00000002935) #29	SYNJ1 (ENSACAG00000003006) #30	PAXBP1 (ENSACAG00000003196) #31	C21orf62 (ENSACAG00000003249) #32	ENSACAG00000043349	ENSACAG00000034834	GALNT7 (ENSACAG00000005432)	HMGB2 (ENSACAG00000005480)	SAP30 (ENSACAG00000005497)
Elapidae	ANCESTRAL SPECIES	10	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00940000179662	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00510000049322 #34	ENSGT00940000158231
Elapidae_a	ANCESTRAL SPECIES	12	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923.c	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a.e #31	ENSGT00940000179662	ENSGT00390000000455.a.f #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00940000158231
Acanthophiinae	ANCESTRAL SPECIES	14	ENSGT00940000155799	ENSGT00530000063252.a.b	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000013073	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923.c	ENSGT00940000156253	ENSGT00940000159077.b	ENSGT00940000159077.a	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a.e #31	ENSGT00940000179662	ENSGT00390000000455.a.f #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33	ENSGT00940000162722	ENSGT00940000158231
Mainland tiger snake	MODERN SPECIES	7	APP (ENSNSUG00000016870)	ADAMTS1 (ENSNSUG00000016930)	ADAMTS5 (ENSNSUG00000016931)	ENSNSUG00000016936	N6AMT1 (ENSNSUG00000016938)	LTN1 (ENSNSUG00000016939)	RWDD2B (ENSNSUG00000016940)	USP16 (ENSNSUG00000016941)	CCT8 (ENSNSUG00000017077)	ENSNSUG00000017078	BACH1 (ENSNSUG00000017079)	GRIK1 (ENSNSUG00000017080)	ENSNSUG00000017194	CLDN8 (ENSNSUG00000017195)	TIAM1 (ENSNSUG00000017196) #18	SOD1 (ENSNSUG00000017198) #22	SCAF4 (ENSNSUG00000017200) #23	HUNK (ENSNSUG00000017202) #24	MIS18A (ENSNSUG00000017204) #25	ENSNSUG00000017205	URB1 (ENSNSUG00000017208) #27	ENSNSUG00000017209	CFAP298 (ENSNSUG00000017210) #29	ENSNSUG00000017211 #30	ENSNSUG00000017213 #30	ENSNSUG00000017214	PAXBP1 (ENSNSUG00000017215) #31	C21orf62 (ENSNSUG00000017228) #32	OLIG2 (ENSNSUG00000017230) #33	OLIG1 (ENSNSUG00000017232)	IL10RB (ENSNSUG00000017234)
Eastern brown snake	MODERN SPECIES	14	GABPA (ENSPTXG00000004277)	APP (ENSPTXG00000004270)	ADAMTS1 (ENSPTXG00000004265)	ADAMTS5 (ENSPTXG00000004252)	N6AMT1 (ENSPTXG00000004244)	LTN1 (ENSPTXG00000004239)	RWDD2B (ENSPTXG00000004237)	USP16 (ENSPTXG00000004235)	CCT8 (ENSPTXG00000004231)	ENSPTXG00000004229	BACH1 (ENSPTXG00000004226)	GRIK1 (ENSPTXG00000001508)	ENSPTXG00000001460	CLDN8 (ENSPTXG00000001458)	TIAM1 (ENSPTXG00000001394) #18	SOD1 (ENSPTXG00000001382) #22	SCAF4 (ENSPTXG00000001368) #23	HUNK (ENSPTXG00000001361) #24	MIS18A (ENSPTXG00000001357) #25	URB1 (ENSPTXG00000001054) #27	ENSPTXG00000001003	CFAP298 (ENSPTXG00000000999) #29	SYNJ1 (ENSPTXG00000000990) #30	PAXBP1 (ENSPTXG00000000976) #31	C21orf62 (ENSPTXG00000000965) #32	OLIG1 (ENSPTXG00000000964)	IL10RB (ENSPTXG00000000961)	ENSPTXG00000000954 #35	IFNGR2 (ENSPTXG00000000949) #36	TMEM50B (ENSPTXG00000000943) #37	DNAJC28 (ENSPTXG00000000940)
Blue-lipped sea krait	MODERN SPECIES	10089																SOD1 (ENSLLTG00000012582) #22	ENSLLTG00000012603
Indian cobra	MODERN SPECIES	4	APP (ENSNNAG00000013512)	ADAMTS1 (ENSNNAG00000013364)	ADAMTS5 (ENSNNAG00000012982)	N6AMT1 (ENSNNAG00000012931)	LTN1 (ENSNNAG00000011210)	RWDD2B (ENSNNAG00000011086)	USP16 (ENSNNAG00000010640)	CCT8 (ENSNNAG00000010462)	ENSNNAG00000010400	BACH1 (ENSNNAG00000010365)	GRIK1 (ENSNNAG00000008076)	ENSNNAG00000007937	CLDN8 (ENSNNAG00000007926)	ENSNNAG00000007757 #18	ENSNNAG00000007698 #18	SOD1 (ENSNNAG00000007551) #22	SCAF4 (ENSNNAG00000007109) #23	HUNK (ENSNNAG00000007029) #24	MIS18A (ENSNNAG00000007014) #25	URB1 (ENSNNAG00000006901) #27	ENSNNAG00000006764	CFAP298 (ENSNNAG00000006728) #29	SYNJ1 (ENSNNAG00000006686) #30	PAXBP1 (ENSNNAG00000006624) #31	C21orf62 (ENSNNAG00000006604) #32	OLIG2 (ENSNNAG00000006591) #33	OLIG1 (ENSNNAG00000006561)	ENSNNAG00000006546 #34	IL10RB (ENSNNAG00000006531)	ENSNNAG00000006517 #35	ENSNNAG00000006504 #36
Anura	ANCESTRAL SPECIES	105	ENSGT00530000063252.a.b	ENSGT00500000044986	ENSGT00940000156815	ENSGT00940000159090	ENSGT00390000016055	ENSGT00390000007224.b	ENSGT00940000156013	ENSGT00550000074783	ENSGT00940000164659	ENSGT00940000158923	ENSGT00940000156253	ENSGT00940000159077.c.b	ENSGT00940000159077.c.a	ENSGT00940000159077.d	ENSGT00940000156294 #18	ENSGT00940000155551 #22	ENSGT00530000063946.a #23	ENSGT00940000161070 #24	ENSGT00940000165963	ENSGT00940000154267.B #25	ENSGT01030000235126	ENSGT00390000014210 #27	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00390000000455.a #31	ENSGT00390000016499 #32	ENSGT00940000161651 #33
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	5	LTN1 (ENSLLEG00000007311)	RWDD2B (ENSLLEG00000007201)	USP16 (ENSLLEG00000007109)	CCT8 (ENSLLEG00000006843)	ENSLLEG00000006775	BACH1 (ENSLLEG00000006744)	GRIK1 (ENSLLEG00000006327)	ENSLLEG00000006237	ENSLLEG00000006219	ENSLLEG00000006207	ENSLLEG00000006190	TIAM1 (ENSLLEG00000005966) #18	ENSLLEG00000005869	ENSLLEG00000005846	ENSLLEG00000005826	ENSLLEG00000005799 #22	ENSLLEG00000016154	SCAF4 (ENSLLEG00000015866) #23	HUNK (ENSLLEG00000015657) #24	ENSLLEG00000015629	URB1 (ENSLLEG00000014983) #27	ENSLLEG00000014937	ENSLLEG00000014870	ENSLLEG00000014733	CFAP298 (ENSLLEG00000014680) #29	SYNJ1 (ENSLLEG00000014414) #30	PAXBP1 (ENSLLEG00000013832) #31	C21orf62 (ENSLLEG00000013774) #32	ENSLLEG00000013758	ENSLLEG00000013723	ENSLLEG00000013704
Leishan spiny toad	MODERN SPECIES	7	CYP1B1 (ENSLLEG00000010720)	ENSLLEG00000010652	ENSLLEG00000010633	ENSLLEG00000010437	ENSLLEG00000009494	ENSLLEG00000009415	CDC42EP3 (ENSLLEG00000030024)	ENSLLEG00000030015	NLRC4 (ENSLLEG00000029987)	FBXO30 (ENSLLEG00000029972)	ENSLLEG00000029957	ENSLLEG00000029947	HEATR1 (ENSLLEG00000028914)	ENSLLEG00000028789	ENSLLEG00000028781	ENSLLEG00000028767 #22	SLC8A1 (ENSLLEG00000028749)	ENSLLEG00000028730	ENSLLEG00000028712	ENSLLEG00000028702	ENSLLEG00000028698	ENSLLEG00000028681	MRPS5 (ENSLLEG00000028386)	ENSLLEG00000028326	ENSLLEG00000028316	MALL (ENSLLEG00000028291)	NPHP1 (ENSLLEG00000028143)	MTLN (ENSLLEG00000028123)	BUB1 (ENSLLEG00000027984)	ENSLLEG00000027481	ENSLLEG00000026665
Frog	MODERN SPECIES	2	rwdd2b (ENSXETG00000020254)	usp16 (ENSXETG00000020255)	cct8 (ENSXETG00000020262)	map3k7cl (ENSXETG00000020265)	bach1 (ENSXETG00000020266)	grik1 (ENSXETG00000011804)	ENSXETG00000043341	ENSXETG00000048993	cldn17.3 (ENSXETG00000041445)	ENSXETG00000048878	cldn17.1 (ENSXETG00000046719)	cldn8.4 (ENSXETG00000036538)	cldn8.1 (ENSXETG00000047698)	cldn8.3 (ENSXETG00000042240)	tiam1 (ENSXETG00000048708) #18	sod1 (ENSXETG00000047863) #22	scaf4 (ENSXETG00000007351) #23	hunk (ENSXETG00000007352)	mis18a (ENSXETG00000044783) #25	ENSXETG00000036213	urb1 (ENSXETG00000009895) #27	ENSXETG00000046960	eva1c (ENSXETG00000042750)	ENSXETG00000009898	ENSXETG00000047669	cfap298 (ENSXETG00000009902) #29	ENSXETG00000044911	synj1 (ENSXETG00000009899) #30	paxbp1 (ENSXETG00000009903) #31	c21orf62 (ENSXETG00000024840) #32	ENSXETG00000046309
Coelacanth	MODERN SPECIES	966				ATP1A1 (ENSLACG00000001454)	MAB21L3 (ENSLACG00000005381)	SLC22A15 (ENSLACG00000005854)	CASQ2 (ENSLACG00000007173)	VANGL1 (ENSLACG00000008020)	POGLUT1 (ENSLACG00000008517)	TIMMDC1 (ENSLACG00000008939)	GRIK1 (ENSLACG00000009256)	ENSLACG00000010878	cldn8.3 (ENSLACG00000011216)	ENSLACG00000011362	TIAM1 (ENSLACG00000011787) #18	SOD1 (ENSLACG00000013736) #22	SCAF4 (ENSLACG00000013913) #23
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000155551 #22
Neopterygii	ANCESTRAL SPECIES	152						ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000014210 #27	ENSGT01030000235126	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00530000063946.a.b #23	ENSGT00940000156294 #18	ENSGT00940000164824.A	ENSGT00940000164824.B	ENSGT00940000159077	ENSGT00940000156253	ENSGT00940000158923	ENSGT00940000164659	ENSGT00550000074783	ENSGT00940000156013	ENSGT00390000007224.b	ENSGT00390000016055	ENSGT00940000155947	ENSGT00390000017040	ENSGT00390000000455.a #31
Spotted gar	MODERN SPECIES	669	FNDC3A (ENSLOCG00000009316)	ENSLOCG00000009308	zgc:153184 (ENSLOCG00000009297)	ENSLOCG00000009289	ENSLOCG00000009280	guca1c (ENSLOCG00000009269)	ENSLOCG00000009260	SLC46A3 (ENSLOCG00000009246)	synj1 (ENSLOCG00000009230) #30	cfap298 (ENSLOCG00000009219) #29	ENSLOCG00000009204	urb1 (ENSLOCG00000009190) #27	ENSLOCG00000009184	HUNK (ENSLOCG00000009175) #24	SCAF4 (ENSLOCG00000009162) #23	sod1 (ENSLOCG00000009152) #22	TIAM1 (ENSLOCG00000009135) #18	ENSLOCG00000018053	cldn8.2 (ENSLOCG00000009128)	CLDN8 (ENSLOCG00000018051)	CLDN8 (ENSLOCG00000009119)	ENSLOCG00000009105	GRIK1 (ENSLOCG00000009083)	bach1b (ENSLOCG00000009077)	ENSLOCG00000009068	cct8 (ENSLOCG00000009042)	usp16 (ENSLOCG00000009029)	rwdd2b (ENSLOCG00000009019)	LTN1 (ENSLOCG00000008998)	cadm2a (ENSLOCG00000008983)	GBE1 (ENSLOCG00000008974)
Osteoglossocephalai	ANCESTRAL SPECIES	66	ENSGT01060000248594.e.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.d	ENSGT00940000163671.a.a.a.a	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT01030000235126	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294 #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b	ENSGT00390000000455.a #31	ENSGT00940000155349.d	ENSGT00950000183026.B.c.b	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b	ENSGT00730000111188	ENSGT00390000017209	ENSGT00390000013335
Clupeocephala	ANCESTRAL SPECIES	32	ENSGT01060000248594.e.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b	ENSGT00390000000455.a #31	ENSGT00940000155349.d	ENSGT00950000183026.B.c.b	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a	ENSGT00940000160428.b.a.a	ENSGT01100000263624	ENSGT00970000197619
Euteleosteomorpha	ANCESTRAL SPECIES	37	ENSGT00390000011708.a	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT01000000217247	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b	ENSGT00390000000455.a #31	ENSGT00940000155349.d	ENSGT00950000183026.B.c.b	ENSGT00390000000223	ENSGT01030000234614.B.a.a.a	ENSGT00940000160428.b.a.a	ENSGT01100000263624	ENSGT00970000197619
Acanthomorphata	ANCESTRAL SPECIES	10	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b
Cod	MODERN SPECIES	20	ppdpfb (ENSGMOG00000015130)	slc25a14 (ENSGMOG00000001998)	ENSGMOG00000032461	ENSGMOG00000002033	pou4f4 (ENSGMOG00000026057)	klf5l (ENSGMOG00000034251)	klf8 (ENSGMOG00000033166)	ENSGMOG00000014836	ENSGMOG00000014852 #30	cfap298 (ENSGMOG00000014924) #29	ENSGMOG00000014948	ENSGMOG00000014988	MIS18A (ENSGMOG00000015013) #25	ENSGMOG00000015028	SCAF4 (ENSGMOG00000015188) #23	sod1 (ENSGMOG00000015265) #22	TIAM1 (ENSGMOG00000015633) #18	ENSGMOG00000015723	ENSGMOG00000023501	ENSGMOG00000028766	ENSGMOG00000015765	RAB38 (ENSGMOG00000015772)	grm5a (ENSGMOG00000015781)	TYR (ENSGMOG00000015820)	ENSGMOG00000015828	ENSGMOG00000015858	mtnr1bb (ENSGMOG00000030438)	hspb1 (ENSGMOG00000035191)	ENSGMOG00000012369	ENSGMOG00000036814	ENSGMOG00000012357
Euacanthomorphacea	ANCESTRAL SPECIES	20	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Pinecone sodierfish	MODERN SPECIES	5	zgc:64002 (ENSMMDG00005012714)	frem2a (ENSMMDG00005012727)	trim47 (ENSMMDG00005012746)	trim3b (ENSMMDG00005012766)	fhdc3 (ENSMMDG00005014853)	arfip2b (ENSMMDG00005014859)	ENSMMDG00005014878	SLC46A3 (ENSMMDG00005014891)	synj1 (ENSMMDG00005014924) #30	cfap298 (ENSMMDG00005014959) #29	ENSMMDG00005014961	haus1 (ENSMMDG00005014963)	MIS18A (ENSMMDG00005014964) #25	ENSMMDG00005014968	SCAF4 (ENSMMDG00005015115) #23	sod1 (ENSMMDG00005005236) #22	ENSMMDG00005005238 #18	TIAM1 (ENSMMDG00005005241) #18	GRIK1 (ENSMMDG00005005253)	ENSMMDG00005005411	ENSMMDG00005005412	RAB38 (ENSMMDG00005005413)	grm5a (ENSMMDG00005005421)	TYR (ENSMMDG00005005443)	CHORDC1 (ENSMMDG00005006169)	ENSMMDG00005006172	ENSMMDG00005006174	mtnr1bb (ENSMMDG00005006176)	timm10b (ENSMMDG00005006178)	ILK (ENSMMDG00005006184)	smpd1 (ENSMMDG00005006220)
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000163305.a.a	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Tiger tail seahorse	MODERN SPECIES	509	aldocb (ENSHCOG00000000228)	ENSHCOG00000007169	cct8 (ENSHCOG00000007145)	ENSHCOG00000007119	tmigd1 (ENSHCOG00000007113)	ENSHCOG00000007103	ENSHCOG00000007089	slc25a1a (ENSHCOG00000007081)	ENSHCOG00000007060	nle1 (ENSHCOG00000007051)	INPP5K (ENSHCOG00000006985)	PITPNA (ENSHCOG00000006966)	pdlim4 (ENSHCOG00000006944)	ENSHCOG00000006930	ENSHCOG00000006849 #23	sod1 (ENSHCOG00000006698) #22	TIAM1 (ENSHCOG00000006680) #18	GRIK1 (ENSHCOG00000006671)	ENSHCOG00000006641	ENSHCOG00000006627	RAB38 (ENSHCOG00000006618)	grm5a (ENSHCOG00000006609)	TYR (ENSHCOG00000006539)	CHORDC1 (ENSHCOG00000005946)	ENSHCOG00000005927	ENSHCOG00000005918	mtnr1bb (ENSHCOG00000000188)	ILK (ENSHCOG00000005895)	ENSHCOG00000005883	ENSHCOG00000000187	ENSHCOG00000005855
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
NAME_4	ANCESTRAL SPECIES	157						ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Sheepshead minnow	MODERN SPECIES	311							ENSCVAG00000019171	SLC46A3 (ENSCVAG00000019184)	synj1 (ENSCVAG00000019250) #30	cfap298 (ENSCVAG00000019278) #29	EVA1C (ENSCVAG00000019286) #28	haus1 (ENSCVAG00000019298)	MIS18A (ENSCVAG00000019313) #25	ENSCVAG00000019370	ENSCVAG00000019389	sod1 (ENSCVAG00000019398) #22	TIAM1 (ENSCVAG00000019429) #18	GRIK1 (ENSCVAG00000019578)	ENSCVAG00000019590	ENSCVAG00000019604	RAB38 (ENSCVAG00000019612)	grm5a (ENSCVAG00000019652)	TYR (ENSCVAG00000019658)	CHORDC1 (ENSCVAG00000019696)	FAT3 (ENSCVAG00000020567)	mtnr1bb (ENSCVAG00000020604)	ILK (ENSCVAG00000020651)	smpd1 (ENSCVAG00000020667)	tpte (ENSCVAG00000000530)	fgl1b (ENSCVAG00000020728)	ENSCVAG00000020766
Mummichog	MODERN SPECIES	259						ENSFHEG00000017533	ENSFHEG00000017607	ENSFHEG00000017650	synj1 (ENSFHEG00000017689) #30	cfap298 (ENSFHEG00000017720) #29	ENSFHEG00000017733	haus1 (ENSFHEG00000017759)	ENSFHEG00000017772 #25	ENSFHEG00000017856	SCAF4 (ENSFHEG00000017866) #23	sod1 (ENSFHEG00000017888) #22	TIAM1 (ENSFHEG00000017958) #18	GRIK1 (ENSFHEG00000018016)	ENSFHEG00000018031	ENSFHEG00000018040	RAB38 (ENSFHEG00000018056)	grm5a (ENSFHEG00000018115)	TYR (ENSFHEG00000018141)	CHORDC1 (ENSFHEG00000018182)	FAT3 (ENSFHEG00000018577)	ENSFHEG00000018609
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
NAME_6	ANCESTRAL SPECIES	1	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	408															ENSPLAG00000001972 #23	sod1 (ENSPLAG00000001951) #22	TIAM1 (ENSPLAG00000001939) #18	GRIK1 (ENSPLAG00000001899)	ENSPLAG00000001886	ENSPLAG00000001877	RAB38 (ENSPLAG00000001865)	grm5a (ENSPLAG00000001857)	TYR (ENSPLAG00000001788)	CHORDC1 (ENSPLAG00000001560)	FAT3 (ENSPLAG00000001489)
Sailfin molly	MODERN SPECIES	1800								ENSPLAG00000017578	synj1 (ENSPLAG00000017559) #30	cfap298 (ENSPLAG00000017532) #29	EVA1C (ENSPLAG00000017504) #28	haus1 (ENSPLAG00000017489)	ENSPLAG00000017478 #25	ENSPLAG00000017457	ENSPLAG00000017417	sod1 (ENSPLAG00000017383) #22
Amazon molly	MODERN SPECIES	255	ufm1 (ENSPFOG00000016427)	frem2a (ENSPFOG00000016441)	trim47 (ENSPFOG00000016612)	trim3b (ENSPFOG00000016635)	fhdc3 (ENSPFOG00000016655)	arfip2b (ENSPFOG00000016677)	ENSPFOG00000016709	ENSPFOG00000016869	synj1 (ENSPFOG00000016886) #30	cfap298 (ENSPFOG00000017012) #29	EVA1C (ENSPFOG00000017032) #28	haus1 (ENSPFOG00000017053)	MIS18A (ENSPFOG00000017081) #25	ENSPFOG00000017088	ENSPFOG00000017108	sod1 (ENSPFOG00000017181) #22	SCAF4 (ENSPFOG00000017156) #23	ENSPFOG00000024579 #18	TIAM1 (ENSPFOG00000017198) #18	GRIK1 (ENSPFOG00000017270)	ENSPFOG00000017316	ENSPFOG00000017325	RAB38 (ENSPFOG00000017333)	grm5a (ENSPFOG00000017347)	TYR (ENSPFOG00000017399)	CHORDC1 (ENSPFOG00000017416)	FAT3 (ENSPFOG00000017462)	mtnr1bb (ENSPFOG00000017677)	ENSPFOG00000023065	timm10b (ENSPFOG00000017688)	ILK (ENSPFOG00000017696)
Guppy	MODERN SPECIES	444	frem2a (ENSPREG00000012113)	trim47 (ENSPREG00000012194)	trim3b (ENSPREG00000012222)	fhdc3 (ENSPREG00000012297)	arfip2b (ENSPREG00000012313)	ENSPREG00000012333	ENSPREG00000012376	synj1 (ENSPREG00000012412) #30	cfap298 (ENSPREG00000012558) #29	ENSPREG00000012581	ENSPREG00000012595	haus1 (ENSPREG00000012623)	MIS18A (ENSPREG00000012642) #25	HUNK (ENSPREG00000012661) #24	ENSPREG00000012680	sod1 (ENSPREG00000012712) #22	TIAM1 (ENSPREG00000012757) #18	GRIK1 (ENSPREG00000012879)	ENSPREG00000012926	ENSPREG00000012938	RAB38 (ENSPREG00000012970)	grm5a (ENSPREG00000012987)	TYR (ENSPREG00000013054)	CHORDC1 (ENSPREG00000013071)	FAT3 (ENSPREG00000013333)	mtnr1bb (ENSPREG00000014458)	timm10b (ENSPREG00000014473)	ILK (ENSPREG00000014490)	smpd1 (ENSPREG00000014526)	tpte (ENSPREG00000014552)	fgl1b (ENSPREG00000014606)
Platyfish	MODERN SPECIES	2	ufm1 (ENSXMAG00000022172)	frem2a (ENSXMAG00000008693)	trim47 (ENSXMAG00000017475)	trim3b (ENSXMAG00000017483)	fhdc3 (ENSXMAG00000017499)	arfip2b (ENSXMAG00000023652)	ENSXMAG00000017516	SLC46A3 (ENSXMAG00000017521)	synj1 (ENSXMAG00000017524) #30	cfap298 (ENSXMAG00000017571) #29	EVA1C (ENSXMAG00000017584) #28	haus1 (ENSXMAG00000017590)	MIS18A (ENSXMAG00000017593) #25	ENSXMAG00000017596	ENSXMAG00000003256	sod1 (ENSXMAG00000017597) #22	TIAM1 (ENSXMAG00000017609) #18	ENSXMAG00000017630	ENSXMAG00000020946	ENSXMAG00000026281	RAB38 (ENSXMAG00000017670)	grm5a (ENSXMAG00000017676)	TYR (ENSXMAG00000017698)	CHORDC1 (ENSXMAG00000017707)	FAT3 (ENSXMAG00000017730)	mtnr1bb (ENSXMAG00000017758)	timm10b (ENSXMAG00000029572)	ILK (ENSXMAG00000017763)	smpd1 (ENSXMAG00000017775)	tpte (ENSXMAG00000017783)	fgl1b (ENSXMAG00000017825)
Aplocheiloidei	ANCESTRAL SPECIES	23	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Mangrove rivulus	MODERN SPECIES	42	ufm1 (ENSKMAG00000005047)	frem2a (ENSKMAG00000004950)	trim47 (ENSKMAG00000004913)	trim3b (ENSKMAG00000004757)	fhdc3 (ENSKMAG00000004699)	arfip2b (ENSKMAG00000004649)	ENSKMAG00000004599	SLC46A3 (ENSKMAG00000004574)	synj1 (ENSKMAG00000004221) #30	cfap298 (ENSKMAG00000004180) #29	ENSKMAG00000004159	haus1 (ENSKMAG00000004136)	MIS18A (ENSKMAG00000004092) #25	ENSKMAG00000004056	ENSKMAG00000004031	sod1 (ENSKMAG00000003916) #22	TIAM1 (ENSKMAG00000003772) #18	GRIK1 (ENSKMAG00000003709)	ENSKMAG00000003694	ENSKMAG00000003678	RAB38 (ENSKMAG00000003673)	grm5a (ENSKMAG00000003606)	TYR (ENSKMAG00000003590)	CHORDC1 (ENSKMAG00000003574)	FAT3 (ENSKMAG00000001877)	mtnr1bb (ENSKMAG00000001582)	timm10b (ENSKMAG00000001566)	ILK (ENSKMAG00000001513)	smpd1 (ENSKMAG00000001498)	tpte (ENSKMAG00000001424)	fgl1b (ENSKMAG00000001388)
Turquoise killifish	MODERN SPECIES	1620	frem2a (ENSNFUG00015016544)	TRIM47 (ENSNFUG00015016814)	trim3b (ENSNFUG00015016880)	fhdc3 (ENSNFUG00015017507)	arfip2b (ENSNFUG00015017522)	ENSNFUG00015017588	SLC46A3 (ENSNFUG00015017697)	synj1 (ENSNFUG00015017738) #30	ENSNFUG00015018012	C10H21ORF59 (ENSNFUG00015018014) #29	EVA1C (ENSNFUG00015018018) #28	haus1 (ENSNFUG00015018023)	MIS18A (ENSNFUG00015018024) #25	HUNK (ENSNFUG00015018028)	SCAF4 (ENSNFUG00015018031) #23	SOD1 (ENSNFUG00015018034) #22	TIAM1 (ENSNFUG00015018081) #18	GRIK1A (ENSNFUG00015018440)	ENSNFUG00015018687	ENSNFUG00015018690	RAB38 (ENSNFUG00015018696)	ENSNFUG00015018699	GRM5 (ENSNFUG00015018769)	TYR (ENSNFUG00015020863)	CHORDC1 (ENSNFUG00015020991)	FAT3 (ENSNFUG00015021322)	mtnr1bb (ENSNFUG00015021649)	ENSNFUG00015021653	TIMM10B (ENSNFUG00015021658)	ILK (ENSNFUG00015021662)	SMPD1 (ENSNFUG00015021675)
Oryzias	ANCESTRAL SPECIES	14	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Javanese ricefish	MODERN SPECIES	5	trpc4a (ENSOJAG00000013413)	ufm1 (ENSOJAG00000013386)	trim47 (ENSOJAG00000012685)	trim3b (ENSOJAG00000012324)	fhdc3 (ENSOJAG00000012232)	arfip2b (ENSOJAG00000012137)	ENSOJAG00000011645	ENSOJAG00000011607	synj1 (ENSOJAG00000011457) #30	cfap298 (ENSOJAG00000011440) #29	ENSOJAG00000011415	haus1 (ENSOJAG00000011390)	ENSOJAG00000011368 #25	ENSOJAG00000011354	SCAF4 (ENSOJAG00000011335) #23	sod1 (ENSOJAG00000011305) #22	TIAM1 (ENSOJAG00000011133) #18	ENSOJAG00000010567	ENSOJAG00000010492	ENSOJAG00000010484	RAB38 (ENSOJAG00000010475)	grm5a (ENSOJAG00000008937)	TYR (ENSOJAG00000008784)	CHORDC1 (ENSOJAG00000008723)	FAT3 (ENSOJAG00000006679)	mtnr1bb (ENSOJAG00000006476)	timm10b (ENSOJAG00000006239)	ILK (ENSOJAG00000005987)	smpd1 (ENSOJAG00000017152)	tpte (ENSOJAG00000016964)	fgl1b (ENSOJAG00000016930)
Indian medaka	MODERN SPECIES	4	ufm1 (ENSOMEG00000013570)	frem2a (ENSOMEG00000013724)	trim47 (ENSOMEG00000013806)	trim3b (ENSOMEG00000013961)	fhdc3 (ENSOMEG00000013998)	arfip2b (ENSOMEG00000014035)	ENSOMEG00000014091	SLC46A3 (ENSOMEG00000014125)	synj1 (ENSOMEG00000014322) #30	cfap298 (ENSOMEG00000014367) #29	EVA1C (ENSOMEG00000014384) #28	haus1 (ENSOMEG00000014399)	MIS18A (ENSOMEG00000014412) #25	ENSOMEG00000014437 #24	SCAF4 (ENSOMEG00000014482) #23	sod1 (ENSOMEG00000014501) #22	TIAM1 (ENSOMEG00000014598) #18	ENSOMEG00000014807	ENSOMEG00000014853	bach1b (ENSOMEG00000014875)	RAB38 (ENSOMEG00000014889)	grm5a (ENSOMEG00000014934)	TYR (ENSOMEG00000014949)	CHORDC1 (ENSOMEG00000015009)	ENSOMEG00000015029	ENSOMEG00000015057	mtnr1bb (ENSOMEG00000015399)	timm10b (ENSOMEG00000015515)	ILK (ENSOMEG00000015564)	smpd1 (ENSOMEG00000015584)	tpte (ENSOMEG00000015647)
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Chinese medaka	MODERN SPECIES	303									synj1 (ENSOSIG00000006220) #30	cfap298 (ENSOSIG00000008302) #29	EVA1C (ENSOSIG00000008304) #28	haus1 (ENSOSIG00000008306)	MIS18A (ENSOSIG00000008310) #25	ENSOSIG00000008313	SCAF4 (ENSOSIG00000008319) #23	sod1 (ENSOSIG00000008321) #22	TIAM1 (ENSOSIG00000008329) #18	ENSOSIG00000008363	ENSOSIG00000011589	ENSOSIG00000011594	ENSOSIG00000011591	RAB38 (ENSOSIG00000011595)	ENSOSIG00000011598	FAT3 (ENSOSIG00000011626)	mtnr1bb (ENSOSIG00000011870)	ENSOSIG00000011871	ILK (ENSOSIG00000011872)	smpd1 (ENSOSIG00000011876)	tpte (ENSOSIG00000011882)	fgl1b (ENSOSIG00000011892)	ENSOSIG00000011896
Japanese Medaka HdrR	MODERN SPECIES	5	ufm1 (ENSORLG00000027633)	frem2a (ENSORLG00000004105)	trim47 (ENSORLG00000004134)	trim3b (ENSORLG00000004188)	fhdc3 (ENSORLG00000026976)	arfip2b (ENSORLG00000004228)	ENSORLG00000004252	ENSORLG00000025784	SLC46A3 (ENSORLG00000004288)	synj1 (ENSORLG00000004320) #30	cfap298 (ENSORLG00000004334) #29	ENSORLG00000004341	haus1 (ENSORLG00000004354)	SCAF4 (ENSORLG00000004384) #23	ENSORLG00000004367	sod1 (ENSORLG00000026842) #22	TIAM1 (ENSORLG00000004421) #18	ENSORLG00000004443	ENSORLG00000024482	bach1b (ENSORLG00000004475)	RAB38 (ENSORLG00000004499)	grm5a (ENSORLG00000004517)	TYR (ENSORLG00000004539)	CHORDC1 (ENSORLG00000028524)	ENSORLG00000004589	ENSORLG00000029601	mtnr1bb (ENSORLG00000004594)	timm10b (ENSORLG00000028750)	ENSORLG00000004628	smpd1 (ENSORLG00000004633)	tpte (ENSORLG00000004658)
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	21	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Burton s mouthbrooder	MODERN SPECIES	362	frem2a (ENSHBUG00000007417)	trim47 (ENSHBUG00000007453)	trim3b (ENSHBUG00000007544)	fhdc3 (ENSHBUG00000007574)	arfip2b (ENSHBUG00000007588)	ENSHBUG00000007709	ENSHBUG00000007728	SLC46A3 (ENSHBUG00000007735)	synj1 (ENSHBUG00000007774) #30	cfap298 (ENSHBUG00000007824) #29	EVA1C (ENSHBUG00000007845) #28	haus1 (ENSHBUG00000007861)	ENSHBUG00000007883 #25	ENSHBUG00000007891	SCAF4 (ENSHBUG00000007920) #23	sod1 (ENSHBUG00000007955) #22	TIAM1 (ENSHBUG00000008082) #18	GRIK1 (ENSHBUG00000008242)	ENSHBUG00000008265	ENSHBUG00000008285	RAB38 (ENSHBUG00000008295)	grm5a (ENSHBUG00000008362)	TYR (ENSHBUG00000008370)	CHORDC1 (ENSHBUG00000008438)	FAT3 (ENSHBUG00000009071)	mtnr1bb (ENSHBUG00000009139)	timm10b (ENSHBUG00000009158)	ILK (ENSHBUG00000009196)	smpd1 (ENSHBUG00000009213)	tpte (ENSHBUG00000009257)	fgl1b (ENSHBUG00000009226)
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT01010000222551	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
P. nyererei	MODERN SPECIES	475	frem2a (ENSPNYG00000022820)	trim47 (ENSPNYG00000022836)	trim3b (ENSPNYG00000022848)	fhdc3 (ENSPNYG00000022871)	arfip2b (ENSPNYG00000022887)	ENSPNYG00000022909	ENSPNYG00000022927	SLC46A3 (ENSPNYG00000022930)	synj1 (ENSPNYG00000022989) #30	cfap298 (ENSPNYG00000023061) #29	EVA1C (ENSPNYG00000023075) #28	haus1 (ENSPNYG00000023082)	ENSPNYG00000023087 #25	ENSPNYG00000023091 #24	ENSPNYG00000023102	sod1 (ENSPNYG00000023128) #22	TIAM1 (ENSPNYG00000023139) #18	GRIK1 (ENSPNYG00000023151)	ENSPNYG00000023155	ENSPNYG00000023157	RAB38 (ENSPNYG00000023169)	grm5a (ENSPNYG00000023179)	TYR (ENSPNYG00000023229)	CHORDC1 (ENSPNYG00000023341)	FAT3 (ENSPNYG00000023374)	mtnr1bb (ENSPNYG00000023447)	timm10b (ENSPNYG00000023448)	ILK (ENSPNYG00000023451)	smpd1 (ENSPNYG00000023456)	tpte (ENSPNYG00000000811)	fgl1b (ENSPNYG00000000862)
Haplochromini_B	ANCESTRAL SPECIES	16	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.h	ENSGT00950000183096.a.a.c.b.e.g	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Eastern happy	MODERN SPECIES	1	frem2a (ENSACLG00000002551)	trim47 (ENSACLG00000002534)	ENSACLG00000002513	fhdc3 (ENSACLG00000002462)	arfip2b (ENSACLG00000002423)	ENSACLG00000002339	ENSACLG00000002326	SLC46A3 (ENSACLG00000002321)	synj1 (ENSACLG00000002255) #30	cfap298 (ENSACLG00000002217) #29	EVA1C (ENSACLG00000002197) #28	haus1 (ENSACLG00000002130)	MIS18A (ENSACLG00000002084) #25	ENSACLG00000002075	ENSACLG00000002010	sod1 (ENSACLG00000001984) #22	TIAM1 (ENSACLG00000001870) #18	GRIK1 (ENSACLG00000001838)	ENSACLG00000001834	ENSACLG00000001797	RAB38 (ENSACLG00000001792)	ENSACLG00000001773	grm5a (ENSACLG00000001674)	ENSACLG00000001661	TYR (ENSACLG00000000404)	CHORDC1 (ENSACLG00000000338)	FAT3 (ENSACLG00000000202)	mtnr1bb (ENSACLG00000023505)	ENSACLG00000023497	timm10b (ENSACLG00000023397)	ILK (ENSACLG00000023324)
Zebra mbuna	MODERN SPECIES	1092	frem2a (ENSMZEG00005024378)	trim47 (ENSMZEG00005024377)	trim3b (ENSMZEG00005024372)	fhdc3 (ENSMZEG00005024368)	arfip2b (ENSMZEG00005024365)	ENSMZEG00005024363	ENSMZEG00005024362	SLC46A3 (ENSMZEG00005024361)	synj1 (ENSMZEG00005024358) #30	cfap298 (ENSMZEG00005024356) #29	EVA1C (ENSMZEG00005024355) #28	haus1 (ENSMZEG00005024354)	ENSMZEG00005024353 #25	ENSMZEG00005024352	SCAF4 (ENSMZEG00005024349) #23	sod1 (ENSMZEG00005024348) #22	TIAM1 (ENSMZEG00005024346) #18	GRIK1 (ENSMZEG00005024344)	ENSMZEG00005024343	ENSMZEG00005024341	RAB38 (ENSMZEG00005024337)	ENSMZEG00005024335	grm5a (ENSMZEG00005024331)	TYR (ENSMZEG00005019566)	CHORDC1 (ENSMZEG00005019529)	FAT3 (ENSMZEG00005019488)	mtnr1bb (ENSMZEG00005019438)	timm10b (ENSMZEG00005019433)	ILK (ENSMZEG00005019426)	smpd1 (ENSMZEG00005019422)	tpte (ENSMZEG00005019409)
Lyretail cichlid	MODERN SPECIES	358	ufm1 (ENSNBRG00000012425)	frem2a (ENSNBRG00000012354)	trim47 (ENSNBRG00000012317)	trim3b (ENSNBRG00000012286)	arfip2b (ENSNBRG00000012259)	ENSNBRG00000012206	SLC46A3 (ENSNBRG00000012183)	SLC46A3 (ENSNBRG00000012173)	synj1 (ENSNBRG00000011936) #30	cfap298 (ENSNBRG00000011889) #29	ENSNBRG00000011875	haus1 (ENSNBRG00000011850)	ENSNBRG00000011789	ENSNBRG00000011760 #24	ENSNBRG00000011747 #23	sod1 (ENSNBRG00000011721) #22	TIAM1 (ENSNBRG00000011644) #18	GRIK1 (ENSNBRG00000011122)	ENSNBRG00000010999	ENSNBRG00000010968	RAB38 (ENSNBRG00000010910)	grm5a (ENSNBRG00000010832)	TYR (ENSNBRG00000010211)	CHORDC1 (ENSNBRG00000010122)	ENSNBRG00000010116	ENSNBRG00000010064	mtnr1bb (ENSNBRG00000010046)	ENSNBRG00000010029	timm10b (ENSNBRG00000010020)	ILK (ENSNBRG00000010001)	smpd1 (ENSNBRG00000009981)
Nile tilapia	MODERN SPECIES	1	trim3b (ENSONIG00000004653)	fhdc3 (ENSONIG00000037868)	arfip2b (ENSONIG00000004657)	ENSONIG00000028984	ENSONIG00000004660	ENSONIG00000004661	ENSONIG00000028080	SLC46A3 (ENSONIG00000004662)	synj1 (ENSONIG00000004667) #30	cfap298 (ENSONIG00000004673) #29	EVA1C (ENSONIG00000004674) #28	haus1 (ENSONIG00000004677)	ENSONIG00000004682 #25	hunk (ENSONIG00000004685)	scaf4 (ENSONIG00000004687) #23	sod1 (ENSONIG00000035439) #22	TIAM1 (ENSONIG00000004693) #18	GRIK1 (ENSONIG00000004698)	ENSONIG00000032687	ENSONIG00000032253	RAB38 (ENSONIG00000004710)	grm5a (ENSONIG00000004711)	TYR (ENSONIG00000004725)	CHORDC1 (ENSONIG00000038291)	FAT3 (ENSONIG00000004737)	mtnr1bb (ENSONIG00000004746)	timm10b (ENSONIG00000030103)	ILK (ENSONIG00000004748)	smpd1 (ENSONIG00000004755)	tpte (ENSONIG00000004760)	fgl1b (ENSONIG00000004763)
Midas cichlid	MODERN SPECIES	1001	trim47 (ENSACIG00000008647)	trim3b (ENSACIG00000008678)	arfip2b (ENSACIG00000008710)	ENSACIG00000008731	ENSACIG00000008803	SLC46A3 (ENSACIG00000008816)	synj1 (ENSACIG00000008857) #30	cfap298 (ENSACIG00000009160) #29	EVA1C (ENSACIG00000009192) #28	haus1 (ENSACIG00000009282)	MIS18A (ENSACIG00000009324) #25	ENSACIG00000009337	ENSACIG00000009356	ENSACIG00000009376	ENSACIG00000009381 #23	sod1 (ENSACIG00000009399) #22	TIAM1 (ENSACIG00000009421) #18	GRIK1 (ENSACIG00000009476)	ENSACIG00000009527	bach1b (ENSACIG00000009549)	RAB38 (ENSACIG00000009619)	grm5a (ENSACIG00000009662)	TYR (ENSACIG00000009762)	CHORDC1 (ENSACIG00000010396)	FAT3 (ENSACIG00000010484)	mtnr1bb (ENSACIG00000011361)	ENSACIG00000011950	ENSACIG00000011972	ILK (ENSACIG00000011984)	smpd1 (ENSACIG00000012016)	tpte (ENSACIG00000012077)
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Clown anemonefish	MODERN SPECIES	1527					fhdc3 (ENSAOCG00000009397)	arfip2b (ENSAOCG00000009437)	ENSAOCG00000009560	SLC46A3 (ENSAOCG00000009592)	synj1 (ENSAOCG00000009835) #30	cfap298 (ENSAOCG00000009897) #29	EVA1C (ENSAOCG00000009913) #28	haus1 (ENSAOCG00000009956)	ENSAOCG00000002794 #25	ENSAOCG00000010011	SCAF4 (ENSAOCG00000000615) #23	sod1 (ENSAOCG00000010056) #22	TIAM1 (ENSAOCG00000010147) #18	ENSAOCG00000010207	ENSAOCG00000010217	ENSAOCG00000010229	RAB38 (ENSAOCG00000010234)
Orange clownfish	MODERN SPECIES	6	ufm1 (ENSAPEG00000020655)	frem2a (ENSAPEG00000020681)	trim47 (ENSAPEG00000020743)	trim3b (ENSAPEG00000020774)	fhdc3 (ENSAPEG00000020819)	arfip2b (ENSAPEG00000020867)	ENSAPEG00000020918	SLC46A3 (ENSAPEG00000020992)	synj1 (ENSAPEG00000021010) #30	cfap298 (ENSAPEG00000021084) #29	EVA1C (ENSAPEG00000021107) #28	haus1 (ENSAPEG00000021126)	MIS18A (ENSAPEG00000021189) #25	ENSAPEG00000021205	SCAF4 (ENSAPEG00000021229) #23	sod1 (ENSAPEG00000021247) #22	TIAM1 (ENSAPEG00000021285) #18	ENSAPEG00000021418	ENSAPEG00000021474	ENSAPEG00000021494	RAB38 (ENSAPEG00000021498)	grm5a (ENSAPEG00000021506)	TYR (ENSAPEG00000021548)	CHORDC1 (ENSAPEG00000021564)	FAT3 (ENSAPEG00000021716)	mtnr1bb (ENSAPEG00000022365)	timm10b (ENSAPEG00000022383)	ILK (ENSAPEG00000022388)	smpd1 (ENSAPEG00000022403)	tpte (ENSAPEG00000022412)	fgl1b (ENSAPEG00000022440)
Spiny chromis	MODERN SPECIES	28	ufm1 (ENSAPOG00000002384)	frem2a (ENSAPOG00000002426)	trim47 (ENSAPOG00000002455)	trim3b (ENSAPOG00000002558)	fhdc3 (ENSAPOG00000002607)	arfip2b (ENSAPOG00000002627)	ENSAPOG00000002706	SLC46A3 (ENSAPOG00000002721)	synj1 (ENSAPOG00000002809) #30	cfap298 (ENSAPOG00000002854) #29	EVA1C (ENSAPOG00000002866) #28	haus1 (ENSAPOG00000002882)	ENSAPOG00000002914 #25	ENSAPOG00000002926	SCAF4 (ENSAPOG00000002946) #23	sod1 (ENSAPOG00000002973) #22	TIAM1 (ENSAPOG00000003074) #18	ENSAPOG00000003168	ENSAPOG00000003192	ENSAPOG00000003209	RAB38 (ENSAPOG00000001139)	grm5a (ENSAPOG00000003294)	TYR (ENSAPOG00000003332)	CHORDC1 (ENSAPOG00000003371)	FAT3 (ENSAPOG00000004659)	mtnr1bb (ENSAPOG00000004918)	timm10b (ENSAPOG00000004934)	ILK (ENSAPOG00000004972)	smpd1 (ENSAPOG00000004987)	tpte (ENSAPOG00000005046)	fgl1b (ENSAPOG00000005088)
Bicolor damselfish	MODERN SPECIES	345							ENSSPAG00000006924	ENSSPAG00000006916	synj1 (ENSSPAG00000006812) #30	cfap298 (ENSSPAG00000006769) #29	EVA1C (ENSSPAG00000006731) #28	haus1 (ENSSPAG00000006702)	MIS18A (ENSSPAG00000006691) #25	ENSSPAG00000006674	ENSSPAG00000006625	sod1 (ENSSPAG00000006608) #22	TIAM1 (ENSSPAG00000006482) #18	GRIK1 (ENSSPAG00000006416)	ENSSPAG00000006399	ENSSPAG00000006389	RAB38 (ENSSPAG00000006382)	grm5a (ENSSPAG00000006339)	TYR (ENSSPAG00000004856)	CHORDC1 (ENSSPAG00000004719)	FAT3 (ENSSPAG00000004420)	mtnr1bb (ENSSPAG00000004357)	timm10b (ENSSPAG00000004351)	ILK (ENSSPAG00000004313)	smpd1 (ENSSPAG00000004292)	tpte (ENSSPAG00000004230)	fgl1b (ENSSPAG00000004213)
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT01060000248594.e.b.b	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Fugu	MODERN SPECIES	6	ENSTRUG00000027047	trim47 (ENSTRUG00000005410)	trim3b (ENSTRUG00000005754)	fhdc3 (ENSTRUG00000021598)	arfip2b (ENSTRUG00000006003)	ENSTRUG00000006179	ENSTRUG00000027269	SLC46A3 (ENSTRUG00000006786)	synj1 (ENSTRUG00000006907) #30	cfap298 (ENSTRUG00000007351) #29	EVA1C (ENSTRUG00000007523) #28	ENSTRUG00000007596	ENSTRUG00000007712 #25	ENSTRUG00000007755	SCAF4 (ENSTRUG00000023543) #23	sod1 (ENSTRUG00000026104) #22	TIAM1 (ENSTRUG00000008344) #18	GRIK1 (ENSTRUG00000008769)	ENSTRUG00000020206	ENSTRUG00000019632	RAB38 (ENSTRUG00000030653)	TYR (ENSTRUG00000009506)	CHORDC1 (ENSTRUG00000009638)	mtnr1bb (ENSTRUG00000010549)	ENSTRUG00000023116	timm10b (ENSTRUG00000022661)	ILK (ENSTRUG00000010691)	smpd1 (ENSTRUG00000010870)	tpte (ENSTRUG00000020934)	ENSTRUG00000011176	ENSTRUG00000011379
Tetraodon	MODERN SPECIES	22	trpc4a (ENSTNIG00000009931)	ENSTNIG00000009932	frem2a (ENSTNIG00000009933)	trim47 (ENSTNIG00000009934)	trim3b (ENSTNIG00000009935)	fhdc3 (ENSTNIG00000009936)	arfip2b (ENSTNIG00000009937)	ENSTNIG00000009938	SLC46A3 (ENSTNIG00000009939)	synj1 (ENSTNIG00000009940) #30	cfap298 (ENSTNIG00000009941) #29	ENSTNIG00000009942	haus1 (ENSTNIG00000009943)	ENSTNIG00000009944	SCAF4 (ENSTNIG00000009945) #23	sod1 (ENSTNIG00000009946) #22	TIAM1 (ENSTNIG00000009947) #18	GRIK1 (ENSTNIG00000009948)	ENSTNIG00000000652	ENSTNIG00000001421	RAB38 (ENSTNIG00000009949)	grm5a (ENSTNIG00000009950)	TYR (ENSTNIG00000009951)	CHORDC1 (ENSTNIG00000009952)	FAT3 (ENSTNIG00000009953)	mtnr1bb (ENSTNIG00000001435)	ENSTNIG00000009954	timm10b (ENSTNIG00000009955)	ILK (ENSTNIG00000009956)	smpd1 (ENSTNIG00000009957)	tpte (ENSTNIG00000009958)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Ballan wrasse	MODERN SPECIES	137							ENSLBEG00000015470	SLC46A3 (ENSLBEG00000015422)	synj1 (ENSLBEG00000015081) #30	cfap298 (ENSLBEG00000014927) #29	EVA1C (ENSLBEG00000014876) #28	haus1 (ENSLBEG00000014807)	ENSLBEG00000014772 #25	ENSLBEG00000014742	SCAF4 (ENSLBEG00000014675) #23	sod1 (ENSLBEG00000014628) #22	TIAM1 (ENSLBEG00000014462) #18	ENSLBEG00000014320	ENSLBEG00000014281	bach1b (ENSLBEG00000014243)	RAB38 (ENSLBEG00000014210)	grm5a (ENSLBEG00000014174)	TYR (ENSLBEG00000013616)	CHORDC1 (ENSLBEG00000013351)	FAT3 (ENSLBEG00000013229)	mtnr1bb (ENSLBEG00000013178)	timm10b (ENSLBEG00000013158)	ILK (ENSLBEG00000013106)	smpd1 (ENSLBEG00000013072)	tpte (ENSLBEG00000013011)	fgl1b (ENSLBEG00000012972)
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
European seabass	MODERN SPECIES	4	trpc4a (ENSDLAG00005004791)	ufm1 (ENSDLAG00005004776)	frem2a (ENSDLAG00005004232)	trim47 (ENSDLAG00005034421)	trim3b (ENSDLAG00005020416)	fhdc3 (ENSDLAG00005020394)	arfip2b (ENSDLAG00005032442)	ENSDLAG00005019758	ENSDLAG00005019717	synj1 (ENSDLAG00005019282) #30	cfap298 (ENSDLAG00005019232) #29	EVA1C (ENSDLAG00005019211) #28	ENSDLAG00005019203	MIS18A (ENSDLAG00005027445) #25	ENSDLAG00005019187	sod1 (ENSDLAG00005031669) #22	ENSDLAG00005018969 #18	ENSDLAG00005018607	ENSDLAG00005018583	ENSDLAG00005018578	grm5a (ENSDLAG00005017735)	ENSDLAG00005017700	ENSDLAG00005017673	ENSDLAG00005017075	mtnr1bb (ENSDLAG00005017016)	ENSDLAG00005017006	ENSDLAG00005004655	timm10b (ENSDLAG00005016971)	ENSDLAG00005016793	smpd1 (ENSDLAG00005016778)	tpte (ENSDLAG00005016691)
Large yellow croaker	MODERN SPECIES	493	frem2a (ENSLCRG00005006908)	trim47 (ENSLCRG00005006900)	trim3b (ENSLCRG00005006814)	fhdc3 (ENSLCRG00005006808)	arfip2b (ENSLCRG00005006792)	ENSLCRG00005006790	ENSLCRG00005006773	SLC46A3 (ENSLCRG00005006771)	synj1 (ENSLCRG00005006705) #30	cfap298 (ENSLCRG00005006697) #29	EVA1C (ENSLCRG00005006694) #28	haus1 (ENSLCRG00005006691)	ENSLCRG00005006688 #25	ENSLCRG00005006685	SCAF4 (ENSLCRG00005006680) #23	sod1 (ENSLCRG00005006676) #22	TIAM1 (ENSLCRG00005006462) #18	GRIK1 (ENSLCRG00005004607)	ENSLCRG00005004579	ENSLCRG00005004577	RAB38 (ENSLCRG00005004575)	grm5a (ENSLCRG00005003282)	TYR (ENSLCRG00005003237)	CHORDC1 (ENSLCRG00005002877)	FAT3 (ENSLCRG00005002375)	mtnr1bb (ENSLCRG00005002330)	timm10b (ENSLCRG00005002329)	ILK (ENSLCRG00005002314)	ENSLCRG00005002310	smpd1 (ENSLCRG00005002309)	tpte (ENSLCRG00005001813)
Gilthead seabream	MODERN SPECIES	4	ufm1 (ENSSAUG00010016656)	frem2a (ENSSAUG00010016647)	trim47 (ENSSAUG00010016644)	trim3b (ENSSAUG00010016576)	fhdc3 (ENSSAUG00010016566)	arfip2b (ENSSAUG00010016561)	ENSSAUG00010016396	SLC46A3 (ENSSAUG00010016377)	synj1 (ENSSAUG00010014191) #30	cfap298 (ENSSAUG00010014163) #29	EVA1C (ENSSAUG00010014161) #28	haus1 (ENSSAUG00010014160)	ENSSAUG00010014154 #25	ENSSAUG00010014152	SCAF4 (ENSSAUG00010014148) #23	Cu-Zn-SOD (ENSSAUG00010014144) #22	TIAM1 (ENSSAUG00010013609) #18	GRIK1 (ENSSAUG00010013271)	ENSSAUG00010013262	bach1b (ENSSAUG00010013261)	RAB38 (ENSSAUG00010013260)	grm5a (ENSSAUG00010012257)	TYR (ENSSAUG00010012219)	CHORDC1 (ENSSAUG00010012191)	FAT3 (ENSSAUG00010011971)	mtnr1bb (ENSSAUG00010011951)	timm10b (ENSSAUG00010011948)	ILK (ENSSAUG00010011916)	smpd1 (ENSSAUG00010011910)	tpte (ENSSAUG00010011794)	fgl1b (ENSSAUG00010011786)
Perciformes	ANCESTRAL SPECIES	22	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Perciformes_a	ANCESTRAL SPECIES	20	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a	ENSGT00940000164070.b
Channel bull blenny	MODERN SPECIES	5	ufm1 (ENSCGOG00000019338)	frem2a (ENSCGOG00000019316)	trim47 (ENSCGOG00000019308)	trim3b (ENSCGOG00000019095)	fhdc3 (ENSCGOG00000019077)	arfip2b (ENSCGOG00000019069)	ENSCGOG00000018908	SLC46A3 (ENSCGOG00000018895)	synj1 (ENSCGOG00000017353) #30	cfap298 (ENSCGOG00000017293) #29	EVA1C (ENSCGOG00000017290) #28	haus1 (ENSCGOG00000017285)	ENSCGOG00000017277 #25	ENSCGOG00000017274	SCAF4 (ENSCGOG00000017271) #23	sod1 (ENSCGOG00000017186) #22	TIAM1 (ENSCGOG00000016714) #18	GRIK1 (ENSCGOG00000014306)	ENSCGOG00000014255	bach1b (ENSCGOG00000014252)	RAB38 (ENSCGOG00000014251)	grm5a (ENSCGOG00000011159)	TYR (ENSCGOG00000010328)	CHORDC1 (ENSCGOG00000010269)	FAT3 (ENSCGOG00000010074)	mtnr1bb (ENSCGOG00000010060)	timm10b (ENSCGOG00000010052)	ILK (ENSCGOG00000010025)	smpd1 (ENSCGOG00000010023)	tpte (ENSCGOG00000010009)	fgl1b (ENSCGOG00000010006)
Pike perch	MODERN SPECIES	54	ufm1 (ENSSLUG00000020832)	frem2a (ENSSLUG00000020843)	trim47 (ENSSLUG00000020910)	trim3b (ENSSLUG00000020932)	fhdc3 (ENSSLUG00000021280)	arfip2b (ENSSLUG00000021284)	ENSSLUG00000021288	SLC46A3 (ENSSLUG00000021296)	synj1 (ENSSLUG00000021328) #30	cfap298 (ENSSLUG00000021648) #29	EVA1C (ENSSLUG00000021655) #28	haus1 (ENSSLUG00000021664)	MIS18A (ENSSLUG00000021672) #25	ENSSLUG00000021676	SCAF4 (ENSSLUG00000021680) #23	sod1 (ENSSLUG00000021693) #22	TIAM1 (ENSSLUG00000021728) #18	GRIK1 (ENSSLUG00000021823)	ENSSLUG00000023271	ENSSLUG00000023273	RAB38 (ENSSLUG00000023278)	grm5a (ENSSLUG00000023313)	TYR (ENSSLUG00000023614)	CHORDC1 (ENSSLUG00000023913)	FAT3 (ENSSLUG00000023927)	mtnr1bb (ENSSLUG00000023937)
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00450000040326	ENSGT00940000155956.d	ENSGT00950000183182.b	ENSGT00940000154335.a
Stickleback	MODERN SPECIES	7	ugt5d1 (ENSGACG00000020566)	POSTN (ENSGACG00000020567)	trpc4a (ENSGACG00000020568)	frem2a (ENSGACG00000020569)	trim47 (ENSGACG00000020570)	trim3b (ENSGACG00000020571)	arfip2b (ENSGACG00000020572)	ENSGACG00000020573	ENSGACG00000020574	synj1 (ENSGACG00000020575) #30	cfap298 (ENSGACG00000020576) #29	EVA1C (ENSGACG00000020577) #28	haus1 (ENSGACG00000020578)	MIS18A (ENSGACG00000020579) #25	SCAF4 (ENSGACG00000020580) #23	sod1 (ENSGACG00000020581) #22	TIAM1 (ENSGACG00000020582) #18	GRIK1 (ENSGACG00000020583)	ENSGACG00000020584	RAB38 (ENSGACG00000020585)	grm5a (ENSGACG00000020586)	TYR (ENSGACG00000020587)	CHORDC1 (ENSGACG00000020588)	FAT3 (ENSGACG00000020589)	mtnr1bb (ENSGACG00000020590)	timm10b (ENSGACG00000020591)	ILK (ENSGACG00000020592)	smpd1 (ENSGACG00000020593)	tpte (ENSGACG00000020594)	vps36 (ENSGACG00000020595)	ENSGACG00000020596
Lumpfish	MODERN SPECIES	5	frem2a (ENSCLMG00005016047)	trim47 (ENSCLMG00005016041)	trim3b (ENSCLMG00005015997)	fhdc3 (ENSCLMG00005015994)	arfip2b (ENSCLMG00005015988)	ENSCLMG00005015974	SLC46A3 (ENSCLMG00005015972)	synj1 (ENSCLMG00005013672) #30	cfap298 (ENSCLMG00005013652) #29	EVA1C (ENSCLMG00005013649) #28	haus1 (ENSCLMG00005013646)	MIS18A (ENSCLMG00005013643) #25	ENSCLMG00005013641 #24	ENSCLMG00005013638 #23	SCAF4 (ENSCLMG00005013636) #23	sod1 (ENSCLMG00005013631) #22	TIAM1 (ENSCLMG00005013537) #18	GRIK1 (ENSCLMG00005013531)	bach1b (ENSCLMG00005013522)	RAB38 (ENSCLMG00005013518)	grm5a (ENSCLMG00005012042)	TYR (ENSCLMG00005011584)	CHORDC1 (ENSCLMG00005011557)	FAT3 (ENSCLMG00005011556)	mtnr1bb (ENSCLMG00005011550)	ENSCLMG00005011549	timm10b (ENSCLMG00005011546)	ILK (ENSCLMG00005011542)	smpd1 (ENSCLMG00005011541)	tpte (ENSCLMG00005011182)	fgl1b (ENSCLMG00005011177)
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT01010000222551	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d
Climbing perch	MODERN SPECIES	5	ufm1 (ENSATEG00000002565)	frem2a (ENSATEG00000002453)	trim47 (ENSATEG00000002424)	trim3b (ENSATEG00000002410)	fhdc3 (ENSATEG00000029428)	arfip2b (ENSATEG00000002359)	ENSATEG00000002335	ENSATEG00000002327	synj1 (ENSATEG00000002306) #30	cfap298 (ENSATEG00000002300) #29	EVA1C (ENSATEG00000002297) #28	ENSATEG00000002239	MIS18A (ENSATEG00000027367) #25	ENSATEG00000028396	ENSATEG00000002140	sod1 (ENSATEG00000002132) #22	ENSATEG00000002024 #18	ENSATEG00000001955	ENSATEG00000026348	ENSATEG00000027171	ENSATEG00000026783	RAB38 (ENSATEG00000001896)	grm5a (ENSATEG00000001806)	TYR (ENSATEG00000001766)	ENSATEG00000001707	ENSATEG00000001415	mtnr1bb (ENSATEG00000001384)	ENSATEG00000028496	ENSATEG00000001319	ENSATEG00000001292	ENSATEG00000001242
Siamese fighting fish	MODERN SPECIES	5	ufm1 (ENSBSLG00000018965)	frem2a (ENSBSLG00000019016)	trim47 (ENSBSLG00000019229)	trim3b (ENSBSLG00000019250)	fhdc3 (ENSBSLG00000019322)	arfip2b (ENSBSLG00000019327)	ENSBSLG00000019340	SLC46A3 (ENSBSLG00000019480)	synj1 (ENSBSLG00000019541) #30	cfap298 (ENSBSLG00000019751) #29	EVA1C (ENSBSLG00000019754) #28	haus1 (ENSBSLG00000019756)	ENSBSLG00000019822 #25	ENSBSLG00000019843	ENSBSLG00000019869	sod1 (ENSBSLG00000019918) #22	TIAM1 (ENSBSLG00000020019) #18	ENSBSLG00000002612	ENSBSLG00000003118	bach1b (ENSBSLG00000003119)	RAB38 (ENSBSLG00000003120)	grm5a (ENSBSLG00000003126)	TYR (ENSBSLG00000003149)	CHORDC1 (ENSBSLG00000003152)	mtnr1bb (ENSBSLG00000003622)	tmem120aa (ENSBSLG00000003943)	ENSBSLG00000004339	CBL (ENSBSLG00000004357)	alkbh4 (ENSBSLG00000004731)	lrwd1 (ENSBSLG00000004809)	bckdk (ENSBSLG00000004982)
Zig-zag eel	MODERN SPECIES	5	frem2a (ENSMAMG00000013783)	trim47 (ENSMAMG00000013735)	trim3b (ENSMAMG00000013623)	fhdc3 (ENSMAMG00000013604)	arfip2b (ENSMAMG00000013559)	ENSMAMG00000013539	ENSMAMG00000013518	ENSMAMG00000013507	synj1 (ENSMAMG00000013404) #30	cfap298 (ENSMAMG00000013330) #29	EVA1C (ENSMAMG00000026897) #28	ENSMAMG00000013309	ENSMAMG00000027556 #25	ENSMAMG00000013238 #23	SCAF4 (ENSMAMG00000025462) #23	sod1 (ENSMAMG00000013206) #22	TIAM1 (ENSMAMG00000013102) #18	ENSMAMG00000013071	ENSMAMG00000013064	ENSMAMG00000013057	RAB38 (ENSMAMG00000013048)	grm5a (ENSMAMG00000013018)	TYR (ENSMAMG00000010767)	ENSMAMG00000010735	ENSMAMG00000003367	mtnr1bb (ENSMAMG00000003294)	ENSMAMG00000025451	ENSMAMG00000003224	ENSMAMG00000003130	ENSMAMG00000002862	ENSMAMG00000002831
Carangaria	ANCESTRAL SPECIES	16	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d	ENSGT00940000155838.f	ENSGT00940000155772.a.b
Seriola	ANCESTRAL SPECIES	2	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00950000182996.b.b.c.b	ENSGT00940000164883	ENSGT00390000007848.a.d	ENSGT00940000155838.f	ENSGT00940000155772.a.b
Greater amberjack	MODERN SPECIES	15	trim47 (ENSSDUG00000013597)	trim3b (ENSSDUG00000013506)	arfip2b (ENSSDUG00000013377)	fhdc3 (ENSSDUG00000013293)	arfip2b (ENSSDUG00000013188)	ENSSDUG00000013169	ENSSDUG00000013123	SLC46A3 (ENSSDUG00000013107)	synj1 (ENSSDUG00000013058) #30	cfap298 (ENSSDUG00000013042) #29	EVA1C (ENSSDUG00000013028) #28	haus1 (ENSSDUG00000013000)	ENSSDUG00000012975 #25	ENSSDUG00000012957	SCAF4 (ENSSDUG00000012918) #23	sod1 (ENSSDUG00000012896) #22	TIAM1 (ENSSDUG00000012780) #18	GRIK1 (ENSSDUG00000012716)	ENSSDUG00000012700	ENSSDUG00000012688	RAB38 (ENSSDUG00000012682)	grm5a (ENSSDUG00000012631)	TYR (ENSSDUG00000011527)	CHORDC1 (ENSSDUG00000011439)	FAT3 (ENSSDUG00000009489)	mtnr1bb (ENSSDUG00000009362)	ENSSDUG00000009348	styxl1 (ENSSDUG00000009323)	tmem120aa (ENSSDUG00000009221)	ENSSDUG00000009185	CBL (ENSSDUG00000009166)
Yellowtail amberjack	MODERN SPECIES	2531			trim3b (ENSSLDG00000021145)	fhdc3 (ENSSLDG00000021165)	arfip2b (ENSSLDG00000021198)	ENSSLDG00000021268	ENSSLDG00000021312	SLC46A3 (ENSSLDG00000021377)	synj1 (ENSSLDG00000021406) #30	cfap298 (ENSSLDG00000021523) #29	ENSSLDG00000021547 #28	haus1 (ENSSLDG00000021621)	MIS18A (ENSSLDG00000021644) #25	ENSSLDG00000021662	SCAF4 (ENSSLDG00000021671) #23	sod1 (ENSSLDG00000021686) #22	ENSSLDG00000021695 #18	TIAM1 (ENSSLDG00000021703) #18	GRIK1 (ENSSLDG00000021732)	ENSSLDG00000021759	ENSSLDG00000021767	RAB38 (ENSSLDG00000021775)
Barramundi perch	MODERN SPECIES	94	ufm1 (ENSLCAG00010024812)	frem2a (ENSLCAG00010024864)	trim47 (ENSLCAG00010024923)	trim3b (ENSLCAG00010025152)	fhdc3 (ENSLCAG00010025546)	arfip2b (ENSLCAG00010025562)	ENSLCAG00010025582	SLC46A3 (ENSLCAG00010025590)	synj1 (ENSLCAG00010025625) #30	cfap298 (ENSLCAG00010025710) #29	EVA1C (ENSLCAG00010025713) #28	haus1 (ENSLCAG00010025714)	MIS18A (ENSLCAG00010025719) #25	ENSLCAG00010025722	SCAF4 (ENSLCAG00010025725) #23	sod1 (ENSLCAG00010025730) #22	TIAM1 (ENSLCAG00010025765) #18	GRIK1 (ENSLCAG00010025844)	ENSLCAG00010025919	ENSLCAG00010025920	RAB38 (ENSLCAG00010025922)	grm5a (ENSLCAG00010025959)	TYR (ENSLCAG00010026011)	CHORDC1 (ENSLCAG00010026012)	FAT3 (ENSLCAG00010026048)	mtnr1bb (ENSLCAG00010026117)	ENSLCAG00010026125	styxl1 (ENSLCAG00010026128)	tmem120aa (ENSLCAG00010026135)	ENSLCAG00010026147	CBL (ENSLCAG00010026149)
Pleuronectoidei	ANCESTRAL SPECIES	32	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00390000006029	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000164659	ENSGT00940000158923.e	ENSGT00940000167916	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b	ENSGT00530000066564	ENSGT00390000007848.a.d	ENSGT00940000155838.f	ENSGT00940000155772.a.b
Tongue sole	MODERN SPECIES	10	ENSCSEG00000019720	ENSCSEG00000019707	rbm14a (ENSCSEG00000019690)	trim3b (ENSCSEG00000019660)	fhdc3 (ENSCSEG00000019646)	arfip2b (ENSCSEG00000019643)	ENSCSEG00000019634	SLC46A3 (ENSCSEG00000019630)	synj1 (ENSCSEG00000019614) #30	cfap298 (ENSCSEG00000019578) #29	EVA1C (ENSCSEG00000019574) #28	haus1 (ENSCSEG00000019569)	ENSCSEG00000019564 #25	ENSCSEG00000019557	SCAF4 (ENSCSEG00000019549) #23	sod1 (ENSCSEG00000019541) #22	TIAM1 (ENSCSEG00000019524) #18	ENSCSEG00000019453	ENSCSEG00000019443	trim47 (ENSCSEG00000019432)	frem2a (ENSCSEG00000019420)	ufm1 (ENSCSEG00000019418)	trpc4a (ENSCSEG00000019268)	POSTN (ENSCSEG00000019240)	ugt5d1 (ENSCSEG00000019234)	ugt5d1 (ENSCSEG00000019213)	SUPT20H (ENSCSEG00000019177)	exosc8 (ENSCSEG00000019201)	slc9a6b (ENSCSEG00000019164)	ENSCSEG00000019156	snx12 (ENSCSEG00000019147)
Turbot	MODERN SPECIES	16	ufm1 (ENSSMAG00000036546)	frem2a (ENSSMAG00000018565)	trim47 (ENSSMAG00000018552)	trim3b (ENSSMAG00000018503)	fhdc3 (ENSSMAG00000018494)	arfip2b (ENSSMAG00000018416)	ENSSMAG00000018355	ENSSMAG00000018345	synj1 (ENSSMAG00000018066) #30	cfap298 (ENSSMAG00000018026) #29	ENSSMAG00000018006	ENSSMAG00000017950	ENSSMAG00000017931 #25	ENSSMAG00000017914	SCAF4 (ENSSMAG00000017901) #23	sod1 (ENSSMAG00000022624) #22	TIAM1 (ENSSMAG00000017828) #18	ENSSMAG00000017697	ENSSMAG00000017677	ENSSMAG00000022085	RAB38 (ENSSMAG00000017666)	grm5a (ENSSMAG00000017570)	TYR (ENSSMAG00000017563)	ENSSMAG00000017549	ENSSMAG00000017111	mtnr1bb (ENSSMAG00000017076)	ENSSMAG00000033863	ENSSMAG00000017034	ENSSMAG00000016816	ENSSMAG00000016766	ENSSMAG00000016756
Protacanthopterygii	ANCESTRAL SPECIES	56	ENSGT00390000011708.a	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000178209	ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b	ENSGT00390000017040	ENSGT00940000155349.d	ENSGT00390000000455.a #31	ENSGT00940000178002	ENSGT00950000183026.B.c.b	ENSGT00970000197619	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	127	ENSGT00530000063860.b.d.c	ENSGT01060000248594.e.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.i	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000163305.a.a	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551.rb #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e.c	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b.d	ENSGT00970000197619	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b	ENSGT00730000111188	ENSGT00390000017209	ENSGT00390000013335	ENSGT00940000154335.a	ENSGT00950000183182.b
Salmoninae_a	ANCESTRAL SPECIES	74	ENSGT01100000263473.a.b.g.a.a.a.a.a.a.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.i	ENSGT00940000157964 #30	ENSGT00390000006278.e #29	ENSGT00940000163305.a.a	ENSGT00940000165963.e	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551.rb #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e.c	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055.fb	ENSGT00940000155947.b.d	ENSGT00390000000455.a #31	ENSGT00950000183026.B.c.b	ENSGT00970000197619	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b	ENSGT00730000111188	ENSGT00390000017209	ENSGT00390000013335
Salmo	ANCESTRAL SPECIES	63	ENSGT01100000263473.a.b.g.a.a.a.a.a.a.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.i	ENSGT00940000157964 #30	ENSGT00390000006278.e #29	ENSGT00940000163305.a.a	ENSGT00940000165963.e	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551.rb #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e.c	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055.fb	ENSGT00940000155947.b.d	ENSGT00390000017040.p	ENSGT01100000263476.E.b.a.a.a.a.a.a.d	ENSGT00390000000455.a #31	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b	ENSGT00730000111188	ENSGT00390000017209	ENSGT00390000013335
River trout	MODERN SPECIES	3	ENSSTUG00000037459	ENSSTUG00000037469	ENSSTUG00000037478	ufm1 (ENSSTUG00000013965)	frem2a (ENSSTUG00000014003)	trim47 (ENSSTUG00000014453)	trim3b (ENSSTUG00000014472)	fhdc3 (ENSSTUG00000014669)	arfip2b (ENSSTUG00000014721)	ENSSTUG00000014836	ENSSTUG00000014866	synj1 (ENSSTUG00000014902) #30	cfap298 (ENSSTUG00000015921) #29	HUNK (ENSSTUG00000015940) #24	ENSSTUG00000015954 #23	sod1 (ENSSTUG00000015962) #22	GRIK1 (ENSSTUG00000015975)	bach1b (ENSSTUG00000015986)	ENSSTUG00000015990	cct8 (ENSSTUG00000015994)	ENSSTUG00000016099	cadm2a (ENSSTUG00000016217)	ENSSTUG00000016291	GBE1 (ENSSTUG00000016303)	ENSSTUG00000016754	paxbp1 (ENSSTUG00000016759) #31	ENSSTUG00000016832	ENSSTUG00000016840	vps36 (ENSSTUG00000016909)	ENSSTUG00000016923	tpte (ENSSTUG00000016945)
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000109241	ENSSSAG00000083905	ufm1 (ENSSSAG00000008037)	frem2a (ENSSSAG00000009901)	trim47 (ENSSSAG00000009878)	trim3b (ENSSSAG00000096494)	fhdc3 (ENSSSAG00000099187)	arfip2b (ENSSSAG00000090083)	ENSSSAG00000008829	ENSSSAG00000088683	synj1 (ENSSSAG00000114205) #30	ENSSSAG00000010089 #29	ENSSSAG00000010073	ENSSSAG00000099510	ENSSSAG00000010048 #23	SOD1 (ENSSSAG00000010103) #22	TIAM1 (ENSSSAG00000087595) #18	GRIK1 (ENSSSAG00000119688)	bach1b (ENSSSAG00000011115)	cct8 (ENSSSAG00000005718)	ENSSSAG00000004340	ENSSSAG00000106024	BAF (ENSSSAG00000054719)	ENSSSAG00000006871	ENSSSAG00000092799	ENSSSAG00000118365	ENSSSAG00000006835 #31	ENSSSAG00000106851	ENSSSAG00000005783	ENSSSAG00000114537	stoml3b (ENSSSAG00000006810)
Oncorhynchus	ANCESTRAL SPECIES	56	ENSGT00530000063860.b.d.c	ENSGT01060000248594.e.b.b	ENSGT01100000263473.a.b.g.a.a.a.a.a.a.b.a	ENSGT01100000263473.a.b.g.a.a.a.a.a.a.a	ENSGT01100000263473.a.b.g.a.a.a.a.a.a.b.b	ENSGT00390000010391	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e.i	ENSGT00940000157964 #30	ENSGT00530000063946.a.a #23	ENSGT00940000155551.rb #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e.c	ENSGT00550000074783	ENSGT00390000016055.fb	ENSGT00390000000455.a #31	ENSGT00950000183026.B.c.b	ENSGT00970000197619	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.b	ENSGT00730000111188	ENSGT00390000017209	ENSGT00390000013335	ENSGT00940000154335.a	ENSGT00950000183182.b
Rainbow trout	MODERN SPECIES	364	ENSOMYG00000029934	frem2a (ENSOMYG00000029949)	trim47 (ENSOMYG00000053644)	trim3b (ENSOMYG00000029805)	fhdc3 (ENSOMYG00000062948)	arfip2b (ENSOMYG00000071920)	ENSOMYG00000073947	ENSOMYG00000055271	ENSOMYG00000029981	synj1 (ENSOMYG00000059609) #30	ENSOMYG00000067891	ENSOMYG00000030024 #29	ENSOMYG00000030001	ENSOMYG00000058818	ENSOMYG00000062621 #23	sod1 (ENSOMYG00000030050) #22	ENSOMYG00000068766	TIAM1 (ENSOMYG00000048618) #18	GRIK1 (ENSOMYG00000050743)	bach1b (ENSOMYG00000070234)	cct8 (ENSOMYG00000030165)	ENSOMYG00000065231	ENSOMYG00000072909	ENSOMYG00000065641	ENSOMYG00000073956	ENSOMYG00000058008	ENSOMYG00000064584	ENSOMYG00000030199	ENSOMYG00000062856	ENSOMYG00000056483	ENSOMYG00000054758
Oncorhynchus_a	ANCESTRAL SPECIES	141	ENSGT00730000111188	ENSGT01030000234614.B.a.a.b.b	ENSGT00950000183096.a.a.c.b.f	ENSGT00970000197619	ENSGT00950000183026.B.c.b	ENSGT00390000000455.a #31	ENSGT00390000016055.fb	ENSGT00550000074783	ENSGT00940000158923.e.c	ENSGT00940000156253.a.a	ENSGT00950000183096.a.a.c.b.e.i	ENSGT00940000179662	ENSGT00940000157964 #30	ENSGT00940000163305.a.a	ENSGT00530000063946.a.a #23	ENSGT00940000155551.rb #22
Coho salmon	MODERN SPECIES	21	ENSOKIG00005030609	ENSOKIG00005030572	CADM2 (ENSOKIG00005030539)	ENSOKIG00005030526	cct8 (ENSOKIG00005030339)	ENSOKIG00005030319	GRIK1 (ENSOKIG00005030196)	ENSOKIG00005029909	ENSOKIG00005029889	ENSOKIG00005029876	ENSOKIG00005029867	synj1 (ENSOKIG00005029425) #30	ENSOKIG00005029376	ENSOKIG00005029363 #24	ENSOKIG00005029350 #23	sod1 (ENSOKIG00005029302) #22	ENSOKIG00005029247	ENSOKIG00005029237	ENSOKIG00005029218	ENSOKIG00005029210	chek1 (ENSOKIG00005029079)	ENSOKIG00005029069	DLAT (ENSOKIG00005028728)	ENSOKIG00005028675	ENSOKIG00005028655	TOMM40L (ENSOKIG00005028582)	ENSOKIG00005028566	bicdl2 (ENSOKIG00005028553)	hspb2 (ENSOKIG00005028541)	ENSOKIG00005028529	ENSOKIG00005028518
Chinook salmon	MODERN SPECIES	26	ENSOTSG00005024111	ENSOTSG00005024114	ENSOTSG00005024177	ENSOTSG00005024180	ENSOTSG00005024181	ENSOTSG00005024182	alg5 (ENSOTSG00005024185)	exosc8 (ENSOTSG00005024572)	trim3b (ENSOTSG00005024575)	trim47 (ENSOTSG00005024581)	ENSOTSG00005024582	ENSOTSG00005024583	ENSOTSG00005024584	ENSOTSG00005024586	cfap298 (ENSOTSG00005024587) #29	sod1 (ENSOTSG00005024589) #22	ENSOTSG00005024594	ddx52 (ENSOTSG00005024599)	ENSOTSG00005024601	pigs (ENSOTSG00005024602)	ENSOTSG00005024605	rpl23a (ENSOTSG00005024606)	ENSOTSG00005024609
Huchen	MODERN SPECIES	8871																sod1 (ENSHHUG00000000863) #22
Salmoninae	ANCESTRAL SPECIES	1351														ENSGT00940000154267.B #25	ENSGT00940000165963	ENSGT00940000155551.sb #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	8536																sod1 (ENSHHUG00000009098) #22
Huchen	MODERN SPECIES	8516																sod1 (ENSHHUG00000008250) #22
Salmoninae_a	ANCESTRAL SPECIES	138								ENSGT01100000263473.a.b.g.a.a.a.a.b	ENSGT01100000263483.F.b.a.a.f	ENSGT01100000263483.B.e.b	ENSGT00390000011708.a	ENSGT01010000222294.c.b.b.a.a.b.b	ENSGT00950000183096.a.a.c.b.e.j	ENSGT00940000154267.B #25	ENSGT00940000165963.f	ENSGT00940000155551.sb #22	ENSGT00940000158923.e.d	ENSGT00940000155947.b.c	ENSGT00940000155349.d	ENSGT00940000164070.b	ENSGT00450000040326	ENSGT01050000244891.B	ENSGT00940000157301.b.e	ENSGT00510000048311	ENSGT00940000163922.a	ENSGT00940000163234.a.b.e	ENSGT00910000144784.b	ENSGT00390000016675	ENSGT00390000000378.d.a.o.b.f	ENSGT00940000164330.j.b	ENSGT00940000155585.b.h
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000154934.A.db.a.a	ENSGT00940000154956.sb.b.l	ENSGT00390000006573.l	ENSGT00390000013549.a.a.d	ENSGT00940000165682.ib	ENSGT00940000165682.hb	ENSGT00530000063860.b.d.d	ENSGT01100000263473.a.b.g.a.a.a.a.b	ENSGT01100000263483.F.b.a.a.f	ENSGT01100000263483.B.e.b	ENSGT00390000011708.a	ENSGT01010000222294.c.b.b.a.a.b.b	ENSGT00950000183096.a.a.c.b.e.j	ENSGT00940000154267.B #25	ENSGT00940000165963.f	ENSGT00940000155551.sb #22	ENSGT00940000158923.e.d	ENSGT00940000155947.b.c	ENSGT00940000155349.d	ENSGT00940000164070.b	ENSGT00450000040326	ENSGT01050000244891.B	ENSGT00940000157301.b.e	ENSGT00510000048311	ENSGT00940000163922.a	ENSGT00940000163234.a.b.e	ENSGT00940000157119.b	ENSGT00940000153576.c.b.x.d.a	ENSGT00390000016675	ENSGT00940000155585.b.h	ENSGT00940000154175.e.a
River trout	MODERN SPECIES	10	rfxap (ENSSTUG00000011815)	ENSSTUG00000011804	ENSSTUG00000011606	ugt5d1 (ENSSTUG00000011596)	ugt5d1 (ENSSTUG00000011585)	ENSSTUG00000009888	ENSSTUG00000009858	ENSSTUG00000009851	ENSSTUG00000009845	ENSSTUG00000009837	zgc:64002 (ENSSTUG00000009826)	ENSSTUG00000009806	SLC46A3 (ENSSTUG00000009798)	ENSSTUG00000009779 #25	ENSSTUG00000009764	ENSSTUG00000009723 #22	cadm2a (ENSSTUG00000009702)	ENSSTUG00000009699	ENSSTUG00000009679	ENSSTUG00000009664	ENSSTUG00000009661	ENSSTUG00000009627	ENSSTUG00000009547	fgl1b (ENSSTUG00000009539)	ENSSTUG00000009534	timm10b (ENSSTUG00000009531)	kpna7 (ENSSTUG00000009172)	RAB38 (ENSSTUG00000009146)	tmigd1 (ENSSTUG00000009140)	slc47a1 (ENSSTUG00000009090)	ENSSTUG00000008998
Oncorhynchus	ANCESTRAL SPECIES	105	ENSGT00940000154956.sb.b.l	ENSGT00390000006573.l	ENSGT00940000154391.a.b.d	ENSGT01060000253588	ENSGT00390000013549.a.a.d	ENSGT00940000165682.ib	ENSGT00530000063860.b.d.d	ENSGT01100000263473.a.b.g.a.a.a.a.b	ENSGT01100000263483.F.b.a.a.f	ENSGT01100000263483.B.e.b	ENSGT00390000011708.a	ENSGT01010000222294.c.b.b.a.a.b.b	ENSGT00950000183096.a.a.c.b.e.j	ENSGT00940000154267.B #25	ENSGT00940000165963.f	ENSGT00940000155551.sb #22	ENSGT00940000158923.e.d	ENSGT00940000155947.b.c	ENSGT00940000155349.d	ENSGT00940000164070.b	ENSGT00450000040326	ENSGT01050000244891.B	ENSGT00940000157301.b.e	ENSGT00510000048311	ENSGT00940000163922.a	ENSGT01090000261850
Oncorhynchus_a	ANCESTRAL SPECIES	143						ENSGT00940000154956.sb.b.l	ENSGT00390000006573.l	ENSGT00940000154391.a.a.f	ENSGT00940000165682.ib	ENSGT00530000063860.b.d.d	ENSGT00390000011708.a	ENSGT01010000222294.c.b.b.a.a.b.b	ENSGT00950000183096.a.a.c.b.e.j	ENSGT00940000154267.B #25	ENSGT00940000165963.f	ENSGT00940000155551.sb #22	ENSGT00940000158923.e.d	ENSGT00940000155947.b.c	ENSGT00940000155349.d	ENSGT00940000164070.b	ENSGT00450000040326	ENSGT01050000244891.B	ENSGT00940000157301.b.e	ENSGT00510000048311	ENSGT00940000163922.a	ENSGT01090000261850	ENSGT00940000163234.a.b.e	ENSGT00940000157119.b	ENSGT00940000153576.c.b.x.c
Coho salmon	MODERN SPECIES	20	ENSOKIG00005039983	DCLK1 (ENSOKIG00005040005)	ENSOKIG00005040179	ENSOKIG00005040221	ENSOKIG00005040286	ENSOKIG00005041090	ENSOKIG00005041121	POSTN (ENSOKIG00005041240)	zgc:64002 (ENSOKIG00005042624)	ENSOKIG00005042637	ENSOKIG00005042643	SLC46A3 (ENSOKIG00005042656)	ENSOKIG00005042672 #25	ENSOKIG00005042687	ENSOKIG00005042703	SOD1 (ENSOKIG00005042715) #22	ENSOKIG00005042764	CADM2 (ENSOKIG00005042784)	ENSOKIG00005042929	ENSOKIG00005042962	ENSOKIG00005042984	SLC7A1 (ENSOKIG00005043000)	fgl1b (ENSOKIG00005043048)	kpna7 (ENSOKIG00005043126)	ENSOKIG00005044383	tmigd1 (ENSOKIG00005044394)	ENSOKIG00005044409	ENSOKIG00005044424	ENSOKIG00005044442	ENSOKIG00005044490	PITPNA (ENSOKIG00005044499)
Chinook salmon	MODERN SPECIES	489														ENSOTSG00005046024	KCNS2 (ENSOTSG00005046026)	sod1 (ENSOTSG00005046027) #22	ENSOTSG00005046028
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000077537	ENSOMYG00000059445	ENSOMYG00000074948	ENSOMYG00000051015	ENSOMYG00000060241	ENSOMYG00000007420	ENSOMYG00000036108	ENSOMYG00000076681	ENSOMYG00000076454	ENSOMYG00000063948	ENSOMYG00000071192	ENSOMYG00000053902	ENSOMYG00000070579 #25	ENSOMYG00000060799	ENSOMYG00000061754	sodc (ENSOMYG00000006482) #22	ENSOMYG00000057103	ENSOMYG00000059488	ENSOMYG00000056066	ENSOMYG00000067992	ENSOMYG00000001973	ENSOMYG00000001874	ENSOMYG00000001850	ENSOMYG00000001843	ENSOMYG00000001823
Northern pike	MODERN SPECIES	6	ENSELUG00000009224	ENSELUG00000009194	trim3b (ENSELUG00000009293)	fhdc3 (ENSELUG00000001613)	arfip2b (ENSELUG00000009394)	ENSELUG00000009459	ENSELUG00000028080	ENSELUG00000009503	synj1 (ENSELUG00000009731) #30	cfap298 (ENSELUG00000009800) #29	ENSELUG00000009820	ENSELUG00000009836	ENSELUG00000009848 #25	ENSELUG00000009873	SCAF4 (ENSELUG00000009909) #23	sod1 (ENSELUG00000009923) #22	TIAM1 (ENSELUG00000010079) #18	GRIK1 (ENSELUG00000010163)	bach1b (ENSELUG00000010195)	ENSELUG00000001634	cct8 (ENSELUG00000010278)	ENSELUG00000010324	cadm2a (ENSELUG00000010397)	ENSELUG00000025662	GBE1 (ENSELUG00000010506)	SLC7A1 (ENSELUG00000010561)	paxbp1 (ENSELUG00000010656) #31	ENSELUG00000032190	ENSELUG00000010708	ENSELUG00000010745	ENSELUG00000010789
Otomorpha	ANCESTRAL SPECIES	68	ENSGT00940000155313.g.a	ENSGT00940000166566	ENSGT00940000158173.e	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000163671.a.b	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000162103 #28	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00940000163305.a.a	ENSGT00940000165963	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783
Otophysi	ANCESTRAL SPECIES	18	ENSGT00940000162103 #28	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000155128.a.a.a.b	ENSGT00940000158173.e	ENSGT00940000166566	ENSGT00940000155313.g.a	ENSGT00390000010391	ENSGT01060000248594.e.b.b	ENSGT00530000063860.b.d	ENSGT00940000165682	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B	ENSGT00940000154174.gb	ENSGT00940000154981.bb.b	ENSGT00940000166267.b.a	ENSGT00450000040326	ENSGT00940000155956.c
Characiphysae	ANCESTRAL SPECIES	85	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000155128.a.a.a.b	ENSGT00940000158173.e	ENSGT00940000166566	ENSGT00940000155313.g.a	ENSGT00390000010391	ENSGT01060000248594.e.b.b	ENSGT00530000063860.b.d	ENSGT00940000165682	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b.a	ENSGT00450000040326	ENSGT00940000155956.c
Channel catfish	MODERN SPECIES	7	eva1c (ENSIPUG00000010645)	c16h21orf59 (ENSIPUG00000010657) #29	SYNJ1 (ENSIPUG00000010691) #30	slc46a3 (ENSIPUG00000010816)	DCHS1 (ENSIPUG00000010844)	ARFIP2 (ENSIPUG00000010908)	fhdc3 (ENSIPUG00000011013)	trim3b (ENSIPUG00000011031)	trim47 (ENSIPUG00000011100)	frem2a (ENSIPUG00000011125)	ufm1 (ENSIPUG00000011167)	trpc4a (ENSIPUG00000011211)	postn (ENSIPUG00000011234)	ENSIPUG00000011266	scaf4 (ENSIPUG00000011285) #23	sod1 (ENSIPUG00000011341) #22	tiam1 (ENSIPUG00000011409) #18	GRIK1 (ENSIPUG00000011621)	bach1b (ENSIPUG00000011672)	map3k7cl (ENSIPUG00000011695)	cct8 (ENSIPUG00000011723)	TMEM135 (ENSIPUG00000011850)	RAB38 (ENSIPUG00000011906)	grm5 (ENSIPUG00000011921)	TYR (ENSIPUG00000011963)	kpna7 (ENSIPUG00000011977)	chordc1b (ENSIPUG00000012005)	FAT3 (ENSIPUG00000012175)	mtnr1bb (ENSIPUG00000012247)	timm10b (ENSIPUG00000012251)	ILK (ENSIPUG00000012264)
Characiphysae_b	ANCESTRAL SPECIES	19	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000155128.a.a.a.b	ENSGT00940000158173.e	ENSGT00940000166566	ENSGT00940000155313.g.a	ENSGT00390000010391	ENSGT01060000248594.e.b.b	ENSGT00530000063860.b.d	ENSGT00940000165682	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b.a	ENSGT00450000040326	ENSGT00940000155956.c
Characoidei	ANCESTRAL SPECIES	11	ENSGT00940000163305.a.a	ENSGT00390000006278 #29	ENSGT00940000157964 #30	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000155128.a.a.a.b	ENSGT00940000158173.e	ENSGT00940000166566	ENSGT00940000155313.g.a	ENSGT00390000010391	ENSGT01060000248594.e.b.b	ENSGT00530000063860.b.d	ENSGT00940000165682	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT00940000155336.g.b	ENSGT01050000244891.B	ENSGT00940000154174.fb.a	ENSGT00940000154981.bb.b	ENSGT00940000166267.b.a	ENSGT00450000040326	ENSGT00940000155956.c
Red-bellied piranha	MODERN SPECIES	18	ENSPNAG00000016151	ENSPNAG00000005459	b3glctb (ENSPNAG00000016212)	rxfp2a (ENSPNAG00000016255)	FRY (ENSPNAG00000016552)	trim47 (ENSPNAG00000016574)	trim3b (ENSPNAG00000016628)	frem2a (ENSPNAG00000016732)	ufm1 (ENSPNAG00000016742)	trpc4a (ENSPNAG00000016793)	POSTN (ENSPNAG00000016840)	ugt5d1 (ENSPNAG00000016856)	ugt5d1 (ENSPNAG00000016865)	ugt5d1 (ENSPNAG00000016871)	ENSPNAG00000016892 #23	sod1 (ENSPNAG00000016917) #22	TIAM1 (ENSPNAG00000017046) #18	GRIK1 (ENSPNAG00000017237)	bach1b (ENSPNAG00000017269)	ENSPNAG00000017289	cct8 (ENSPNAG00000017379)	tmem135 (ENSPNAG00000005142)	RAB38 (ENSPNAG00000017466)	grm5a (ENSPNAG00000017514)	TYR (ENSPNAG00000017526)	kpna7 (ENSPNAG00000017566)	ENSPNAG00000017606	FAT3 (ENSPNAG00000003491)	mtnr1bb (ENSPNAG00000017693)	timm10b (ENSPNAG00000017701)	ilk (ENSPNAG00000017788)
Mexicana tetra	MODERN SPECIES	12	SLC46A3 (ENSAMXG00000008270)	ENSAMXG00000042906	ENSAMXG00000008315	arfip2b (ENSAMXG00000030970)	fhdc3 (ENSAMXG00000008394)	trim3b (ENSAMXG00000008421)	trim47 (ENSAMXG00000042288)	frem2a (ENSAMXG00000008482)	ufm1 (ENSAMXG00000032904)	trpc4a (ENSAMXG00000040649)	POSTN (ENSAMXG00000008544)	ugt5d1 (ENSAMXG00000025902)	ugt5d1 (ENSAMXG00000029616)	ugt5d1 (ENSAMXG00000035541)	SCAF4 (ENSAMXG00000008585) #23	sod1 (ENSAMXG00000008618) #22	ENSAMXG00000008629	ENSAMXG00000043795	TIAM1 (ENSAMXG00000008650) #18	GRIK1 (ENSAMXG00000008675)	bach1b (ENSAMXG00000008686)	ENSAMXG00000036840	cct8 (ENSAMXG00000008695)	tmem135 (ENSAMXG00000043410)	ENSAMXG00000041457	RAB38 (ENSAMXG00000008719)	grm5a (ENSAMXG00000008729)	TYR (ENSAMXG00000008748)	kpna7 (ENSAMXG00000008758)	ENSAMXG00000031523	FAT3 (ENSAMXG00000008769)
Electric eel	MODERN SPECIES	46	ENSEEEG00000014260 #25	ENSEEEG00000014262	cfap298 (ENSEEEG00000014265) #29	synj1 (ENSEEEG00000014293) #30	ENSEEEG00000014400	ENSEEEG00000014402	arfip2b (ENSEEEG00000014403)	fhdc3 (ENSEEEG00000014404)	trim3b (ENSEEEG00000014405)	trim47 (ENSEEEG00000014407)	frem2a (ENSEEEG00000014409)	ufm1 (ENSEEEG00000014431)	trpc4a (ENSEEEG00000014433)	POSTN (ENSEEEG00000014437)	SCAF4 (ENSEEEG00000014458) #23	sod1 (ENSEEEG00000014459) #22	TIAM1 (ENSEEEG00000014460) #18	ENSEEEG00000014463	angpt2b (ENSEEEG00000014497)	trappc3 (ENSEEEG00000014549)	ENSEEEG00000014551	ENSEEEG00000014552	ptp4a2b (ENSEEEG00000014553)	anln (ENSEEEG00000014564)	ak2 (ENSEEEG00000014657)	rnf19b (ENSEEEG00000014659)	ndufs5 (ENSEEEG00000014661)	MACF1 (ENSEEEG00000014706)	bmp8a (ENSEEEG00000016421)	zgc:91910 (ENSEEEG00000016422)	ENSEEEG00000016425
Cyprinoidei	ANCESTRAL SPECIES	6	ENSGT00940000153460.c.b.c.b	ENSGT00940000157964 #30	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000163671.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00940000155128.a.a.a.b	ENSGT00940000158173.e	ENSGT00940000166566	ENSGT00940000155313.g.a	ENSGT00390000010391	ENSGT01060000248594.e.b.b	ENSGT01090000260029.a.a.b.a.a.c.a	ENSGT00530000063860.b.d	ENSGT00940000165682	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000000303	ENSGT00940000157301.b.e	ENSGT01030000234595.A.a.jb.b	ENSGT01050000244891.B	ENSGT00940000154174.gb	ENSGT00940000154981.bb.b	ENSGT00940000166267.b.a	ENSGT00450000040326	ENSGT00940000155956.c	ENSGT00950000183182.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	128	ENSGT00940000153460.c.b.c.b.c	ENSGT00940000157964.m #30	ENSGT00950000183096.a.a.c.b.e.a	ENSGT00940000163671.a.b.a.b	ENSGT00950000183040.A.a.c.b.b	ENSGT00940000155128.a.a.a.b.a	ENSGT00940000158173.e.b	ENSGT00940000166566.b	ENSGT00940000155313.g.a.b	ENSGT00390000010391.b	ENSGT01060000248594.e.b.b.a	ENSGT01090000260029.a.a.b.a.a.c.a.a	ENSGT00530000063860.b.d.a	ENSGT00940000165682	ENSGT00530000063946.a.a.a #23	ENSGT00940000155551.tb #22	ENSGT00940000156294.c.a.b #18	ENSGT00940000156253.a.a.a	ENSGT00940000158923.e.b	ENSGT00940000164659.a	ENSGT00550000074783.cb
Goldfish	MODERN SPECIES	1	SLC46A3 (ENSCARG00000053408)	ENSCARG00000053418	ENSCARG00000053447	arfip2b (ENSCARG00000053613)	fhdc3 (ENSCARG00000053762)	trim3b (ENSCARG00000053871)	trim47 (ENSCARG00000054815)	frem2a (ENSCARG00000054841)	ENSCARG00000054919	ufm1 (ENSCARG00000054939)	trpc4a (ENSCARG00000054954)	ftr54 (ENSCARG00000055014)	POSTN (ENSCARG00000055158)	ugt5d1 (ENSCARG00000056987)	SCAF4 (ENSCARG00000057002) #23	sod1 (ENSCARG00000057208) #22	TIAM1 (ENSCARG00000057293) #18	GRIK1 (ENSCARG00000057627)	bach1b (ENSCARG00000060333)	ENSCARG00000060346	cct8 (ENSCARG00000060368)	kpna7 (ENSCARG00000060635)	RAB38 (ENSCARG00000061935)	grm5a (ENSCARG00000061952)	chordc1b (ENSCARG00000062014)	FAT3 (ENSCARG00000062997)	mtnr1bb (ENSCARG00000063714)	SLC7A1 (ENSCARG00000063728)	paxbp1 (ENSCARG00000063788) #31	ENSCARG00000064137	slc43a2b (ENSCARG00000064181)
Cyprininae_a	ANCESTRAL SPECIES	102	ENSGT00940000153460.c.b.c.b.c	ENSGT00940000157964.m #30	ENSGT00950000183096.a.a.c.b.e.a	ENSGT00940000163671.a.b.a.b	ENSGT00950000183040.A.a.c.b.b	ENSGT00940000155128.a.a.a.b.a	ENSGT00940000158173.e.b	ENSGT00940000166566.b	ENSGT00940000155313.g.a.b	ENSGT00390000010391.b	ENSGT01060000248594.e.b.b.a	ENSGT01090000260029.a.a.b.a.a.c.a.a	ENSGT00530000063860.b.d.a	ENSGT00940000165682	ENSGT00530000063946.a.a.a #23	ENSGT00940000155551.tb #22	ENSGT00940000156294.c.a.b #18	ENSGT00940000156253.a.a.a	ENSGT00940000158923.e.b	ENSGT00940000164659.a	ENSGT00550000074783.cb	ENSGT00390000000303.e	ENSGT00940000157301.b.e.b	ENSGT01030000234595.A.a.jb.b.a	ENSGT01050000244891.B	ENSGT00940000154174.gb.a.b	ENSGT00940000154981.bb.b.a	ENSGT00940000166267.b.a.a	ENSGT00450000040326.k	ENSGT00940000155956.c.d	ENSGT00950000183182.b.g
Common carp reference	MODERN SPECIES	24	synj1 (ENSCCRG00000035105) #30	ENSCCRG00000070682	ENSCCRG00000078811	arfip2b (ENSCCRG00000079935)	fhdc3 (ENSCCRG00000036002)	trim3b (ENSCCRG00000036013)	trim47 (ENSCCRG00000036034)	frem2a (ENSCCRG00000079281)	ufm1 (ENSCCRG00000056965)	trpc4a (ENSCCRG00000028994)	ENSCCRG00000013510	ftr54 (ENSCCRG00000019657)	POSTN (ENSCCRG00000017743)	ugt5d1 (ENSCCRG00000017714)	ENSCCRG00000017707 #23	sod1 (ENSCCRG00000017702) #22	TIAM1 (ENSCCRG00000064964) #18	GRIK1 (ENSCCRG00000016651)	bach1b (ENSCCRG00000016636)	cct8 (ENSCCRG00000015793)	tmem135 (ENSCCRG00000015716)	ENSCCRG00000057517	grm5a (ENSCCRG00000025462)	kpna7 (ENSCCRG00000025469)	chordc1b (ENSCCRG00000025506)	ENSCCRG00000082063	mtnr1bb (ENSCCRG00000021663)	ENSCCRG00000062724	ilk (ENSCCRG00000074643)	smpd1 (ENSCCRG00000023771)	tpte (ENSCCRG00000021786)
Golden-line barbel	MODERN SPECIES	592				ENSSGRG00000032257	arfip2b (ENSSGRG00000032230)	fhdc3 (ENSSGRG00000032228)	trim3b (ENSSGRG00000032194)	trim47 (ENSSGRG00000032193)	frem2a (ENSSGRG00000032165)	ufm1 (ENSSGRG00000032162)	trpc4a (ENSSGRG00000032161)	ftr54 (ENSSGRG00000032160)	POSTN (ENSSGRG00000032156)	ugt5d1 (ENSSGRG00000032152)	SCAF4 (ENSSGRG00000032149) #23	sod1 (ENSSGRG00000032137) #22	TIAM1 (ENSSGRG00000032105) #18	GRIK1 (ENSSGRG00000031890)	bach1b (ENSSGRG00000031884)	ENSSGRG00000031882	cct8 (ENSSGRG00000031511)	tmem135 (ENSSGRG00000031448)	RAB38 (ENSSGRG00000031429)	GRM5 (ENSSGRG00000031423)
Cyprininae	ANCESTRAL SPECIES	426	ENSGT00940000154833.a.a	ENSGT00940000153460.c.b.c.b.d	ENSGT00940000157964.n #30	ENSGT00950000183096.a.a.c.b.e.b	ENSGT00940000163671.a.b.a.a	ENSGT00950000183040.A.a.c.b.a	ENSGT00940000155128.a.a.a.b.b	ENSGT00940000158173.e.a	ENSGT00940000166566.a	ENSGT00940000155313.g.a.a	ENSGT00390000010391.a	ENSGT01060000248594.e.b.b.b	ENSGT01090000260029.a.a.b.a.a.c.a.b	ENSGT00530000063860.b.d.b	ENSGT00530000063946.a.a.b #23	ENSGT00940000155551.ub #22	ENSGT00940000156294.c.a.a #18	ENSGT00940000156253.a.a.b	ENSGT00940000158923.e.a	ENSGT00940000164659.b	ENSGT00550000074783.db	ENSGT00390000000303.f	ENSGT00940000157301.b.e.a	ENSGT01030000234595.A.a.jb.b.b	ENSGT00940000154174.gb.a.a	ENSGT00940000154981.bb.b.b	ENSGT00940000166267.b.a.b
Cyprininae_a	ANCESTRAL SPECIES	132	ENSGT00940000154833.a.a	ENSGT00940000153460.c.b.c.b.d	ENSGT00940000157964.n #30	ENSGT00950000183096.a.a.c.b.e.b	ENSGT00940000163671.a.b.a.a	ENSGT00950000183040.A.a.c.b.a	ENSGT00940000155128.a.a.a.b.b	ENSGT00940000158173.e.a	ENSGT00940000166566.a	ENSGT00940000155313.g.a.a	ENSGT00390000010391.a	ENSGT01060000248594.e.b.b.b	ENSGT01090000260029.a.a.b.a.a.c.a.b	ENSGT00530000063860.b.d.b	ENSGT00530000063946.a.a.b #23	ENSGT00940000155551.ub #22	ENSGT00940000156294.c.a.a #18	ENSGT00940000156253.a.a.b	ENSGT00940000158923.e.a	ENSGT00940000164659.b	ENSGT00550000074783.db	ENSGT00390000000303.f	ENSGT00940000157301.b.e.a	ENSGT01030000234595.A.a.jb.b.b	ENSGT00940000154174.gb.a.a	ENSGT00940000154981.bb.b.b	ENSGT00940000166267.b.a.b	ENSGT01020000230338.a.b.b.a.a.a.b.a.b.a.a.d.a.a.a.a.a.b.b.b.b	ENSGT00940000155956.c.c	ENSGT00950000183182.b.h	ENSGT00940000154335.a.m
Common carp reference	MODERN SPECIES	32	slc9a6b (ENSCCRG00000033721)	synj1 (ENSCCRG00000025632) #30	ENSCCRG00000035790	ENSCCRG00000036055	arfip2b (ENSCCRG00000076412)	fhdc3 (ENSCCRG00000057263)	trim3b (ENSCCRG00000036065)	trim47 (ENSCCRG00000036902)	frem2a (ENSCCRG00000080619)	ENSCCRG00000052246	ufm1 (ENSCCRG00000074118)	trpc4a (ENSCCRG00000037079)	ftr54 (ENSCCRG00000037089)	POSTN (ENSCCRG00000025588)	ENSCCRG00000017935 #23	sod1 (ENSCCRG00000080987) #22	TIAM1 (ENSCCRG00000017887) #18	GRIK1 (ENSCCRG00000023711)	bach1b (ENSCCRG00000040723)	cct8 (ENSCCRG00000015385)	ENSCCRG00000076626	grm5a (ENSCCRG00000015015)	chordc1b (ENSCCRG00000025673)	ENSCCRG00000070173	mtnr1bb (ENSCCRG00000019810)	ENSCCRG00000057678	ENSCCRG00000021666	ENSCCRG00000021669	ilk (ENSCCRG00000052967)	smpd1 (ENSCCRG00000071565)	tpte (ENSCCRG00000056604)
Goldfish	MODERN SPECIES	28	fhl1b (ENSCARG00000006249)	slc9a6b (ENSCARG00000005966)	synj1 (ENSCARG00000018131) #30	SLC46A3 (ENSCARG00000018028)	ENSCARG00000017771	ENSCARG00000017740	arfip2b (ENSCARG00000017700)	fhdc3 (ENSCARG00000017668)	trim3b (ENSCARG00000017644)	trim47 (ENSCARG00000017627)	frem2a (ENSCARG00000017285)	ufm1 (ENSCARG00000017249)	trpc4a (ENSCARG00000017216)	POSTN (ENSCARG00000017106)	SCAF4 (ENSCARG00000017024) #23	sod1 (ENSCARG00000016996) #22	ENSCARG00000016988	TIAM1 (ENSCARG00000016702) #18	GRIK1 (ENSCARG00000016680)	trpc4a (ENSCARG00000016662)	ufm1 (ENSCARG00000016652)	frem2a (ENSCARG00000016561)	trim47 (ENSCARG00000016528)	trim3b (ENSCARG00000016442)	fhdc3 (ENSCARG00000016412)	arfip2b (ENSCARG00000016388)	cxadr (ENSCARG00000016370)	ehd1b (ENSCARG00000016362)	med13a (ENSCARG00000016246)	ppp2r2ab (ENSCARG00000016054)	bnip3lb (ENSCARG00000016030)
Zebrafish	MODERN SPECIES	1	slc9a6b (ENSDARG00000075382)	synj1 (ENSDARG00000025011) #30	SLC46A3 (ENSDARG00000079933)	ENSDARG00000079850	arfip2b (ENSDARG00000056664)	fhdc3 (ENSDARG00000069129)	trim3b (ENSDARG00000005397)	trim47 (ENSDARG00000056678)	frem2a (ENSDARG00000076856)	ufm1 (ENSDARG00000043857)	trpc4a (ENSDARG00000070507)	ftr54 (ENSDARG00000043850)	POSTN (ENSDARG00000043806)	ugt5d1 (ENSDARG00000002394)	SCAF4 (ENSDARG00000077093) #23	sod1 (ENSDARG00000043848) #22	TIAM1 (ENSDARG00000078430) #18	GRIK1 (ENSDARG00000069139)	bach1b (ENSDARG00000002196)	ENSDARG00000069143	cct8 (ENSDARG00000008243)	tmem135 (ENSDARG00000069157)	RAB38 (ENSDARG00000112889)	grm5a (ENSDARG00000004445)	kpna7 (ENSDARG00000027169)	chordc1b (ENSDARG00000017067)	FAT3 (ENSDARG00000087709)	mtnr1bb (ENSDARG00000086493)	cd209 (ENSDARG00000029461)	ENSDARG00000102034	ENSDARG00000043894
Clupeiformes	ANCESTRAL SPECIES	560																ENSGT00940000155551 #22	ENSGT00940000156294.c.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783
Denticle herring	MODERN SPECIES	16	znhit1 (ENSDCDG00000035126)	mogat3b (ENSDCDG00000035124)	NYAP1 (ENSDCDG00000035120)	atp1b2b (ENSDCDG00000035115)	gltpd2b (ENSDCDG00000035112)	chrne (ENSDCDG00000035072)	PLD2 (ENSDCDG00000034481)	mink1 (ENSDCDG00000032295)	gnb2 (ENSDCDG00000032116)	ENSDCDG00000032111	ENSDCDG00000032106	ENSDCDG00000032091	gucy2d (ENSDCDG00000030620)	si:ch211-284e13.5 (ENSDCDG00000030581)	ENSDCDG00000030578	sod1 (ENSDCDG00000030574) #22	TIAM1 (ENSDCDG00000030530) #18	GRIK1 (ENSDCDG00000027606)	bach1b (ENSDCDG00000027542)	ENSDCDG00000027540	cct8 (ENSDCDG00000027524)	znrd2 (ENSDCDG00000027518)	FAM89B (ENSDCDG00000027517)	ENSDCDG00000027449	frmd8 (ENSDCDG00000027426)	vps51 (ENSDCDG00000027374)	tm7sf2 (ENSDCDG00000027273)	znhit2 (ENSDCDG00000027268)	MRPL49 (ENSDCDG00000027267)	ENSDCDG00000027265	ENSDCDG00000027264
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000016271	tmtops3b (ENSCHAG00000016296)	fgf13b (ENSCHAG00000016452)	f9b (ENSCHAG00000016496)	MCF2 (ENSCHAG00000016562)	neu3.1 (ENSCHAG00000016580)	rbm41 (ENSCHAG00000016591)	trim47 (ENSCHAG00000016599)	trim3b (ENSCHAG00000016622)	ENSCHAG00000016851	ENSCHAG00000016860	cfap298 (ENSCHAG00000016864) #29	synj1 (ENSCHAG00000016950) #30	SLC46A3 (ENSCHAG00000017815)	ENSCHAG00000017829	sod1 (ENSCHAG00000017872) #22	TIAM1 (ENSCHAG00000018070) #18	GRIK1 (ENSCHAG00000018442)	bach1b (ENSCHAG00000020662)	ENSCHAG00000020667	cct8 (ENSCHAG00000020688)	ENSCHAG00000020837	cltca (ENSCHAG00000020897)	ptrh2 (ENSCHAG00000022697)	ENSCHAG00000022732	rnft1 (ENSCHAG00000023238)	med13a (ENSCHAG00000023322)	ercc6l (ENSCHAG00000024713)	AUTS2 (ENSCHAG00000024732)	cxadr (ENSCHAG00000024899)	btg3 (ENSCHAG00000024909)
Osteoglossiformes	ANCESTRAL SPECIES	24	ENSGT00940000155313.g.a.k	ENSGT00940000166566	ENSGT00940000158173.h	ENSGT00940000155128.a.a.a.b	ENSGT00950000183040.A.a.c.b	ENSGT00950000183040.A.a.d	ENSGT00940000163671.a.a.a.a	ENSGT00950000183096.a.a.c.b.e	ENSGT00940000157964 #30	ENSGT00390000006278 #29	ENSGT00940000163305.a.a	ENSGT01030000235126	ENSGT00940000154267.B #25	ENSGT00940000161070 #24	ENSGT00530000063946.a.a #23	ENSGT00940000155551 #22	ENSGT00940000156294.a #18	ENSGT00940000156253.a.a	ENSGT00940000158923.e	ENSGT00940000164659	ENSGT00550000074783	ENSGT00390000016055	ENSGT00940000155947.b	ENSGT00390000000455.a #31	ENSGT00940000155349.d	ENSGT00950000183026.B.c.b	ENSGT01030000234614.B.a.a.b.b	ENSGT00950000183096.a.a.c.b.f	ENSGT01030000234614.B.a.a.b.a.b	ENSGT00730000111188	ENSGT00390000017209
Asian bonytongue	MODERN SPECIES	19	POSTN (ENSSFOG00015005715)	trpc4a (ENSSFOG00015005803)	ufm1 (ENSSFOG00015005850)	frem2a (ENSSFOG00015005858)	TRIM3 (ENSSFOG00015005948)	fhdc3 (ENSSFOG00015005991)	ARFIP2 (ENSSFOG00015006013)	ENSSFOG00015006051	SLC46A3 (ENSSFOG00015006071)	synj1 (ENSSFOG00015006095) #30	cfap298 (ENSSFOG00015006162) #29	ENSSFOG00015006193	ENSSFOG00015006269	ENSSFOG00015006229 #25	HUNK (ENSSFOG00015006294) #24	sod1 (ENSSFOG00015026133) #22	TIAM1 (ENSSFOG00015006359) #18	GRIK1 (ENSSFOG00015006437)	bach1b (ENSSFOG00015006484)	ENSSFOG00015006503	cct8 (ENSSFOG00015006517)	LTN1 (ENSSFOG00015006536)	cadm2a (ENSSFOG00015006550)	paxbp1 (ENSSFOG00015006606) #31	ENSSFOG00015025410	ENSSFOG00015006755	ENSSFOG00015006770	STOML3 (ENSSFOG00015006805)	PROSER1 (ENSSFOG00015006843)	vps36 (ENSSFOG00015006867)	ENSSFOG00015006917
P. kingsleyae	MODERN SPECIES	78	trpc4a (ENSPKIG00000023072)	ufm1 (ENSPKIG00000023050)	frem2a (ENSPKIG00000023000)	trim47 (ENSPKIG00000022967)	TRIM3 (ENSPKIG00000022902)	fhdc3 (ENSPKIG00000022843)	arfip2b (ENSPKIG00000022733)	ENSPKIG00000022691	SLC46A3 (ENSPKIG00000022672)	synj1 (ENSPKIG00000022603) #30	ENSPKIG00000022564	ENSPKIG00000022551	ENSPKIG00000022536 #25	HUNK (ENSPKIG00000022484) #24	SCAF4 (ENSPKIG00000022408) #23	sod1 (ENSPKIG00000022372) #22	TIAM1 (ENSPKIG00000022274) #18	GRIK1 (ENSPKIG00000022168)	ENSPKIG00000022129	ENSPKIG00000022113	ENSPKIG00000022093	cct8 (ENSPKIG00000022045)	LTN1 (ENSPKIG00000021993)	cadm2a (ENSPKIG00000021921)	paxbp1 (ENSPKIG00000021866) #31	SLC7A1 (ENSPKIG00000021784)	ENSPKIG00000021737	STOML3 (ENSPKIG00000021724)	PROSER1 (ENSPKIG00000021689)	vps36 (ENSPKIG00000021597)	ENSPKIG00000021573
Reedfish	MODERN SPECIES	1	anxa13l (ENSECRG00000010467)	ENSECRG00000010475	ENSECRG00000010479	MMP24 (ENSECRG00000010491)	eif6 (ENSECRG00000010505)	osgn1 (ENSECRG00000010512)	mtss1 (ENSECRG00000010526)	mych (ENSECRG00000010553)	RBPJL (ENSECRG00000010566)	matn4 (ENSECRG00000010588)	ENSECRG00000010599	ENSECRG00000010605	ENSECRG00000010619	ENSECRG00000010641	ENSECRG00000010688	sod1 (ENSECRG00000010691) #22	pard6b (ENSECRG00000010695)	adnpa (ENSECRG00000010704)	dpm1 (ENSECRG00000010712)	snrpb (ENSECRG00000010721)	cse1l (ENSECRG00000010735)	ENSECRG00000010747	NFATC2 (ENSECRG00000010756)	ATP9A (ENSECRG00000010860)	sall4 (ENSECRG00000011225)	ZFP64 (ENSECRG00000011229)	TSHZ2 (ENSECRG00000011236)	ENSECRG00000011240	znf217 (ENSECRG00000011268)	BCAS1 (ENSECRG00000011313)	cyp24a1 (ENSECRG00000011371)
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1603	smpx (ENSCMIG00000011548)	gtpbp8 (ENSCMIG00000011544)	f10 (ENSCMIG00000011540)	ENSCMIG00000011535	pcid2 (ENSCMIG00000011523)	cul4a (ENSCMIG00000011469)	ENSCMIG00000011427	grtp1b (ENSCMIG00000011419)	ENSCMIG00000011414	ENSCMIG00000011407	ENSCMIG00000011403	ENSCMIG00000011397	CFAP44 (ENSCMIG00000011383)	TIAM1 (ENSCMIG00000011239) #18	sod1 (ENSCMIG00000011197) #22	ENSCMIG00000011194 #22	sod1 (ENSCMIG00000011191) #22	ENSCMIG00000011188	SCAF4 (ENSCMIG00000011151) #23	ENSCMIG00000011135	ENSCMIG00000011132	ENSCMIG00000011130	ENSCMIG00000011128	ENSCMIG00000011123	ENSCMIG00000011118	ENSCMIG00000011116	ENSCMIG00000011112	ENSCMIG00000011109	ENSCMIG00000011107	tmem47 (ENSCMIG00000011097)	ENSCMIG00000011060
Elephant shark	MODERN SPECIES	1603	gtpbp8 (ENSCMIG00000011544)	f10 (ENSCMIG00000011540)	ENSCMIG00000011535	pcid2 (ENSCMIG00000011523)	cul4a (ENSCMIG00000011469)	ENSCMIG00000011427	grtp1b (ENSCMIG00000011419)	ENSCMIG00000011414	ENSCMIG00000011407	ENSCMIG00000011403	ENSCMIG00000011397	CFAP44 (ENSCMIG00000011383)	TIAM1 (ENSCMIG00000011239) #18	sod1 (ENSCMIG00000011197) #22	ENSCMIG00000011194 #22	sod1 (ENSCMIG00000011191) #22	ENSCMIG00000011188	SCAF4 (ENSCMIG00000011151) #23	ENSCMIG00000011135	ENSCMIG00000011132	ENSCMIG00000011130	ENSCMIG00000011128	ENSCMIG00000011123	ENSCMIG00000011118	ENSCMIG00000011116	ENSCMIG00000011112	ENSCMIG00000011109	ENSCMIG00000011107	tmem47 (ENSCMIG00000011097)	ENSCMIG00000011060	DCLK3 (ENSCMIG00000011049)
Elephant shark	MODERN SPECIES	1603	KLHL34 (ENSCMIG00000011550)	smpx (ENSCMIG00000011548)	gtpbp8 (ENSCMIG00000011544)	f10 (ENSCMIG00000011540)	ENSCMIG00000011535	pcid2 (ENSCMIG00000011523)	cul4a (ENSCMIG00000011469)	ENSCMIG00000011427	grtp1b (ENSCMIG00000011419)	ENSCMIG00000011414	ENSCMIG00000011407	ENSCMIG00000011403	ENSCMIG00000011397	CFAP44 (ENSCMIG00000011383)	TIAM1 (ENSCMIG00000011239) #18	sod1 (ENSCMIG00000011197) #22	ENSCMIG00000011194 #22	sod1 (ENSCMIG00000011191) #22	ENSCMIG00000011188	SCAF4 (ENSCMIG00000011151) #23	ENSCMIG00000011135	ENSCMIG00000011132	ENSCMIG00000011130	ENSCMIG00000011128	ENSCMIG00000011123	ENSCMIG00000011118	ENSCMIG00000011116	ENSCMIG00000011112	ENSCMIG00000011109	ENSCMIG00000011107	tmem47 (ENSCMIG00000011097)