Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000159782 #15	ENSGT01100000263709 #16	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648 #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000168471	ENSGT00940000159782 #15	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648 #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Naked mole-rat female	MODERN SPECIES	24	MSANTD4 (ENSHGLG00000015607) #7	KBTBD3 (ENSHGLG00000015784) #8	ENSHGLG00000015842 #9	ENSHGLG00000042979 #10	GUCY1A2 (ENSHGLG00000017468) #11	ENSHGLG00000037587 #12	ALKBH8 (ENSHGLG00000034571) #13	ENSHGLG00000034707 #14	ELMOD1 (ENSHGLG00000016501) #15	ENSHGLG00000043355 #16	RAB39A (ENSHGLG00000042132) #17	ENSHGLG00000039610 #18	CUL5 (ENSHGLG00000006132) #19	ACAT1 (ENSHGLG00000004272) #20	NPAT (ENSHGLG00000006151) #21	ATM (ENSHGLG00000007284) #22	POGLUT3 (ENSHGLG00000016541) #23	EXPH5 (ENSHGLG00000014629) #24	DDX10 (ENSHGLG00000013439) #25	ENSHGLG00000032160 #26	ENSHGLG00000019165 #27	ENSHGLG00000033011 #28	ENSHGLG00000044934 #29	ENSHGLG00000033321 #30	ENSHGLG00000037215 #31	ENSHGLG00000048755 #32	ENSHGLG00000004024 #33	ENSHGLG00000003918 #34	ENSHGLG00000048229 #35	ENSHGLG00000019021 #36	RDX (ENSHGLG00000017347) #37
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000168471	ENSGT00940000159782 #15	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648 #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000168471	ENSGT00940000159782 #15	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648 #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Long-tailed chinchilla	MODERN SPECIES	119	GRIA4 (ENSCLAG00000012261)	MSANTD4 (ENSCLAG00000016121) #7	KBTBD3 (ENSCLAG00000014468) #8	AASDHPPT (ENSCLAG00000015434) #9	GUCY1A2 (ENSCLAG00000017060) #11	CWF19L2 (ENSCLAG00000013844) #12	ENSCLAG00000015715	ENSCLAG00000011087	ELMOD1 (ENSCLAG00000011927) #15	ENSCLAG00000011651	SLC35F2 (ENSCLAG00000016324) #33	RAB39A (ENSCLAG00000013833) #17	CUL5 (ENSCLAG00000012699) #19	ACAT1 (ENSCLAG00000013807) #20	NPAT (ENSCLAG00000014595) #21	ATM (ENSCLAG00000011868) #22	C11orf65 (ENSCLAG00000011009)	POGLUT3 (ENSCLAG00000013476) #23	EXPH5 (ENSCLAG00000014388) #24	DDX10 (ENSCLAG00000013463) #25	C11orf87 (ENSCLAG00000015145) #27	ZC3H12C (ENSCLAG00000012577) #36	RDX (ENSCLAG00000013404) #37	FDX1 (ENSCLAG00000013409)	ENSCLAG00000015869	ARHGAP20 (ENSCLAG00000012051)	ENSCLAG00000015506	POU2AF3 (ENSCLAG00000012877)	POU2AF1 (ENSCLAG00000015586)	BTG4 (ENSCLAG00000013983)	ENSCLAG00000014472
Degu	MODERN SPECIES	53	GRIA4 (ENSODEG00000012048)	MSANTD4 (ENSODEG00000011017) #7	KBTBD3 (ENSODEG00000012092) #8	ENSODEG00000011994 #9	ENSODEG00000012492 #11	ENSODEG00000013543 #12	ALKBH8 (ENSODEG00000011567) #13	ENSODEG00000020136	ELMOD1 (ENSODEG00000015056) #15	SLC35F2 (ENSODEG00000012070) #33	ENSODEG00000012285	RAB39A (ENSODEG00000013106) #17	CUL5 (ENSODEG00000011295) #19	ACAT1 (ENSODEG00000011303) #20	NPAT (ENSODEG00000011867) #21	ATM (ENSODEG00000015667) #22	ENSODEG00000011472	C11orf65 (ENSODEG00000010746)	POGLUT3 (ENSODEG00000010261) #23	EXPH5 (ENSODEG00000012829) #24	ENSODEG00000012589	ENSODEG00000011294	C11orf87 (ENSODEG00000019863) #27	ZC3H12C (ENSODEG00000011026) #36	RDX (ENSODEG00000011001) #37	FDX1 (ENSODEG00000010396)	ARHGAP20 (ENSODEG00000011570)	ENSODEG00000010847	ENSODEG00000011527	ENSODEG00000019923	ENSODEG00000011838
Guinea pig	MODERN SPECIES	136							ENSCPOG00000027134	ENSCPOG00000036448	ELMOD1 (ENSCPOG00000007697) #15	ENSCPOG00000033544	SLC35F2 (ENSCPOG00000035208) #33	RAB39A (ENSCPOG00000040219) #17	CUL5 (ENSCPOG00000011436) #19	ACAT1 (ENSCPOG00000015048) #20	NPAT (ENSCPOG00000010522) #21	ATM (ENSCPOG00000010997) #22	C11orf65 (ENSCPOG00000007853)	POGLUT3 (ENSCPOG00000005942) #23	EXPH5 (ENSCPOG00000033722) #24	DDX10 (ENSCPOG00000000865) #25	ZC3H12C (ENSCPOG00000032962) #36	RDX (ENSCPOG00000003401) #37	FDX1 (ENSCPOG00000033006)
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000159782 #15	ENSGT01100000263709 #16	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648.i #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Marmotini	ANCESTRAL SPECIES	20	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000159782 #15	ENSGT01100000263709 #16	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648.i #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25	ENSGT00390000012905 #27	ENSGT00940000158397 #36	ENSGT01090000260082.d.a.b #37	ENSGT00940000156916	ENSGT00940000154633	ENSGT00390000000586	ENSGT00420000030454	ENSGT00390000017499	ENSGT00390000003661	ENSGT00950000182952.A.a	ENSGT00390000002677
Marmotini_b	ANCESTRAL SPECIES	122	ENSGT00940000159114	ENSGT00940000155677.b	ENSGT00440000039469 #7	ENSGT00940000158415 #8	ENSGT00390000004663 #9	ENSGT00940000157765 #11	ENSGT00940000155627 #12	ENSGT00940000158563 #13	ENSGT00940000159782 #15	ENSGT01100000263709 #16	ENSGT00390000015655.a #33	ENSGT00940000159933 #17	ENSGT00940000156648.i #19	ENSGT01030000234626.E #20	ENSGT00390000012388 #21	ENSGT00670000098061 #22	ENSGT00510000048394	ENSGT00940000159028 #23	ENSGT00390000011087 #24	ENSGT00550000074980 #25
Arctic ground squirrel	MODERN SPECIES	207	ENSUPAG00010007703	GRIA4 (ENSUPAG00010007709)	MSANTD4 (ENSUPAG00010007838) #7	KBTBD3 (ENSUPAG00010007846) #8	AASDHPPT (ENSUPAG00010007855) #9	GUCY1A2 (ENSUPAG00010007868) #11	CWF19L2 (ENSUPAG00010007890) #12	ALKBH8 (ENSUPAG00010007970) #13	ELMOD1 (ENSUPAG00010008041) #15	ENSUPAG00010008058 #16	SLC35F2 (ENSUPAG00010008062) #33	ENSUPAG00010008079 #17	CUL5 (ENSUPAG00010008089) #19	ACAT1 (ENSUPAG00010008119) #20	NPAT (ENSUPAG00010008128) #21	ATM (ENSUPAG00010008165) #22	C11orf65 (ENSUPAG00010008566)	POGLUT3 (ENSUPAG00010008579) #23	EXPH5 (ENSUPAG00010008610) #24	DDX10 (ENSUPAG00010008664) #25
Squirrel	MODERN SPECIES	151	GRIA4 (ENSSTOG00000000265)	MSANTD4 (ENSSTOG00000027044) #7	KBTBD3 (ENSSTOG00000001079) #8	AASDHPPT (ENSSTOG00000000268) #9	GUCY1A2 (ENSSTOG00000013157) #11	ENSSTOG00000027350	ENSSTOG00000033115 #12	ALKBH8 (ENSSTOG00000024939) #13	ELMOD1 (ENSSTOG00000001237) #15	ENSSTOG00000001241	SLC35F2 (ENSSTOG00000011321) #33	RAB39A (ENSSTOG00000003178) #17	CUL5 (ENSSTOG00000014157) #19	ACAT1 (ENSSTOG00000004363) #20	NPAT (ENSSTOG00000004382) #21	ATM (ENSSTOG00000004418) #22	C11orf65 (ENSSTOG00000004513)	POGLUT3 (ENSSTOG00000022975) #23	EXPH5 (ENSSTOG00000004543) #24	DDX10 (ENSSTOG00000005213) #25
Alpin marmot	MODERN SPECIES	25	ENSMMMG00000001339	GRIA4 (ENSMMMG00000001185)	MSANTD4 (ENSMMMG00000001156) #7	KBTBD3 (ENSMMMG00000001143) #8	AASDHPPT (ENSMMMG00000001128) #9	ENSMMMG00000001082 #11	CWF19L2 (ENSMMMG00000001043) #12	ALKBH8 (ENSMMMG00000000941) #13	ELMOD1 (ENSMMMG00000000907) #15	ENSMMMG00000000894 #16	SLC35F2 (ENSMMMG00000000856) #33	RAB39A (ENSMMMG00000000838) #17	CUL5 (ENSMMMG00000000799) #19	ACAT1 (ENSMMMG00000000779) #20	NPAT (ENSMMMG00000000741) #21	ATM (ENSMMMG00000000516) #22	POGLUT3 (ENSMMMG00000000397) #23	EXPH5 (ENSMMMG00000000379) #24	DDX10 (ENSMMMG00000000319) #25	C11orf87 (ENSMMMG00000000289) #27	ZC3H12C (ENSMMMG00000000255) #36	RDX (ENSMMMG00000000190) #37	FDX1 (ENSMMMG00000000150)	ARHGAP20 (ENSMMMG00000000096)	POU2AF2 (ENSMMMG00000000072)	POU2AF3 (ENSMMMG00000000055)	POU2AF1 (ENSMMMG00000023590)	ENSMMMG00000023586	BTG4 (ENSMMMG00000023585)	HOATZ (ENSMMMG00000023581)	LAYN (ENSMMMG00000023575)
Eurasian red squirrel	MODERN SPECIES	2	MSANTD4 (ENSSVLG00005019923) #7	KBTBD3 (ENSSVLG00005019983) #8	AASDHPPT (ENSSVLG00005020020) #9	ENSSVLG00005020058	GUCY1A2 (ENSSVLG00005020104) #11	CWF19L2 (ENSSVLG00005020205) #12	ENSSVLG00005020267 #13	ELMOD1 (ENSSVLG00005020424) #15	ENSSVLG00005020700 #16	SLC35F2 (ENSSVLG00005020721) #33	RAB39A (ENSSVLG00005020904) #17	ENSSVLG00005020943 #19	ENSSVLG00005021019 #19	ENSSVLG00005021105 #20	NPAT (ENSSVLG00005021558) #21	ATM (ENSSVLG00005021633) #22	ENSSVLG00005021707	ENSSVLG00005012524	C11orf65 (ENSSVLG00005012582)	ENSSVLG00005012690	POGLUT3 (ENSSVLG00005012714) #23	EXPH5 (ENSSVLG00005012839) #24	DDX10 (ENSSVLG00005012943) #25	ENSSVLG00005013030	ENSSVLG00005013129	ENSSVLG00005013189	C11orf87 (ENSSVLG00005013245) #27	ENSSVLG00005013311	ENSSVLG00005013356	ZC3H12C (ENSSVLG00005013570) #36	RDX (ENSSVLG00005014006) #37