Bilateria	ANCESTRAL SPECIES																	ENSGT00940000155524 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000155524 #22
Vertebrata	ANCESTRAL SPECIES	834																ENSGT00940000155524 #22	ENSGT00950000182940.a
Gnathostomata	ANCESTRAL SPECIES	478															ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000164099.a.b	ENSGT00390000006548 #23	ENSGT00390000008748.b	ENSGT00940000155628
Euteleostomi	ANCESTRAL SPECIES	338													ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00390000005300	ENSGT00390000008748.b
Sarcopterygii	ANCESTRAL SPECIES	278													ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b
Tetrapoda	ANCESTRAL SPECIES	203															ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b
Amniota	ANCESTRAL SPECIES	15	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889
Mammalia	ANCESTRAL SPECIES	28	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00390000017697.a	ENSGT00940000153424.a.a.d	ENSGT00940000153424.a.a.c.b	ENSGT00940000155907.b	ENSGT00390000003748
Theria	ANCESTRAL SPECIES	42	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00550000074806	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00550000074806	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000007252.d #7	ENSGT01010000228749	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Glires	ANCESTRAL SPECIES	15	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Rodentia	ANCESTRAL SPECIES	3	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Marmotini	ANCESTRAL SPECIES	46	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Marmotini_b	ANCESTRAL SPECIES	42	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.c #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Arctic ground squirrel	MODERN SPECIES	56	SAXO2 (ENSUPAG00010014060) #7	ADAMTSL3 (ENSUPAG00010014069) #8	SH3GL3 (ENSUPAG00010014152) #9	BNC1 (ENSUPAG00010014166) #10	HDGFL3 (ENSUPAG00010014172) #11	TM6SF1 (ENSUPAG00010014190) #12	BTBD1 (ENSUPAG00010014214) #13	C15orf40 (ENSUPAG00010014225) #14	ENSUPAG00010014230 #15	HOMER2 (ENSUPAG00010014240) #16	WHAMM (ENSUPAG00010014251) #17	FSD2 (ENSUPAG00010014272) #18	ENSUPAG00010014301 #19	ENSUPAG00010014306 #20	AP3B2 (ENSUPAG00010014328) #21	CPEB1 (ENSUPAG00010014390) #22	RPS17 (ENSUPAG00010014415) #23	PDE8A (ENSUPAG00010014422) #24	SLC28A1 (ENSUPAG00010014465) #25	ALPK3 (ENSUPAG00010014511) #26	ZNF592 (ENSUPAG00010014720) #27	SEC11A (ENSUPAG00010014756) #28	NMB (ENSUPAG00010014779) #29	WDR73 (ENSUPAG00010014789) #30	ZSCAN2 (ENSUPAG00010014811) #31	ZNF774 (ENSUPAG00010014817) #32	IQGAP1 (ENSUPAG00010014828) #33	CRTC3 (ENSUPAG00010014937) #34	BLM (ENSUPAG00010014964) #35	FURIN (ENSUPAG00010015045) #36	FES (ENSUPAG00010015082) #37
Squirrel	MODERN SPECIES	83	SAXO2 (ENSSTOG00000022059) #7	ADAMTSL3 (ENSSTOG00000012893) #8	SH3GL3 (ENSSTOG00000012886) #9	BNC1 (ENSSTOG00000019904) #10	ENSSTOG00000028389 #11	TM6SF1 (ENSSTOG00000006795) #12	BTBD1 (ENSSTOG00000007221) #13	C15orf40 (ENSSTOG00000029324) #14	ENSSTOG00000022253 #15	HOMER2 (ENSSTOG00000008793) #16	WHAMM (ENSSTOG00000025628) #17	FSD2 (ENSSTOG00000021209) #18	ENSSTOG00000015123 ##19	ENSSTOG00000032004 #20	AP3B2 (ENSSTOG00000013067) #21	CPEB1 (ENSSTOG00000022704) #22	RPS17 (ENSSTOG00000006298) #23	PDE8A (ENSSTOG00000014910) #24	SLC28A1 (ENSSTOG00000013003) #25	ALPK3 (ENSSTOG00000025386) #26	ZNF592 (ENSSTOG00000012942) #27	SEC11A (ENSSTOG00000019948) #28	NMB (ENSSTOG00000001752) #29	WDR73 (ENSSTOG00000001744) #30	ZSCAN2 (ENSSTOG00000001741) #31	ZNF774 (ENSSTOG00000009202) #32	IQGAP1 (ENSSTOG00000009204) #33	CRTC3 (ENSSTOG00000001400) #34	BLM (ENSSTOG00000005000) #35	FURIN (ENSSTOG00000014817) #36	FES (ENSSTOG00000014829) #37
Alpin marmot	MODERN SPECIES	33	ADAMTSL3 (ENSMMMG00000018758) #8	SH3GL3 (ENSMMMG00000018809) #9	BNC1 (ENSMMMG00000018823) #10	ENSMMMG00000018853	ENSMMMG00000018854	TM6SF1 (ENSMMMG00000018856) #12	BTBD1 (ENSMMMG00000018881) #13	C15orf40 (ENSMMMG00000018974) #14	ENSMMMG00000018979 #15	HOMER2 (ENSMMMG00000019018) #16	ENSMMMG00000019022	ENSMMMG00000019025 #17	FSD2 (ENSMMMG00000019035) #18	ENSMMMG00000019050 #20	AP3B2 (ENSMMMG00000019065) #21	CPEB1 (ENSMMMG00000019080) #22	RPS17 (ENSMMMG00000019095) #23	PDE8A (ENSMMMG00000019109) #24	SLC28A1 (ENSMMMG00000019130) #25	ENSMMMG00000019145 #26	ZNF592 (ENSMMMG00000019152) #27	SEC11A (ENSMMMG00000019183) #28	NMB (ENSMMMG00000019202) #29	WDR73 (ENSMMMG00000019207) #30	ZSCAN2 (ENSMMMG00000019208) #31	ZNF774 (ENSMMMG00000019213) #32	IQGAP1 (ENSMMMG00000019220) #33	CRTC3 (ENSMMMG00000019231) #34	BLM (ENSMMMG00000019250) #35	FURIN (ENSMMMG00000019258) #36	FES (ENSMMMG00000019275) #37
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005009994	ADAMTSL3 (ENSSVLG00005009951) #8	SH3GL3 (ENSSVLG00005009873) #9	BNC1 (ENSSVLG00005009822) #10	HDGFL3 (ENSSVLG00005009792) #11	TM6SF1 (ENSSVLG00005009731) #12	ENSSVLG00005009612 #13	C15orf40 (ENSSVLG00005009516) #14	ENSSVLG00005009494	ENSSVLG00005009475 #15	HOMER2 (ENSSVLG00005009442) #16	WHAMM (ENSSVLG00005009413) #17	FSD2 (ENSSVLG00005009287) #18	ENSSVLG00005009229 #20	AP3B2 (ENSSVLG00005008694) #21	CPEB1 (ENSSVLG00005008468) #22	ENSSVLG00005008428 #23	ENSSVLG00005008415	ENSSVLG00005008395	ENSSVLG00005008179 #24	ENSSVLG00005008121 #25	ENSSVLG00005008073	ENSSVLG00005008048 #26	ZNF592 (ENSSVLG00005008020) #27	ENSSVLG00005007947 #28	NMB (ENSSVLG00005007910) #29	WDR73 (ENSSVLG00005007848) #30	ZSCAN2 (ENSSVLG00005007818) #31	ZNF774 (ENSSVLG00005007763) #32	IQGAP1 (ENSSVLG00005007688) #33	ENSSVLG00005007636 #34
Hystricomorpha	ANCESTRAL SPECIES	40	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.A.a.b ##34	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Guinea pig	MODERN SPECIES	10	EFL1 (ENSCPOG00000001924)	SAXO2 (ENSCPOG00000026864) #7	ADAMTSL3 (ENSCPOG00000003974) #8	SH3GL3 (ENSCPOG00000003970) #9	BNC1 (ENSCPOG00000009045) #10	HDGFL3 (ENSCPOG00000010982) #11	TM6SF1 (ENSCPOG00000002868) #12	BTBD1 (ENSCPOG00000001707) #13	C15orf40 (ENSCPOG00000001706) #14	ENSCPOG00000033303 #15	HOMER2 (ENSCPOG00000014688) #16	ENSCPOG00000014684 #17	FSD2 (ENSCPOG00000002729) #18	ENSCPOG00000039990 #20	AP3B2 (ENSCPOG00000011663) #21	CPEB1 (ENSCPOG00000026940) #22	ENSCPOG00000014693 #23	PDE8A (ENSCPOG00000008287) #24	SLC28A1 (ENSCPOG00000008594) #25	ALPK3 (ENSCPOG00000008577) #26	ZNF592 (ENSCPOG00000008571) #27	SEC11A (ENSCPOG00000030953) #28	NMB (ENSCPOG00000012926) #29	WDR73 (ENSCPOG00000005574) #30	ZSCAN2 (ENSCPOG00000040461) #31	IQGAP1 (ENSCPOG00000013983) #33	CRTC3 (ENSCPOG00000007878) #34	BLM (ENSCPOG00000001761) #35	FURIN (ENSCPOG00000008665) #36	ENSCPOG00000026159 #37	MAN2A2 (ENSCPOG00000001765)
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.j #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Long-tailed chinchilla	MODERN SPECIES	123	EFL1 (ENSCLAG00000010155)	SAXO2 (ENSCLAG00000009494) #7	ADAMTSL3 (ENSCLAG00000012719) #8	SH3GL3 (ENSCLAG00000008885) #9	BNC1 (ENSCLAG00000008723) #10	HDGFL3 (ENSCLAG00000007952) #11	TM6SF1 (ENSCLAG00000009743) #12	BTBD1 (ENSCLAG00000010092) #13	C15orf40 (ENSCLAG00000013649) #14	ENSCLAG00000007371 #15	HOMER2 (ENSCLAG00000010174) #16	WHAMM (ENSCLAG00000007824) #17	FSD2 (ENSCLAG00000010590) #18	ENSCLAG00000009841 #20	AP3B2 (ENSCLAG00000012129) #21	CPEB1 (ENSCLAG00000009612) #22	ENSCLAG00000007573 #23	PDE8A (ENSCLAG00000009981) #24	SLC28A1 (ENSCLAG00000007489) #25	ALPK3 (ENSCLAG00000012376) #26	ZNF592 (ENSCLAG00000008752) #27	SEC11A (ENSCLAG00000011149) #28	NMB (ENSCLAG00000009114) #29	WDR73 (ENSCLAG00000011190) #30	ZSCAN2 (ENSCLAG00000008997) #31	IQGAP1 (ENSCLAG00000013145) #33	CRTC3 (ENSCLAG00000010334) #34	BLM (ENSCLAG00000012111) #35	FURIN (ENSCLAG00000011148) #36	FES (ENSCLAG00000009402) #37	ENSCLAG00000009690
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	43	SAXO2 (ENSODEG00000016229) #7	ADAMTSL3 (ENSODEG00000016051) #8	ENSODEG00000015686 #9	BNC1 (ENSODEG00000016067) #10	HDGFL3 (ENSODEG00000015530) #11	ENSODEG00000015680 #12	BTBD1 (ENSODEG00000016596) #13	C15orf40 (ENSODEG00000015621) #14	HOMER2 (ENSODEG00000016803) #16	WHAMM (ENSODEG00000016116) #17	FSD2 (ENSODEG00000016423) #18	ENSODEG00000015981 #20	ENSODEG00000020453	AP3B2 (ENSODEG00000015995) #21	ENSODEG00000015828	ENSODEG00000015788 #22	ENSODEG00000015975 #23	ENSODEG00000015692 #24	ENSODEG00000020408	SLC28A1 (ENSODEG00000015484) #25	ZNF592 (ENSODEG00000015261) #27	ENSODEG00000015702 #28	NMB (ENSODEG00000015582) #29	WDR73 (ENSODEG00000016666) #30	ZSCAN2 (ENSODEG00000015744) #31	IQGAP1 (ENSODEG00000016078) #33	ENSODEG00000015834	CRTC3 (ENSODEG00000015599) #34	ENSODEG00000020333	BLM (ENSODEG00000015373) #35	FURIN (ENSODEG00000016005) #36
Degu	MODERN SPECIES	48	AREL1 (ENSODEG00000015900)	LTBP2 (ENSODEG00000015966)	ENSODEG00000015593	NPC2 (ENSODEG00000015454)	SYNDIG1L (ENSODEG00000015191)	VRTN (ENSODEG00000015577)	ABCD4 (ENSODEG00000015190)	VSX2 (ENSODEG00000015486)	ENSODEG00000015046	ALDH6A1 (ENSODEG00000015807)	ENSODEG00000015055	ENTPD5 (ENSODEG00000015910)	COQ6 (ENSODEG00000016014)	FAM161B (ENSODEG00000014840)	ENSODEG00000015333	ENSODEG00000015245 #22	ENSODEG00000014976	ENSODEG00000020268	MIDEAS (ENSODEG00000015501)	ACOT6 (ENSODEG00000015420)	ENSODEG00000015224	ACOT4 (ENSODEG00000015555)	HEATR4 (ENSODEG00000015841)	RIOX1 (ENSODEG00000015583)	ENSODEG00000015906	PAPLN (ENSODEG00000016332)	PSEN1 (ENSODEG00000016888)	ENSODEG00000016847	ENSODEG00000015250	ZFYVE1 (ENSODEG00000015740)	DPF3 (ENSODEG00000015669)
Degu	MODERN SPECIES	144										ENSODEG00000000697	ENSODEG00000000850	ENSODEG00000000827	ENSODEG00000000810	KLHL4 (ENSODEG00000000734)	ENSODEG00000000679	ENSODEG00000000657 #22	DACH2 (ENSODEG00000000554)	ENSODEG00000018560	CHM (ENSODEG00000001208)	ENSODEG00000001180	POF1B (ENSODEG00000001140)	ZNF711 (ENSODEG00000001046)	ENSODEG00000001004	ENSODEG00000000990	APOOL (ENSODEG00000000970)	ENSODEG00000000866	HDX (ENSODEG00000000832)	RPS6KA6 (ENSODEG00000003590)	POU3F4 (ENSODEG00000019055)	ENSODEG00000003430	ENSODEG00000003422
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES		CARD11 (ENSHGLG00000015282)	ENSHGLG00000004410	ENSHGLG00000039944	ENSHGLG00000034557	SDK1 (ENSHGLG00000014065)	ENSHGLG00000033614	FOXK1 (ENSHGLG00000015239)	AP5Z1 (ENSHGLG00000008267)	RADIL (ENSHGLG00000011063)	WIPI2 (ENSHGLG00000006000)	SLC29A4 (ENSHGLG00000009672)	FBXL18 (ENSHGLG00000043138)	ACTB (ENSHGLG00000009651)	ENSHGLG00000050243	FSCN1 (ENSHGLG00000013742)	ENSHGLG00000018972 #22	RNF216 (ENSHGLG00000012663)	ENSHGLG00000015822	ENSHGLG00000048377	ENSHGLG00000008199	NUDT1 (ENSHGLG00000045244)	FTSJ2 (ENSHGLG00000011288)	MAD1L1 (ENSHGLG00000018905)	ELFN1 (ENSHGLG00000013940)	PSMG3 (ENSHGLG00000050465)	TMEM184A (ENSHGLG00000018951)	MAFK (ENSHGLG00000044774)	INTS1 (ENSHGLG00000015162)	MICALL2 (ENSHGLG00000014977)	UNCX (ENSHGLG00000013399)	ZFAND2A (ENSHGLG00000036206)
Naked mole-rat female	MODERN SPECIES	23	QPCT (ENSHGLG00000015088)	PRKD3 (ENSHGLG00000008644)	NDUFAF7 (ENSHGLG00000005543)	CEBPZ (ENSHGLG00000012838)	ENSHGLG00000009444	SULT6B1 (ENSHGLG00000007096)	ENSHGLG00000048150	EIF2AK2 (ENSHGLG00000013093)	ENSHGLG00000009502	HEATR5B (ENSHGLG00000014542)	STRN (ENSHGLG00000015041)	VIT (ENSHGLG00000017798)	ENSHGLG00000015023	ENSHGLG00000018264	ENSHGLG00000011555	ENSHGLG00000009146 #22	ENSHGLG00000013463	ENSHGLG00000007155	ENSHGLG00000006761	ENSHGLG00000014990	ENSHGLG00000046438	ENSHGLG00000044801	ENSHGLG00000013582	ENSHGLG00000011801	ENSHGLG00000006723	ENSHGLG00000045168	ENSHGLG00000017850	ENSHGLG00000047365	ENSHGLG00000013628	ENSHGLG00000034734	ENSHGLG00000033660
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000039706	ENSHGLG00000040242	ENSHGLG00000010664	TM6SF1 (ENSHGLG00000010470) #12	ENSHGLG00000050577	ENSHGLG00000037939	ENSHGLG00000033863	C15orf40 (ENSHGLG00000009721) #14	ENSHGLG00000035671 #15	ENSHGLG00000008953 #16	ENSHGLG00000008608 #17	FSD2 (ENSHGLG00000008273) #18	ENSHGLG00000034278 #20	ENSHGLG00000049162 #21	ENSHGLG00000007649 #21	ENSHGLG00000007319 #22	ENSHGLG00000006994 #23	ENSHGLG00000006244 #25	ENSHGLG00000034430 #26	ENSHGLG00000005823 #28	NMB (ENSHGLG00000005787) #29	WDR73 (ENSHGLG00000005731) #30	ENSHGLG00000042242 #31	ENSHGLG00000035870 #32	ENSHGLG00000008621 #33	ENSHGLG00000037319 ##34	CRTC3 (ENSHGLG00000015177) #34	ENSHGLG00000020616	BLM (ENSHGLG00000013231) #35	FURIN (ENSHGLG00000012848) #36	ENSHGLG00000035520
Naked mole-rat female	MODERN SPECIES	30	ENSHGLG00000039085	ENSHGLG00000005106	ENSHGLG00000037822	ENSHGLG00000005055	ENSHGLG00000049036	ENSHGLG00000050901	ENSHGLG00000033143	ENSHGLG00000020815	ENSHGLG00000046806	ENSHGLG00000042768	ENSHGLG00000041663	ENSHGLG00000039390	ENSHGLG00000035121	ENSHGLG00000012917	EHMT1 (ENSHGLG00000013813)	ENSHGLG00000045707 #22	ARRDC1 (ENSHGLG00000014897)	ZMYND19 (ENSHGLG00000035090)	DPH7 (ENSHGLG00000035731)	ENSHGLG00000015326	PNPLA7 (ENSHGLG00000042180)	NSMF (ENSHGLG00000011789)	ENTPD8 (ENSHGLG00000016797)	NOXA1 (ENSHGLG00000015301)	NRARP (ENSHGLG00000021302)	TOR4A (ENSHGLG00000015621)	NELFB (ENSHGLG00000015793)	ENSHGLG00000046256	FAM166A (ENSHGLG00000019237)	TUBB4B (ENSHGLG00000018708)	SLC34A3 (ENSHGLG00000012039)
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Muroidea	ANCESTRAL SPECIES	12	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Muroidea_A	ANCESTRAL SPECIES		ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT00940000167833
Chinese hamster chok1gshd	MODERN SPECIES	101	Efl1 (ENSCGRG00001010826)	Saxo2 (ENSCGRG00001002633) #7	Adamtsl3 (ENSCGRG00001021422) #8	Sh3gl3 (ENSCGRG00001023348) #9	Bnc1 (ENSCGRG00001020115) #10	Hdgfl3 (ENSCGRG00001013664) #11	Tm6sf1 (ENSCGRG00001019350) #12	Btbd1 (ENSCGRG00001015098) #13	3110040N11Rik (ENSCGRG00001022319) #14	ENSCGRG00001021992 #15	Homer2 (ENSCGRG00001005847) #16	Whamm (ENSCGRG00001016629) #17	Fsd2 (ENSCGRG00001017866) #18	BC048679 (ENSCGRG00001007625) #20	Ap3b2 (ENSCGRG00001011210) #21	Cpeb1 (ENSCGRG00001000358) #22	ENSCGRG00001021576 #23	Pde8a (ENSCGRG00001007946) #24	Slc28a1 (ENSCGRG00001010199) #25	Alpk3 (ENSCGRG00001019264) #26	Zfp592 (ENSCGRG00001014665) #27	Sec11a (ENSCGRG00001010049) #28	Nmb (ENSCGRG00001018421) #29	Wdr73 (ENSCGRG00001011561) #30	Zscan2 (ENSCGRG00001008496) #31	Iqgap1 (ENSCGRG00001018285) #33	Crtc3 (ENSCGRG00001022473) #34	Blm (ENSCGRG00001024897) #35	Furin (ENSCGRG00001017951) #36	Fes (ENSCGRG00001023097) #37	Man2a2 (ENSCGRG00001021335)
Golden Hamster	MODERN SPECIES	693	Efl1 (ENSMAUG00000010709)	Saxo2 (ENSMAUG00000008225) #7	Adamtsl3 (ENSMAUG00000003895) #8	Sh3gl3 (ENSMAUG00000008562) #9	Bnc1 (ENSMAUG00000000269) #10	Hdgfl3 (ENSMAUG00000020646) #11	Tm6sf1 (ENSMAUG00000019128) #12	Btbd1 (ENSMAUG00000018903) #13	3110040N11Rik (ENSMAUG00000018448) #14	ENSMAUG00000016043 #15	Homer2 (ENSMAUG00000014428) #16	Whamm (ENSMAUG00000000477) #17	Fsd2 (ENSMAUG00000010857) #18	BC048679 (ENSMAUG00000017314) #20	Ap3b2 (ENSMAUG00000007857) #21	Cpeb1 (ENSMAUG00000017763) #22	ENSMAUG00000017234 #23	Pde8a (ENSMAUG00000013036) #24	Slc28a1 (ENSMAUG00000015388) #25	Alpk3 (ENSMAUG00000011156) #26	Zfp592 (ENSMAUG00000020271) #27	Sec11a (ENSMAUG00000017735) #28	Nmb (ENSMAUG00000014323) #29	Wdr73 (ENSMAUG00000013122) #30	Zscan2 (ENSMAUG00000011116) #31	Iqgap1 (ENSMAUG00000008129) #33	Crtc3 (ENSMAUG00000013282) #34	Blm (ENSMAUG00000008953) #35	Furin (ENSMAUG00000020927) #36	Fes (ENSMAUG00000019394) #37	ENSMAUG00000017772
Cricetidae_B	ANCESTRAL SPECIES	33	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Northern American deer mouse	MODERN SPECIES		Saxo2 (ENSPEMG00000027083) #7	Adamtsl3 (ENSPEMG00000004470) #8	Sh3gl3 (ENSPEMG00000000312) #9	Bnc1 (ENSPEMG00000013631) #10	ENSPEMG00000018211 #11	Tm6sf1 (ENSPEMG00000013189) #12	ENSPEMG00000027262	Btbd1 (ENSPEMG00000017423) #13	3110040N11Rik (ENSPEMG00000018275) #14	ENSPEMG00000030285 #15	Homer2 (ENSPEMG00000015705) #16	Whamm (ENSPEMG00000013897) #17	Fsd2 (ENSPEMG00000004228) #18	BC048679 (ENSPEMG00000007757) #20	Ap3b2 (ENSPEMG00000006576) #21	Cpeb1 (ENSPEMG00000006743) #22	Rps17 (ENSPEMG00000015076) #23	Pde8a (ENSPEMG00000018076) #24	Slc28a1 (ENSPEMG00000009302) #25	Alpk3 (ENSPEMG00000020367) #26	Zfp592 (ENSPEMG00000013072) #27	Sec11a (ENSPEMG00000005567) #28	Nmb (ENSPEMG00000012184) #29	Wdr73 (ENSPEMG00000000198) #30	Zscan2 (ENSPEMG00000029278) #31	ENSPEMG00000018125 #33	Crtc3 (ENSPEMG00000000105) #34	Blm (ENSPEMG00000017348) #35	Furin (ENSPEMG00000010067) #36	Fes (ENSPEMG00000007790) #37	Man2a2 (ENSPEMG00000010591)
Prairie vole	MODERN SPECIES	9	Saxo2 (ENSMOCG00000015997) #7	Adamtsl3 (ENSMOCG00000021966) #8	Sh3gl3 (ENSMOCG00000010884) #9	Bnc1 (ENSMOCG00000000885) #10	Hdgfl3 (ENSMOCG00000010600) #11	Tm6sf1 (ENSMOCG00000007876) #12	Btbd1 (ENSMOCG00000002592) #13	3110040N11Rik (ENSMOCG00000021607) #14	ENSMOCG00000019940 #15	Homer2 (ENSMOCG00000015309) #16	Whamm (ENSMOCG00000000872) #17	Fsd2 (ENSMOCG00000015179) #18	ENSMOCG00000009343	BC048679 (ENSMOCG00000000682) #20	Ap3b2 (ENSMOCG00000007121) #21	Cpeb1 (ENSMOCG00000006902) #22	Rps17 (ENSMOCG00000018582) #23	Pde8a (ENSMOCG00000005246) #24	Slc28a1 (ENSMOCG00000008190) #25	Alpk3 (ENSMOCG00000021545) #26	Zfp592 (ENSMOCG00000019221) #27	Sec11a (ENSMOCG00000005585) #28	Nmb (ENSMOCG00000017100) #29	Wdr73 (ENSMOCG00000015177) #30	Zscan2 (ENSMOCG00000014314) #31	Iqgap1 (ENSMOCG00000008969) #33	ENSMOCG00000018309	Crtc3 (ENSMOCG00000013330) #34	Blm (ENSMOCG00000016367) #35	Furin (ENSMOCG00000010449) #36	Fes (ENSMOCG00000015972) #37
Murinae	ANCESTRAL SPECIES		ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Mus	ANCESTRAL SPECIES		ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Mus_A	ANCESTRAL SPECIES	1	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00860000135616	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Mus_B	ANCESTRAL SPECIES		ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00860000135616	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.y.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Mouse	MODERN SPECIES	16	Efl1 (ENSMUSG00000038563)	Saxo2 (ENSMUSG00000038570) #7	Adamtsl3 (ENSMUSG00000070469) #8	Sh3gl3 (ENSMUSG00000030638) #9	Bnc1 (ENSMUSG00000025105) #10	Hdgfl3 (ENSMUSG00000025104) #11	Tm6sf1 (ENSMUSG00000038623) #12	Btbd1 (ENSMUSG00000025103) #13	3110040N11Rik (ENSMUSG00000025102) #14	Ramac (ENSMUSG00000038646) #15	Homer2 (ENSMUSG00000025813) #16	Whamm (ENSMUSG00000045795) #17	Fsd2 (ENSMUSG00000038663) #18	BC048679 (ENSMUSG00000061877) #20	Ap3b2 (ENSMUSG00000062444) #21	Cpeb1 (ENSMUSG00000025586) #22	Rps17 (ENSMUSG00000061787) #23	Pde8a (ENSMUSG00000025584) #24	Slc28a1 (ENSMUSG00000025726) #25	Alpk3 (ENSMUSG00000038763) #26	Zfp592 (ENSMUSG00000005621) #27	Sec11a (ENSMUSG00000025724) #28	Nmb (ENSMUSG00000025723) #29	Wdr73 (ENSMUSG00000025722) #30	Zscan2 (ENSMUSG00000038797) #31	Iqgap1 (ENSMUSG00000030536) #33	Crtc3 (ENSMUSG00000030527) #34	Blm (ENSMUSG00000030528) #35	Furin (ENSMUSG00000030530) #36	Fes (ENSMUSG00000053158) #37	Man2a2 (ENSMUSG00000038886)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00860000135616	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.y.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
spretus	MODERN SPECIES	16	Adamtsl3 (MGP_SPRETEiJ_G0031036) #8	Sh3gl3 (MGP_SPRETEiJ_G0031035) #9	Bnc1 (MGP_SPRETEiJ_G0031034) #10	Hdgfl3 (MGP_SPRETEiJ_G0031033) #11	Tm6sf1 (MGP_SPRETEiJ_G0031032) #12	MGP_SPRETEiJ_G0031031	Btbd1 (MGP_SPRETEiJ_G0031030) #13	3110040N11Rik (MGP_SPRETEiJ_G0031029) #14	Ramac (MGP_SPRETEiJ_G0031028) #15	Homer2 (MGP_SPRETEiJ_G0031027) #16	Whamm (MGP_SPRETEiJ_G0031026) #17	Fsd2 (MGP_SPRETEiJ_G0031025) #18	MGP_SPRETEiJ_G0031024	MGP_SPRETEiJ_G0031023 #20	Ap3b2 (MGP_SPRETEiJ_G0031022) #21	Cpeb1 (MGP_SPRETEiJ_G0031021) #22	Rps17 (MGP_SPRETEiJ_G0031020) #23	Pde8a (MGP_SPRETEiJ_G0031019) #24	Slc28a1 (MGP_SPRETEiJ_G0031018) #25	MGP_SPRETEiJ_G0031017 #26	Zfp592 (MGP_SPRETEiJ_G0031016) #27	Sec11a (MGP_SPRETEiJ_G0031015) #28	Nmb (MGP_SPRETEiJ_G0031014) #29	Wdr73 (MGP_SPRETEiJ_G0031013) #30	Zscan2 (MGP_SPRETEiJ_G0031012) #31	Iqgap1 (MGP_SPRETEiJ_G0031011) #33	Crtc3 (MGP_SPRETEiJ_G0031010) #34	Blm (MGP_SPRETEiJ_G0031009) #35	Furin (MGP_SPRETEiJ_G0031008) #36	Fes (MGP_SPRETEiJ_G0031007) #37	Man2a2 (MGP_SPRETEiJ_G0031006)
Steppe mouse	MODERN SPECIES	2869												ENSMSIG00000001415 #17	Fsd2 (ENSMSIG00000001428) #18	BC048679 (ENSMSIG00000001486) #20	Ap3b2 (ENSMSIG00000001563) #21	ENSMSIG00000001686 #22	ENSMSIG00000001809 #23	Pde8a (ENSMSIG00000001853) #24	ENSMSIG00000001994	Slc28a1 (ENSMSIG00000002011) #25	ENSMSIG00000002153	ENSMSIG00000002175	Alpk3 (ENSMSIG00000002205) #26	Zfp592 (ENSMSIG00000002322) #27	Sec11a (ENSMSIG00000002391) #28	Nmb (ENSMSIG00000002520) #29	Wdr73 (ENSMSIG00000002555) #30	Zscan2 (ENSMSIG00000002584) #31	Iqgap1 (ENSMSIG00000002628) #33	Crtc3 (ENSMSIG00000002839) #34	ENSMSIG00000002919
Ryukyu mouse	MODERN SPECIES	16	Adamtsl3 (MGP_CAROLIEiJ_G0029934) #8	Sh3gl3 (MGP_CAROLIEiJ_G0029933) #9	Bnc1 (MGP_CAROLIEiJ_G0029932) #10	Hdgfl3 (MGP_CAROLIEiJ_G0029931) #11	Tm6sf1 (MGP_CAROLIEiJ_G0029930) #12	MGP_CAROLIEiJ_G0029929	Btbd1 (MGP_CAROLIEiJ_G0029928) #13	3110040N11Rik (MGP_CAROLIEiJ_G0029927) #14	MGP_CAROLIEiJ_G0029926 #15	MGP_CAROLIEiJ_G0029925 #15	Homer2 (MGP_CAROLIEiJ_G0029924) #16	Whamm (MGP_CAROLIEiJ_G0029923) #17	Fsd2 (MGP_CAROLIEiJ_G0029922) #18	BC048679 (MGP_CAROLIEiJ_G0029921) #20	Ap3b2 (MGP_CAROLIEiJ_G0029920) #21	Cpeb1 (MGP_CAROLIEiJ_G0029919) #22	Rps17 (MGP_CAROLIEiJ_G0029918) #23	Pde8a (MGP_CAROLIEiJ_G0029917) #24	Slc28a1 (MGP_CAROLIEiJ_G0029916) #25	Alpk3 (MGP_CAROLIEiJ_G0029915) #26	Zfp592 (MGP_CAROLIEiJ_G0029914) #27	MGP_CAROLIEiJ_G0029913 #28	Nmb (MGP_CAROLIEiJ_G0029912) #29	MGP_CAROLIEiJ_G0029911 #30	Zscan2 (MGP_CAROLIEiJ_G0029910) #31	Iqgap1 (MGP_CAROLIEiJ_G0029909) #33	Crtc3 (MGP_CAROLIEiJ_G0029908) #34	Blm (MGP_CAROLIEiJ_G0029907) #35	Furin (MGP_CAROLIEiJ_G0029906) #36	Fes (MGP_CAROLIEiJ_G0029905) #37	Man2a2 (MGP_CAROLIEiJ_G0029904)
Shrew mouse	MODERN SPECIES		Saxo2 (MGP_PahariEiJ_G0013156) #7	Adamtsl3 (MGP_PahariEiJ_G0013155) #8	Sh3gl3 (MGP_PahariEiJ_G0013154) #9	Bnc1 (MGP_PahariEiJ_G0013153) #10	Hdgfl3 (MGP_PahariEiJ_G0013152) #11	Tm6sf1 (MGP_PahariEiJ_G0013151) #12	Btbd1 (MGP_PahariEiJ_G0013150) #13	3110040N11Rik (MGP_PahariEiJ_G0013149) #14	MGP_PahariEiJ_G0013148 #15	MGP_PahariEiJ_G0013147 #15	Homer2 (MGP_PahariEiJ_G0013146) #16	Whamm (MGP_PahariEiJ_G0013145) #17	Fsd2 (MGP_PahariEiJ_G0013144) #18	BC048679 (MGP_PahariEiJ_G0013143) #20	Ap3b2 (MGP_PahariEiJ_G0013142) #21	Cpeb1 (MGP_PahariEiJ_G0013141) #22	Rps17 (MGP_PahariEiJ_G0013140) #23	Pde8a (MGP_PahariEiJ_G0013139) #24	Slc28a1 (MGP_PahariEiJ_G0013138) #25	Alpk3 (MGP_PahariEiJ_G0013137) #26	Zfp592 (MGP_PahariEiJ_G0013136) #27	MGP_PahariEiJ_G0013135 #28	Nmb (MGP_PahariEiJ_G0013134) #29	Wdr73 (MGP_PahariEiJ_G0013133) #30	Zscan2 (MGP_PahariEiJ_G0013132) #31	Iqgap1 (MGP_PahariEiJ_G0013131) #33	Crtc3 (MGP_PahariEiJ_G0013130) #34	Blm (MGP_PahariEiJ_G0013129) #35	Furin (MGP_PahariEiJ_G0013128) #36	Fes (MGP_PahariEiJ_G0013127) #37	Man2a2 (MGP_PahariEiJ_G0013126)
Rat	MODERN SPECIES		Efl1 (ENSRNOG00000032723)	Saxo2 (ENSRNOG00000026296) #7	ENSRNOG00000062620	Adamtsl3 (ENSRNOG00000010840) #8	Sh3gl3 (ENSRNOG00000019776) #9	Bnc1 (ENSRNOG00000019770) #10	Hdgfl3 (ENSRNOG00000019740) #11	Tm6sf1 (ENSRNOG00000019662) #12	Btbd1 (ENSRNOG00000019529) #13	C1h15orf40 (ENSRNOG00000052273) #14	Ramac (ENSRNOG00000019426) #15	Homer2 (ENSRNOG00000061450) #16	Whamm (ENSRNOG00000028113) #17	Fsd2 (ENSRNOG00000019278) #18	LOC100360933 (ENSRNOG00000036981) #20	Cpeb1 (ENSRNOG00000019161) #22	LOC100365810 (ENSRNOG00000019106) #23	Pde8a (ENSRNOG00000019005) #24	Slc28a1 (ENSRNOG00000018940) #25	Alpk3 (ENSRNOG00000011659) #26	Zfp592 (ENSRNOG00000060206) #27	Sec11a (ENSRNOG00000011029) #28	Nmb (ENSRNOG00000011011) #29	Wdr73 (ENSRNOG00000010664) #30	Zscan2 (ENSRNOG00000022164) #31	Iqgap1 (ENSRNOG00000012002) #33	ENSRNOG00000070579	Crtc3 (ENSRNOG00000011975) #34	Blm (ENSRNOG00000011213) #35	Furin (ENSRNOG00000011352) #36	Fes (ENSRNOG00000011683) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	988														BC048679 (ENSNGAG00000014913) #20	Ap3b2 (ENSNGAG00000003087) #21	Cpeb1 (ENSNGAG00000011985) #22	Rps17 (ENSNGAG00000010134) #23	Pde8a (ENSNGAG00000021058) #24
Lesser Egyptian jerboa	MODERN SPECIES	65	Efl1 (ENSJJAG00000018598)	Saxo2 (ENSJJAG00000024098) #7	Adamtsl3 (ENSJJAG00000004479) #8	Sh3gl3 (ENSJJAG00000002927) #9	Bnc1 (ENSJJAG00000015614) #10	Hdgfl3 (ENSJJAG00000013802) #11	Tm6sf1 (ENSJJAG00000011353) #12	Btbd1 (ENSJJAG00000012641) #13	3110040N11Rik (ENSJJAG00000024341) #14	ENSJJAG00000003727 #15	Homer2 (ENSJJAG00000018832) #16	Whamm (ENSJJAG00000013424) #17	Fsd2 (ENSJJAG00000003744) #18	BC048679 (ENSJJAG00000018988) #20	Ap3b2 (ENSJJAG00000003019) #21	Cpeb1 (ENSJJAG00000015049) #22	Rps17 (ENSJJAG00000020936) #23	Pde8a (ENSJJAG00000011944) #24	Slc28a1 (ENSJJAG00000023517) #25	Alpk3 (ENSJJAG00000008305) #26	Zfp592 (ENSJJAG00000011806) #27	ENSJJAG00000020040 #28	Nmb (ENSJJAG00000008602) #29	Wdr73 (ENSJJAG00000015926) #30	Zscan2 (ENSJJAG00000022881) #31	Iqgap1 (ENSJJAG00000023641) #33	Crtc3 (ENSJJAG00000021384) #34	Blm (ENSJJAG00000016322) #35	Furin (ENSJJAG00000004412) #36	ENSJJAG00000024339 #37	Man2a2 (ENSJJAG00000001354)
Kangaroo rat	MODERN SPECIES	334	Tmc3 (ENSDORG00000023414)	Efl1 (ENSDORG00000000719)	ENSDORG00000024338	Adamtsl3 (ENSDORG00000025263) #8	Sh3gl3 (ENSDORG00000013991) #9	Bnc1 (ENSDORG00000001268) #10	Hdgfl3 (ENSDORG00000007105) #11	Tm6sf1 (ENSDORG00000008925) #12	Btbd1 (ENSDORG00000009404) #13	3110040N11Rik (ENSDORG00000029696) #14	ENSDORG00000012953 #15	Homer2 (ENSDORG00000011842) #16	ENSDORG00000011838 #17	Fsd2 (ENSDORG00000007252) #18	Ap3b2 (ENSDORG00000014193) #21	Cpeb1 (ENSDORG00000009040) #22	ENSDORG00000026945 ##23	Pde8a (ENSDORG00000029160) #24	Slc28a1 (ENSDORG00000012052) #25	Alpk3 (ENSDORG00000027311) #26	Zfp592 (ENSDORG00000028457) #27	ENSDORG00000013814 #28	Wdr73 (ENSDORG00000013811) #30	Iqgap1 (ENSDORG00000008807) #33	Crtc3 (ENSDORG00000010696) #34	ENSDORG00000010966	Blm (ENSDORG00000011033) #35	Furin (ENSDORG00000014054) #36	ENSDORG00000014057 #37	ENSDORG00000014061	ENSDORG00000030197
Lagomorpha	ANCESTRAL SPECIES	74							ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000012913.b #12	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163677.a.b.b	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Pika	MODERN SPECIES	4729																CPEB1 (ENSOPRG00000018614) #22
Rabbit	MODERN SPECIES	471												FSD2 (ENSOCUG00000026686) #18	ENSOCUG00000035446	ENSOCUG00000023296 #20	AP3B2 (ENSOCUG00000006449) #21	CPEB1 (ENSOCUG00000026694) #22	ENSOCUG00000006370 #23	PDE8A (ENSOCUG00000016908) #24	SLC28A1 (ENSOCUG00000006006) #25	ALPK3 (ENSOCUG00000005991) #26	ZNF592 (ENSOCUG00000005980) #27	SEC11A (ENSOCUG00000008205) #28	ENSOCUG00000017866 #29	WDR73 (ENSOCUG00000017864) #30	ZSCAN2 (ENSOCUG00000034254) #31	ENSOCUG00000007308	IQGAP1 (ENSOCUG00000000146) #33	ENSOCUG00000031499	CRTC3 (ENSOCUG00000014304) #34	BLM (ENSOCUG00000013969) #35	FURIN (ENSOCUG00000024969) #36
Primates	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Haplorrhini	ANCESTRAL SPECIES	36	ENSGT00550000074806	ENSGT01100000266939	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Simiiformes	ANCESTRAL SPECIES	28	ENSGT00550000074806	ENSGT01100000266939	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.j.a.d ##23	ENSGT00910000144587.a.b	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00390000011515.c.b	ENSGT00940000154146.a	ENSGT00910000147506	ENSGT00910000147443
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.j.a.d ##23	ENSGT00910000144587.a.b	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00390000011515.c.b	ENSGT00940000154146.a	ENSGT00910000147506	ENSGT00910000147443
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.b #23	ENSGT00910000144587.a.b	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00910000147506	ENSGT00910000147443	ENSGT00950000182983.B.b
Cercopithecinae_b	ANCESTRAL SPECIES	47	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.a.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00910000147506	ENSGT00910000147443	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00950000183498
Olive baboon	MODERN SPECIES	17	ENSPANG00000039548	AGBL1 (ENSPANG00000011754)	ENSPANG00000040249	ENSPANG00000045098	KLHL25 (ENSPANG00000005906)	AKAP13 (ENSPANG00000005909)	ENSPANG00000041106	ZSCAN2 (ENSPANG00000000536) #31	WDR73 (ENSPANG00000005911) #30	NMB (ENSPANG00000034578) #29	ENSPANG00000011756 #28	ZNF592 (ENSPANG00000022572) #27	ALPK3 (ENSPANG00000022573) #26	SLC28A1 (ENSPANG00000022574) #25	PDE8A (ENSPANG00000020640) #24	CPEB1 (ENSPANG00000018537) #22	AP3B2 (ENSPANG00000000971) #21	FSD2 (ENSPANG00000000970) #18	WHAMM (ENSPANG00000011757) #17	HOMER2 (ENSPANG00000020641) #16	ENSPANG00000020645 #15	C15orf40 (ENSPANG00000020644) #14	BTBD1 (ENSPANG00000020643) #13	TM6SF1 (ENSPANG00000020642) #12	HDGFL3 (ENSPANG00000015608) #11	BNC1 (ENSPANG00000015607) #10	ENSPANG00000021055	TTLL13 (ENSPANG00000024125)	GDPGP1 (ENSPANG00000007726)	CIB1 (ENSPANG00000021466)	SEMA4B (ENSPANG00000011175)
Cercopithecinae_d	ANCESTRAL SPECIES	178	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.a.a #23
Sooty mangabey	MODERN SPECIES	329	ENSCATG00000039517 #7	ADAMTSL3 (ENSCATG00000032031) #8	SH3GL3 (ENSCATG00000011062) #9	BNC1 (ENSCATG00000031703) #10	HDGFL3 (ENSCATG00000033269) #11	TM6SF1 (ENSCATG00000002038) #12	ENSCATG00000015544	BTBD1 (ENSCATG00000035748) #13	C15orf40 (ENSCATG00000008803) #14	ENSCATG00000033049 #15	HOMER2 (ENSCATG00000036477) #16	WHAMM (ENSCATG00000030689) #17	FSD2 (ENSCATG00000031685) #18	AP3B2 (ENSCATG00000030940) #21	ENSCATG00000000421	CPEB1 (ENSCATG00000026532) #22	ENSCATG00000033951 #23
Drill	MODERN SPECIES	1359				SH3GL3 (ENSMLEG00000025353) #9	BNC1 (ENSMLEG00000027195) #10	HDGFL3 (ENSMLEG00000028235) #11	TM6SF1 (ENSMLEG00000029932) #12	ENSMLEG00000026738	ENSMLEG00000037715 #13	C15orf40 (ENSMLEG00000033171) #14	ENSMLEG00000041885 #15	HOMER2 (ENSMLEG00000019414) #16	WHAMM (ENSMLEG00000000060) #17	FSD2 (ENSMLEG00000008194) #18	AP3B2 (ENSMLEG00000033235) #21	CPEB1 (ENSMLEG00000043483) #22	ENSMLEG00000028304 #23
Macaca	ANCESTRAL SPECIES	1	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.b #23	ENSGT00910000144587.a.b	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.n #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00910000147443	ENSGT00950000182983.B.b	ENSGT00940000160936
Pig-tailed macaque	MODERN SPECIES	253	ENSMNEG00000042570	ENSMNEG00000028308 #7	ADAMTSL3 (ENSMNEG00000032723) #8	SH3GL3 (ENSMNEG00000026525) #9	BNC1 (ENSMNEG00000014987) #10	HDGFL3 (ENSMNEG00000027998) #11	TM6SF1 (ENSMNEG00000032549) #12	ENSMNEG00000034145	BTBD1 (ENSMNEG00000000819) #13	C15orf40 (ENSMNEG00000044607) #14	ENSMNEG00000031101 #15	HOMER2 (ENSMNEG00000034311) #16	WHAMM (ENSMNEG00000033033) #17	FSD2 (ENSMNEG00000035344) #18	AP3B2 (ENSMNEG00000028420) #21	CPEB1 (ENSMNEG00000035259) #22	ENSMNEG00000030101 #23
Macaca_a	ANCESTRAL SPECIES	2	ENSGT01010000222921.b	ENSGT00550000074806.jb.a	ENSGT00390000007252.d.b.a.a #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.a.a.b.a.b.b	ENSGT00940000156756 #13	ENSGT00940000157324 #16	ENSGT00390000011190 #15	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00910000144587.a.b	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.n #26	ENSGT00390000015600.c.a.f.d #28	ENSGT00940000158534.d.m #26	ENSGT00940000158357 #27	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000169036.b	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936
Rhesus	MODERN SPECIES	17	ADAMTSL3 (ENSMMUG00000013670) #8	ENSMMUG00000053346	SH3GL3 (ENSMMUG00000013669) #9	BNC1 (ENSMMUG00000008188) #10	HDGFL3 (ENSMMUG00000009087) #11	TM6SF1 (ENSMMUG00000009084) #12	ENSMMUG00000062266	ENSMMUG00000062559	BTBD1 (ENSMMUG00000041714) #13	HOMER2 (ENSMMUG00000008297) #16	C7H15orf40 (ENSMMUG00000015890)	RAMAC (ENSMMUG00000050617) #15	WHAMM (ENSMMUG00000003498) #17	FSD2 (ENSMMUG00000019138) #18	AP3B2 (ENSMMUG00000000617) #21	RPS17 (ENSMMUG00000011328) #22	ENSMMUG00000063204	ENSMMUG00000056767	PDE8A (ENSMMUG00000019838) #24	ENSMMUG00000056737	ENSMMUG00000049563	SLC28A1 (ENSMMUG00000016772) #25	ZNF592 (ENSMMUG00000010432) #26	SEC11A (ENSMMUG00000011486) #28	NMB (ENSMMUG00000045634) #29	WDR73 (ENSMMUG00000002403) #30	ENSMMUG00000053640	ZSCAN2 (ENSMMUG00000022080) #31	ENSMMUG00000058850	AKAP13 (ENSMMUG00000011251)	KLHL25 (ENSMMUG00000050063)
Vervet Monkey	MODERN SPECIES	21	ENSCSAG00000017324	ENSCSAG00000017313	SAXO2 (ENSCSAG00000017311) #7	ADAMTSL3 (ENSCSAG00000017309) #8	SH3GL3 (ENSCSAG00000017305) #9	BNC1 (ENSCSAG00000017303) #10	HDGFL3 (ENSCSAG00000017301) #11	TM6SF1 (ENSCSAG00000017300) #12	BTBD1 (ENSCSAG00000017298) #13	ENSCSAG00000000370	C15orf40 (ENSCSAG00000017296) #14	HOMER2 (ENSCSAG00000017295) #16	WHAMM (ENSCSAG00000017293) #17	FSD2 (ENSCSAG00000017289) #18	AP3B2 (ENSCSAG00000017286) #21	CPEB1 (ENSCSAG00000017282) #22	ENSCSAG00000017280 ##23	ENSCSAG00000017277	PDE8A (ENSCSAG00000017271) #24	SLC28A1 (ENSCSAG00000017257) #25	ALPK3 (ENSCSAG00000017246) #26	ZNF592 (ENSCSAG00000017243) #27	SEC11A (ENSCSAG00000017241) #28	NMB (ENSCSAG00000017240) #29	WDR73 (ENSCSAG00000017238) #30	ZSCAN2 (ENSCSAG00000017237) #31	ENSCSAG00000017231	AKAP13 (ENSCSAG00000017226)	ENSCSAG00000000369	KLHL25 (ENSCSAG00000000368)	AGBL1 (ENSCSAG00000017210)
Rhinopithecus	ANCESTRAL SPECIES	473							ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.b #23
Golden snub-nosed monkey	MODERN SPECIES	916							HDGFL3 (ENSRROG00000042788) #11	TM6SF1 (ENSRROG00000045046) #12	BTBD1 (ENSRROG00000032531) #13	C15orf40 (ENSRROG00000030180) #14	ENSRROG00000032118 #15	HOMER2 (ENSRROG00000043077) #16	WHAMM (ENSRROG00000045228) #17	FSD2 (ENSRROG00000042297) #18	AP3B2 (ENSRROG00000029543) #21	CPEB1 (ENSRROG00000036020) #22	RPS17 (ENSRROG00000001263) #23
Black snub-nosed monkey	MODERN SPECIES	1197						HDGFL3 (ENSRBIG00000036412) #11	TM6SF1 (ENSRBIG00000041065) #12	ENSRBIG00000003329	BTBD1 (ENSRBIG00000037897) #13	C15orf40 (ENSRBIG00000034434) #14	ENSRBIG00000039782 #15	HOMER2 (ENSRBIG00000038774) #16	WHAMM (ENSRBIG00000019475) #17	FSD2 (ENSRBIG00000035720) #18	AP3B2 (ENSRBIG00000042295) #21	CPEB1 (ENSRBIG00000007666) #22	RPS17 (ENSRBIG00000036823) #23
Hominoidea	ANCESTRAL SPECIES	28	ENSGT00390000007252.d.a.b #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.m.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156839.bb.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400
Hominidae	ANCESTRAL SPECIES	27	ENSGT00390000007252.d.a.b #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.m.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156839.bb.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.b #23	ENSGT00550000074806.jb.b	ENSGT00390000007252.d.a.a #7	ENSGT00910000144587	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00390000011515.c.b.b	ENSGT00940000154146.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	32	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000154530.r.b.a.a.b.a	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.m.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156839.bb.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23
Homo/Pan group	ANCESTRAL SPECIES	31	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00940000154530.r.b.a.a.b.a	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.m.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156839.bb.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23
Pan	ANCESTRAL SPECIES	39	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147440	ENSGT00390000012913.b #12	ENSGT00390000013208.y.a.b	ENSGT00940000154530.r.b.a.a.b.a	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.m.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156839.bb.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.lb #23
Bonobo	MODERN SPECIES	6	SH3GL3 (ENSPPAG00000006912) #9	BNC1 (ENSPPAG00000011672) #10	HDGFL3 (ENSPPAG00000040199) #11	ENSPPAG00000033304	TM6SF1 (ENSPPAG00000040733) #12	ENSPPAG00000012238	ENSPPAG00000033798	BTBD1 (ENSPPAG00000034480) #13	ENSPPAG00000019101 #14	ENSPPAG00000042316 #15	HOMER2 (ENSPPAG00000034295) #16	WHAMM (ENSPPAG00000038419) #17	FSD2 (ENSPPAG00000040345) #18	ENSPPAG00000026547	AP3B2 (ENSPPAG00000036412) #21	CPEB1 (ENSPPAG00000006926) #22	ENSPPAG00000039993 #23	TMC3 (ENSPPAG00000042026)	STARD5 (ENSPPAG00000040931)	IL16 (ENSPPAG00000036833)	CFAP161 (ENSPPAG00000041335)	ENSPPAG00000028765	ENSPPAG00000015510	MESD (ENSPPAG00000013103)	CEMIP (ENSPPAG00000039274)	ENSPPAG00000010874	ENSPPAG00000002668	FAH (ENSPPAG00000043437)	BCL2A1 (ENSPPAG00000020907)	ENSPPAG00000035670	ENSPPAG00000031138
Chimpanzee	MODERN SPECIES	6	SH3GL3 (ENSPTRG00000007393) #9	BNC1 (ENSPTRG00000007392) #10	HDGFL3 (ENSPTRG00000007391) #11	ENSPTRG00000046104	TM6SF1 (ENSPTRG00000007390) #12	ENSPTRG00000040903	ENSPTRG00000048161	BTBD1 (ENSPTRG00000007389) #13	C15H15orf40 (ENSPTRG00000007388) #14	RAMAC (ENSPTRG00000007387) #15	HOMER2 (ENSPTRG00000007385) #16	WHAMM (ENSPTRG00000007384) #17	FSD2 (ENSPTRG00000007383) #18	ENSPTRG00000052688	AP3B2 (ENSPTRG00000007381) #21	CPEB1 (ENSPTRG00000034062) #22	RPS17 (ENSPTRG00000007379) #23	SAXO2 (ENSPTRG00000050705) #7	EFL1 (ENSPTRG00000007374)	MEX3B (ENSPTRG00000007373)	ENSPTRG00000046083	TMC3 (ENSPTRG00000007371)	STARD5 (ENSPTRG00000007370)	IL16 (ENSPTRG00000007369)	CFAP161 (ENSPTRG00000007368)	ENSPTRG00000044610	MESD (ENSPTRG00000007366)	CEMIP (ENSPTRG00000007365)	ABHD17C (ENSPTRG00000007364)	ARNT2 (ENSPTRG00000007363)	CTXND1 (ENSPTRG00000050540)
Human	MODERN SPECIES	6	WDR73 (ENSG00000177082) #30	ZSCAN2 (ENSG00000176371) #31	GOLGA6L4 (ENSG00000184206)	ADAMTSL3 (ENSG00000156218) #8	SH3GL3 (ENSG00000140600) #9	BNC1 (ENSG00000169594) #10	HDGFL3 (ENSG00000166503) #11	TM6SF1 (ENSG00000136404) #12	BTBD1 (ENSG00000064726) #13	C15orf40 (ENSG00000169609) #14	RAMAC (ENSG00000169612) #15	HOMER2 (ENSG00000103942) #16	WHAMM (ENSG00000156232) #17	FSD2 (ENSG00000186628) #18	AP3B2 (ENSG00000103723) #21	CPEB1 (ENSG00000214575) #22	ENSG00000260836	RPS17 (ENSG00000182774) #23	GOLGA6L9 (ENSG00000197978)	GOLGA6L10 (ENSG00000278662)	SAXO2 (ENSG00000188659) #7	EFL1 (ENSG00000140598)	MEX3B (ENSG00000183496)	TMC3 (ENSG00000188869)	STARD5 (ENSG00000172345)	IL16 (ENSG00000172349)	CFAP161 (ENSG00000156206)	ENSG00000288625	TLNRD1 (ENSG00000140406)	MESD (ENSG00000117899)	CEMIP (ENSG00000103888)
Gorilla	MODERN SPECIES	6	ENSGGOG00000012325	ADAMTSL3 (ENSGGOG00000012200) #8	SH3GL3 (ENSGGOG00000000478) #9	BNC1 (ENSGGOG00000006610) #10	ENSGGOG00000002068 #11	TM6SF1 (ENSGGOG00000015013) #12	ENSGGOG00000036519	BTBD1 (ENSGGOG00000009446) #13	ENSGGOG00000023062 #14	ENSGGOG00000022754 #15	HOMER2 (ENSGGOG00000015739) #16	WHAMM (ENSGGOG00000000283) #17	FSD2 (ENSGGOG00000012365) #18	ENSGGOG00000022012	AP3B2 (ENSGGOG00000006777) #21	ENSGGOG00000003268 #22	ENSGGOG00000039339 #23	ENSGGOG00000023506	ENSGGOG00000026137 #7	EFL1 (ENSGGOG00000005017)	MEX3B (ENSGGOG00000000597)	TMC3 (ENSGGOG00000005145)	STARD5 (ENSGGOG00000005142)	IL16 (ENSGGOG00000005128)	CFAP161 (ENSGGOG00000007062)	ENSGGOG00000022265	MESD (ENSGGOG00000027583)	CEMIP (ENSGGOG00000004531)	ABHD17C (ENSGGOG00000012949)	ENSGGOG00000012245	CTXND1 (ENSGGOG00000040552)
Orangutan	MODERN SPECIES	6	ENSPPYG00000006729	ENSPPYG00000006744	ENSPPYG00000041459	ADAMTSL3 (ENSPPYG00000006742) #8	SH3GL3 (ENSPPYG00000006741) #9	BNC1 (ENSPPYG00000040401) #10	HDGFL3 (ENSPPYG00000006739) #11	TM6SF1 (ENSPPYG00000041172) #12	BTBD1 (ENSPPYG00000006738) #13	ENSPPYG00000018203	ENSPPYG00000006737 #14	RAMAC (ENSPPYG00000006736) #15	HOMER2 (ENSPPYG00000006735) #16	FSD2 (ENSPPYG00000006733) #18	AP3B2 (ENSPPYG00000006890) #21	CPEB1 (ENSPPYG00000006889) #22	ENSPPYG00000006888 #23	ENSPPYG00000030954	PDE8A (ENSPPYG00000006885) #24	SLC28A1 (ENSPPYG00000006884) #25	ENSPPYG00000029615	ENSPPYG00000031798 #26	ZNF592 (ENSPPYG00000035797) #27	SEC11A (ENSPPYG00000006881) #28	ENSPPYG00000036271 #29	WDR73 (ENSPPYG00000006879) #30	ENSPPYG00000039060	ZSCAN2 (ENSPPYG00000006877) #31	ENSPPYG00000006873	AKAP13 (ENSPPYG00000006745)	KLHL25 (ENSPPYG00000006746)
Gibbon	MODERN SPECIES	21	ADAMTSL3 (ENSNLEG00000010693) #8	SH3GL3 (ENSNLEG00000010797) #9	BNC1 (ENSNLEG00000010826) #10	HDGFL3 (ENSNLEG00000010840) #11	TM6SF1 (ENSNLEG00000010867) #12	ENSNLEG00000030773	ENSNLEG00000010920 #13	ENSNLEG00000030904	ENSNLEG00000010930 #14	ENSNLEG00000010942 #15	HOMER2 (ENSNLEG00000010953) #16	ENSNLEG00000010962 #17	FSD2 (ENSNLEG00000010971) #18	ENSNLEG00000033316	AP3B2 (ENSNLEG00000011002) #21	CPEB1 (ENSNLEG00000011018) #22	ENSNLEG00000029963	ENSNLEG00000031165 #23	PDE8A (ENSNLEG00000011058) #24	SLC28A1 (ENSNLEG00000011198) #25	ENSNLEG00000011262 #26	ZNF592 (ENSNLEG00000011267) #27	ENSNLEG00000028435 #28	NMB (ENSNLEG00000011294) #29	WDR73 (ENSNLEG00000011299) #30	ENSNLEG00000018883	ZSCAN2 (ENSNLEG00000011329) #31	AKAP13 (ENSNLEG00000011353)	KLHL25 (ENSNLEG00000011390)	AGBL1 (ENSNLEG00000011396)	NTRK3 (ENSNLEG00000011410)
Platyrrhini	ANCESTRAL SPECIES	38	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.l.a #15	ENSGT00390000011190.l.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.b #23	ENSGT00390000006548.b.k.mb.a.a.a.a.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400
Cebidae	ANCESTRAL SPECIES	36	ENSGT01100000266939	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.l.a #15	ENSGT00390000011190.l.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.b #23	ENSGT00390000006548.b.k.mb.a.a.a.a.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000160936	ENSGT00940000155645	ENSGT00390000015400
Cebidae_a	ANCESTRAL SPECIES	66	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00910000147777	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190.l.a #15	ENSGT00390000011190.l.b #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.mb.a.a.a.a.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000154146.a	ENSGT00950000182983.B.b	ENSGT00940000155645	ENSGT00390000015400	ENSGT00390000016068	ENSGT00390000005224
Capuchin	MODERN SPECIES	295	ENSCCAG00000025764	ADAMTSL3 (ENSCCAG00000027499) #8	SH3GL3 (ENSCCAG00000031867) #9	BNC1 (ENSCCAG00000022011) #10	HDGFL3 (ENSCCAG00000031086) #11	ENSCCAG00000010217	TM6SF1 (ENSCCAG00000024269) #12	BTBD1 (ENSCCAG00000029931) #13	C15orf40 (ENSCCAG00000029768) #14	ENSCCAG00000035794 #15	HOMER2 (ENSCCAG00000013210) #16	WHAMM (ENSCCAG00000024275) #17	FSD2 (ENSCCAG00000028763) #18	ENSCCAG00000020625	AP3B2 (ENSCCAG00000034178) #21	CPEB1 (ENSCCAG00000037365) #22	ENSCCAG00000030548 #23	ZSCAN2 (ENSCCAG00000027230) #31	WDR73 (ENSCCAG00000019371) #30	NMB (ENSCCAG00000018535) #29	ENSCCAG00000035637 #28	ZNF592 (ENSCCAG00000029711) #27	ENSCCAG00000031744	ALPK3 (ENSCCAG00000026885) #26	SLC28A1 (ENSCCAG00000028655) #25	PDE8A (ENSCCAG00000027173) #24
Bolivian squirrel monkey	MODERN SPECIES	45	SAXO2 (ENSSBOG00000035097) #7	ADAMTSL3 (ENSSBOG00000028912) #8	SH3GL3 (ENSSBOG00000022960) #9	BNC1 (ENSSBOG00000021726) #10	ENSSBOG00000026302	ENSSBOG00000020379	TM6SF1 (ENSSBOG00000021600) #12	BTBD1 (ENSSBOG00000027523) #13	ENSSBOG00000033482 #14	ENSSBOG00000031767 #15	ENSSBOG00000034988	HOMER2 (ENSSBOG00000025200) #16	WHAMM (ENSSBOG00000025370) #17	FSD2 (ENSSBOG00000019547) #18	AP3B2 (ENSSBOG00000000155) #21	CPEB1 (ENSSBOG00000024786) #22	ENSSBOG00000023470 #23	PDE8A (ENSSBOG00000021800) #24	SLC28A1 (ENSSBOG00000035711) #25	ALPK3 (ENSSBOG00000029153) #26	ZNF592 (ENSSBOG00000031284) #27	ENSSBOG00000032841	ENSSBOG00000026502	SEC11A (ENSSBOG00000024018) #28	NMB (ENSSBOG00000029762) #29	WDR73 (ENSSBOG00000032032) #30	ZSCAN2 (ENSSBOG00000020060) #31	AKAP13 (ENSSBOG00000021251)	KLHL25 (ENSSBOG00000017694)	ENSSBOG00000019134	NTRK3 (ENSSBOG00000029993)
Marmoset	MODERN SPECIES	18	SAXO2 (ENSCJAG00000062415) #7	ENSCJAG00000051686	ADAMTSL3 (ENSCJAG00000015699) #8	BNC1 (ENSCJAG00000015761) #10	HDGFL3 (ENSCJAG00000015775) #11	TM6SF1 (ENSCJAG00000015800) #12	BTBD1 (ENSCJAG00000083105) #13	ENSCJAG00000015877 #14	ENSCJAG00000086251 #15	ENSCJAG00000083892	HOMER2 (ENSCJAG00000015884) #16	WHAMM (ENSCJAG00000015916) #17	ENSCJAG00000061356	FSD2 (ENSCJAG00000015939) #18	AP3B2 (ENSCJAG00000015979) #21	CPEB1 (ENSCJAG00000016048) #22	ENSCJAG00000016113 #23	ZSCAN2 (ENSCJAG00000016119) #31	WDR73 (ENSCJAG00000016128) #30	NMB (ENSCJAG00000016140) #29	SEC11A (ENSCJAG00000016146) #28	ZNF592 (ENSCJAG00000016173) #27	ALPK3 (ENSCJAG00000016211) #26	SLC28A1 (ENSCJAG00000016215) #25	ENSCJAG00000006029 #24	ENSCJAG00000023264	ENSCJAG00000069886	ENSCJAG00000080567	RGMA (ENSCJAG00000020452)	CHD2 (ENSCJAG00000020444)	ENSCJAG00000066841
Mas night monkey	MODERN SPECIES	966	MEX3B (ENSANAG00000027164)	EFL1 (ENSANAG00000027459)	ENSANAG00000027178 #7	ADAMTSL3 (ENSANAG00000025367) #8	SH3GL3 (ENSANAG00000025662) #9	BNC1 (ENSANAG00000027373) #10	HDGFL3 (ENSANAG00000023725) #11	TM6SF1 (ENSANAG00000026365) #12	BTBD1 (ENSANAG00000027401) #13	C15orf40 (ENSANAG00000027132) #14	ENSANAG00000026987 #15	HOMER2 (ENSANAG00000025169) #16	WHAMM (ENSANAG00000026975) #17	FSD2 (ENSANAG00000026243) #18	AP3B2 (ENSANAG00000027090) #21	CPEB1 (ENSANAG00000027594) #22	ENSANAG00000026929 #23	ZSCAN2 (ENSANAG00000023842) #31	ENSANAG00000027003	ENSANAG00000026971	WDR73 (ENSANAG00000023533) #30	NMB (ENSANAG00000025389) #29	SEC11A (ENSANAG00000026730) #28	ENSANAG00000023536	ZNF592 (ENSANAG00000023866) #27	ALPK3 (ENSANAG00000023039) #26	SLC28A1 (ENSANAG00000026896) #25	PDE8A (ENSANAG00000024243) #24	AKAP13 (ENSANAG00000027868)	KLHL25 (ENSANAG00000018034)	CDO1 (ENSANAG00000025385)
Tarsier	MODERN SPECIES	5130						BNC1 (ENSTSYG00000004934) #10	HDGFL3 (ENSTSYG00000014583) #11	TM6SF1 (ENSTSYG00000014581) #12	BTBD1 (ENSTSYG00000011957) #13	ENSTSYG00000011956 #14	FAM103A1 (ENSTSYG00000032997) #15	HOMER2 (ENSTSYG00000003591) #16	WHAMM (ENSTSYG00000003559) #17	FSD2 (ENSTSYG00000007674) #18	AP3B2 (ENSTSYG00000007313) #21	CPEB1 (ENSTSYG00000010177) #22	RPS17 (ENSTSYG00000028103) #23	PDE8A (ENSTSYG00000008841) #24	SLC28A1 (ENSTSYG00000003454) #25	ALPK3 (ENSTSYG00000009600) #26	ZNF592 (ENSTSYG00000014765) #27
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Bushbaby	MODERN SPECIES	126	MEX3B (ENSOGAG00000029664)	EFL1 (ENSOGAG00000016365)	SAXO2 (ENSOGAG00000027572) #7	ADAMTSL3 (ENSOGAG00000012437) #8	SH3GL3 (ENSOGAG00000012433) #9	BNC1 (ENSOGAG00000012148) #10	HDGFL3 (ENSOGAG00000011520) #11	TM6SF1 (ENSOGAG00000012142) #12	BTBD1 (ENSOGAG00000012136) #13	C15orf40 (ENSOGAG00000008041) #14	ENSOGAG00000008039 #15	HOMER2 (ENSOGAG00000008031) #16	WHAMM (ENSOGAG00000000311) #17	FSD2 (ENSOGAG00000003943) #18	AP3B2 (ENSOGAG00000010442) #21	CPEB1 (ENSOGAG00000027823) #22	RPS17 (ENSOGAG00000024107) #23	PDE8A (ENSOGAG00000014173) #24	SLC28A1 (ENSOGAG00000014166) #25	ALPK3 (ENSOGAG00000025756) #26	ZNF592 (ENSOGAG00000002465) #27	SEC11A (ENSOGAG00000007281) #28	WDR73 (ENSOGAG00000007271) #30	ZSCAN2 (ENSOGAG00000007268) #31
Lemuriformes	ANCESTRAL SPECIES	43	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.n.a #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.x #24	ENSGT00940000156422.w.a #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.f #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Mouse lemur	MODERN SPECIES	31	ZNF623 (ENSMICG00000000177)	GML (ENSMICG00000045085)	CYP11B1 (ENSMICG00000044462)	ENSMICG00000002589	ENSMICG00000004990 #9	BNC1 (ENSMICG00000015019) #10	HDGFL3 (ENSMICG00000028494) #11	TM6SF1 (ENSMICG00000016971) #12	BTBD1 (ENSMICG00000009567) #13	ENSMICG00000009564 #14	ENSMICG00000046729 #15	HOMER2 (ENSMICG00000017213) #16	WHAMM (ENSMICG00000030573) #17	FSD2 (ENSMICG00000017199) #18	AP3B2 (ENSMICG00000017195) #21	CPEB1 (ENSMICG00000026395) #22	ENSMICG00000035765 #23	PDE8A (ENSMICG00000000779) #24	ENSMICG00000043870 #25	ENSMICG00000000775 #25	ALPK3 (ENSMICG00000033036) #26	ZNF592 (ENSMICG00000000763) #27	SEC11A (ENSMICG00000015944) #28	NMB (ENSMICG00000015939) #29	WDR73 (ENSMICG00000015924) #30	ENSMICG00000030469	ZSCAN2 (ENSMICG00000038660) #31	ZNF774 (ENSMICG00000034148) #32	IQGAP1 (ENSMICG00000006970) #33	CRTC3 (ENSMICG00000006993) #34	BLM (ENSMICG00000034442) #35
Lemuriformes_a	ANCESTRAL SPECIES	143	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.n.a #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.x #24
Greater bamboo lemur	MODERN SPECIES	291	SAXO2 (ENSPSMG00000002909) #7	ADAMTSL3 (ENSPSMG00000002871) #8	SH3GL3 (ENSPSMG00000002811) #9	BNC1 (ENSPSMG00000002769) #10	HDGFL3 (ENSPSMG00000002707) #11	TM6SF1 (ENSPSMG00000002670) #12	BTBD1 (ENSPSMG00000002626) #13	C15orf40 (ENSPSMG00000002596) #14	ENSPSMG00000002585 #15	HOMER2 (ENSPSMG00000002496) #16	WHAMM (ENSPSMG00000002436) #17	FSD2 (ENSPSMG00000002421) #18	ENSPSMG00000002384 #20	AP3B2 (ENSPSMG00000002294) #21	ENSPSMG00000002174	CPEB1 (ENSPSMG00000001795) #22	ENSPSMG00000001607 #23	PDE8A (ENSPSMG00000001549) #24
Coquerels sifaka	MODERN SPECIES	261																CPEB1 (ENSPCOG00000016996) #22	ENSPCOG00000018364 #23
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.i #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Chiroptera	ANCESTRAL SPECIES	43	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.j #14	ENSGT00390000012420.i #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Microchiroptera	ANCESTRAL SPECIES	42	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.j #14	ENSGT00390000012420.i #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Greater horseshoe bat	MODERN SPECIES	20	EFL1 (ENSRFEG00010018418)	SAXO2 (ENSRFEG00010018599) #7	ENSRFEG00010018652	ADAMTSL3 (ENSRFEG00010018687) #8	SH3GL3 (ENSRFEG00010018745) #9	BNC1 (ENSRFEG00010018782) #10	HDGFL3 (ENSRFEG00010018864) #11	TM6SF1 (ENSRFEG00010018906) #12	BTBD1 (ENSRFEG00010018999) #13	C15orf40 (ENSRFEG00010019053) #14	ENSRFEG00010019160 #15	HOMER2 (ENSRFEG00010019193) #16	WHAMM (ENSRFEG00010019252) #17	FSD2 (ENSRFEG00010019284) #18	AP3B2 (ENSRFEG00010019434) #21	CPEB1 (ENSRFEG00010019658) #22	ENSRFEG00010019785 #23	PDE8A (ENSRFEG00010019837) #24	SLC28A1 (ENSRFEG00010020161) #25	ENSRFEG00010020205 #26	ALPK3 (ENSRFEG00010020219) #26	ZNF592 (ENSRFEG00010020242) #27	SEC11A (ENSRFEG00010020269) #28	NMB (ENSRFEG00010020310) #29	WDR73 (ENSRFEG00010020363) #30	ZNF774 (ENSRFEG00010020385) #32	ZSCAN2 (ENSRFEG00010020424) #31	IQGAP1 (ENSRFEG00010020455) #33	CRTC3 (ENSRFEG00010020520) #34	BLM (ENSRFEG00010020582) #35	FURIN (ENSRFEG00010020655) #36
Microbat	MODERN SPECIES	1683													ENSMLUG00000001597 #18	ENSMLUG00000027968 #20	AP3B2 (ENSMLUG00000001592) #21	CPEB1 (ENSMLUG00000025000) #22	ENSMLUG00000022830 ##23	ENSMLUG00000005699 #24
Megabat	MODERN SPECIES	2675															AP3B2 (ENSPVAG00000012025) #21	CPEB1 (ENSPVAG00000012024) #22	RPS17 (ENSPVAG00000012022) #23
Equus	ANCESTRAL SPECIES	4	ENSGT00940000158198	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.i #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Donkey	MODERN SPECIES	11	ENSEASG00005007000	ENSEASG00005028258	ENSEASG00005031017 #7	ENSEASG00005006992 #8	SH3GL3 (ENSEASG00005006989) #9	BNC1 (ENSEASG00005006986) #10	HDGFL3 (ENSEASG00005006985) #11	TM6SF1 (ENSEASG00005006983) #12	BTBD1 (ENSEASG00005006980) #13	ENSEASG00005033618 #14	ENSEASG00005038465 #15	HOMER2 (ENSEASG00005006974) #16	WHAMM (ENSEASG00005006968) #17	FSD2 (ENSEASG00005006964) #18	AP3B2 (ENSEASG00005006959) #21	CPEB1 (ENSEASG00005006958) #22	ENSEASG00005023808 #23	ENSEASG00005006954 #24	SLC28A1 (ENSEASG00005006947) #25	ALPK3 (ENSEASG00005006923) #26	ZNF592 (ENSEASG00005006915) #27	SEC11A (ENSEASG00005006897) #28	NMB (ENSEASG00005035473) #29	WDR73 (ENSEASG00005006891) #30	ENSEASG00005036281	ENSEASG00005032159	ENSEASG00005006884 #31	ENSEASG00005032976 #32	ENSEASG00005006876 #33	CRTC3 (ENSEASG00005006853) #34	ENSEASG00005028389
Horse	MODERN SPECIES		ENSECAG00000049618	ENSECAG00000008087 #7	ADAMTSL3 (ENSECAG00000010184) #8	BNC1 (ENSECAG00000017409) #10	HDGFL3 (ENSECAG00000020143) #11	ENSECAG00000037870	TM6SF1 (ENSECAG00000003056) #12	BTBD1 (ENSECAG00000017040) #13	ENSECAG00000044312 #15	ENSECAG00000022459 #14	HOMER2 (ENSECAG00000023619) #16	WHAMM (ENSECAG00000015813) #17	FSD2 (ENSECAG00000017074) #18	ENSECAG00000019211 #20	AP3B2 (ENSECAG00000019658) #21	CPEB1 (ENSECAG00000016873) #22	PDE8A (ENSECAG00000007337) #24	ENSECAG00000024902 #23	SLC28A1 (ENSECAG00000007499) #25	ZNF592 (ENSECAG00000016283) #26	ZNF592 (ENSECAG00000056144) #27	SEC11A (ENSECAG00000021187) #28	NMB (ENSECAG00000008013) #29	WDR73 (ENSECAG00000008151) #30	ENSECAG00000012271	ENSECAG00000051040	ENSECAG00000050833	ZSCAN2 (ENSECAG00000022470) #31	ENSECAG00000060063 #32	IQGAP1 (ENSECAG00000023879) #33	CRTC3 (ENSECAG00000024475) #34
Carnivora	ANCESTRAL SPECIES		ENSGT00940000171184.b	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000171184.b	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d.j #26	ENSGT00940000158534.d.i #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00940000171184.b	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.j #26	ENSGT00940000158534.d.i #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Ursidae	ANCESTRAL SPECIES	40	ENSGT00940000171184.b	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00910000147777	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.j.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.j #26	ENSGT00940000158534.d.i #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Ursus	ANCESTRAL SPECIES	66	ENSGT00940000171184.b	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00910000147777	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.j.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.j #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Polar bear	MODERN SPECIES	145	EFL1 (ENSUMAG00000010303)	SAXO2 (ENSUMAG00000010300) #7	ADAMTSL3 (ENSUMAG00000010242) #8	SH3GL3 (ENSUMAG00000010217) #9	BNC1 (ENSUMAG00000010210) #10	ENSUMAG00000010206	TM6SF1 (ENSUMAG00000010199) #12	BTBD1 (ENSUMAG00000010190) #13	C15orf40 (ENSUMAG00000010175) #14	ENSUMAG00000010167 #15	HOMER2 (ENSUMAG00000010143) #16	ENSUMAG00000010136 #17	FSD2 (ENSUMAG00000010116) #18	ENSUMAG00000010108 #20	AP3B2 (ENSUMAG00000010085) #21	CPEB1 (ENSUMAG00000009960) #22	RPS17 (ENSUMAG00000009934) ##23	PDE8A (ENSUMAG00000009911) #24	SLC28A1 (ENSUMAG00000009875) #25	ENSUMAG00000009872 #26	ZNF592 (ENSUMAG00000009842) #27	ENSUMAG00000009831 #28	ENSUMAG00000009826	WDR73 (ENSUMAG00000009821) #30	ZSCAN2 (ENSUMAG00000009807) #31	ZNF774 (ENSUMAG00000009801) #32	IQGAP1 (ENSUMAG00000009355) #33	CRTC3 (ENSUMAG00000009280) #34	ENSUMAG00000009272	BLM (ENSUMAG00000009105) #35	FURIN (ENSUMAG00000009053) #36
American black bear	MODERN SPECIES	265													HOMER2 (ENSUAMG00000010083) #16	FSD2 (ENSUAMG00000010070) #18	AP3B2 (ENSUAMG00000009844) #21	CPEB1 (ENSUAMG00000009576) #22	ENSUAMG00000009551 #23	PDE8A (ENSUAMG00000009525) #24
Giant Panda	MODERN SPECIES	19	EFL1 (ENSAMEG00000006031)	ENSAMEG00000006025 #7	ENSAMEG00000014528 #8	ENSAMEG00000014507 #9	BNC1 (ENSAMEG00000023644) #10	ENSAMEG00000014505	ENSAMEG00000000533	TM6SF1 (ENSAMEG00000000543) #12	BTBD1 (ENSAMEG00000000582) #13	ENSAMEG00000028576 #14	RAMAC (ENSAMEG00000030535) #15	HOMER2 (ENSAMEG00000014256) #16	WHAMM (ENSAMEG00000014243) #17	FSD2 (ENSAMEG00000014228) #18	AP3B2 (ENSAMEG00000014158) #21	RPS17 (ENSAMEG00000014129) #22	ENSAMEG00000014097 #24	SLC28A1 (ENSAMEG00000014044) #25	ENSAMEG00000014038 #26	ENSAMEG00000027913 #26	ZNF592 (ENSAMEG00000014030) #27	ENSAMEG00000014016 #28	NMB (ENSAMEG00000026039) #29	WDR73 (ENSAMEG00000013994) #30	ENSAMEG00000025784	ENSAMEG00000013986 #32	ENSAMEG00000013989 #31	IQGAP1 (ENSAMEG00000013896) #33	CRTC3 (ENSAMEG00000013883) #34	ENSAMEG00000030648	BLM (ENSAMEG00000013843) #35
Mustelinae	ANCESTRAL SPECIES	36	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d.j #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Ferret	MODERN SPECIES	260	SAXO2 (ENSMPUG00000015495) #7	ADAMTSL3 (ENSMPUG00000015499) #8	SH3GL3 (ENSMPUG00000015505) #9	ENSMPUG00000015507	BNC1 (ENSMPUG00000015509) #10	HDGFL3 (ENSMPUG00000015513) #11	TM6SF1 (ENSMPUG00000015519) #12	BTBD1 (ENSMPUG00000015544) #13	HOMER2 (ENSMPUG00000015556) #16	ENSMPUG00000015558 #17	FSD2 (ENSMPUG00000015561) #18	ENSMPUG00000015562	ENSMPUG00000015564	AP3B2 (ENSMPUG00000015566) #21	ENSMPUG00000015568	CPEB1 (ENSMPUG00000015570) #22	ENSMPUG00000015571 #23	PDE8A (ENSMPUG00000015574) #24	SLC28A1 (ENSMPUG00000015576) #25	ALPK3 (ENSMPUG00000015611) #26	ZNF592 (ENSMPUG00000015616) #27	SEC11A (ENSMPUG00000015619) #28	NMB (ENSMPUG00000015621) #29	WDR73 (ENSMPUG00000015622) #30	ZSCAN2 (ENSMPUG00000015626) #31	ZNF774 (ENSMPUG00000015627) #32	IQGAP1 (ENSMPUG00000015630) #33	ENSMPUG00000015635	CRTC3 (ENSMPUG00000015636) #34	BLM (ENSMPUG00000015657) #35	FURIN (ENSMPUG00000015661) #36
American mink	MODERN SPECIES	81	RGS8 (ENSNVIG00000015057)	RGS16 (ENSNVIG00000015121)	RNASEL (ENSNVIG00000015132)	ENSNVIG00000015167	BNC1 (ENSNVIG00000015175) #10	ENSNVIG00000015200	TM6SF1 (ENSNVIG00000015207) #12	BTBD1 (ENSNVIG00000015222) #13	ENSNVIG00000015249 #14	RAM (ENSNVIG00000015268) #15	HOMER2 (ENSNVIG00000015284) #16	WHAMM (ENSNVIG00000015357) #17	FSD2 (ENSNVIG00000015407) #18	ENSNVIG00000015491 #20	AP3B2 (ENSNVIG00000015503) #21	CPEB1 (ENSNVIG00000015661) #22	ENSNVIG00000015790 #23	PDE8A (ENSNVIG00000015829) #24	SLC28A1 (ENSNVIG00000015994) #25	ENSNVIG00000016167 #26	ZNF592 (ENSNVIG00000016182) #27	SEC11A (ENSNVIG00000016209) #28	NMB (ENSNVIG00000016251) #29	WDR73 (ENSNVIG00000016258) #30	ENSNVIG00000016266 #31	ZNF774 (ENSNVIG00000016302) #32	IQGAP1 (ENSNVIG00000016309) #33	ENSNVIG00000016368	CRTC3 (ENSNVIG00000016379) #34	BLM (ENSNVIG00000016476) #35	FURIN (ENSNVIG00000016579) #36
Canidae	ANCESTRAL SPECIES	21	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g.a #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.j.a #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d.j #26	ENSGT00940000158534.d.i #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420.g.a #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT01050000248139	ENSGT00940000158534.d.j #26	ENSGT00940000158534.d.i #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33
Dog	MODERN SPECIES	22	MEX3B (ENSCAFG00845004725)	EFL1 (ENSCAFG00845004667)	SAXO2 (ENSCAFG00845004609) #7	ADAMTSL3 (ENSCAFG00845004334) #8	BNC1 (ENSCAFG00845004269) #10	ENSCAFG00845004252	ENSCAFG00845004196	TM6SF1 (ENSCAFG00845004175) #12	BTBD1 (ENSCAFG00845004133) #13	ENSCAFG00845004112 #15	C3H15orf40 (ENSCAFG00845004040) #16	WHAMM (ENSCAFG00845003974) #17	FSD2 (ENSCAFG00845003925) #18	ENSCAFG00845003881 #20	AP3B2 (ENSCAFG00845003752) #21	CPEB1 (ENSCAFG00845003572) #22	RPS17 (ENSCAFG00845003480) #23	ENSCAFG00845003266 #24	ENSCAFG00845003154 #25	ENSCAFG00845003127	ALPK3 (ENSCAFG00845003070) #26	ZNF592 (ENSCAFG00845002986) #27	SEC11A (ENSCAFG00845002905) #28	NMB (ENSCAFG00845002835) #29	WDR73 (ENSCAFG00845002803) #30	ENSCAFG00845002756	ENSCAFG00845002718	ENSCAFG00845002675 #31	ZNF774 (ENSCAFG00845002640) #32	IQGAP1 (ENSCAFG00845002591) #33	ENSCAFG00845002533 #34
Dingo	MODERN SPECIES	138	ENSCAFG00020015838 #7	ADAMTSL3 (ENSCAFG00020015851) #8	SH3GL3 (ENSCAFG00020015878) #9	BNC1 (ENSCAFG00020015886) #10	HDGFL3 (ENSCAFG00020015896) #11	TM6SF1 (ENSCAFG00020015897) #12	BTBD1 (ENSCAFG00020015932) #13	ENSCAFG00020015936 #14	ENSCAFG00020015938 #15	HOMER2 (ENSCAFG00020015944) #16	WHAMM (ENSCAFG00020015949) #17	ENSCAFG00020015955	ENSCAFG00020015960 #18	ENSCAFG00020015966 #20	AP3B2 (ENSCAFG00020015974) #21	CPEB1 (ENSCAFG00020016046) #22	ENSCAFG00020016066 #23	ENSCAFG00020016071 #24	ENSCAFG00020016082 #24	SLC28A1 (ENSCAFG00020016083) #25	ENSCAFG00020016084 #26	ENSCAFG00020016085 #26	ZNF592 (ENSCAFG00020016088) #27	ENSCAFG00020016090 #28	NMB (ENSCAFG00020016093) #29	WDR73 (ENSCAFG00020016094) #30	ENSCAFG00020016095	ZSCAN2 (ENSCAFG00020016096) #31	ZNF774 (ENSCAFG00020016097) #32	IQGAP1 (ENSCAFG00020016100) #33	CRTC3 (ENSCAFG00020016106) #34
Red fox	MODERN SPECIES	1	TMC3 (ENSVVUG00000004913)	MEX3B (ENSVVUG00000004955)	EFL1 (ENSVVUG00000004967)	SAXO2 (ENSVVUG00000004977) #7	ADAMTSL3 (ENSVVUG00000005000) #8	BNC1 (ENSVVUG00000005053) #10	HDGFL3 (ENSVVUG00000005057) #11	TM6SF1 (ENSVVUG00000005062) #12	BTBD1 (ENSVVUG00000005093) #13	ENSVVUG00000005097 #14	RAMAC (ENSVVUG00000005104) #15	HOMER2 (ENSVVUG00000005118) #16	WHAMM (ENSVVUG00000005121) #17	FSD2 (ENSVVUG00000005129) #18	AP3B2 (ENSVVUG00000005164) #21	CPEB1 (ENSVVUG00000005937) #22	RPS17 (ENSVVUG00000005945) #23	PDE8A (ENSVVUG00000006066) #24	SLC28A1 (ENSVVUG00000006123) #25	ENSVVUG00000006150 #26	ENSVVUG00000006157 #26	ZNF592 (ENSVVUG00000006182) #27	SEC11A (ENSVVUG00000006206) #28	NMB (ENSVVUG00000006212) #29	WDR73 (ENSVVUG00000006217) #30	ENSVVUG00000006236	ENSVVUG00000006239	ZSCAN2 (ENSVVUG00000006240) #31	ZNF774 (ENSVVUG00000006241) #32	IQGAP1 (ENSVVUG00000006256) #33	CRTC3 (ENSVVUG00000006291) #34
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710.d #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C.d #34	ENSGT00940000156800 #35
Cat	MODERN SPECIES	237	EFL1 (ENSFCAG00000007741)	SAXO2 (ENSFCAG00000028162) #7	ENSFCAG00000050643	ADAMTSL3 (ENSFCAG00000001257) #8	SH3GL3 (ENSFCAG00000001256) #9	BNC1 (ENSFCAG00000004847) #10	HDGFL3 (ENSFCAG00000032157) #11	TM6SF1 (ENSFCAG00000011181) #12	BTBD1 (ENSFCAG00000026004) #13	CB3H15orf40 (ENSFCAG00000033765) #14	ENSFCAG00000032519 #15	HOMER2 (ENSFCAG00000031405) #16	WHAMM (ENSFCAG00000008726) #17	FSD2 (ENSFCAG00000008724) #18	AP3B2 (ENSFCAG00000018828) #21	CPEB1 (ENSFCAG00000018275) #22	RPS17 (ENSFCAG00000002358) #23	PDE8A (ENSFCAG00000013602) #24	SLC28A1 (ENSFCAG00000013601) #25	ALPK3 (ENSFCAG00000045671) #26	ZNF592 (ENSFCAG00000013599) #27	SEC11A (ENSFCAG00000029786) #28	NMB (ENSFCAG00000029080) #29	WDR73 (ENSFCAG00000010250) #30	ENSFCAG00000048473	ZSCAN2 (ENSFCAG00000046332) #31	ZNF774 (ENSFCAG00000025094) #32	IQGAP1 (ENSFCAG00000006349) #33	CRTC3 (ENSFCAG00000023085) #34	BLM (ENSFCAG00000006087) #35	FURIN (ENSFCAG00000006091) #36
Panthera	ANCESTRAL SPECIES	31	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710.d #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C.d #34	ENSGT00940000156800 #35
Panthera_a	ANCESTRAL SPECIES	33	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710.d #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C.d #34	ENSGT00940000156800 #35
leopard	MODERN SPECIES	35	TMC3 (ENSPPRG00000000134)	EFL1 (ENSPPRG00000002193)	SAXO2 (ENSPPRG00000002658) #7	ADAMTSL3 (ENSPPRG00000006668) #8	SH3GL3 (ENSPPRG00000007586) #9	BNC1 (ENSPPRG00000008109) #10	HDGFL3 (ENSPPRG00000009100) #11	TM6SF1 (ENSPPRG00000009823) #12	BTBD1 (ENSPPRG00000010853) #13	C15orf40 (ENSPPRG00000010940) #14	ENSPPRG00000011086 #15	HOMER2 (ENSPPRG00000011675) #16	WHAMM (ENSPPRG00000012988) #17	FSD2 (ENSPPRG00000013845) #18	AP3B2 (ENSPPRG00000002778) #21	CPEB1 (ENSPPRG00000006440) #22	RPS17 (ENSPPRG00000006966) #23	PDE8A (ENSPPRG00000009604) #24	SLC28A1 (ENSPPRG00000011202) #25	ZNF592 (ENSPPRG00000012464) #27	ENSPPRG00000013836 #28	NMB (ENSPPRG00000014674) #29	WDR73 (ENSPPRG00000014859) #30	ENSPPRG00000014920	ENSPPRG00000015523 #31	ZSCAN2 (ENSPPRG00000017114) #31	ZNF774 (ENSPPRG00000018865) #32	IQGAP1 (ENSPPRG00000023896) #33	CRTC3 (ENSPPRG00000022790) #34	BLM (ENSPPRG00000002471) #35	FURIN (ENSPPRG00000003153) #36
lion	MODERN SPECIES	6	MEX3B (ENSPLOG00000013059)	EFL1 (ENSPLOG00000013113)	SAXO2 (ENSPLOG00000013279) #7	ADAMTSL3 (ENSPLOG00000013417) #8	SH3GL3 (ENSPLOG00000013927) #9	BNC1 (ENSPLOG00000014101) #10	HDGFL3 (ENSPLOG00000014165) #11	TM6SF1 (ENSPLOG00000014280) #12	BTBD1 (ENSPLOG00000014400) #13	C15orf40 (ENSPLOG00000014468) #14	ENSPLOG00000014521 #15	HOMER2 (ENSPLOG00000014554) #16	WHAMM (ENSPLOG00000014721) #17	FSD2 (ENSPLOG00000014756) #18	AP3B2 (ENSPLOG00000015177) #21	CPEB1 (ENSPLOG00000016045) #22	ENSPLOG00000016490 #23	PDE8A (ENSPLOG00000016584) #24	SLC28A1 (ENSPLOG00000017104) #25	ENSPLOG00000017356 #26	ZNF592 (ENSPLOG00000017374) #27	SEC11A (ENSPLOG00000017428) #28	NMB (ENSPLOG00000017624) #29	WDR73 (ENSPLOG00000017670) #30	ENSPLOG00000017741	ENSPLOG00000017819	ZSCAN2 (ENSPLOG00000017927) #31	ZNF774 (ENSPLOG00000017985) #32	IQGAP1 (ENSPLOG00000018225) #33	CRTC3 (ENSPLOG00000018390) #34	BLM (ENSPLOG00000018572) #35
Tiger	MODERN SPECIES	112	STARD5 (ENSPTIG00000006219)	TMC3 (ENSPTIG00000006477)	EFL1 (ENSPTIG00000007053)	ENSPTIG00000007505	ADAMTSL3 (ENSPTIG00000007569) #8	SH3GL3 (ENSPTIG00000008313) #9	BNC1 (ENSPTIG00000008490) #10	HDGFL3 (ENSPTIG00000008577) #11	TM6SF1 (ENSPTIG00000008627) #12	BTBD1 (ENSPTIG00000008830) #13	C15orf40 (ENSPTIG00000008915) #14	ENSPTIG00000009107 #15	HOMER2 (ENSPTIG00000009131) #16	FSD2 (ENSPTIG00000009332) #18	AP3B2 (ENSPTIG00000009568) #21	CPEB1 (ENSPTIG00000010359) #22	RPS17 (ENSPTIG00000010841) #23	PDE8A (ENSPTIG00000010986) #24	SLC28A1 (ENSPTIG00000011873) #25	ALPK3 (ENSPTIG00000012152) #26	ZNF592 (ENSPTIG00000012392) #27	SEC11A (ENSPTIG00000012827) #28	NMB (ENSPTIG00000013457) #29	WDR73 (ENSPTIG00000013573) #30	ENSPTIG00000010247	ENSPTIG00000010256 #31	ENSPTIG00000013822 #31	ZNF774 (ENSPTIG00000013971) #32	IQGAP1 (ENSPTIG00000014210) #33	CRTC3 (ENSPTIG00000015609) #34	BLM (ENSPTIG00000016168) #35
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Suina	ANCESTRAL SPECIES	38	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Pig	MODERN SPECIES	15	EFL1 (ENSSSCG00000001792)	SAXO2 (ENSSSCG00000031963) #7	ADAMTSL3 (ENSSSCG00000001793) #8	SH3GL3 (ENSSSCG00000001795) #9	BNC1 (ENSSSCG00000001798) #10	HDGFL3 (ENSSSCG00000035432) #11	TM6SF1 (ENSSSCG00000001800) #12	BTBD1 (ENSSSCG00000001801) #13	C15orf40 (ENSSSCG00000030131) #14	ENSSSCG00000041719	ENSSSCG00000038630 #15	HOMER2 (ENSSSCG00000001804) #16	WHAMM (ENSSSCG00000001805) #17	FSD2 (ENSSSCG00000001806) #18	AP3B2 (ENSSSCG00000001807) #21	CPEB1 (ENSSSCG00000001808) #22	RPS17 (ENSSSCG00000027358) #23	PDE8A (ENSSSCG00000001810) #24	SLC28A1 (ENSSSCG00000002632) #25	ALPK3 (ENSSSCG00000041322) #26	ZNF592 (ENSSSCG00000034070) #27	SEC11A (ENSSSCG00000029183) #28	NMB (ENSSSCG00000036907) #29	WDR73 (ENSSSCG00000022451) #30	ENSSSCG00000036356 #31	IQGAP1 (ENSSSCG00000001814) #33	CRTC3 (ENSSSCG00000034090) #34	BLM (ENSSSCG00000001816) #35	FURIN (ENSSSCG00000001817) #36	FES (ENSSSCG00000001818) #37	MAN2A2 (ENSSSCG00000001819)
Chacoan peccary	MODERN SPECIES	883	CBLN3 (ENSCWAG00000017023)	NYNRIN (ENSCWAG00000016961)	NFATC4 (ENSCWAG00000016782)	RIPK3 (ENSCWAG00000016748)	ADCY4 (ENSCWAG00000016578)	LTB4R (ENSCWAG00000016557)	LTB4R2 (ENSCWAG00000016541)	BTBD1 (ENSCWAG00000016489) #13	C15orf40 (ENSCWAG00000016370) #14	ENSCWAG00000016328 #15	HOMER2 (ENSCWAG00000016055) #16	WHAMM (ENSCWAG00000016007) #17	FSD2 (ENSCWAG00000015850) #18	ENSCWAG00000015811 #20	AP3B2 (ENSCWAG00000014670) #21	CPEB1 (ENSCWAG00000014350) #22	RPS17 (ENSCWAG00000014291) #23	PDE8A (ENSCWAG00000013902) #24	SLC28A1 (ENSCWAG00000013507) #25	ENSCWAG00000013434 #26	ZNF592 (ENSCWAG00000013373) #27	SEC11A (ENSCWAG00000013274) #28	NMB (ENSCWAG00000013206) #29	WDR73 (ENSCWAG00000013124) #30	ENSCWAG00000013075	ZSCAN2 (ENSCWAG00000013006) #31	ZNF774 (ENSCWAG00000012930) #32	IQGAP1 (ENSCWAG00000012760) #33	CRTC3 (ENSCWAG00000012563) #34	BLM (ENSCWAG00000012194) #35	FURIN (ENSCWAG00000012111) #36
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Camelidae	ANCESTRAL SPECIES	21	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Alpaca	MODERN SPECIES	2341																CPEB1 (ENSVPAG00000006006) #22	RPS17 (ENSVPAG00000006005) #23
Arabian camel	MODERN SPECIES	19	EFL1 (ENSCDRG00005016794)	SAXO2 (ENSCDRG00005016737) #7	ADAMTSL3 (ENSCDRG00005016597) #8	SH3GL3 (ENSCDRG00005016490) #9	BNC1 (ENSCDRG00005016432) #10	HDGFL3 (ENSCDRG00005016397) #11	TM6SF1 (ENSCDRG00005016280) #12	BTBD1 (ENSCDRG00005016198) #13	C15orf40 (ENSCDRG00005016098) #14	ENSCDRG00005016067 #15	HOMER2 (ENSCDRG00005015958) #16	WHAMM (ENSCDRG00005015795) #17	FSD2 (ENSCDRG00005015706) #18	ENSCDRG00005015655 #20	AP3B2 (ENSCDRG00005014586) #21	CPEB1 (ENSCDRG00005014353) #22	ENSCDRG00005014303 #23	PDE8A (ENSCDRG00005014212) #24	SLC28A1 (ENSCDRG00005014123) #25	ALPK3 (ENSCDRG00005013825) #26	ZNF592 (ENSCDRG00005013741) #27	SEC11A (ENSCDRG00005013419) #28	NMB (ENSCDRG00005013351) #29	WDR73 (ENSCDRG00005013312) #30	ZSCAN2 (ENSCDRG00005013174) #31	ZNF774 (ENSCDRG00005013125) #32	IQGAP1 (ENSCDRG00005012876) #33	CRTC3 (ENSCDRG00005012619) #34	BLM (ENSCDRG00005012424) #35	FURIN (ENSCDRG00005012204) #36	FES (ENSCDRG00005011337) #37
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000171184	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Cetacea	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT01010000228749	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.y #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.n #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000167480	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT01010000228749	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.y #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.n #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT01010000228749	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.y #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.n #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Dolphin	MODERN SPECIES	2265															AP3B2 (ENSTTRG00000013017) #21	CPEB1 (ENSTTRG00000013014) #22	RPS17 (ENSTTRG00000013011) #23
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000167521	ENSGT01010000228749	ENSGT00940000158143 #8	ENSGT00940000155143.mb.b.b	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.y #24	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.n #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Monodontidae	ANCESTRAL SPECIES	22	ENSGT01010000228749	ENSGT00940000167521	ENSGT00940000158143 #8	ENSGT00940000155143.mb.b.b	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b.f #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422.y #24	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a.n #28	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Narwhal	MODERN SPECIES	308	ENSMMNG00015006004	ENSMMNG00015006014	ENSMMNG00015006025	ADAMTSL3 (ENSMMNG00015006039) #8	ENSMMNG00015006062	SH3GL3 (ENSMMNG00015006087) #9	BNC1 (ENSMMNG00015006118) #10	ENSMMNG00015006137 #11	TM6SF1 (ENSMMNG00015006163) #12	BTBD1 (ENSMMNG00015006202) #13	C15orf40 (ENSMMNG00015006226) #14	ENSMMNG00015006242 #15	HOMER2 (ENSMMNG00015006265) #16	WHAMM (ENSMMNG00015006289) #17	AP3B2 (ENSMMNG00015006388) #21	CPEB1 (ENSMMNG00015006558) #22	RPS17 (ENSMMNG00015006600) #23	ENSMMNG00015006658 #24	ALPK3 (ENSMMNG00015006806) #26	ZNF592 (ENSMMNG00015006853) #27	SEC11A (ENSMMNG00015006898) #28	WDR73 (ENSMMNG00015006942) #30	ENSMMNG00015006964	ZSCAN2 (ENSMMNG00015006979) #31	ZNF774 (ENSMMNG00015006997) #32	IQGAP1 (ENSMMNG00015007065) #33	CRTC3 (ENSMMNG00015007207) #34	BLM (ENSMMNG00015007274) #35	FURIN (ENSMMNG00015007319) #36	FES (ENSMMNG00015007431) #37	MAN2A2 (ENSMMNG00015007612)
Beluga whale	MODERN SPECIES	52	ENSDLEG00000007040	ENSDLEG00000007043	SH3GL3 (ENSDLEG00000007052) #8	ENSDLEG00000007146	BNC1 (ENSDLEG00000007155) #10	HDGFL3 (ENSDLEG00000007164) #11	TM6SF1 (ENSDLEG00000007180) #12	BTBD1 (ENSDLEG00000007193) #13	ENSDLEG00000007204	ENSDLEG00000007211	FAM103A1 (ENSDLEG00000007216) #15	HOMER2 (ENSDLEG00000007224) #16	WHAMM (ENSDLEG00000007245) #17	FSD2 (ENSDLEG00000007263) #18	AP3B2 (ENSDLEG00000007293) #21	CPEB1 (ENSDLEG00000007340) #22	RPS17 (ENSDLEG00000007470) #23	ENSDLEG00000007485 #24	ALPK3 (ENSDLEG00000007554) #26	ZNF592 (ENSDLEG00000007614) #27	SEC11A (ENSDLEG00000007620) #28	WDR73 (ENSDLEG00000007633) #30	ENSDLEG00000007644	ZSCAN2 (ENSDLEG00000007647) #31	ENSDLEG00000007650	ZNF774 (ENSDLEG00000007656) #32	IQGAP1 (ENSDLEG00000007663) #33	CRTC3 (ENSDLEG00000007679) #34	BLM (ENSDLEG00000007694) #35	FURIN (ENSDLEG00000007721) #36	FES (ENSDLEG00000007733) #37
Vaquita	MODERN SPECIES	11	ENSPSNG00000003531	ADAMTSL3 (ENSPSNG00000003550) #8	ENSPSNG00000003570	SH3GL3 (ENSPSNG00000003586) #9	BNC1 (ENSPSNG00000003619) #10	ENSPSNG00000003655 #11	TM6SF1 (ENSPSNG00000003711) #12	BTBD1 (ENSPSNG00000003787) #13	C15orf40 (ENSPSNG00000003817) #14	ENSPSNG00000003836 #15	HOMER2 (ENSPSNG00000003853) #16	WHAMM (ENSPSNG00000003878) #17	ENSPSNG00000000036	FSD2 (ENSPSNG00000000101) #18	AP3B2 (ENSPSNG00000000392) #21	CPEB1 (ENSPSNG00000000649) #22	RPS17 (ENSPSNG00000000697) #23	PDE8A (ENSPSNG00000000747) #24	ENSPSNG00000000838 #26	ZNF592 (ENSPSNG00000000853) #27	ENSPSNG00000000885 #28	NMB (ENSPSNG00000000921) #29	WDR73 (ENSPSNG00000000936) #30	ENSPSNG00000000963	ENSPSNG00000000972	ZSCAN2 (ENSPSNG00000000995) #31	ZNF774 (ENSPSNG00000001011) #32	IQGAP1 (ENSPSNG00000001082) #33	CRTC3 (ENSPSNG00000001180) #34	BLM (ENSPSNG00000001212) #35	FURIN (ENSPSNG00000001242) #36
Sperm whale	MODERN SPECIES	2	ADAMTSL3 (ENSPCTG00005021700) #8	SH3GL3 (ENSPCTG00005021796) #9	ENSPCTG00005021815	BNC1 (ENSPCTG00005021834) #10	HDGFL3 (ENSPCTG00005021855) #11	ENSPCTG00005021865	ENSPCTG00005021881	TM6SF1 (ENSPCTG00005021905) #12	BTBD1 (ENSPCTG00005021918) #13	ENSPCTG00005021930	RAMAC (ENSPCTG00005021937) #15	HOMER2 (ENSPCTG00005021951) #16	WHAMM (ENSPCTG00005021965) #17	FSD2 (ENSPCTG00005021984) #18	AP3B2 (ENSPCTG00005022063) #21	CPEB1 (ENSPCTG00005022154) #22	ENSPCTG00005022163 #23	PDE8A (ENSPCTG00005022193) #24	SEC11A (ENSPCTG00005022240) #28	ZNF592 (ENSPCTG00005022266) #27	ENSPCTG00005022284	ZSCAN2 (ENSPCTG00005022293) #31	ZNF774 (ENSPCTG00005022305) #32	IQGAP1 (ENSPCTG00005022324) #33	CRTC3 (ENSPCTG00005022350) #34	BLM (ENSPCTG00005022354) #35	ENSPCTG00005000495	FURIN (ENSPCTG00005000552) #36	ENSPCTG00005000676 #37	ENSPCTG00005000875 #37	MAN2A2 (ENSPCTG00005000898)
Blue whale	MODERN SPECIES	11	ADAMTSL3 (ENSBMSG00010000591) #8	ENSBMSG00010000655	ENSBMSG00010000674	ENSBMSG00010000689	ENSBMSG00010000710 #9	BNC1 (ENSBMSG00010000747) #10	ENSBMSG00010000764 #11	TM6SF1 (ENSBMSG00010000809) #12	BTBD1 (ENSBMSG00010000854) #13	C15orf40 (ENSBMSG00010000885) #14	ENSBMSG00010000901	HOMER2 (ENSBMSG00010000920) #16	WHAMM (ENSBMSG00010000949) #17	FSD2 (ENSBMSG00010001006) #18	AP3B2 (ENSBMSG00010001277) #21	CPEB1 (ENSBMSG00010001564) #22	RPS17 (ENSBMSG00010001615) #23	ENSBMSG00010001631	PDE8A (ENSBMSG00010001702) #24	ENSBMSG00010001789	ENSBMSG00010001821 #26	ZNF592 (ENSBMSG00010001882) #27	ENSBMSG00010001925 #28	NMB (ENSBMSG00010001981) #29	WDR73 (ENSBMSG00010001998) #30	ENSBMSG00010002008	ENSBMSG00010002024	ZSCAN2 (ENSBMSG00010002036) #31	ZNF774 (ENSBMSG00010002074) #32	IQGAP1 (ENSBMSG00010002121) #33	CRTC3 (ENSBMSG00010002190) #34
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00940000171184	ENSGT00550000074806	ENSGT00940000160013	ENSGT00390000005052.r	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00940000171184	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Siberian musk deer	MODERN SPECIES	1277	ADAMTSL3 (ENSMMSG00000022467) #8	SAXO2 (ENSMMSG00000022484) #7	ENSMMSG00000022493	EFL1 (ENSMMSG00000022505)	ENSMMSG00000022552	MEX3B (ENSMMSG00000022560)	ENSMMSG00000022569	ENSMMSG00000022577	C15orf40 (ENSMMSG00000022590) #14	ENSMMSG00000022608 #15	HOMER2 (ENSMMSG00000022623) #16	WHAMM (ENSMMSG00000022641) #17	FSD2 (ENSMMSG00000022666) #18	ENSMMSG00000022686 #20	AP3B2 (ENSMMSG00000022759) #21	CPEB1 (ENSMMSG00000023031) #22	ENSMMSG00000023100 #23	PDE8A (ENSMMSG00000023116) #24	SLC28A1 (ENSMMSG00000023159) #25	ALPK3 (ENSMMSG00000023207) #26	ZNF592 (ENSMMSG00000023226) #27	SEC11A (ENSMMSG00000023242) #28	ENSMMSG00000023262	WDR73 (ENSMMSG00000023281) #30	ENSMMSG00000023294	ZSCAN2 (ENSMMSG00000023303) #31	ZNF774 (ENSMMSG00000023312) #32	IQGAP1 (ENSMMSG00000023324) #33	ENSMMSG00000023348	CRTC3 (ENSMMSG00000023356) #34	BLM (ENSMMSG00000023383) #35
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000153942.b.f.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Caprinae	ANCESTRAL SPECIES	22	ENSGT00390000012913.b #12	ENSGT00940000153942.b.f.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00390000005052.r	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020022110	ENSOARG00020022086	MEX3B (ENSOARG00020022067)	EFL1 (ENSOARG00020021799)	SH3GL3 (ENSOARG00020021545) #9	BNC1 (ENSOARG00020021484) #10	HDGFL3 (ENSOARG00020021416) #11	TM6SF1 (ENSOARG00020021147) #12	BTBD1 (ENSOARG00020021086) #13	ENSOARG00020021019 #24	C18H15orf40 (ENSOARG00020020903) #14	RAMAC (ENSOARG00020020863) #15	HOMER2 (ENSOARG00020020763) #16	FSD2 (ENSOARG00020020619) #18	AP3B2 (ENSOARG00020019721) #21	CPEB1 (ENSOARG00020019377) #22	ENSOARG00020019009 #24	SLC28A1 (ENSOARG00020018876) #25	SEC11A (ENSOARG00020018653) #28	NMB (ENSOARG00020018557) #29	WDR73 (ENSOARG00020018465) #30	ENSOARG00020018434 #31	ENSOARG00020018410	IQGAP1 (ENSOARG00020017864) #33	CRTC3 (ENSOARG00020017636) #34	BLM (ENSOARG00020017449) #35	FURIN (ENSOARG00020017222) #36	FES (ENSOARG00020016619) #37	MAN2A2 (ENSOARG00020016456)	HDDC3 (ENSOARG00020016307)	UNC45A (ENSOARG00020015762)
Goat	MODERN SPECIES	13	BNC1 (ENSCHIG00000019726) #10	SH3GL3 (ENSCHIG00000016013) #9	ADAMTSL3 (ENSCHIG00000016050) #8	SAXO2 (ENSCHIG00000007812) #7	EFL1 (ENSCHIG00000001883)	MEX3B (ENSCHIG00000019863)	ENSCHIG00000005722	ENSCHIG00000006667	ENSCHIG00000022311	ENSCHIG00000015479 #14	ENSCHIG00000006828 #15	HOMER2 (ENSCHIG00000014529) #16	WHAMM (ENSCHIG00000014865) #17	FSD2 (ENSCHIG00000022656) #18	AP3B2 (ENSCHIG00000002499) #21	CPEB1 (ENSCHIG00000026000) #22	ENSCHIG00000023561 #23	PDE8A (ENSCHIG00000017618) #24	SLC28A1 (ENSCHIG00000010176) #25	ALPK3 (ENSCHIG00000015898) #26	ZNF592 (ENSCHIG00000014764) #27	SEC11A (ENSCHIG00000000513) #28	NMB (ENSCHIG00000010123) #29	WDR73 (ENSCHIG00000021388) #30	ENSCHIG00000012909	ZSCAN2 (ENSCHIG00000009795) #31	ZNF774 (ENSCHIG00000022555) #32	ENSCHIG00000010682	IQGAP1 (ENSCHIG00000010086) #33	CRTC3 (ENSCHIG00000018523) #34	ENSCHIG00000006931
Bovinae	ANCESTRAL SPECIES	19	ENSGT00940000153942.b.f.b.b.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Bos	ANCESTRAL SPECIES	18	ENSGT00940000153942.b.f.b.b.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Bos_b	ANCESTRAL SPECIES	18	ENSGT00940000153942.b.f.b.b.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143 #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Hybrid Bos Indicus	MODERN SPECIES	13	BNC1 (ENSBIXG00005016055) #10	SH3GL3 (ENSBIXG00005016086) #9	ENSBIXG00005016108	ADAMTSL3 (ENSBIXG00005016225) #8	SAXO2 (ENSBIXG00005016300) #7	EFL1 (ENSBIXG00005016417)	MEX3B (ENSBIXG00005002623)	ENSBIXG00005016459	C15orf40 (ENSBIXG00005016526) #14	ENSBIXG00005002665 #15	HOMER2 (ENSBIXG00005016576) #16	WHAMM (ENSBIXG00005016618) #17	FSD2 (ENSBIXG00005016663) #18	ENSBIXG00005016687 #20	AP3B2 (ENSBIXG00005017179) #21	CPEB1 (ENSBIXG00005017452) #22	RPS17 (ENSBIXG00005017513) #23	PDE8A (ENSBIXG00005017768) #24	SLC28A1 (ENSBIXG00005017982) #25	ALPK3 (ENSBIXG00005002935) #26	SEC11A (ENSBIXG00005018188) #28	WDR73 (ENSBIXG00005018227) #30	ZSCAN2 (ENSBIXG00005018267) #31	IQGAP1 (ENSBIXG00005018469) #33	CRTC3 (ENSBIXG00005005661) #34	BLM (ENSBIXG00005018655) #35	FURIN (ENSBIXG00005003030) #36	FES (ENSBIXG00005000057) #37	MAN2A2 (ENSBIXG00005019060)	HDDC3 (ENSBIXG00005019122)	PRC1 (ENSBIXG00005019198)
Cow	MODERN SPECIES	13	TM6SF1 (ENSBTAG00000012926) #12	HDGFL3 (ENSBTAG00000018527) #11	BNC1 (ENSBTAG00000015462) #10	SH3GL3 (ENSBTAG00000018004) #9	ADAMTSL3 (ENSBTAG00000004645) #8	SAXO2 (ENSBTAG00000003414) #7	EFL1 (ENSBTAG00000003410)	MEX3B (ENSBTAG00000052904)	ENSBTAG00000050976	C21H15orf40 (ENSBTAG00000016522) #14	RAMAC (ENSBTAG00000027069) #15	HOMER2 (ENSBTAG00000017715) #16	WHAMM (ENSBTAG00000017711) #17	FSD2 (ENSBTAG00000015018) #18	AP3B2 (ENSBTAG00000008495) #21	CPEB1 (ENSBTAG00000000623) #22	RPS17 (ENSBTAG00000000622) #23	PDE8A (ENSBTAG00000015909) #24	SLC28A1 (ENSBTAG00000020250) #25	ALPK3 (ENSBTAG00000001618) #26	ZNF592 (ENSBTAG00000001616) #27	SEC11A (ENSBTAG00000011239) #28	WDR73 (ENSBTAG00000001387) #30	ZSCAN2 (ENSBTAG00000001385) #31	ZNF774 (ENSBTAG00000047955) #32	IQGAP1 (ENSBTAG00000013060) #33	CRTC3 (ENSBTAG00000010915) #34	BLM (ENSBTAG00000020301) #35	FURIN (ENSBTAG00000002939) #36	FES (ENSBTAG00000002941) #37	MAN2A2 (ENSBTAG00000018905)
Bos_a	ANCESTRAL SPECIES	10	ENSGT00390000012913.b #12	ENSGT00940000153942.b.f.b.b.a #11	ENSGT00390000005844.a.a #10	ENSGT00940000157398 #9	ENSGT00940000158143.i #8	ENSGT00390000007252.d #7	ENSGT00550000074806	ENSGT00940000160013	ENSGT00940000170401.c	ENSGT00390000012420.e #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36	ENSGT00940000158881 #37
Wild yak	MODERN SPECIES	54					ENSBMUG00000006685 #8	SAXO2 (ENSBMUG00000006693) #7	EFL1 (ENSBMUG00000006707)	MEX3B (ENSBMUG00000006725)	ENSBMUG00000006727	ENSBMUG00000006736 #14	ENSBMUG00000006744 #15	HOMER2 (ENSBMUG00000006750) #16	WHAMM (ENSBMUG00000006758) #17	FSD2 (ENSBMUG00000006772) #18	AP3B2 (ENSBMUG00000006849) #21	CPEB1 (ENSBMUG00000006933) #22	RPS17 (ENSBMUG00000006976) #23	PDE8A (ENSBMUG00000007032) #24
Domestic yak	MODERN SPECIES	8	ENSBGRG00000017511	TM6SF1 (ENSBGRG00000017242) #12	HDGFL3 (ENSBGRG00000017033) #11	BNC1 (ENSBGRG00000016740) #10	SH3GL3 (ENSBGRG00000016514) #9	ADAMTSL3 (ENSBGRG00000015743) #8	SAXO2 (ENSBGRG00000015606) #7	EFL1 (ENSBGRG00000015240)	MEX3B (ENSBGRG00000015184)	ENSBGRG00000015162	ENSBGRG00000015094 #14	HOMER2 (ENSBGRG00000014750) #16	WHAMM (ENSBGRG00000014627) #17	FSD2 (ENSBGRG00000014501) #18	AP3B2 (ENSBGRG00000013284) #21	CPEB1 (ENSBGRG00000012385) #22	PDE8A (ENSBGRG00000011699) #24	SLC28A1 (ENSBGRG00000011452) #25	ENSBGRG00000011365 #26	ZNF592 (ENSBGRG00000011208) #27	SEC11A (ENSBGRG00000010642) #28	NMB (ENSBGRG00000010547) #29	WDR73 (ENSBGRG00000010463) #30	ENSBGRG00000010423	ZSCAN2 (ENSBGRG00000010340) #31	ZNF774 (ENSBGRG00000010300) #32	ENSBGRG00000010283 #32	IQGAP1 (ENSBGRG00000009693) #33	CRTC3 (ENSBGRG00000009614) #34	BLM (ENSBGRG00000009348) #35	FURIN (ENSBGRG00000009175) #36
American bison	MODERN SPECIES	3078										ENSBBBG00000005971 #14	ENSBBBG00000007477 #15	HOMER2 (ENSBBBG00000022719) #16	WHAMM (ENSBBBG00000022735) #17	FSD2 (ENSBBBG00000022770) #18	AP3B2 (ENSBBBG00000007478) #21	CPEB1 (ENSBBBG00000023151) #22	RPS17 (ENSBBBG00000023176) #23	PDE8A (ENSBBBG00000023188) #24	SLC28A1 (ENSBBBG00000023281) #25	ENSBBBG00000023300 #26	ZNF592 (ENSBBBG00000023346) #27	SEC11A (ENSBBBG00000023396) #28	NMB (ENSBBBG00000023422) #29	WDR73 (ENSBBBG00000023452) #30	ZSCAN2 (ENSBBBG00000023463) #31	ZNF774 (ENSBBBG00000023473) #32	IQGAP1 (ENSBBBG00000023592) #33	CRTC3 (ENSBBBG00000006175) #34	BLM (ENSBBBG00000023708) #35	FURIN (ENSBBBG00000006188) #36	FES (ENSBBBG00000006199) #37
Yarkand deer	MODERN SPECIES	4	BNC1 (ENSCHYG00000006034) #10	SH3GL3 (ENSCHYG00000005917) #9	ADAMTSL3 (ENSCHYG00000005510) #8	SAXO2 (ENSCHYG00000005376) #7	EFL1 (ENSCHYG00000005221)	MEX3B (ENSCHYG00000005181)	ENSCHYG00000005151	C15orf40 (ENSCHYG00000005100) #14	ENSCHYG00000005070 #15	HOMER2 (ENSCHYG00000005052) #16	WHAMM (ENSCHYG00000023553) #17	FSD2 (ENSCHYG00000023468) #18	ENSCHYG00000023417 #20	AP3B2 (ENSCHYG00000022700) #21	ENSCHYG00000022571	CPEB1 (ENSCHYG00000022409) #22	ENSCHYG00000022325 #23	PDE8A (ENSCHYG00000021218) #24	SLC28A1 (ENSCHYG00000020881) #25	ALPK3 (ENSCHYG00000020673) #26	ZNF592 (ENSCHYG00000020593) #27	ENSCHYG00000020419 #28	NMB (ENSCHYG00000020317) #29	WDR73 (ENSCHYG00000020215) #30	ZSCAN2 (ENSCHYG00000020158) #31	ZNF774 (ENSCHYG00000020090) #32	IQGAP1 (ENSCHYG00000019335) #33	CRTC3 (ENSCHYG00000018951) #34	BLM (ENSCHYG00000018757) #35	FURIN (ENSCHYG00000018618) #36	FES (ENSCHYG00000017785) #37
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00940000163116 #32	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000156800 #35	ENSGT00940000157220 #36
Xenarthra	ANCESTRAL SPECIES	260		ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22
Sloth	MODERN SPECIES	7730																ENSCHOG00000004670 #22
Armadillo	MODERN SPECIES	2891	ENSDNOG00000035783	EFL1 (ENSDNOG00000006097)	SAXO2 (ENSDNOG00000031995) #7	ADAMTSL3 (ENSDNOG00000002361) #8	SH3GL3 (ENSDNOG00000049173) #9	BNC1 (ENSDNOG00000010537) #10	TM6SF1 (ENSDNOG00000039482) #12	ENSDNOG00000006094 #13	ENSDNOG00000004462 #14	ENSDNOG00000044526 #15	ENSDNOG00000046811 #16	WHAMM (ENSDNOG00000004280) #17	FSD2 (ENSDNOG00000004267) #18	AP3B2 (ENSDNOG00000043347) #21	ENSDNOG00000033860	CPEB1 (ENSDNOG00000024571) #22	ENSDNOG00000047975	ENSDNOG00000032088	ENSDNOG00000010836
Afrotheria	ANCESTRAL SPECIES	20	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Afrotheria_a	ANCESTRAL SPECIES	19	ENSGT00940000160013	ENSGT00550000074806	ENSGT00390000007252.d #7	ENSGT00940000158143 #8	ENSGT00940000157398 #9	ENSGT00390000005844.a.a #10	ENSGT00940000153942.b #11	ENSGT00390000012913.b #12	ENSGT00940000156756 #13	ENSGT00390000012420 #14	ENSGT00390000011190 #15	ENSGT00940000157324 #16	ENSGT00510000046704.b.b #17	ENSGT00940000158441 #18	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000156422 #24	ENSGT00390000016025.b.g #25	ENSGT00940000158534.d #26	ENSGT00940000158357 #27	ENSGT00390000015600.c.a #28	ENSGT00940000154470.b #29	ENSGT00390000015701 #30	ENSGT00940000154740.a.a.d	ENSGT00940000161710 #31	ENSGT00950000183076.a.b.b.a.a #33	ENSGT00390000010652.C #34	ENSGT00940000157220 #36	ENSGT00940000158881 #37	ENSGT01030000234638.b.b.c.a
Elephant	MODERN SPECIES	285	EFL1 (ENSLAFG00000012504)	SAXO2 (ENSLAFG00000008140) #7	ENSLAFG00000001184 #8	ENSLAFG00000025684 #8	SH3GL3 (ENSLAFG00000001182) #9	BNC1 (ENSLAFG00000000536) #10	HDGFL3 (ENSLAFG00000002512) #11	TM6SF1 (ENSLAFG00000002508) #12	BTBD1 (ENSLAFG00000002505) #13	C15orf40 (ENSLAFG00000014381) #14	ENSLAFG00000008134 #15	HOMER2 (ENSLAFG00000006706) #16	WHAMM (ENSLAFG00000010645) #17	FSD2 (ENSLAFG00000008089) #18	AP3B2 (ENSLAFG00000014765) #21	CPEB1 (ENSLAFG00000020795) #22	ENSLAFG00000031717 #23	PDE8A (ENSLAFG00000012422) #24	SLC28A1 (ENSLAFG00000012416) #25	ALPK3 (ENSLAFG00000012401) #26	ZNF592 (ENSLAFG00000012391) #27	SEC11A (ENSLAFG00000017084) #28	NMB (ENSLAFG00000010107) #29	WDR73 (ENSLAFG00000010104) #30	ENSLAFG00000031866	ZSCAN2 (ENSLAFG00000001521) #31	IQGAP1 (ENSLAFG00000016736) #33	CRTC3 (ENSLAFG00000001143) #34	ENSLAFG00000009335	FURIN (ENSLAFG00000003407) #36	FES (ENSLAFG00000005977) #37
Hyrax	MODERN SPECIES	7301																CPEB1 (ENSPCAG00000009659) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00940000163538	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000157996.d	ENSGT00940000161927	ENSGT00940000161044	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684	ENSGT00940000156026
Opossum	MODERN SPECIES		GHITM (ENSMODG00000001693)	CDHR1 (ENSMODG00000001715)	LRIT2 (ENSMODG00000001718)	LRIT1 (ENSMODG00000001729)	ENSMODG00000025724	HEXA (ENSMODG00000001771)	CELF6 (ENSMODG00000001784)	PARP6 (ENSMODG00000001875)	PKM (ENSMODG00000001895)	GRAMD2A (ENSMODG00000001901)	SENP8 (ENSMODG00000001905)	MYO9A (ENSMODG00000001934)	NR2E3 (ENSMODG00000001949)	ENSMODG00000038911 #21	ENSMODG00000001982 #21	CPEB1 (ENSMODG00000002000) #22	ENSMODG00000002011 #23	ENSMODG00000025043	ENSMODG00000025042	ENSMODG00000002047	ENSMODG00000002061	ENSMODG00000025038	RBP3 (ENSMODG00000002069)	GDF2 (ENSMODG00000045485)	GDF10 (ENSMODG00000002085)	ENSMODG00000002124	ENSMODG00000041433	MAPK8 (ENSMODG00000002193)	ARHGAP22 (ENSMODG00000002216)	WDFY4 (ENSMODG00000002305)	LRRC18 (ENSMODG00000002315)
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00940000163538	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000157996.d	ENSGT00940000161927	ENSGT00940000161044	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684	ENSGT00940000156026
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00940000163538	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000157996.d	ENSGT00940000161927	ENSGT00940000161044	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684	ENSGT00940000156026
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00940000156754.a.b	ENSGT01050000244940.a.b	ENSGT00940000155509	ENSGT00940000159143	ENSGT00940000156033	ENSGT00940000163538	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b.k #23	ENSGT00940000157996.d	ENSGT00940000161927	ENSGT00940000161044	ENSGT00940000157727	ENSGT00890000139463.b.a	ENSGT00390000014726	ENSGT00940000159802	ENSGT00940000157214	ENSGT00940000160066	ENSGT00940000161964	ENSGT00940000153692.B	ENSGT00950000183015.B.b	ENSGT00940000155684	ENSGT00940000156026
Common wonbat	MODERN SPECIES	39	ENSVURG00010014590	ENSVURG00010014606	GHITM (ENSVURG00010014631)	CDHR1 (ENSVURG00010014698)	LRIT2 (ENSVURG00010015038)	LRIT1 (ENSVURG00010015050)	ENSVURG00010015064	HEXA (ENSVURG00010015073)	CELF6 (ENSVURG00010015096)	PARP6 (ENSVURG00010015132)	PKM (ENSVURG00010015198)	GRAMD2A (ENSVURG00010015525)	MYO9A (ENSVURG00010015564)	NR2E3 (ENSVURG00010015699)	AP3B2 (ENSVURG00010015730) #21	CPEB1 (ENSVURG00010015831) #22	ENSVURG00010015848 #23	ENSVURG00010015855	ENSVURG00010015857	ENSVURG00010015873	ENSVURG00010015902	ENSVURG00010015918	RBP3 (ENSVURG00010015929)	GDF2 (ENSVURG00010015940)	GDF10 (ENSVURG00010015944)	ENSVURG00010015952	ENSVURG00010015960	MAPK8 (ENSVURG00010015987)	ARHGAP22 (ENSVURG00010016006)	ENSVURG00010016020	WDFY4 (ENSVURG00010016041)
koala	MODERN SPECIES	65	ENSPCIG00000012847	GHITM (ENSPCIG00000016328)	CDHR1 (ENSPCIG00000016322)	LRIT2 (ENSPCIG00000016320)	LRIT1 (ENSPCIG00000016317)	ENSPCIG00000016315	HEXA (ENSPCIG00000016313)	CELF6 (ENSPCIG00000016305)	PARP6 (ENSPCIG00000016293)	PKM (ENSPCIG00000016282)	GRAMD2A (ENSPCIG00000016269)	SENP8 (ENSPCIG00000016266)	MYO9A (ENSPCIG00000001320)	NR2E3 (ENSPCIG00000000265)	AP3B2 (ENSPCIG00000000210) #21	CPEB1 (ENSPCIG00000000159) #22	RPS17 (ENSPCIG00000000115) #23	ENSPCIG00000030180	ENSPCIG00000019589	ENSPCIG00000019582	ENSPCIG00000000478	ENSPCIG00000022929	RBP3 (ENSPCIG00000022924)	GDF2 (ENSPCIG00000022922)	GDF10 (ENSPCIG00000032946)	ENSPCIG00000035316	ENSPCIG00000030154	MAPK8 (ENSPCIG00000027049)	ARHGAP22 (ENSPCIG00000027048)	ENSPCIG00000032500	LRRC18 (ENSPCIG00000034614)
Wallaby	MODERN SPECIES	63																CPEB1 (ENSMEUG00000016516) #22
Tasmanian devil	MODERN SPECIES	1	GHITM (ENSSHAG00000006696)	CDHR1 (ENSSHAG00000007398)	LRIT2 (ENSSHAG00000008000)	ENSSHAG00000008172	ENSSHAG00000008356	ENSSHAG00000008471	ENSSHAG00000025448	ENSSHAG00000009905	ENSSHAG00000010300	GRAMD2A (ENSSHAG00000027117)	SENP8 (ENSSHAG00000025682)	ENSSHAG00000004472	ENSSHAG00000011916	ENSSHAG00000027977	ENSSHAG00000013373 #21	ENSSHAG00000013722 #22	ENSSHAG00000014004 #23	ENSSHAG00000030751	ENSSHAG00000024592	ENSSHAG00000014681	ENSSHAG00000015042	ENSSHAG00000015538	ENSSHAG00000015585	GDF2 (ENSSHAG00000028546)	GDF10 (ENSSHAG00000024002)	ENSSHAG00000028507	ENSSHAG00000017354	MAPK8 (ENSSHAG00000017573)	ARHGAP22 (ENSSHAG00000017676)	LRRC18 (ENSSHAG00000025829)	WDFY4 (ENSSHAG00000018235)
Platypus	MODERN SPECIES	16	REC114 (ENSOANG00000047847)	HCN4 (ENSOANG00000047521)	NEO1 (ENSOANG00000001009)	ADPGK (ENSOANG00000013818)	BBS4 (ENSOANG00000013819)	ARIH1 (ENSOANG00000013820)	HEXA (ENSOANG00000013821)	CELF6 (ENSOANG00000011308)	PARP6 (ENSOANG00000011312)	PKM (ENSOANG00000005173)	ENSOANG00000036970	SENP8 (ENSOANG00000001976)	MYO9A (ENSOANG00000013363)	NR2E3 (ENSOANG00000003155)	ENSOANG00000036588 #21	CPEB1 (ENSOANG00000013361) #22	RPS17 (ENSOANG00000013360) #23	RBPMS2 (ENSOANG00000044956)	OAZ2 (ENSOANG00000013359)	ZNF609 (ENSOANG00000044888)	TRIP4 (ENSOANG00000013357)	ENSOANG00000013356	CSNK1G1 (ENSOANG00000013355)	PPIB (ENSOANG00000013354)	ENSOANG00000041082	SNX1 (ENSOANG00000020925)	CIAO2A (ENSOANG00000009232)	DAPK2 (ENSOANG00000048356)	HERC1 (ENSOANG00000011146)	FBXL22 (ENSOANG00000049762)	USP3 (ENSOANG00000011148)
Sauria	ANCESTRAL SPECIES	10	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336
Lepidosauria	ANCESTRAL SPECIES	43	ENSGT00940000156195	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000165013	ENSGT00940000160707.b
Episquamata	ANCESTRAL SPECIES	9	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336
Laterata	ANCESTRAL SPECIES	16	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00950000182812.F.b	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b
Argentine black and white tegu	MODERN SPECIES	46	TMOD3 (ENSSMRG00000022335)	LEO1 (ENSSMRG00000022334)	MAPK6 (ENSSMRG00000022333)	ENSSMRG00000022332	GNB5 (ENSSMRG00000022331)	MYO5C (ENSSMRG00000022330)	MYO5A (ENSSMRG00000022329)	ARPP19 (ENSSMRG00000022328)	ATOSA (ENSSMRG00000022327)	PKM (ENSSMRG00000022326)	GRAMD2A (ENSSMRG00000022325)	SENP8 (ENSSMRG00000022324)	MYO9A (ENSSMRG00000022323)	NR2E3 (ENSSMRG00000022322)	AP3B2 (ENSSMRG00000022321) #21	CPEB1 (ENSSMRG00000022320) #22	BCL2A1 (ENSSMRG00000022319)	MTHFS (ENSSMRG00000022318)	MINAR1 (ENSSMRG00000022317)	WDR93 (ENSSMRG00000022316)	PEX11A (ENSSMRG00000022315)	ENSSMRG00000022314	ENSSMRG00000022313	ENSSMRG00000022312	KIF7 (ENSSMRG00000022311)	TICRR (ENSSMRG00000022310)	RHCG (ENSSMRG00000022309)	POLG (ENSSMRG00000022305)	FANCI (ENSSMRG00000022304)	RLBP1 (ENSSMRG00000022303)	ABHD2 (ENSSMRG00000022302)
Common wall lizard	MODERN SPECIES	5	ENSPMRG00000022575	LEO1 (ENSPMRG00000022571)	MAPK6 (ENSPMRG00000022564)	BCL2L10 (ENSPMRG00000022559)	GNB5 (ENSPMRG00000022546)	MYO5C (ENSPMRG00000020906)	MYO5A (ENSPMRG00000018092)	ARPP19 (ENSPMRG00000017689)	ATOSA (ENSPMRG00000017681)	PKM (ENSPMRG00000017617)	GRAMD2A (ENSPMRG00000017590)	SENP8 (ENSPMRG00000017584)	MYO9A (ENSPMRG00000017442)	NR2E3 (ENSPMRG00000017390)	AP3B2 (ENSPMRG00000015532) #21	CPEB1 (ENSPMRG00000015272) #22	ENSPMRG00000015265	RPS17 (ENSPMRG00000015254) #23	ENSPMRG00000015246	ENSPMRG00000015243	ENSPMRG00000015241	RBPMS2 (ENSPMRG00000015238)	OAZ2 (ENSPMRG00000015229)	ZNF609 (ENSPMRG00000015222)	ENSPMRG00000015215	TRIP4 (ENSPMRG00000015199)	ENSPMRG00000015173	ENSPMRG00000015137	SNX1 (ENSPMRG00000015127)	PATL2 (ENSPMRG00000015119)	ENSPMRG00000015115
Toxicofera	ANCESTRAL SPECIES	15	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781
Elapidae	ANCESTRAL SPECIES	12	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00950000182812.F.b	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628.c	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336
Indian cobra	MODERN SPECIES	14	TMOD3 (ENSNNAG00000018589)	LEO1 (ENSNNAG00000018584)	MAPK6 (ENSNNAG00000018578)	ENSNNAG00000018575	ENSNNAG00000018570	ENSNNAG00000018565	MYO5C (ENSNNAG00000018317)	MYO5A (ENSNNAG00000017325)	ARPP19 (ENSNNAG00000017109)	ATOSA (ENSNNAG00000016987)	PKM (ENSNNAG00000016964)	ENSNNAG00000016953	MYO9A (ENSNNAG00000016912)	NR2E3 (ENSNNAG00000016855)	AP3B2 (ENSNNAG00000012594) #21	CPEB1 (ENSNNAG00000012215) #22	ENSNNAG00000012149	RPS17 (ENSNNAG00000012013) #23	ENSNNAG00000011992	ENSNNAG00000011963	RBPMS2 (ENSNNAG00000011929)	ENSNNAG00000011856	ZNF609 (ENSNNAG00000011817)	TRIP4 (ENSNNAG00000011799)	PCLAF (ENSNNAG00000011779)	CSNK1G1 (ENSNNAG00000011705)	PPIB (ENSNNAG00000011686)	SNX22 (ENSNNAG00000011655)	SNX1 (ENSNNAG00000011615)	ENSNNAG00000011594	PATL2 (ENSNNAG00000011560)
Elapidae_a	ANCESTRAL SPECIES	17	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b.a	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00950000182812.F.b	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b.c	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628.c	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336
Acanthophiinae	ANCESTRAL SPECIES	17	ENSGT00940000158280	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971	ENSGT00940000155347.a.b.a	ENSGT00940000154555	ENSGT00940000157573	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00940000158086	ENSGT00940000157725	ENSGT00390000008748.b.c	ENSGT00390000005300	ENSGT00510000048252	ENSGT00940000155628.c	ENSGT00940000158007	ENSGT00390000001280.a	ENSGT00940000155889	ENSGT00520000055649.b	ENSGT00690000102227	ENSGT00940000160707.b	ENSGT00390000012336	ENSGT00550000074781
Eastern brown snake	MODERN SPECIES	44	ENSPTXG00000011836	TMOD3 (ENSPTXG00000011837)	LEO1 (ENSPTXG00000011839)	MAPK6 (ENSPTXG00000011840)	GNB5 (ENSPTXG00000011841)	MYO5C (ENSPTXG00000011844)	MYO5A (ENSPTXG00000012559)	ARPP19 (ENSPTXG00000013225)	ATOSA (ENSPTXG00000013227)	PKM (ENSPTXG00000013229)	GRAMD2A (ENSPTXG00000013230)	SENP8 (ENSPTXG00000013232)	MYO9A (ENSPTXG00000013233)	NR2E3 (ENSPTXG00000013235)	AP3B2 (ENSPTXG00000013253) #21	CPEB1 (ENSPTXG00000013254) #22	RPS17 (ENSPTXG00000013255) #23	RBPMS2 (ENSPTXG00000013260)	OAZ2 (ENSPTXG00000013261)	ZNF609 (ENSPTXG00000013262)	TRIP4 (ENSPTXG00000013263)	PCLAF (ENSPTXG00000013264)	CSNK1G1 (ENSPTXG00000013265)	PPIB (ENSPTXG00000013266)	SNX22 (ENSPTXG00000013267)	SNX1 (ENSPTXG00000013269)	PATL2 (ENSPTXG00000013270)	B2M (ENSPTXG00000013271)	TRIM69 (ENSPTXG00000013272)	TERB2 (ENSPTXG00000013273)	SORD (ENSPTXG00000013274)
Mainland tiger snake	MODERN SPECIES	217	MAPK6 (ENSNSUG00000019454)	ENSNSUG00000019455	ENSNSUG00000019456	ENSNSUG00000019457	ENSNSUG00000019458	ENSNSUG00000019459	MYO5A (ENSNSUG00000019460)	ARPP19 (ENSNSUG00000019461)	ATOSA (ENSNSUG00000019462)	PKM (ENSNSUG00000019463)	GRAMD2A (ENSNSUG00000019464)	SENP8 (ENSNSUG00000019465)	MYO9A (ENSNSUG00000019466)	NR2E3 (ENSNSUG00000019470)	AP3B2 (ENSNSUG00000019482) #21	CPEB1 (ENSNSUG00000019483) #22	RPS17 (ENSNSUG00000019484) #23	ENSNSUG00000019488	ENSNSUG00000019489	RBPMS2 (ENSNSUG00000019490)	OAZ2 (ENSNSUG00000019491)	ZNF609 (ENSNSUG00000019492)	TRIP4 (ENSNSUG00000019493)	ENSNSUG00000019494	ENSNSUG00000019495	ENSNSUG00000019496	PPIB (ENSNSUG00000019497)	SNX22 (ENSNSUG00000019498)	SNX1 (ENSNSUG00000019499)	PATL2 (ENSNSUG00000019500)	B2M (ENSNSUG00000019502)
Blue-lipped sea krait	MODERN SPECIES	5662																CPEB1 (ENSLLTG00000009600) #22
Lizard	MODERN SPECIES	1091					GNB5 (ENSACAG00000010868)	MYO5C (ENSACAG00000029269)	MYO5A (ENSACAG00000010982)	ARPP19 (ENSACAG00000023267)	ATOSA (ENSACAG00000011388)	PKM (ENSACAG00000011445)	GRAMD2A (ENSACAG00000011536)	SENP8 (ENSACAG00000011545)	MYO9A (ENSACAG00000011552)	NR2E3 (ENSACAG00000011910)	AP3B2 (ENSACAG00000011959) #21	ENSACAG00000026968 #22	ENSACAG00000012225 #23	ENSACAG00000012227
tuatara	MODERN SPECIES	1821															ENSSPUG00000005987 #21	CPEB1 (ENSSPUG00000006288) #22	RPS17 (ENSSPUG00000006343) #23	RBPMS2 (ENSSPUG00000006378)	OAZ2 (ENSSPUG00000006399)	ENSSPUG00000006465	ENSSPUG00000006587
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00390000007235	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905.h	ENSGT00940000156926	ENSGT01050000247788	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905.h	ENSGT00940000156926	ENSGT01050000247788	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Abingdon island giant tortoise	MODERN SPECIES	1599										SENP8 (ENSCABG00000021368)	MYO9A (ENSCABG00000021370)	NR2E3 (ENSCABG00000021376)	ENSCABG00000021379	ENSCABG00000021381	AP3B2 (ENSCABG00000021428) #21	CPEB1 (ENSCABG00000021531) #22	RPS17 (ENSCABG00000021535) #23	TERB2 (ENSCABG00000021545)	TRIM69 (ENSCABG00000021548)	B2M (ENSCABG00000021550)	PATL2 (ENSCABG00000021552)	SNX1 (ENSCABG00000021554)	PPIB (ENSCABG00000021557)	CSNK1G1 (ENSCABG00000021559)	PCLAF (ENSCABG00000021573)	TRIP4 (ENSCABG00000021575)	ZNF609 (ENSCABG00000021576)	OAZ2 (ENSCABG00000021577)	RBPMS2 (ENSCABG00000021579)
Goode s thornscrub tortoise	MODERN SPECIES	1	BBS4 (ENSGEVG00005004180)	ARIH1 (ENSGEVG00005004142)	HEXA (ENSGEVG00005017585)	CELF6 (ENSGEVG00005017515)	ENSGEVG00005017494	PARP6 (ENSGEVG00005017418)	PKM (ENSGEVG00005017384)	GRAMD2A (ENSGEVG00005017335)	SENP8 (ENSGEVG00005017311)	MYO9A (ENSGEVG00005017160)	NR2E3 (ENSGEVG00005016980)	ENSGEVG00005016947	ENSGEVG00005016906	ENSGEVG00005016719	AP3B2 (ENSGEVG00005016591) #21	CPEB1 (ENSGEVG00005016309) #22	ENSGEVG00005016221 #23	ENSGEVG00005016096 #23	TERB2 (ENSGEVG00005016042)	TRIM69 (ENSGEVG00005016021)	B2M (ENSGEVG00005016002)	PATL2 (ENSGEVG00005015967)	SNX1 (ENSGEVG00005015924)	SNX22 (ENSGEVG00005015851)	PPIB (ENSGEVG00005015831)	CSNK1G1 (ENSGEVG00005015781)	PCLAF (ENSGEVG00005015756)	TRIP4 (ENSGEVG00005015722)	ZNF609 (ENSGEVG00005015702)	OAZ2 (ENSGEVG00005015669)	RBPMS2 (ENSGEVG00005015626)
Emydidae	ANCESTRAL SPECIES	38	ENSGT00940000154743.B	ENSGT00940000156684.ib	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905.h	ENSGT00940000156926	ENSGT01050000247788	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
painted turtle	MODERN SPECIES	1	ENSCPBG00000008664	HCN4 (ENSCPBG00000008657)	ENSCPBG00000006407	ADPGK (ENSCPBG00000006389)	BBS4 (ENSCPBG00000006376)	ARIH1 (ENSCPBG00000006369)	HEXA (ENSCPBG00000006363)	CELF6 (ENSCPBG00000006359)	PARP6 (ENSCPBG00000006347)	PKM (ENSCPBG00000006337)	GRAMD2A (ENSCPBG00000006327)	SENP8 (ENSCPBG00000006323)	MYO9A (ENSCPBG00000006272)	NR2E3 (ENSCPBG00000006244)	AP3B2 (ENSCPBG00000006215) #21	CPEB1 (ENSCPBG00000006202) #22	RPS17 (ENSCPBG00000006188) #23	TERB2 (ENSCPBG00000006173)	ENSCPBG00000006168	B2M (ENSCPBG00000006165)	PATL2 (ENSCPBG00000006150)	ENSCPBG00000006146	SNX1 (ENSCPBG00000006140)	SNX22 (ENSCPBG00000006131)	PPIB (ENSCPBG00000006124)	ENSCPBG00000006120	CSNK1G1 (ENSCPBG00000006107)	TRIP4 (ENSCPBG00000006093)	ZNF609 (ENSCPBG00000006076)	OAZ2 (ENSCPBG00000006067)	ENSCPBG00000006062
Three-toed box turtle	MODERN SPECIES	27	ADPGK (ENSTMTG00000008365)	BBS4 (ENSTMTG00000008412)	ARIH1 (ENSTMTG00000008767)	HEXA (ENSTMTG00000008789)	CELF6 (ENSTMTG00000008830)	ENSTMTG00000008871	PARP6 (ENSTMTG00000013401)	PKM (ENSTMTG00000013498)	GRAMD2A (ENSTMTG00000013518)	SENP8 (ENSTMTG00000013528)	MYO9A (ENSTMTG00000013663)	NR2E3 (ENSTMTG00000015576)	ENSTMTG00000015603	ENSTMTG00000015613 #21	ENSTMTG00000015629 #21	CPEB1 (ENSTMTG00000015677) #22	RPS17 (ENSTMTG00000015889) #23	TERB2 (ENSTMTG00000015911)	TRIM69 (ENSTMTG00000015954)	B2M (ENSTMTG00000015984)	PATL2 (ENSTMTG00000015996)	SNX1 (ENSTMTG00000016024)	SNX22 (ENSTMTG00000016052)	PPIB (ENSTMTG00000016076)	CSNK1G1 (ENSTMTG00000016090)	PCLAF (ENSTMTG00000016140)	TRIP4 (ENSTMTG00000016161)	ZNF609 (ENSTMTG00000016202)	OAZ2 (ENSTMTG00000016229)	RBPMS2 (ENSTMTG00000016246)	SORD (ENSTMTG00000016286)
Chinese turtle	MODERN SPECIES	1436																CPEB1 (ENSPSIG00000016717) #22	RPS17 (ENSPSIG00000017041) #23	TERB2 (ENSPSIG00000017433)	TRIM69 (ENSPSIG00000017564)	B2M (ENSPSIG00000017643)	PATL2 (ENSPSIG00000017690)	SNX1 (ENSPSIG00000007142)	PPIB (ENSPSIG00000009579)	CSNK1G1 (ENSPSIG00000009861)	TRIP4 (ENSPSIG00000012082)	ZNF609 (ENSPSIG00000012633)	OAZ2 (ENSPSIG00000012912)	RBPMS2 (ENSPSIG00000013115)	SORD (ENSPSIG00000013592)	ENSPSIG00000001497	DUOX2 (ENSPSIG00000015528)
Archosauria	ANCESTRAL SPECIES	9	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00940000160707.b	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Aves	ANCESTRAL SPECIES	14	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k
Neognathae	ANCESTRAL SPECIES	11	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Great tit	MODERN SPECIES	1	HCN4 (ENSPMJG00000007543)	NEO1 (ENSPMJG00000007535)	ADPGK (ENSPMJG00000007516)	BBS4 (ENSPMJG00000007513)	ARIH1 (ENSPMJG00000007444)	HEXA (ENSPMJG00000007430)	CELF6 (ENSPMJG00000007429)	PARP6 (ENSPMJG00000007427)	PKM (ENSPMJG00000007426)	GRAMD2A (ENSPMJG00000007420)	SENP8 (ENSPMJG00000007419)	MYO9A (ENSPMJG00000007368)	NR2E3 (ENSPMJG00000007347)	ENSPMJG00000007339 #20	AP3B2 (ENSPMJG00000007328) #21	CPEB1 (ENSPMJG00000007322) #22	RPS17 (ENSPMJG00000007315) #23	TERB2 (ENSPMJG00000007314)	B2M (ENSPMJG00000007309)	PATL2 (ENSPMJG00000007304)	SNX1 (ENSPMJG00000007292)	PPIB (ENSPMJG00000007287)	CSNK1G1 (ENSPMJG00000007285)	ENSPMJG00000007282	TRIP4 (ENSPMJG00000007276)	ZNF609 (ENSPMJG00000007270)	OAZ2 (ENSPMJG00000007263)	RBPMS2 (ENSPMJG00000007255)	SORD (ENSPMJG00000007244)	DUOX2 (ENSPMJG00000007237)	ENSPMJG00000007236
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000156684.lb	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Medium ground finch	MODERN SPECIES	101	NEO1 (ENSGFOG00000001097)	ADPGK (ENSGFOG00000000931)	ENSGFOG00000000914	ENSGFOG00000000898	ARIH1 (ENSGFOG00000000886)	HEXA (ENSGFOG00000000786)	CELF6 (ENSGFOG00000000749)	PARP6 (ENSGFOG00000000426)	PKM (ENSGFOG00000000352)	GRAMD2A (ENSGFOG00000000336)	SENP8 (ENSGFOG00000000328)	MYO9A (ENSGFOG00000000296)	NR2E3 (ENSGFOG00000000261)	ENSGFOG00000000254 #20	AP3B2 (ENSGFOG00000000235) #21	CPEB1 (ENSGFOG00000000218) #22	RPS17 (ENSGFOG00000000211) #23	TERB2 (ENSGFOG00000000206)	B2M (ENSGFOG00000000200)	PATL2 (ENSGFOG00000000196)	SNX1 (ENSGFOG00000000166)	SNX22 (ENSGFOG00000000147)	PPIB (ENSGFOG00000000138)	CSNK1G1 (ENSGFOG00000000130)	TRIP4 (ENSGFOG00000000123)	ZNF609 (ENSGFOG00000000116)	OAZ2 (ENSGFOG00000000113)	RBPMS2 (ENSGFOG00000009914)	SORD (ENSGFOG00000009907)	DUOX2 (ENSGFOG00000009867)	ENSGFOG00000009853
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000156684.kb.a	ENSGT00940000156684.lb	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Zebra finch	MODERN SPECIES	1	ENSTGUG00000004132	HCN4 (ENSTGUG00000004104)	ADPGK (ENSTGUG00000019070)	BBS4 (ENSTGUG00000004195)	ARIH1 (ENSTGUG00000004209)	HEXA (ENSTGUG00000004228)	CELF6 (ENSTGUG00000004278)	PARP6 (ENSTGUG00000004303)	PKM (ENSTGUG00000004376)	GRAMD2A (ENSTGUG00000004416)	SENP8 (ENSTGUG00000024203)	MYO9A (ENSTGUG00000004424)	NR2E3 (ENSTGUG00000004498)	ENSTGUG00000004515 #20	AP3B2 (ENSTGUG00000004517) #21	CPEB1 (ENSTGUG00000004564) #22	RPS17 (ENSTGUG00000004581) #23	TERB2 (ENSTGUG00000004600)	ENSTGUG00000004607	PATL2 (ENSTGUG00000004619)	SNX1 (ENSTGUG00000004631)	PPIB (ENSTGUG00000014219)	CSNK1G1 (ENSTGUG00000004638)	ENSTGUG00000029750	TRIP4 (ENSTGUG00000004673)	ZNF609 (ENSTGUG00000004705)	OAZ2 (ENSTGUG00000004712)	RBPMS2 (ENSTGUG00000004722)	SORD (ENSTGUG00000004734)	DUOX2 (ENSTGUG00000004765)	ENSTGUG00000004837
Common canary	MODERN SPECIES	12	DUOX2 (ENSSCAG00000016330)	SORD (ENSSCAG00000016323)	ENSSCAG00000016244	ADPGK (ENSSCAG00000016191)	BBS4 (ENSSCAG00000016188)	ARIH1 (ENSSCAG00000016182)	HEXA (ENSSCAG00000016171)	CELF6 (ENSSCAG00000016162)	PARP6 (ENSSCAG00000016161)	PKM (ENSSCAG00000016160)	GRAMD2A (ENSSCAG00000016157)	SENP8 (ENSSCAG00000016155)	MYO9A (ENSSCAG00000015994)	NR2E3 (ENSSCAG00000015929)	AP3B2 (ENSSCAG00000015923) #21	CPEB1 (ENSSCAG00000015919) #22	RPS17 (ENSSCAG00000015912) #23	TERB2 (ENSSCAG00000015906)	B2M (ENSSCAG00000015902)	PATL2 (ENSSCAG00000015896)	SNX1 (ENSSCAG00000015891)	SNX22 (ENSSCAG00000015890)	PPIB (ENSSCAG00000015887)	CSNK1G1 (ENSSCAG00000015883)	ENSSCAG00000015880	TRIP4 (ENSSCAG00000015875)	ZNF609 (ENSSCAG00000015873)	OAZ2 (ENSSCAG00000015871)	RBPMS2 (ENSSCAG00000015868)
Flycatcher	MODERN SPECIES	1	NEO1 (ENSFALG00000009473)	ENSFALG00000023844	ADPGK (ENSFALG00000009511)	BBS4 (ENSFALG00000009529)	ARIH1 (ENSFALG00000009549)	HEXA (ENSFALG00000009562)	CELF6 (ENSFALG00000009584)	ENSFALG00000009616	ENSFALG00000023314	PKM (ENSFALG00000009648)	GRAMD2A (ENSFALG00000009667)	MYO9A (ENSFALG00000009679)	NR2E3 (ENSFALG00000009699)	ENSFALG00000009710 #20	AP3B2 (ENSFALG00000009725) #21	ENSFALG00000009745 #22	RPS17 (ENSFALG00000009753) #23	ENSFALG00000009750	ENSFALG00000009762	PATL2 (ENSFALG00000009768)	SNX1 (ENSFALG00000009777)	SNX22 (ENSFALG00000009794)	PPIB (ENSFALG00000023690)	CSNK1G1 (ENSFALG00000009808)	TRIP4 (ENSFALG00000009816)	ZNF609 (ENSFALG00000009819)	OAZ2 (ENSFALG00000009823)	SORD (ENSFALG00000009847)	ENSFALG00000009862	DUOXA2 (ENSFALG00000023603)	ENSFALG00000009896
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000173860	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Kakapo	MODERN SPECIES	1	NEO1 (ENSSHBG00005010436)	ADPGK (ENSSHBG00005010710)	ENSSHBG00005010776	ENSSHBG00005010905	ARIH1 (ENSSHBG00005010961)	HEXA (ENSSHBG00005010995)	CELF6 (ENSSHBG00005011051)	ENSSHBG00005011144	ENSSHBG00005011183	PKM (ENSSHBG00005011232)	GRAMD2A (ENSSHBG00005011272)	SENP8 (ENSSHBG00005011299)	MYO9A (ENSSHBG00005011588)	ENSSHBG00005012070 #20	AP3B2 (ENSSHBG00005012354) #21	CPEB1 (ENSSHBG00005014488) #22	RPS17 (ENSSHBG00005014506) #23	TERB2 (ENSSHBG00005014524)	ENSSHBG00005014539	PATL2 (ENSSHBG00005014553)	SNX1 (ENSSHBG00005014569)	SNX22 (ENSSHBG00005014583)	PPIB (ENSSHBG00005014602)	CSNK1G1 (ENSSHBG00005014631)	ENSSHBG00005014652	TRIP4 (ENSSHBG00005014664)	ZNF609 (ENSSHBG00005014676)	OAZ2 (ENSSHBG00005014689)	RBPMS2 (ENSSHBG00005014705)	SORD (ENSSHBG00005014719)	DUOX2 (ENSSHBG00005014766)
Golden eagle	MODERN SPECIES	21	HCN4 (ENSACCG00020002783)	NEO1 (ENSACCG00020002745)	ADPGK (ENSACCG00020002706)	BBS4 (ENSACCG00020002682)	ARIH1 (ENSACCG00020002613)	HEXA (ENSACCG00020002588)	CELF6 (ENSACCG00020002571)	PARP6 (ENSACCG00020002543)	PKM (ENSACCG00020002502)	GRAMD2A (ENSACCG00020002443)	SENP8 (ENSACCG00020002427)	MYO9A (ENSACCG00020002342)	NR2E3 (ENSACCG00020002244)	ENSACCG00020002235 #20	AP3B2 (ENSACCG00020002153) #21	CPEB1 (ENSACCG00020001856) #22	RPS17 (ENSACCG00020001732) #23	TERB2 (ENSACCG00020001713)	ENSACCG00020001704	ENSACCG00020001698	PATL2 (ENSACCG00020001684)	SNX1 (ENSACCG00020001668)	SNX22 (ENSACCG00020001658)	PPIB (ENSACCG00020001651)	CSNK1G1 (ENSACCG00020001617)	PCLAF (ENSACCG00020001589)	ENSACCG00020001580	ENSACCG00020001573	TRIP4 (ENSACCG00020001557)	ZNF609 (ENSACCG00020001543)	OAZ2 (ENSACCG00020001528)
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Anatidae	ANCESTRAL SPECIES	23	ENSGT00390000007235	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291	ENSGT00390000008240.k
Pink-footed goose	MODERN SPECIES	21	HCN4 (ENSABRG00000020496)	NEO1 (ENSABRG00000019993)	ADPGK (ENSABRG00000019906)	BBS4 (ENSABRG00000019860)	ARIH1 (ENSABRG00000019833)	HEXA (ENSABRG00000019809)	ENSABRG00000019806	CELF6 (ENSABRG00000019793)	PARP6 (ENSABRG00000019620)	PKM (ENSABRG00000019494)	GRAMD2A (ENSABRG00000019471)	SENP8 (ENSABRG00000019465)	MYO9A (ENSABRG00000017268)	NR2E3 (ENSABRG00000017064)	AP3B2 (ENSABRG00000017050) #21	CPEB1 (ENSABRG00000017044) #22	RPS17 (ENSABRG00000017016) #23	TERB2 (ENSABRG00000017012)	B2M (ENSABRG00000017005)	PATL2 (ENSABRG00000016996)	SNX1 (ENSABRG00000016986)	SNX22 (ENSABRG00000016949)	PPIB (ENSABRG00000016936)	CSNK1G1 (ENSABRG00000016932)
Duck	MODERN SPECIES	2	REC114 (ENSAPLG00000015657)	HCN4 (ENSAPLG00000011270)	NEO1 (ENSAPLG00000015725)	ADPGK (ENSAPLG00000015943)	BBS4 (ENSAPLG00000015992)	ARIH1 (ENSAPLG00000016156)	HEXA (ENSAPLG00000016289)	CELF6 (ENSAPLG00000016374)	PARP6 (ENSAPLG00000016442)	PKM (ENSAPLG00000001115)	GRAMD2A (ENSAPLG00000002217)	SENP8 (ENSAPLG00000002376)	MYO9A (ENSAPLG00000002464)	NR2E3 (ENSAPLG00000003149)	AP3B2 (ENSAPLG00000003156) #21	CPEB1 (ENSAPLG00000003525) #22	ENSAPLG00000003843 #23	TERB2 (ENSAPLG00000017869)	B2M (ENSAPLG00000002378)	SNX1 (ENSAPLG00000003989)	PPIB (ENSAPLG00000004432)	CSNK1G1 (ENSAPLG00000004446)	TRIP4 (ENSAPLG00000004612)	ZNF609 (ENSAPLG00000029091)	OAZ2 (ENSAPLG00000004764)	ENSAPLG00000018641	SORD (ENSAPLG00000004875)	DUOX2 (ENSAPLG00000005182)	ENSAPLG00000005516	ENSAPLG00000005531	ENSAPLG00000022821 #29
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000154743.B	ENSGT00940000156684	ENSGT00390000017953.A	ENSGT00940000158166	ENSGT00940000155744	ENSGT00390000008107.c.b	ENSGT00940000154201.a.b	ENSGT00950000183129.b.b	ENSGT00390000008859.b.d	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000006654 #20	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00390000006548.b #23	ENSGT00390000012336	ENSGT00690000102227	ENSGT00520000055649.b	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00960000189359	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000157725	ENSGT00940000158086	ENSGT00550000074781	ENSGT00940000160291
Chicken	MODERN SPECIES	1	HCN4 (ENSGALG00010021625)	NEO1 (ENSGALG00010021618)	ADPGK (ENSGALG00010021594)	BBS4 (ENSGALG00010021586)	ARIH1 (ENSGALG00010021577)	HEXA (ENSGALG00010021539)	CELF6 (ENSGALG00010021523)	PARP6 (ENSGALG00010021492)	PKLR (ENSGALG00010021110)	GRAMD2 (ENSGALG00010021093)	SENP8 (ENSGALG00010021082)	MYO9A (ENSGALG00010021062)	NR2E3 (ENSGALG00010021039)	ENSGALG00010021035 #20	AP3B2 (ENSGALG00010023384) #21	CPEB1 (ENSGALG00010023363) #22	RPS17 (ENSGALG00010023334) #23	TERB2 (ENSGALG00010023307)	B2M (ENSGALG00010023281)	PATL2 (ENSGALG00010023271)	SNX1 (ENSGALG00010023261)	SNX22 (ENSGALG00010023255)	PPIB (ENSGALG00010023244)	CSNK1G1 (ENSGALG00010023923)	ENSGALG00010023880	TRIP4 (ENSGALG00010023860)	ZNF609 (ENSGALG00010023792)	OAZ2 (ENSGALG00010023777)	RBPMS2 (ENSGALG00010023239)	SORD (ENSGALG00010022440)	DUOX2 (ENSGALG00010022419)
Turkey	MODERN SPECIES	3	REC114 (ENSMGAG00000002070)	HCN4 (ENSMGAG00000002045)	NEO1 (ENSMGAG00000001915)	ADPGK (ENSMGAG00000001897)	BBS4 (ENSMGAG00000001876)	ARIH1 (ENSMGAG00000001832)	ENSMGAG00000016448	CELF6 (ENSMGAG00000001804)	ENSMGAG00000001695	PKM (ENSMGAG00000001626)	GRAMD2A (ENSMGAG00000001611)	SENP8 (ENSMGAG00000001601)	MYO9A (ENSMGAG00000001473)	ENSMGAG00000001442 #20	AP3B2 (ENSMGAG00000017162) #21	ENSMGAG00000001387 #22	RPS17 (ENSMGAG00000001359) #23	TERB2 (ENSMGAG00000001350)	ENSMGAG00000001345	PATL2 (ENSMGAG00000001309)	SNX1 (ENSMGAG00000001289)	SNX22 (ENSMGAG00000019436)	PPIB (ENSMGAG00000001283)	CSNK1G1 (ENSMGAG00000001191)	ENSMGAG00000019984	TRIP4 (ENSMGAG00000001166)	ZNF609 (ENSMGAG00000001151)	OAZ2 (ENSMGAG00000001138)	ENSMGAG00000001128	ENSMGAG00000001088	ENSMGAG00000000994
Japanese quail	MODERN SPECIES	1	HCN4 (ENSCJPG00005007514)	NEO1 (ENSCJPG00005007494)	ADPGK (ENSCJPG00005007481)	BBS4 (ENSCJPG00005007480)	ARIH1 (ENSCJPG00005007479)	HEXA (ENSCJPG00005007478)	CELF6 (ENSCJPG00005007477)	PARP6 (ENSCJPG00005007424)	PKM (ENSCJPG00005007315)	GRAMD2A (ENSCJPG00005007314)	SENP8 (ENSCJPG00005007313)	ENSCJPG00005007312	MYO9A (ENSCJPG00005003674)	ENSCJPG00005003644 #20	AP3B2 (ENSCJPG00005001680) #21	CPEB1 (ENSCJPG00005001127) #22	RPS17 (ENSCJPG00005001091) #23	TERB2 (ENSCJPG00005001084)	B2M (ENSCJPG00005001076)	PATL2 (ENSCJPG00005001062)	SNX1 (ENSCJPG00005001045)	SNX22 (ENSCJPG00005001034)	PPIB (ENSCJPG00005001015)	CSNK1G1 (ENSCJPG00005000983)	TRIP4 (ENSCJPG00005000964)	ZNF609 (ENSCJPG00005000920)	OAZ2 (ENSCJPG00005000890)	RBPMS2 (ENSCJPG00005000876)	SORD (ENSCJPG00005000864)	DUOX2 (ENSCJPG00005000755)	ENSCJPG00005000732
African ostrich	MODERN SPECIES	326							ENSSCUG00000004815	ENSSCUG00000004817	PKM (ENSSCUG00000004819)	GRAMD2A (ENSSCUG00000004822)	SENP8 (ENSSCUG00000004824)	MYO9A (ENSSCUG00000004859)	ENSSCUG00000004949	ENSSCUG00000004952	AP3B2 (ENSSCUG00000004985) #21	CPEB1 (ENSSCUG00000005018) #22	RPS17 (ENSSCUG00000005020) #23	TERB2 (ENSSCUG00000005025)	B2M (ENSSCUG00000005027)	PATL2 (ENSSCUG00000005031)	SNX1 (ENSSCUG00000005039)	SNX22 (ENSSCUG00000005049)	PPIB (ENSSCUG00000005051)	CSNK1G1 (ENSSCUG00000005053)	TRIP4 (ENSSCUG00000005057)	ZNF609 (ENSSCUG00000005059)	OAZ2 (ENSSCUG00000005060)	RBPMS2 (ENSSCUG00000005061)	SORD (ENSSCUG00000005065)	DUOX2 (ENSSCUG00000005123)	ENSSCUG00000005163
Australian saltwater crocodile	MODERN SPECIES	31	ARIH1 (ENSCPRG00005005882)	HEXA (ENSCPRG00005005818)	CELF6 (ENSCPRG00005005791)	PARP6 (ENSCPRG00005005752)	PKM (ENSCPRG00005005739)	GRAMD2A (ENSCPRG00005005731)	SENP8 (ENSCPRG00005005726)	MYO9A (ENSCPRG00005005657)	ENSCPRG00005005635	ENSCPRG00005005631	ENSCPRG00005005625	ENSCPRG00005005618	ENSCPRG00005005614	NR2E3 (ENSCPRG00005005610)	AP3B2 (ENSCPRG00005005515) #21	CPEB1 (ENSCPRG00005005487) #22	TERB2 (ENSCPRG00005005464)	TRIM69 (ENSCPRG00005005457)	B2M (ENSCPRG00005005442)	PATL2 (ENSCPRG00005005418)	SNX1 (ENSCPRG00005005397)	SNX22 (ENSCPRG00005005380)	PPIB (ENSCPRG00005005372)	ENSCPRG00005005369	CSNK1G1 (ENSCPRG00005005359)	PCLAF (ENSCPRG00005005348)	TRIP4 (ENSCPRG00005005311)	ZNF609 (ENSCPRG00005005286)	OAZ2 (ENSCPRG00005005267)	RBPMS2 (ENSCPRG00005005245)	ENSCPRG00005005242
Anura	ANCESTRAL SPECIES	5	ENSGT00940000166971.a.a.a	ENSGT00390000011314	ENSGT00940000157947	ENSGT01030000234638.a	ENSGT00940000153230.C	ENSGT00390000015516	ENSGT00530000069184	ENSGT00390000002672	ENSGT00940000165891	ENSGT00440000038107	ENSGT00940000157577	ENSGT00390000012336	ENSGT00940000158086	ENSGT00940000157725	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00940000164099.a.b	ENSGT00390000006548.b #23	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000155628	ENSGT00510000048252	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000156052	ENSGT00930000151452	ENSGT00940000160359	ENSGT00390000016435	ENSGT00950000183037.A.a	ENSGT00940000157431
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000027355	ENSLLEG00000027404	ENSLLEG00000027419	PPCDC (ENSLLEG00000027441)	SCAMP5 (ENSLLEG00000027475)	ENSLLEG00000013436	ENSLLEG00000013458	TERB2 (ENSLLEG00000013488)	ENSLLEG00000013558	ENSLLEG00000013579	ENSLLEG00000013602	RBPMS2 (ENSLLEG00000013644)	OAZ2 (ENSLLEG00000013892)	ENSLLEG00000013938	AP3B2 (ENSLLEG00000013971) #21	CPEB1 (ENSLLEG00000014479) #22	ENSLLEG00000014807	RPS17 (ENSLLEG00000014831) #23	SNX1 (ENSLLEG00000015027)	PPIB (ENSLLEG00000015266)	CSNK1G1 (ENSLLEG00000015498)	TRIP4 (ENSLLEG00000016185)	PCLAF (ENSLLEG00000016532)	ZNF609 (ENSLLEG00000016587)	ARID3B (ENSLLEG00000016712)	ENSLLEG00000017186	CSK (ENSLLEG00000017228)	ENSLLEG00000017600	ENSLLEG00000017661	CPLX3 (ENSLLEG00000017811)	ULK3 (ENSLLEG00000017863)
Frog	MODERN SPECIES	3	ctsl (ENSXETG00000036889)	hykk (ENSXETG00000023889)	slc27a3 (ENSXETG00000023888)	man2c1 (ENSXETG00000023887)	neil1 (ENSXETG00000023886)	commd4 (ENSXETG00000023885)	ENSXETG00000036214	ENSXETG00000038733	c15orf39 (ENSXETG00000035954)	ppcdc (ENSXETG00000010670)	scamp5.2 (ENSXETG00000010669)	rbpms2 (ENSXETG00000037318)	oaz2 (ENSXETG00000010666)	ENSXETG00000041700	ap3b2 (ENSXETG00000010662) #21	cpeb1 (ENSXETG00000010660) #22	terb2 (ENSXETG00000036296)	ENSXETG00000041936	rps17 (ENSXETG00000010656) #23	snx1 (ENSXETG00000010653)	snx22 (ENSXETG00000010652)	ppib (ENSXETG00000043380)	csnk1g1 (ENSXETG00000010650)	pclaf (ENSXETG00000027460)	trip4 (ENSXETG00000010649)	znf609 (ENSXETG00000010648)	ENSXETG00000045917	arid3b (ENSXETG00000010647)	ENSXETG00000040363	clk3 (ENSXETG00000010623)	edc3 (ENSXETG00000010622)
Coelacanth	MODERN SPECIES	417														RBPMS2 (ENSLACG00000016999)	AP3B2 (ENSLACG00000016681) #21	CPEB1 (ENSLACG00000016523) #22	ENSLACG00000016393	ENSLACG00000016328	RPS17 (ENSLACG00000016288) ##23	SNX1 (ENSLACG00000015898)	ENSLACG00000015673	PCLAF (ENSLACG00000015625)	CSNK1G1 (ENSLACG00000015103)	ENSLACG00000015009	TRIP4 (ENSLACG00000014856)	CLK3 (ENSLACG00000014706)	EDC3 (ENSLACG00000014149)	cyp1a (ENSLACG00000014013)	ENSLACG00000012489	CSK (ENSLACG00000007735)	ENSLACG00000022595
Actinopterygii	ANCESTRAL SPECIES	201													ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.a.a ##23	ENSGT00940000164099.a.b	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000008107.c.b
Neopterygii	ANCESTRAL SPECIES	118	ENSGT00940000158464	ENSGT00940000154996.a.b	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422	ENSGT00940000153533.a	ENSGT00940000155399	ENSGT00940000157796	ENSGT00550000074827	ENSGT00940000157725	ENSGT00940000158086	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000155889	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.b ##23	ENSGT00940000164099.a.b	ENSGT00390000005300	ENSGT00390000008748.b	ENSGT00940000159572	ENSGT00390000014038	ENSGT00940000154905	ENSGT00940000156926	ENSGT00390000008107.c.b
Osteoglossocephalai	ANCESTRAL SPECIES	59	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399	ENSGT00940000157796	ENSGT00550000074827	ENSGT00940000157725	ENSGT00940000158086.b	ENSGT00940000158086.a.b	ENSGT00940000156817 #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.b ##23
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	166	ENSGT00940000158464	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.a ##23	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000154617.B.c	ENSGT00390000005300	ENSGT00390000008748.b.g.b	ENSGT00940000159572.a.a	ENSGT00390000014038	ENSGT00940000154905.i.a
Otomorpha	ANCESTRAL SPECIES	210	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.a.b	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.a ##23
Otophysi	ANCESTRAL SPECIES	169	ENSGT00940000158464	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00950000182976.a.b.c	ENSGT00940000157255.c.a	ENSGT00940000177234	ENSGT00940000158319	ENSGT00940000157810	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00940000160061
Characiphysae	ANCESTRAL SPECIES	63	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.a.b	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00390000010089	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00940000165330	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00950000182976.a.b.c	ENSGT00940000157255.c.a	ENSGT00940000177234	ENSGT00940000158319	ENSGT00940000157810	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00940000160061	ENSGT00940000159961
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00390000010089	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00940000165330	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00950000182976.a.b.c	ENSGT00940000157255.c.a	ENSGT00940000177234	ENSGT00940000158319	ENSGT00940000157810	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00940000160061
Characoidei	ANCESTRAL SPECIES	65	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00390000010089	ENSGT00390000018587.f	ENSGT00440000033504.A	ENSGT00980000200651	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00950000182976.a.b.c	ENSGT00940000157255.c.a	ENSGT00940000177234	ENSGT00940000158319	ENSGT00940000157810	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00940000160061	ENSGT00940000162662.y	ENSGT00530000063626.a
Mexicana tetra	MODERN SPECIES	22	fbxo7 (ENSAMXG00000037809)	chrm2a (ENSAMXG00000044072)	ENSAMXG00000030087	ENSAMXG00000040473	ptn (ENSAMXG00000042865)	ENSAMXG00000034405	psma4 (ENSAMXG00000013834)	ENSAMXG00000032433	rbpms2a (ENSAMXG00000036507)	AP3B2 (ENSAMXG00000014020) #21	tmem258 (ENSAMXG00000014062)	tmem138 (ENSAMXG00000037687)	cracr2b (ENSAMXG00000014132)	ENSAMXG00000014161	ENSAMXG00000038018	cpeb1a (ENSAMXG00000014189) #22	ENSAMXG00000014258	snx1a (ENSAMXG00000042524)	celf2 (ENSAMXG00000005933)	usp6nl (ENSAMXG00000005953)	ENSAMXG00000032127	cpm (ENSAMXG00000005960)	ENSAMXG00000043734	TRHDE (ENSAMXG00000029695)	mdm2 (ENSAMXG00000034801)	slc35e3 (ENSAMXG00000042388)	nup107 (ENSAMXG00000018121)	ENSAMXG00000041990	magi2a (ENSAMXG00000018069)	ENSAMXG00000018022	IREB2 (ENSAMXG00000008756)
Red-bellied piranha	MODERN SPECIES	122	PTPN9 (ENSPNAG00000026960)	sin3aa (ENSPNAG00000027047)	crabp1a (ENSPNAG00000004167)	skic8 (ENSPNAG00000004180)	slc25a44a (ENSPNAG00000027154)	IREB2 (ENSPNAG00000027252)	psma4 (ENSPNAG00000027295)	OAZ2 (ENSPNAG00000027304)	rbpms2a (ENSPNAG00000027343)	AP3B2 (ENSPNAG00000027450) #21	tmem258 (ENSPNAG00000027466)	tmem138 (ENSPNAG00000005963)	cracr2b (ENSPNAG00000027533)	ENSPNAG00000027545	ENSPNAG00000027573	cpeb1a (ENSPNAG00000004246) #22	ENSPNAG00000027678	snx1a (ENSPNAG00000027822)	snx22 (ENSPNAG00000027856)	ppib (ENSPNAG00000027841)	DEPDC7 (ENSPNAG00000005167)	NUAK1 (ENSPNAG00000027935)	ENSPNAG00000027989	appl2 (ENSPNAG00000004305)	TUBGCP6 (ENSPNAG00000028835)	plxnb2b (ENSPNAG00000005433)	nansb (ENSPNAG00000028960)	SHISAL1 (ENSPNAG00000028986)	parvg (ENSPNAG00000004483)	parvb (ENSPNAG00000005696)	hdac10 (ENSPNAG00000004519)
Electric eel	MODERN SPECIES	4	tshr (ENSEEEG00000018682)	PTPN9 (ENSEEEG00000018675)	ENSEEEG00000018674	sin3aa (ENSEEEG00000018517)	crabp1a (ENSEEEG00000018474)	skic8 (ENSEEEG00000018343)	slc25a44a (ENSEEEG00000018340)	IREB2 (ENSEEEG00000017974)	psma4 (ENSEEEG00000017962)	OAZ2 (ENSEEEG00000017961)	RBPMS2 (ENSEEEG00000017955)	AP3B2 (ENSEEEG00000017952) #21	tmem258 (ENSEEEG00000017951)	tmem138 (ENSEEEG00000017946)	cracr2b (ENSEEEG00000017943)	cpeb1a (ENSEEEG00000017941) #22	ENSEEEG00000017938	snx1a (ENSEEEG00000017926)	snx22 (ENSEEEG00000017924)	ppib (ENSEEEG00000017919)	DEPDC7 (ENSEEEG00000017918)	NUAK1 (ENSEEEG00000017913)	ENSEEEG00000017911	appl2 (ENSEEEG00000017909)	TUBGCP6 (ENSEEEG00000017770)	plxnb2b (ENSEEEG00000017758)	CMAS (ENSEEEG00000017750)
Channel catfish	MODERN SPECIES	5	lingo1 (ENSIPUG00000014376)	ENSIPUG00000014369	hmg20a (ENSIPUG00000014329)	peak1 (ENSIPUG00000014281)	ENSIPUG00000014246	prc1a (ENSIPUG00000014182)	syt12 (ENSIPUG00000014144)	psma4 (ENSIPUG00000014113)	OAZ2 (ENSIPUG00000014100)	RBPMS (ENSIPUG00000014032)	ENSIPUG00000014022	AP3B2 (ENSIPUG00000013722) #21	tmem258 (ENSIPUG00000013660)	tmem138 (ENSIPUG00000013636)	cracr2b (ENSIPUG00000013598)	cpeb1a (ENSIPUG00000013576) #22	snx1a (ENSIPUG00000013546)	snx22 (ENSIPUG00000013513)	ppib (ENSIPUG00000013480)	ENSIPUG00000013454	ENSIPUG00000013439	ENSIPUG00000013248	hdac10 (ENSIPUG00000013207)	parvb (ENSIPUG00000013176)	parvg (ENSIPUG00000013120)	SHISAL1 (ENSIPUG00000013104)	plxnb2b (ENSIPUG00000013000)	dnaaf1 (ENSIPUG00000012982)	tubgcp6 (ENSIPUG00000012929)	appl2 (ENSIPUG00000012828)	NUAK1 (ENSIPUG00000012794)
Cyprinoidei	ANCESTRAL SPECIES	42	ENSGT00940000158464	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00950000182976.a.b.c	ENSGT00940000157255.c.a	ENSGT00610000087444	ENSGT00940000158319	ENSGT00940000157810	ENSGT01020000230394.e.a.a.a.a.a	ENSGT00390000006791	ENSGT01100000263533.b.b.b.a.b.a.b	ENSGT00940000160061	ENSGT00950000183194.b	ENSGT00950000183194.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1058															ENSGT00940000156817.f #21	ENSGT00940000155524.e.a.a.a #22	ENSGT00950000182940.a.a	ENSGT00940000155889.d.a.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2919													OAZ2 (ENSCARG00000065931)	rbpms2a (ENSCARG00000065916)	AP3B2 (ENSCARG00000065433) #21	cpeb1a (ENSCARG00000065374) #22	ENSCARG00000065366	snx1a (ENSCARG00000064908)
Goldfish	MODERN SPECIES	45	gnb5a (ENSCARG00000044185)	ENSCARG00000044214	CSPG4 (ENSCARG00000044569)	snx33 (ENSCARG00000044599)	snupn (ENSCARG00000044612)	PTPN9 (ENSCARG00000044680)	sin3aa (ENSCARG00000045176)	crabp1a (ENSCARG00000045480)	skic8 (ENSCARG00000045496)	ENSCARG00000045520	IREB2 (ENSCARG00000045789)	psma4 (ENSCARG00000052955)	OAZ2 (ENSCARG00000053008)	RBPMS2 (ENSCARG00000053027)	AP3B2 (ENSCARG00000053133) #21	cpeb1a (ENSCARG00000054368) #22	ENSCARG00000054428	snx1a (ENSCARG00000054465)	snx22 (ENSCARG00000055061)	ppib (ENSCARG00000055083)	NUAK1 (ENSCARG00000055150)	TUBGCP6 (ENSCARG00000055205)	plxnb2b (ENSCARG00000055663)	crabp1a (ENSCARG00000056258)	skic8 (ENSCARG00000056283)	IREB2 (ENSCARG00000056503)	psma4 (ENSCARG00000062448)	LINGO1 (ENSCARG00000062515)	hmg20a (ENSCARG00000062520)	PEAK1 (ENSCARG00000062537)	ENSCARG00000062544
Cyprininae_a	ANCESTRAL SPECIES	419	ENSGT00940000154996.a.b.a.a	ENSGT00940000154091.a.b.c	ENSGT00940000160162.i	ENSGT00510000047494.e	ENSGT00940000157447.g	ENSGT00940000155491.c.h	ENSGT00940000159422.a.a.a.c	ENSGT00940000153533.a.s.b	ENSGT00940000159422.a.a.a.d	ENSGT00940000153533.a.t	ENSGT00940000155399.b.d	ENSGT00940000157796.d	ENSGT00550000074827.fb.a	ENSGT00940000157725.p.a	ENSGT00940000156817.f #21	ENSGT00940000155524.e.a.a.a #22	ENSGT00950000182940.a.a	ENSGT00940000155889.d.a.a.b	ENSGT00940000155889.d.a.b	ENSGT00390000001280.a.c	ENSGT00940000158007.d
Common carp reference	MODERN SPECIES	33	hmg20a (ENSCCRG00000045197)	ENSCCRG00000077381	CSPG4 (ENSCCRG00000023031)	snx33 (ENSCCRG00000057062)	snupn (ENSCCRG00000055944)	PTPN9 (ENSCCRG00000006514)	sin3aa (ENSCCRG00000065394)	crabp1a (ENSCCRG00000064457)	skic8 (ENSCCRG00000007119)	slc25a44a (ENSCCRG00000007157)	ENSCCRG00000043456	psma4 (ENSCCRG00000029445)	ENSCCRG00000061894	ENSCCRG00000029525	ENSCCRG00000029467 #21	cpeb1a (ENSCCRG00000029457) #22	ENSCCRG00000076019	snx1a (ENSCCRG00000019560)	snx22 (ENSCCRG00000043408)	ppib (ENSCCRG00000070153)	ENSCCRG00000009185	ENSCCRG00000009501	appl2 (ENSCCRG00000080422)	ENSCCRG00000059301	plxnb2b (ENSCCRG00000050140)	ENSCCRG00000082611	nansb (ENSCCRG00000068942)	ENSCCRG00000063557	ENSCCRG00000007216	nansb (ENSCCRG00000054075)	ENSCCRG00000006179
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155524.e.a.a.b.a #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3081														ENSCARG00000046514	ENSCARG00000046508	cpeb1a (ENSCARG00000046487) #22
Goldfish	MODERN SPECIES	2123									ENSCARG00000056313	sh2b1 (ENSCARG00000056321)	ENSCARG00000056335	ENSCARG00000056345	ENSCARG00000056354	rtel1 (ENSCARG00000056364)	ENSCARG00000056441	cpeb1a (ENSCARG00000056466) #22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155524.e.a.a.b.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155524.e.a.a.b.b #22
Common carp reference	MODERN SPECIES	9	ENSCCRG00000072079	ENSCCRG00000065148	ENSCCRG00000048271	ENSCCRG00000069962	ENSCCRG00000028796	ENSCCRG00000058205	ENSCCRG00000036901	ENSCCRG00000059218	ENSCCRG00000024977	ENSCCRG00000047014	ENSCCRG00000005860	ENSCCRG00000078381	ENSCCRG00000033823	ENSCCRG00000039102	ENSCCRG00000080307	ENSCCRG00000044104 #22	ENSCCRG00000056323	ENSCCRG00000064415	ENSCCRG00000079185	tcf25 (ENSCCRG00000081336)	ENSCCRG00000004375	mvda (ENSCCRG00000077134)	ENSCCRG00000016876	ENSCCRG00000078308	ENSCCRG00000055489	ENSCCRG00000020042	DHX36 (ENSCCRG00000014768)	GPR149 (ENSCCRG00000050766)	ENSCCRG00000074222	MME (ENSCCRG00000008899)	ENSCCRG00000025200
Goldfish	MODERN SPECIES	20	ENSCARG00000018924	ENSCARG00000018929	CYTH3 (ENSCARG00000018947)	CACNG5 (ENSCARG00000019001)	ENSCARG00000019028	cep112 (ENSCARG00000019213)	axin2 (ENSCARG00000019339)	tex2 (ENSCARG00000019372)	ENSCARG00000019820	mafga (ENSCARG00000022776)	ENSCARG00000022783	PCYT2 (ENSCARG00000022833)	ENSCARG00000023980	ENSCARG00000024013	rnf213a (ENSCARG00000024062)	cpeb1a (ENSCARG00000024260) #22	ENSCARG00000024289	ENSCARG00000024307	ENSCARG00000024325	ENSCARG00000024337	ENSCARG00000024341	ENSCARG00000024348	ENSCARG00000024360	ENSCARG00000024366	ENSCARG00000024381	ENSCARG00000024392	ENSCARG00000024400	rpl28 (ENSCARG00000024408)	ENSCARG00000024414	ENSCARG00000024438	pdcl (ENSCARG00000024620)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155524.e.a.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155524.e.a.b #22
Golden-line barbel	MODERN SPECIES	814			LINGO1 (ENSSGRG00000044458)	CSPG4 (ENSSGRG00000044457)	snx33 (ENSSGRG00000044456)	snupn (ENSSGRG00000044455)	PTPN9 (ENSSGRG00000044273)	sin3aa (ENSSGRG00000044197)	crabp1a (ENSSGRG00000044188)	skic8 (ENSSGRG00000044187)	slc25a44a (ENSSGRG00000044185)	IREB2 (ENSSGRG00000042974)	psma4 (ENSSGRG00000042936)	OAZ2 (ENSSGRG00000042934)	AP3B2 (ENSSGRG00000042929) #21	cpeb1a (ENSSGRG00000042927) #22	ENSSGRG00000042925	snx1a (ENSSGRG00000042921)	snx22 (ENSSGRG00000042920)	DEPDC7 (ENSSGRG00000042919)	NUAK1 (ENSSGRG00000042909)
Cyprininae	ANCESTRAL SPECIES	57	ENSGT00940000158464.a	ENSGT00940000154996.a.b.a.b	ENSGT00940000154091.a.b.d	ENSGT00940000160162.j	ENSGT00510000047494.f	ENSGT00940000157447.h	ENSGT00940000155491.c.g	ENSGT00940000159422.a.a.b	ENSGT00940000153533.a.s.a	ENSGT00940000155399.b.c	ENSGT00940000157796.c	ENSGT00550000074827.fb.b	ENSGT00940000157725.p.b	ENSGT00940000158086.a.b	ENSGT00940000156817.e #21	ENSGT00940000155524.e.b #22	ENSGT00950000182940.a.b	ENSGT00940000155889.d.b	ENSGT00390000001280.a.d	ENSGT00940000158007.c	ENSGT00950000182976.a.b.c.c	ENSGT00940000157255.c.a.b	ENSGT00940000158319.f	ENSGT01020000230394.e.a.a.a.a.a.a	ENSGT00390000006791.ab.a.a	ENSGT00950000183194.b.e	ENSGT00950000183194.a.a.c	ENSGT00940000162662.y.e.b	ENSGT00840000129915.a	ENSGT00950000182838.C.i	ENSGT01000000214413.a.w.b
Goldfish	MODERN SPECIES	17	ppib (ENSCARG00000008759)	DEPDC7 (ENSCARG00000008767)	CSPG4 (ENSCARG00000008778)	snx33 (ENSCARG00000008799)	snupn (ENSCARG00000008812)	PTPN9 (ENSCARG00000008897)	sin3aa (ENSCARG00000009523)	crabp1a (ENSCARG00000009665)	skic8 (ENSCARG00000009671)	slc25a44a (ENSCARG00000009688)	IREB2 (ENSCARG00000009781)	psma4 (ENSCARG00000012811)	OAZ2 (ENSCARG00000012824)	ENSCARG00000012837	AP3B2 (ENSCARG00000012954) #21	cpeb1a (ENSCARG00000013683) #22	snx1a (ENSCARG00000013725)	snx22 (ENSCARG00000013779)	ppib (ENSCARG00000013787)	DEPDC7 (ENSCARG00000013792)	NUAK1 (ENSCARG00000013795)	appl2 (ENSCARG00000013817)	plxnb2b (ENSCARG00000014361)	gtf2h1 (ENSCARG00000015524)	ENSCARG00000015554	cib1 (ENSCARG00000015567)	metap2b (ENSCARG00000015575)	pthlhb (ENSCARG00000015595)	tmpob (ENSCARG00000015599)	slc25a3b (ENSCARG00000015607)	ENSCARG00000015638
Cyprininae_a	ANCESTRAL SPECIES	106	ENSGT00940000158464.a	ENSGT00940000154996.a.b.a.b	ENSGT00940000154091.a.b.d	ENSGT00940000160162.j	ENSGT00510000047494.f	ENSGT00940000157447.h	ENSGT00940000155491.c.g	ENSGT00940000159422.a.a.b	ENSGT00940000153533.a.s.a	ENSGT00940000155399.b.c	ENSGT00940000157796.c	ENSGT00550000074827.fb.b	ENSGT00940000157725.p.b	ENSGT00940000158086.a.b	ENSGT00940000156817.e #21	ENSGT00940000155524.e.b #22	ENSGT00950000182940.a.b	ENSGT00940000155889.d.b	ENSGT00390000001280.a.d	ENSGT00940000158007.c	ENSGT00950000182976.a.b.c.c	ENSGT00940000157255.c.a.b	ENSGT00940000158319.f	ENSGT01020000230394.e.a.a.a.a.a.a
Common carp reference	MODERN SPECIES	37	ENSCCRG00000070509	CSPG4 (ENSCCRG00000006425)	snx33 (ENSCCRG00000023028)	snupn (ENSCCRG00000006442)	PTPN9 (ENSCCRG00000037407)	sin3aa (ENSCCRG00000053554)	crabp1a (ENSCCRG00000037011)	skic8 (ENSCCRG00000037008)	slc25a44a (ENSCCRG00000052089)	ENSCCRG00000078484	ENSCCRG00000007163	psma4 (ENSCCRG00000043423)	ENSCCRG00000077568	ENSCCRG00000037495	ENSCCRG00000010515 #21	cpeb1a (ENSCCRG00000056644) #22	ENSCCRG00000081501	snx1a (ENSCCRG00000002151)	ppib (ENSCCRG00000076510)	snx22 (ENSCCRG00000059504)	ENSCCRG00000019925	ENSCCRG00000019956	appl2 (ENSCCRG00000068982)	ENSCCRG00000076155	SHISAL1 (ENSCCRG00000057460)	parvg (ENSCCRG00000034474)	parvb (ENSCCRG00000006046)	ENSCCRG00000060384	ENSCCRG00000056638	ENSCCRG00000033811	ENSCCRG00000054874
Golden-line barbel	MODERN SPECIES	705	LINGO1 (ENSSGRG00000033592)	CSPG4 (ENSSGRG00000033596)	snx33 (ENSSGRG00000033597)	snupn (ENSSGRG00000033601)	PTPN9 (ENSSGRG00000033731)	sin3aa (ENSSGRG00000034507)	crabp1a (ENSSGRG00000034716)	SKIC8 (ENSSGRG00000034724)	slc25a44a (ENSSGRG00000034849)	IREB2 (ENSSGRG00000034888)	psma4 (ENSSGRG00000035901)	OAZ2 (ENSSGRG00000035903)	RBPMS2 (ENSSGRG00000035912)	AP3B2 (ENSSGRG00000036023) #21	ENSSGRG00000038159	cpeb1a (ENSSGRG00000038160) #22	ENSSGRG00000038204	snx1a (ENSSGRG00000038233)	snx22 (ENSSGRG00000040219)	ppib (ENSSGRG00000040226)	NUAK1 (ENSSGRG00000040254)	DEPDC7 (ENSSGRG00000040256)
Zebrafish	MODERN SPECIES	17	PEAK1 (ENSDARG00000079756)	hmg20a (ENSDARG00000031198)	LINGO1 (ENSDARG00000034165)	CSPG4 (ENSDARG00000078227)	snx33 (ENSDARG00000014954)	snupn (ENSDARG00000008395)	PTPN9 (ENSDARG00000077495)	sin3aa (ENSDARG00000079716)	crabp1a (ENSDARG00000045926)	skic8 (ENSDARG00000007755)	slc25a44a (ENSDARG00000045927)	IREB2 (ENSDARG00000021466)	psma4 (ENSDARG00000045928)	oaz2a (ENSDARG00000045929)	rbpms2a (ENSDARG00000045930)	cpeb1a (ENSDARG00000045932) #22	ENSDARG00000091833	snx1a (ENSDARG00000071031)	snx22 (ENSDARG00000053204)	ppib (ENSDARG00000092798)	DEPDC7 (ENSDARG00000053246)	NUAK1 (ENSDARG00000028676)	ENSDARG00000100152	appl2 (ENSDARG00000078139)	ENSDARG00000100151	AP3B2 (ENSDARG00000105296) #21	plxnb2b (ENSDARG00000036985)	ENSDARG00000076361	nansb (ENSDARG00000101164)	ENSDARG00000089903	SHISAL1 (ENSDARG00000067710)
Clupeiformes	ANCESTRAL SPECIES	304					ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.p	ENSGT00940000158086.a.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00510000048252	ENSGT00940000155628	ENSGT00390000006548.a.b.a.a ##23
Denticle herring	MODERN SPECIES	8	tes (ENSDCDG00000034286)	cav2 (ENSDCDG00000034289)	cav1 (ENSDCDG00000034294)	met (ENSDCDG00000034314)	snupn (ENSDCDG00000034466)	PTPN9 (ENSDCDG00000034468)	sin3aa (ENSDCDG00000034515)	crabp1a (ENSDCDG00000034665)	skic8 (ENSDCDG00000034674)	slc25a44a (ENSDCDG00000034705)	IREB2 (ENSDCDG00000034745)	psma4 (ENSDCDG00000035114)	OAZ2 (ENSDCDG00000005669)	RBPMS2 (ENSDCDG00000005681)	AP3B2 (ENSDCDG00000005988) #21	cpeb1a (ENSDCDG00000007047) #22	ENSDCDG00000007141	snx1a (ENSDCDG00000007338)	snx22 (ENSDCDG00000008612)	ppib (ENSDCDG00000008617)	PCLAF (ENSDCDG00000008623)	csnk1g1 (ENSDCDG00000008675)	zgc:114188 (ENSDCDG00000008768) ##23	bbs4 (ENSDCDG00000008785)	adpgk (ENSDCDG00000008867)	NEO1 (ENSDCDG00000009430)	scamp2 (ENSDCDG00000019774)	mpi (ENSDCDG00000019777)	ENSDCDG00000019781	myo9ab (ENSDCDG00000019804)	ENSDCDG00000020193
Euteleosteomorpha	ANCESTRAL SPECIES	179	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725	ENSGT00940000158086.a.a	ENSGT00940000158086.a.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007
Protacanthopterygii	ANCESTRAL SPECIES	79	ENSGT00940000158464	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00940000160394.b	ENSGT00940000162591	ENSGT00940000155465.j	ENSGT00940000164138
Salmoninae	ANCESTRAL SPECIES	59		ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162.g	ENSGT00510000047494	ENSGT00940000157447.c	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.r	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837.f.a	ENSGT00940000156124.c.b.c	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000160394.b	ENSGT00390000016223.h.b.b	ENSGT00940000162591
Salmoninae_a	ANCESTRAL SPECIES	13		ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162.g	ENSGT00510000047494	ENSGT00940000157447.c	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.r	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837.f.a	ENSGT00940000156124.c.b.c	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000160394.b	ENSGT00390000016223.h.b.b	ENSGT00940000162591
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00390000008732.b.a.a	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162.g	ENSGT00510000047494	ENSGT00940000157447.c	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.r	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837.f.a	ENSGT00940000156124.c.b.c	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000160394.b	ENSGT00390000016223.h.b.b	ENSGT00940000162591
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00390000008732.b.a.a	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162.g	ENSGT00510000047494	ENSGT00940000157447.c	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.r	ENSGT00940000158086.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837.f.a	ENSGT00940000156124.c.b.c	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00940000160394.b	ENSGT00390000016223.h.b.b	ENSGT00940000162591
Coho salmon	MODERN SPECIES	14	LINGO1 (ENSOKIG00005048695)	ENSOKIG00005048689	CSPG4 (ENSOKIG00005048660)	snx33 (ENSOKIG00005048652)	snupn (ENSOKIG00005048646)	PTPN9 (ENSOKIG00005048589)	sin3aa (ENSOKIG00005048463)	CRABP1 (ENSOKIG00005048407)	skic8 (ENSOKIG00005048375)	slc25a44a (ENSOKIG00005048366)	IREB2 (ENSOKIG00005047745)	psma4 (ENSOKIG00005047669)	OAZ2 (ENSOKIG00005047656)	rbpms2a (ENSOKIG00005047622)	AP3B2 (ENSOKIG00005044481) #21	cpeb1a (ENSOKIG00005044131) #22	ENSOKIG00005044117	snx1a (ENSOKIG00005043205)	snx22 (ENSOKIG00005043122)	bbs4 (ENSOKIG00005042868)	adpgk (ENSOKIG00005042802)	ENSOKIG00005042782	ENSOKIG00005042750	ENSOKIG00005042702	PHF21A (ENSOKIG00005042571)	DGKZ (ENSOKIG00005041587)	mdkb (ENSOKIG00005041399)	ENSOKIG00005041390	ambra1b (ENSOKIG00005041335)	NOX5 (ENSOKIG00005041064)	CORO2B (ENSOKIG00005040903)
Rainbow trout	MODERN SPECIES	11	snx33 (ENSOMYG00000019121)	snupn (ENSOMYG00000019163)	ENSOMYG00000063098	PTPN9 (ENSOMYG00000019321)	sin3aa (ENSOMYG00000019728)	ENSOMYG00000064270	ENSOMYG00000019861	skic8 (ENSOMYG00000019891)	ENSOMYG00000052111	slc25a44a (ENSOMYG00000019976)	ENSOMYG00000020202	psma4 (ENSOMYG00000024164)	ENSOMYG00000024192	ENSOMYG00000024258	ENSOMYG00000025365 #21	cpeb1a (ENSOMYG00000029664) #22	ENSOMYG00000030680	snx1a (ENSOMYG00000030785)	snx22 (ENSOMYG00000031081)	ppib (ENSOMYG00000031100)	ENSOMYG00000031251	ENSOMYG00000031838	ENSOMYG00000031851	cd59 (ENSOMYG00000031856)	ENSOMYG00000031863	PHF21A (ENSOMYG00000031899)	DGKZ (ENSOMYG00000032135)	mdkb (ENSOMYG00000032441)	ENSOMYG00000032452	ambra1b (ENSOMYG00000032459)	NOX5 (ENSOMYG00000032499)
Salmo	ANCESTRAL SPECIES	50	ENSGT00940000155057.wb.g	ENSGT00940000154996.a.b.a	ENSGT00940000154091.a.b	ENSGT00940000160162.g	ENSGT00510000047494	ENSGT00940000157447.c	ENSGT00940000155491.c	ENSGT00940000159422.b	ENSGT00940000153533.a	ENSGT00940000155399.b	ENSGT00940000157796	ENSGT00550000074827.fb	ENSGT00940000157725.r	ENSGT00940000158086.a.b	ENSGT00940000156817 #21	ENSGT00940000155524.e #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007	ENSGT00940000158166.e	ENSGT00390000017953.A	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837.f.a	ENSGT00940000156124.c.b.c	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b.n.b.b	ENSGT00390000016223.h.b.b	ENSGT00940000162591	ENSGT00940000158689.u
River trout	MODERN SPECIES	37	ENSSTUG00000040186	snx33 (ENSSTUG00000040181)	snupn (ENSSTUG00000040164)	PTPN9 (ENSSTUG00000039923)	sin3aa (ENSSTUG00000039760)	CRABP1 (ENSSTUG00000039709)	skic8 (ENSSTUG00000039670)	slc25a44a (ENSSTUG00000039660)	IREB2 (ENSSTUG00000036287)	ENSSTUG00000036173	psma4 (ENSSTUG00000036080)	OAZ2 (ENSSTUG00000036061)	ENSSTUG00000036055	rbpms2a (ENSSTUG00000036019)	AP3B2 (ENSSTUG00000032986) #21	cpeb1a (ENSSTUG00000032587) #22	ENSSTUG00000032554	snx1a (ENSSTUG00000032431)	snx22 (ENSSTUG00000032321)	bbs4 (ENSSTUG00000031977)	ppib (ENSSTUG00000031898)	ENSSTUG00000031892	ENSSTUG00000031883	ENSSTUG00000031873	PHF21A (ENSSTUG00000031733)	DGKZ (ENSSTUG00000030390)	mdkb (ENSSTUG00000030316)	ambra1b (ENSSTUG00000029908)	NOX5 (ENSSTUG00000029752)	CORO2B (ENSSTUG00000029624)	ITGA11 (ENSSTUG00000028229)
Atlantic salmon	MODERN SPECIES	1	cspg4 (ENSSSAG00000043647)	snx33 (ENSSSAG00000043663)	snupn (ENSSSAG00000043678)	ptpn9 (ENSSSAG00000043735)	sin3aa (ENSSSAG00000044150)	crabp1a (ENSSSAG00000045612)	skic8 (ENSSSAG00000045654)	slc25a44a (ENSSSAG00000083673)	ENSSSAG00000045952	psma4 (ENSSSAG00000046820)	ENSSSAG00000047059	ENSSSAG00000088502	ENSSSAG00000047069	ap3b2 (ENSSSAG00000047335) #21	ENSSSAG00000090066	cpeb1a (ENSSSAG00000061861) #22	ENSSSAG00000062675	snx1a (ENSSSAG00000062746)	ppib (ENSSSAG00000064063)	ENSSSAG00000064081	ENSSSAG00000064126	kcnj11l (ENSSSAG00000064132)	ENSSSAG00000064136	ENSSSAG00000106929	ENSSSAG00000090067	PHF21A (ENSSSAG00000064151)	DGKZ (ENSSSAG00000064260)	mdkb (ENSSSAG00000065281)	ambra1b (ENSSSAG00000065320)	nox5 (ENSSSAG00000065405)	ENSSSAG00000116554
Huchen	MODERN SPECIES	125				snx33 (ENSHHUG00000040682)	snupn (ENSHHUG00000040665)	PTPN9 (ENSHHUG00000040628)	sin3aa (ENSHHUG00000040513)	CRABP1 (ENSHHUG00000040491)	skic8 (ENSHHUG00000040265)	slc25a44a (ENSHHUG00000040263)	IREB2 (ENSHHUG00000040162)	psma4 (ENSHHUG00000039982)	OAZ2 (ENSHHUG00000039977)	RBPMS2 (ENSHHUG00000039872)	AP3B2 (ENSHHUG00000039660) #21	cpeb1a (ENSHHUG00000039353) #22	ENSHHUG00000039322	snx1a (ENSHHUG00000039260)	snx22 (ENSHHUG00000039252)	ppib (ENSHHUG00000039124)	bbs4 (ENSHHUG00000039022)	adpgk (ENSHHUG00000039016)	ENSHHUG00000039012	ENSHHUG00000039005	ENSHHUG00000039000	PHF21A (ENSHHUG00000038950)	DGKZ (ENSHHUG00000038797)
Northern pike	MODERN SPECIES	18	LINGO1 (ENSELUG00000031044)	ENSELUG00000034490	CSPG4 (ENSELUG00000001680)	snx33 (ENSELUG00000023254)	PTPN9 (ENSELUG00000023443)	sin3aa (ENSELUG00000023525)	CRABP1 (ENSELUG00000023551)	skic8 (ENSELUG00000023597)	slc25a44a (ENSELUG00000023613)	IREB2 (ENSELUG00000023666)	psma4 (ENSELUG00000023716)	OAZ2 (ENSELUG00000023755)	ENSELUG00000027462	RBPMS2 (ENSELUG00000023770)	AP3B2 (ENSELUG00000024025) #21	cpeb1a (ENSELUG00000024115) #22	ENSELUG00000024145	snx1a (ENSELUG00000024151)	snx22 (ENSELUG00000028281)	ppib (ENSELUG00000024189)	bbs4 (ENSELUG00000024337)	adpgk (ENSELUG00000024358)	ENSELUG00000024383	ENSELUG00000029217	ENSELUG00000024447	PHF21A (ENSELUG00000024504)	DGKZ (ENSELUG00000024522)	mdkb (ENSELUG00000033212)	ENSELUG00000002647	ambra1b (ENSELUG00000002670)	NOX5 (ENSELUG00000002691)
Clupeocephala	ANCESTRAL SPECIES	512												ENSGT00940000155491.d	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22
Otomorpha	ANCESTRAL SPECIES	78											ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000157725.o	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b	ENSGT00940000164020.c	ENSGT00530000063023.A.a	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000156256	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT00940000160728	ENSGT00390000010067	ENSGT00940000161356	ENSGT00390000001014.`b.a	ENSGT00940000161310
Clupeiformes	ANCESTRAL SPECIES	44	ENSGT00940000158441 #18	ENSGT00510000046704.b.b #17	ENSGT00940000157324 #16	ENSGT00390000011190 #15	ENSGT00940000156756.g #13	ENSGT00390000012913.b #12	ENSGT00940000153942.b #11	ENSGT00390000005844.a.a #10	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000154706.rb.a	ENSGT00940000154688.a.a	ENSGT00940000157725.o	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b	ENSGT00940000164020.c	ENSGT00530000063023.A.a	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000156256	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT00940000160728	ENSGT00390000010067	ENSGT00940000161356	ENSGT00390000001014.`b.a	ENSGT00940000161310
Denticle herring	MODERN SPECIES	7	ENSDCDG00000023987	ENSDCDG00000023986	NPTN (ENSDCDG00000023980)	ENSDCDG00000023976	ENSDCDG00000023974	ENSDCDG00000023971	ENSDCDG00000023969	ENSDCDG00000023968 #13	ENSDCDG00000023967	BTBD1 (ENSDCDG00000023710) #13	TM6SF1 (ENSDCDG00000023621) #12	HDGFL3 (ENSDCDG00000023607) #11	BNC1 (ENSDCDG00000023604) #10	dnaja2a (ENSDCDG00000023601)	rbpms2b (ENSDCDG00000023595)	cpeb1b (ENSDCDG00000023558) #22	ENSDCDG00000023133	ENSDCDG00000023099	DPY19L3 (ENSDCDG00000022609)	ZNF507 (ENSDCDG00000022596)	tshz3b (ENSDCDG00000022594)	ZNF536 (ENSDCDG00000022591)	ccne1 (ENSDCDG00000022577)	zgc:162297 (ENSDCDG00000022567)	ENSDCDG00000022562	C19orf12 (ENSDCDG00000022555)	C19orf12 (ENSDCDG00000022551)	PLEKHF1 (ENSDCDG00000022549)	pop4 (ENSDCDG00000022545)	vstm2b (ENSDCDG00000022538)	uqcrfs1 (ENSDCDG00000034845)
Atlantic herring	MODERN SPECIES	22	ENSCHAG00000023685	gatm (ENSCHAG00000023628)	pde8a (ENSCHAG00000022667) #24	ENSCHAG00000022594	FSD2 (ENSCHAG00000022583) #18	WHAMM (ENSCHAG00000022574) #17	HOMER2 (ENSCHAG00000022545) #16	RAMAC (ENSCHAG00000022537) #15	BTBD1 (ENSCHAG00000022510) #13	TM6SF1 (ENSCHAG00000022465) #12	HDGFL3 (ENSCHAG00000022405) #11	BNC1 (ENSCHAG00000022380) #10	dnaja2a (ENSCHAG00000022281)	oaz2b (ENSCHAG00000022246)	rbpms2b (ENSCHAG00000022237)	cpeb1b (ENSCHAG00000021921) #22	ENSCHAG00000021126	ENSCHAG00000020948	DPY19L3 (ENSCHAG00000020674)	ZNF507 (ENSCHAG00000020656)	tshz3b (ENSCHAG00000020650)	ZNF536 (ENSCHAG00000020641)	ccne1 (ENSCHAG00000020517)	zgc:162297 (ENSCHAG00000020510)	si:ch211-260e23.9 (ENSCHAG00000020508)	si:ch211-260e23.8 (ENSCHAG00000020461)	PLEKHF1 (ENSCHAG00000020435)	pop4 (ENSCHAG00000020421)	vstm2b (ENSCHAG00000020412)	uqcrfs1 (ENSCHAG00000020394)	SHCBP1 (ENSCHAG00000020178)
Otophysi	ANCESTRAL SPECIES	202	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000159628.c	ENSGT00940000155971.d.b.a	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b	ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000157725.o	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b	ENSGT00940000164020.c	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000156256	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00390000009077.c	ENSGT00940000160728	ENSGT00390000010067	ENSGT00940000166163	ENSGT00390000001014.`b.a
Characiphysae	ANCESTRAL SPECIES	247												ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b
Channel catfish	MODERN SPECIES	19	igf2a (ENSIPUG00000022309)	CPT1A (ENSIPUG00000022263)	Edil3 (ENSIPUG00000022233)	HAPLN3 (ENSIPUG00000022227)	ACAN (ENSIPUG00000022176)	traf6 (ENSIPUG00000022164)	ENSIPUG00000022153	trpm5 (ENSIPUG00000022100)	cdkn1ca (ENSIPUG00000022095)	kcnq1.1 (ENSIPUG00000021227)	lingo1b (ENSIPUG00000021214)	Sin3a (ENSIPUG00000021061)	crabp1b (ENSIPUG00000021033)	slc25a44b (ENSIPUG00000021014)	RBPMS (ENSIPUG00000020981)	cpeb1 (ENSIPUG00000020960) #22	mtss1l (ENSIPUG00000020951)	ENSIPUG00000020923	dpy19l3 (ENSIPUG00000020870)	ZNF507 (ENSIPUG00000020853)	TSHZ3 (ENSIPUG00000020845)	znf536 (ENSIPUG00000020834)	nr1h3 (ENSIPUG00000019883)	ENSIPUG00000019875	madd (ENSIPUG00000019744)	Bbox1 (ENSIPUG00000019724)	fibin (ENSIPUG00000019720)	muc15 (ENSIPUG00000019713)	dis3l (ENSIPUG00000019669)	tipin (ENSIPUG00000019666)	crybgx (ENSIPUG00000019649)
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT00940000160745.c	ENSGT00940000164715.a	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000159628.c	ENSGT00940000155971.d.b.a.c	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b	ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b	ENSGT00940000164020.c	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000159068	ENSGT00940000156718	ENSGT00530000063582.b	ENSGT00390000007623.c	ENSGT01030000235035	ENSGT00530000063106.B	ENSGT00390000005764.`b	ENSGT00940000157369.b
Characoidei	ANCESTRAL SPECIES	385												ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b
Red-bellied piranha	MODERN SPECIES	274	mfge8a (ENSPNAG00000016071)	HAPLN3 (ENSPNAG00000016115)	ENSPNAG00000016138	ENSPNAG00000016165	ENSPNAG00000016325	traf6 (ENSPNAG00000016363)	ENSPNAG00000003414	trpm5 (ENSPNAG00000016424)	cdkn1ca (ENSPNAG00000016430)	KCNQ1 (ENSPNAG00000016551)	lingo1b (ENSPNAG00000016558)	ENSPNAG00000016643	crabp1b (ENSPNAG00000016664)	slc25a44b (ENSPNAG00000016680)	rbpms2b (ENSPNAG00000004816)	cpeb1b (ENSPNAG00000016750) #22	ENSPNAG00000016828
Mexicana tetra	MODERN SPECIES	289													ENSAMXG00000004608	slc25a44b (ENSAMXG00000037830)	rbpms2b (ENSAMXG00000037525)	cpeb1b (ENSAMXG00000004808) #22	ENSAMXG00000019176
Electric eel	MODERN SPECIES	82					UACA (ENSEEEG00000020165)	ENSEEEG00000020166	PIAS1 (ENSEEEG00000020167)	skor1a (ENSEEEG00000020172)	map2k5 (ENSEEEG00000020174)	smad3a (ENSEEEG00000020177)	smad6a (ENSEEEG00000020182)	ENSEEEG00000020190	lctla (ENSEEEG00000020199)	tipin (ENSEEEG00000020200)	rbpms2b (ENSEEEG00000020201)	cpeb1b (ENSEEEG00000020204) #22	ENSEEEG00000020205	ENSEEEG00000020206	DPY19L3 (ENSEEEG00000020207)	ZNF507 (ENSEEEG00000020208)	tshz3b (ENSEEEG00000020209)	ZNF536 (ENSEEEG00000020210)	nr1h3 (ENSEEEG00000020215)	MADD (ENSEEEG00000020444)	bbox1 (ENSEEEG00000021039)	fibinb (ENSEEEG00000021042)	ENSEEEG00000021043	dis3l (ENSEEEG00000021047)	slc25a44b (ENSEEEG00000021048)	crabp1b (ENSEEEG00000021052)	ENSEEEG00000021083
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000160745.c	ENSGT01060000248595.b.a.b.a.n.b	ENSGT00940000156049.b	ENSGT00940000155971.d.b.b.b	ENSGT00940000155971.d.b.a	ENSGT00940000155426	ENSGT00530000063981.b.d	ENSGT00940000160588	ENSGT00940000164990.d	ENSGT00940000154996.a.b.b	ENSGT00940000155491.d	ENSGT00940000159422.b	ENSGT00940000155399.a	ENSGT00940000157725.o	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00950000183156.b	ENSGT00940000164020.c	ENSGT00530000063023.A.a	ENSGT00940000180790	ENSGT00490000043434	ENSGT00950000183051.b.a	ENSGT00940000156397.a.a	ENSGT00940000156256	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00390000009077.c.w.a	ENSGT00390000009077.c.w.b	ENSGT00940000171971	ENSGT00390000009077.c.x.a	ENSGT00980000200433
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	235	ENSGT00940000157661.e.b.a	ENSGT01050000244857.A.a.b.f.b	ENSGT00940000161238.l.b	ENSGT01060000248595.b.a.b.a.n.b.a	ENSGT00940000156049.b.b	ENSGT00940000155971.d.b.b.b	ENSGT00940000160588.i.b	ENSGT00940000162677.q.b	ENSGT00940000164990.d.h	ENSGT00940000154996.a.b.b.b	ENSGT00940000155491.d.i.a	ENSGT00940000159422.b.b	ENSGT00940000155399.a.j	ENSGT00940000157725.o.b	ENSGT00940000158086.a.a	ENSGT00940000155524.f.a.a #22	ENSGT00950000183156.b.a.b	ENSGT00940000164020.c.b	ENSGT00530000063023.A.a.k	ENSGT00490000043434.k	ENSGT00950000183051.b.a.j	ENSGT00940000156397.a.a.m	ENSGT00390000009077.c.w.a.a	ENSGT00390000009077.c.w.b.a	ENSGT00940000156256.g	ENSGT00940000171971	ENSGT00390000009077.c.x.a	ENSGT00940000160728.o.b	ENSGT00390000010067.m.b	ENSGT00940000166163.b	ENSGT00390000001014.`b.a.i
Cyprininae_a	ANCESTRAL SPECIES	232	ENSGT00940000161238.l.b	ENSGT01060000248595.b.a.b.a.n.b.a	ENSGT00940000156049.b.b	ENSGT00940000155971.d.b.a.e	ENSGT00940000155426.m	ENSGT00530000063981.b.d	ENSGT00940000160588.i.b	ENSGT00940000162677.q.b	ENSGT00940000164990.d.h	ENSGT00940000154996.a.b.b.b	ENSGT00940000155491.d.i.a	ENSGT00940000159422.b.b	ENSGT00940000155399.a.j	ENSGT00940000157725.o.b	ENSGT00940000158086.a.a	ENSGT00940000155524.f.a.a #22	ENSGT00950000183156.b.a.b	ENSGT00940000164020.c.b	ENSGT00530000063023.A.a.k	ENSGT00490000043434.k	ENSGT00950000183051.b.a.j	ENSGT00390000009077.c.w.a.a	ENSGT00390000009077.c.w.b.a	ENSGT00940000156397.a.a.m	ENSGT00940000156256.g	ENSGT00940000171971	ENSGT00390000009077.c.x.a	ENSGT00390000010067.m.b	ENSGT00940000160728.p	ENSGT00390000010067.m.a	ENSGT00940000166163.b
Common carp reference	MODERN SPECIES	6	mfge8a (ENSCCRG00000014023)	cpt1aa (ENSCCRG00000014043)	ENSCCRG00000040986	ENSCCRG00000075367	traf6 (ENSCCRG00000062778)	ENSCCRG00000041182	trpm5 (ENSCCRG00000031644)	cdkn1ca (ENSCCRG00000031636)	kcnq1.1 (ENSCCRG00000031183)	lingo1b (ENSCCRG00000016371)	ENSCCRG00000019911	crabp1b (ENSCCRG00000028771)	slc25a44b (ENSCCRG00000028767)	oaz2b (ENSCCRG00000079922)	ENSCCRG00000064787	cpeb1b (ENSCCRG00000026443) #22	ENSCCRG00000003402	ENSCCRG00000080598	DPY19L3 (ENSCCRG00000011331)	ENSCCRG00000078669	ENSCCRG00000019521	ZNF507 (ENSCCRG00000056447)	tshz3b (ENSCCRG00000058301)	ENSCCRG00000082196	ENSCCRG00000060186	si:ch211-260e23.8 (ENSCCRG00000043755)	CCNE1 (ENSCCRG00000042203)	ENSCCRG00000024952	ENSCCRG00000043769	PLEKHF1 (ENSCCRG00000056673)	shcbp1 (ENSCCRG00000017987)
Goldfish	MODERN SPECIES	25	ENSCARG00000014144	ENSCARG00000014130	cpt1aa (ENSCARG00000013955)	traf6 (ENSCARG00000013932)	trpm5 (ENSCARG00000013916)	cdkn1ca (ENSCARG00000013903)	kcnq1.1 (ENSCARG00000013742)	ENSCARG00000013712	ENSCARG00000013710	lingo1b (ENSCARG00000013700)	ENSCARG00000013639	crabp1b (ENSCARG00000013622)	slc25a44b (ENSCARG00000013616)	oaz2b (ENSCARG00000013608)	rbpms2b (ENSCARG00000013605)	cpeb1b (ENSCARG00000013505) #22	ENSCARG00000011951	ENSCARG00000011899	ENSCARG00000011892	ENSCARG00000011674	ENSCARG00000011663	ttyh3b (ENSCARG00000011635)	iqce (ENSCARG00000011619)	ENSCARG00000011610	grk4 (ENSCARG00000008463)	tspan5b (ENSCARG00000008342)	slc24a2 (ENSCARG00000008301)	saraf (ENSCARG00000008289)	pla2g12a (ENSCARG00000008282)	xpa (ENSCARG00000008200)	ENSCARG00000008192
Cyprininae	ANCESTRAL SPECIES	35	ENSGT00530000063981.b.d	ENSGT00940000160588.i.a	ENSGT00940000162677.q.a	ENSGT00940000164990.d.g	ENSGT00940000154996.a.b.b.a	ENSGT00940000155491.d.i.b	ENSGT00940000159422.b.a	ENSGT00940000155399.a.i	ENSGT00940000157725.o.a	ENSGT00940000153533.a.t	ENSGT00940000155399.b.d	ENSGT00940000157796.d	ENSGT00550000074827.fb.a	ENSGT00940000157725.p.a	ENSGT00940000158086.b	ENSGT00940000155524.f.a.b #22	ENSGT00950000183156.b.a.a	ENSGT00940000164020.c.a	ENSGT00530000063023.A.a.l	ENSGT00490000043434.l	ENSGT00950000183051.b.a.i	ENSGT00940000156397.a.a.n	ENSGT00940000156256.h	ENSGT00390000006020	ENSGT00530000063829.B	ENSGT00390000009077.c.w.a.b	ENSGT00390000009077.c.x.b	ENSGT00940000160728.o.a	ENSGT00390000010067.n	ENSGT00940000166163.a	ENSGT00390000001014.`b.a.j
Cyprininae_a	ANCESTRAL SPECIES	55	ENSGT00940000160745.c	ENSGT01060000248595.b.a.b.a.n.b.b	ENSGT00940000156049.b.a	ENSGT00940000155971.d.b.b.b	ENSGT00940000155971.d.b.a.f	ENSGT00940000155426.n	ENSGT00940000160588.i.a	ENSGT00940000162677.q.a	ENSGT00940000164990.d.g	ENSGT00940000154996.a.b.b.a	ENSGT00940000155491.d.i.b	ENSGT00940000159422.b.a	ENSGT00940000155399.a.i	ENSGT00940000157725.o.a	ENSGT00940000158086.b	ENSGT00940000155524.f.a.b #22	ENSGT00950000183156.b.a.a	ENSGT00940000164020.c.a	ENSGT00530000063023.A.a.l	ENSGT00490000043434.l	ENSGT00950000183051.b.a.i	ENSGT00940000156397.a.a.n	ENSGT00940000156256.h	ENSGT00390000006020.e	ENSGT00530000063829.B	ENSGT00390000009077.c.w.a.b	ENSGT00390000009077.c.w.b.b	ENSGT00390000009077.c.x.b	ENSGT00940000160728.o.a	ENSGT00390000010067.n	ENSGT00940000166163.a
Common carp reference	MODERN SPECIES		ENSCCRG00000054102	igf2a (ENSCCRG00000044723)	cpt1aa (ENSCCRG00000050268)	mfge8a (ENSCCRG00000082007)	ENSCCRG00000002468	traf6 (ENSCCRG00000002480)	trpm5 (ENSCCRG00000048269)	cdkn1ca (ENSCCRG00000048268)	kcnq1.1 (ENSCCRG00000016379)	lingo1b (ENSCCRG00000031226)	ENSCCRG00000028802	crabp1b (ENSCCRG00000075230)	slc25a44b (ENSCCRG00000054943)	oaz2b (ENSCCRG00000059970)	ENSCCRG00000026468	cpeb1b (ENSCCRG00000019545) #22	ENSCCRG00000066563	ENSCCRG00000066727	DPY19L3 (ENSCCRG00000014957)	ZNF507 (ENSCCRG00000055316)	ENSCCRG00000056446	tshz3b (ENSCCRG00000059209)	ZNF536 (ENSCCRG00000060867)	ccne1 (ENSCCRG00000024938)	zgc:162297 (ENSCCRG00000024949)	si:ch211-260e23.9 (ENSCCRG00000056184)	si:ch211-260e23.8 (ENSCCRG00000024961)	C19orf12 (ENSCCRG00000040749)	PLEKHF1 (ENSCCRG00000062173)	pop4 (ENSCCRG00000040740)	shcbp1 (ENSCCRG00000043786)
Goldfish	MODERN SPECIES	47	ENSCARG00000012855	igf2a (ENSCARG00000012839)	cpt1aa (ENSCARG00000012769)	mfge8a (ENSCARG00000012694)	ENSCARG00000012673	traf6 (ENSCARG00000012659)	ENSCARG00000012650	trpm5 (ENSCARG00000012633)	cdkn1ca (ENSCARG00000012621)	kcnq1.1 (ENSCARG00000012583)	lingo1b (ENSCARG00000012574)	ENSCARG00000012553	crabp1b (ENSCARG00000012540)	oaz2b (ENSCARG00000012528)	ENSCARG00000012505	cpeb1b (ENSCARG00000011975) #22	ENSCARG00000011626	ENSCARG00000011546	DPY19L3 (ENSCARG00000011496)	ZNF507 (ENSCARG00000011487)	tshz3b (ENSCARG00000011481)	ZNF536 (ENSCARG00000011463)	ccne1 (ENSCARG00000011436)	zgc:162297 (ENSCARG00000011421)	si:ch211-260e23.9 (ENSCARG00000011409)	si:ch211-260e23.8 (ENSCARG00000011404)	C19orf12 (ENSCARG00000011362)	PLEKHF1 (ENSCARG00000011346)	pop4 (ENSCARG00000011260)	shcbp1 (ENSCARG00000010939)	uqcrfs1 (ENSCARG00000010913)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000155524.f.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155524.f.b #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	218	ENSSGRG00000051030	cpt1aa (ENSSGRG00000050817)	ENSSGRG00000050802	traf6 (ENSSGRG00000050792)	traf6 (ENSSGRG00000050779)	ENSSGRG00000050774	ENSSGRG00000050773	kcnq1.1 (ENSSGRG00000050771)	lingo1b (ENSSGRG00000050770)	ENSSGRG00000050348	crabp1b (ENSSGRG00000050336)	slc25a44b (ENSSGRG00000050333)	SEMA4B (ENSSGRG00000050332)	harbi2 (ENSSGRG00000050331)	oaz2b (ENSSGRG00000050329)	cpeb1b (ENSSGRG00000050285) #22	ENSSGRG00000050032
Golden-line barbel	MODERN SPECIES	3216																cpeb1b (ENSSGRG00000005221) #22
Zebrafish	MODERN SPECIES	22	igf2a (ENSDARG00000018643)	cpt1aa (ENSDARG00000059770)	mfge8a (ENSDARG00000015349)	ENSDARG00000035891	traf6 (ENSDARG00000028058)	ENSDARG00000105788	trpm5 (ENSDARG00000059792)	cdkn1ca (ENSDARG00000010878)	kcnq1.1 (ENSDARG00000059798)	lingo1b (ENSDARG00000035899)	ENSDARG00000059812	crabp1b (ENSDARG00000035904)	slc25a44b (ENSDARG00000035905)	oaz2b (ENSDARG00000059815)	rbpms2b (ENSDARG00000079578)	cpeb1b (ENSDARG00000008454) #22	ENSDARG00000087260	ENSDARG00000078088	ENSDARG00000111309	DPY19L3 (ENSDARG00000079013)	ENSDARG00000099159	ZNF507 (ENSDARG00000052164)	ENSDARG00000113027	tshz3b (ENSDARG00000103361)	ZNF536 (ENSDARG00000103648)	ccne1 (ENSDARG00000098622)	zgc:162297 (ENSDARG00000100912)	si:ch211-260e23.9 (ENSDARG00000102572)	C7H19orf12 (ENSDARG00000105232)	C7H19orf12 (ENSDARG00000102929)	C7H19orf12 (ENSDARG00000104856)
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000161285.b	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.b #23	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00510000048252
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00440000037417.A	ENSGT00940000158268.a	ENSGT00390000004456	ENSGT00940000156734.b	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000166520.i.b	ENSGT00940000158086.a.a	ENSGT00940000155524.f #22	ENSGT00390000006548.b #23	ENSGT00940000164795	ENSGT00390000018319.a.a.a.b.c	ENSGT00390000006548.a.b.b ##23	ENSGT00940000155628	ENSGT00510000048252	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b	ENSGT00940000153899.b.b	ENSGT00940000160201	ENSGT00390000016718	ENSGT00940000158927	ENSGT00940000164520	ENSGT00940000159320	ENSGT01030000234638.b.b.c.a	ENSGT00940000157220.b #36
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00940000156734.b.c	ENSGT01010000222360.D.b.d	ENSGT00940000155391.a.b.b.g	ENSGT00390000001443.g	ENSGT00550000075025	ENSGT00390000007681.b.a.a.s.b.a	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.b	ENSGT00940000166520.i.b	ENSGT00940000157725.q.a	ENSGT00940000158086.a.a.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.b.a.b ##23	ENSGT00940000155628.cb.a.b	ENSGT00940000155889.c	ENSGT00940000156684.a.a.a	ENSGT00940000156684.a.a.b	ENSGT00940000158166.f	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c.d	ENSGT00940000159819.p	ENSGT01030000234518.B.a.b.a.a
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00550000075025.a.a	ENSGT00390000007681.b.a.a.s.b.a	ENSGT01100000263521.a.a.b.a.a.d.b.b.b	ENSGT01100000263507.A	ENSGT00390000017361.w	ENSGT00940000155491.d	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000159422.a.b.a.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.b	ENSGT00940000166520.i.b	ENSGT00940000158086.a.a.b.b	ENSGT00940000157725.q.a	ENSGT00940000158086.a.a.b.a	ENSGT00940000155524.f #22	ENSGT00390000006548.a.b.a.b ##23	ENSGT00940000155628.cb.a.b	ENSGT00940000155889.c	ENSGT00940000156684.a.a.a	ENSGT01100000264124.a	ENSGT00940000156684.a.a.b	ENSGT00940000158166.f	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b.c	ENSGT00390000005300	ENSGT00940000154617.B.c.d	ENSGT00940000159819.p.a
Salmo	ANCESTRAL SPECIES	110	ENSGT01010000222360.D.b.d	ENSGT00940000155391.a.b.b.h	ENSGT01100000263521.a.a.b.a.a.d.b.b.b	ENSGT01100000263507.A	ENSGT00390000017361.w.a	ENSGT00940000155491.d.a	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000156734.b.c	ENSGT00940000159422.a.b.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000157725.q.a	ENSGT00940000166520.i.b.d	ENSGT00940000158086.a.a.b.b	ENSGT00940000158086.a.a.b.a	ENSGT00940000155524.f #22	ENSGT00390000006548.a.b.a.b.a ##23	ENSGT00390000006548.a.b.a.b.b ##23	ENSGT00940000155628.cb.a.b	ENSGT00940000155889.c.e	ENSGT00940000156684.a.a.a	ENSGT01100000264124.a.b	ENSGT00940000156684.a.a.b	ENSGT00940000158166.f.a	ENSGT00940000156476.g.c	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b.c.b	ENSGT00390000005300	ENSGT00940000154617.B.c.d
River trout	DUPLICATION
River trout	MODERN SPECIES	21	wt1b (ENSSTUG00000044183)	pax6b (ENSSTUG00000044165)	elp4 (ENSSTUG00000044112)	immp1l (ENSSTUG00000044099)	ENSSTUG00000044095	ENSSTUG00000044092	ENSSTUG00000044087	taldo1 (ENSSTUG00000044076)	ENSSTUG00000043955	CRABP1 (ENSSTUG00000043937)	slc25a44b (ENSSTUG00000043930)	PSMA4 (ENSSTUG00000043904)	OAZ2 (ENSSTUG00000043891)	ENSSTUG00000043867	rbpms2b (ENSSTUG00000043809)	cpeb1b (ENSSTUG00000043475) #22	ENSSTUG00000043427 ##23	csnk1g1 (ENSSTUG00000043319)	SNX1 (ENSSTUG00000043186)	neo1a (ENSSTUG00000037337)	ENSSTUG00000037205	BBS4 (ENSSTUG00000037011)	scamp2l (ENSSTUG00000036978)	myo9aa (ENSSTUG00000035928)	senp8 (ENSSTUG00000035885)	GRAMD2A (ENSSTUG00000035874)	znf609b (ENSSTUG00000035858)	trip4 (ENSSTUG00000035828)	chrna7a (ENSSTUG00000035766)	ADAMTS7 (ENSSTUG00000019032)	ENSSTUG00000018967
River trout	MODERN SPECIES	3	eif3m (ENSSTUG00000027790)	wt1b (ENSSTUG00000027833)	RCN1 (ENSSTUG00000027892)	pax6b (ENSSTUG00000027911)	ENSSTUG00000028295	ENSSTUG00000028306	ENSSTUG00000028310	taldo1 (ENSSTUG00000028319)	ENSSTUG00000028420	CRABP1 (ENSSTUG00000029135)	slc25a44b (ENSSTUG00000029150)	PSMA4 (ENSSTUG00000029163)	ENSSTUG00000029189	ENSSTUG00000029196	rbpms2b (ENSSTUG00000029225)	cpeb1b (ENSSTUG00000029274) #22	ENSSTUG00000029419 ##23	csnk1g1 (ENSSTUG00000029446)	SNX1 (ENSSTUG00000029890)	neo1a (ENSSTUG00000030256)	ENSSTUG00000034683	ENSSTUG00000034689	BBS4 (ENSSTUG00000034697)	ENSSTUG00000034748	scamp2l (ENSSTUG00000034754)	myo9aa (ENSSTUG00000034790)	ENSSTUG00000035377	senp8 (ENSSTUG00000000750)	GRAMD2A (ENSSTUG00000000929)	znf609b (ENSSTUG00000001800)	trip4 (ENSSTUG00000002595)
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	18	pax6b (ENSSSAG00000036952)	elp4 (ENSSSAG00000092465)	immp1l (ENSSSAG00000004002)	mpped2a (ENSSSAG00000106136)	ENSSSAG00000115797	ENSSSAG00000087634	ENSSSAG00000116047	ENSSSAG00000065246	ENSSSAG00000075948	ENSSSAG00000076000	ENSSSAG00000009605	slc25a44b (ENSSSAG00000104090)	psa4 (ENSSSAG00000099440)	ENSSSAG00000077048	RBPMS (ENSSSAG00000077072)	cpeb1b (ENSSSAG00000077105) #22	ENSSSAG00000067729 ##23	ENSSSAG00000091654	ENSSSAG00000072166	ENSSSAG00000066877	ENSSSAG00000091437	ENSSSAG00000066229	scamp2l (ENSSSAG00000085603)	MYO9A (ENSSSAG00000063830)	senp8 (ENSSSAG00000120210)	ENSSSAG00000115138	GRAMD2A (ENSSSAG00000063742)	ENSSSAG00000063735	trip4 (ENSSSAG00000063707)	ENSSSAG00000112266	ENSSSAG00000063246
Atlantic salmon	MODERN SPECIES	2	RCN1 (ENSSSAG00000109606)	pax6b (ENSSSAG00000009913)	elp4 (ENSSSAG00000111445)	immp1l (ENSSSAG00000052305)	mpped2a (ENSSSAG00000110120)	ENSSSAG00000113325	ENSSSAG00000087820	ENSSSAG00000084273	ENSSSAG00000089039	ENSSSAG00000077027	slc25a44b (ENSSSAG00000077033)	psma4 (ENSSSAG00000091971)	ENSSSAG00000099295	ENSSSAG00000077067	RBPMS (ENSSSAG00000072843)	cpeb1b (ENSSSAG00000072480) #22	ENSSSAG00000105721 ##23	ENSSSAG00000072301	ENSSSAG00000045260	ENSSSAG00000092555	ENSSSAG00000087429	ENSSSAG00000109447	ENSSSAG00000101490	ENSSSAG00000101281	trip4 (ENSSSAG00000102385)	ENSSSAG00000063648	ENSSSAG00000082053	ENSSSAG00000063200	ENSSSAG00000084875	itga11a (ENSSSAG00000102694)	CORO2B (ENSSSAG00000065753)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000006758.b.k.a	ENSGT00950000182976.a.b.d	ENSGT00440000037417.A	ENSGT00940000158268.a	ENSGT00390000004456.c	ENSGT00940000156734.b.d.a.a	ENSGT01100000263521.a.a.b.a.a.d.b.b.b	ENSGT01100000263507.A	ENSGT00390000017361.w	ENSGT00940000155491.d	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000166520.i.b	ENSGT00940000158086.a.a.b.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.b.a.b ##23	ENSGT00940000155628.cb.a.b	ENSGT00940000155889.c	ENSGT00940000156684.a.a.a	ENSGT01100000264124.a	ENSGT00940000156684.a.a.b	ENSGT00940000158166.f	ENSGT00940000156476.g	ENSGT00940000154905.i.a.g.b	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b.d.a	ENSGT00390000005300	ENSGT00940000154617.B.c.c	ENSGT00940000159819.o.a
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	27	RCN1 (ENSOMYG00000072716)	pax6b (ENSOMYG00000020469)	elp4 (ENSOMYG00000021230)	immp1l (ENSOMYG00000021274)	ENSOMYG00000072378	mpped2a (ENSOMYG00000072518)	ENSOMYG00000020377	ENSOMYG00000021311	ENSOMYG00000021335	ENSOMYG00000021569	crabp1b (ENSOMYG00000052225)	slc25a44b (ENSOMYG00000021912)	ENSOMYG00000002105	ENSOMYG00000021945	ENSOMYG00000068055	cpeb1b (ENSOMYG00000001868) #22	ENSOMYG00000001633 ##23	ENSOMYG00000077249	ENSOMYG00000037199	ENSOMYG00000071633	ENSOMYG00000061314	ENSOMYG00000076704	ENSOMYG00000076609	scamp2l (ENSOMYG00000061258)	MYO9A (ENSOMYG00000068398)	ENSOMYG00000073179	ENSOMYG00000069030	ENSOMYG00000053859	senp8 (ENSOMYG00000056501)	GRAMD2A (ENSOMYG00000054398)	ENSOMYG00000055473
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000058789	mpped2a (ENSOMYG00000068669)	ENSOMYG00000065576	ENSOMYG00000067043	ENSOMYG00000076959	ENSOMYG00000066154	ENSOMYG00000020385	ENSOMYG00000020482	crabp1b (ENSOMYG00000062647)	slc25a44b (ENSOMYG00000027293)	ENSOMYG00000021936	ENSOMYG00000067770	ENSOMYG00000054289	rbpms2b (ENSOMYG00000001945)	ENSOMYG00000074673	cpeb1b (ENSOMYG00000001708) #22	ENSOMYG00000039138 ##23	ENSOMYG00000055753	ENSOMYG00000038587	ENSOMYG00000037047	ENSOMYG00000037020	ENSOMYG00000075759	ENSOMYG00000036846	scamp2l (ENSOMYG00000036789)	MYO9A (ENSOMYG00000036756)	ENSOMYG00000054738	senp8 (ENSOMYG00000061543)	GRAMD2A (ENSOMYG00000060016)	ENSOMYG00000052846	ENSOMYG00000036742	trip4 (ENSOMYG00000034685)
Oncorhynchus_a	ANCESTRAL SPECIES	111										ENSGT00390000017361.w	ENSGT00940000155491.d	ENSGT00940000159422.a.b.a.a.a	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.a.a.b.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.b.a.b ##23	ENSGT00940000155628.cb.a.a	ENSGT00940000155889.c	ENSGT00940000156684.a.a.a	ENSGT01100000264124.a	ENSGT00940000156684.a.a.b	ENSGT00940000158166.f	ENSGT00940000156476.g	ENSGT00940000154905.i.a.g.b	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b.d.a	ENSGT00390000005300	ENSGT00940000154617.B.c.c	ENSGT00940000159819.o.a
Coho salmon	MODERN SPECIES	32	RCN1 (ENSOKIG00005047926)	pax6b (ENSOKIG00005047942)	elp4 (ENSOKIG00005047988)	immp1l (ENSOKIG00005048001)	mpped2a (ENSOKIG00005048010)	ENSOKIG00005048024	ENSOKIG00005048025	ENSOKIG00005048028	ENSOKIG00005048053	CRABP1 (ENSOKIG00005048126)	slc25a44b (ENSOKIG00005048140)	PSMA4 (ENSOKIG00005048148)	ENSOKIG00005048158	ENSOKIG00005048165	rbpms2b (ENSOKIG00005048170)	cpeb1b (ENSOKIG00005048186) #22	RPS17 (ENSOKIG00005048223) ##23	csnk1g1 (ENSOKIG00005048253)	SNX1 (ENSOKIG00005048315)	neo1a (ENSOKIG00005048491)	ENSOKIG00005049047	BBS4 (ENSOKIG00005049058)	scamp2l (ENSOKIG00005049071)	myo9aa (ENSOKIG00005049125)	senp8 (ENSOKIG00005049518)	GRAMD2A (ENSOKIG00005049524)	ZNF609 (ENSOKIG00005049533)	ENSOKIG00005049542	trip4 (ENSOKIG00005020947)	ENSOKIG00005020997	trip4 (ENSOKIG00005021277)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4234															rbpms2b (ENSHHUG00000044318)	cpeb1b (ENSHHUG00000044333) #22	zgc:114188 (ENSHHUG00000044353) ##23	csnk1g1 (ENSHHUG00000044357)
Huchen	MODERN SPECIES	6487															RBPMS2 (ENSHHUG00000002808)	cpeb1b (ENSHHUG00000002797) #22
Northern pike	MODERN SPECIES	1	CHST1 (ENSELUG00000021051)	smad6a (ENSELUG00000021062)	SMAD3 (ENSELUG00000021087)	map2k5 (ENSELUG00000021260)	skor1a (ENSELUG00000021269)	PIAS1 (ENSELUG00000021305)	ENSELUG00000022543	ENSELUG00000021372	UACA (ENSELUG00000021409)	tle3a (ENSELUG00000021491)	ENSELUG00000021509	kif23 (ENSELUG00000021675)	paqr5b (ENSELUG00000021700)	ENSELUG00000021715	rbpms2b (ENSELUG00000021784)	cpeb1b (ENSELUG00000021835) #22	ENSELUG00000021867 #23	csnk1g1 (ENSELUG00000021940)	SNX1 (ENSELUG00000021970)	neo1a (ENSELUG00000022006)	BBS4 (ENSELUG00000022069)	scamp2l (ENSELUG00000022128)	myo9aa (ENSELUG00000022255)	senp8 (ENSELUG00000022283)	GRAMD2A (ENSELUG00000022330)	znf609b (ENSELUG00000022394)	trip4 (ENSELUG00000022449)	chrna7a (ENSELUG00000022503)	ADAMTS7 (ENSELUG00000022525)	ENSELUG00000021321	calml4a (ENSELUG00000022560)
Acanthomorphata	ANCESTRAL SPECIES	79	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00940000157859.a.a	ENSGT00940000159819	ENSGT01030000234518.B.a.b.a.a
Cod	MODERN SPECIES	5	sord (ENSGMOG00000005792)	ENSGMOG00000023464	ENSGMOG00000022977	ENSGMOG00000005780	ENSGMOG00000000734	ENSGMOG00000037234	ENSGMOG00000000703	ENSGMOG00000000683	ENSGMOG00000035890	ddb1 (ENSGMOG00000019386)	ENSGMOG00000027098	taldo1 (ENSGMOG00000008530)	ENSGMOG00000008509	ENSGMOG00000008507	ENSGMOG00000008502	cpeb1b (ENSGMOG00000008495) #22	ENSGMOG00000008493 ##23	ENSGMOG00000008486	ENSGMOG00000008480	ENSGMOG00000008470	ENSGMOG00000008465	scamp2l (ENSGMOG00000008464)	MYO9A (ENSGMOG00000008460)	senp8 (ENSGMOG00000020413)	GRAMD2A (ENSGMOG00000026025)	ENSGMOG00000008457	trip4 (ENSGMOG00000008455)	ENSGMOG00000008452	ENSGMOG00000008451	ENSGMOG00000015813	ENSGMOG00000020315
Euacanthomorphacea	ANCESTRAL SPECIES	46	ENSGT00940000156718	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00940000161115	ENSGT00400000022240	ENSGT00940000157859.a.a
Pinecone sodierfish	MODERN SPECIES	17	ENSMMDG00005022708	KCNA4 (ENSMMDG00005022710)	cd151l (ENSMMDG00005022711)	TMEM138 (ENSMMDG00005022717)	ddb1 (ENSMMDG00005022725)	tspan4a (ENSMMDG00005022747)	taldo1 (ENSMMDG00005022750)	ENSMMDG00005022753	CRABP1 (ENSMMDG00005022772)	slc25a44b (ENSMMDG00005022777)	ENSMMDG00005022781	ENSMMDG00005022783	foxr1 (ENSMMDG00005022784)	PSMA4 (ENSMMDG00005022788)	rbpms2a (ENSMMDG00005022790)	cpeb1b (ENSMMDG00005022794) #22	rps17 (ENSMMDG00005022801) ##23	csnk1g1 (ENSMMDG00005022809)	SNX1 (ENSMMDG00005022829)	neo1a (ENSMMDG00005023049)	ENSMMDG00005024371	bbs4 (ENSMMDG00005024374)	scamp2l (ENSMMDG00005024378)	ENSMMDG00005024380	ENSMMDG00005024382	tpcn2 (ENSMMDG00005024383)	pop4 (ENSMMDG00005024385)	PLEKHF1 (ENSMMDG00005024386)	PLEKHF1 (ENSMMDG00005024387)	ENSMMDG00005024388	ENSMMDG00005024393
Percomorphaceae	ANCESTRAL SPECIES	15	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00940000161115	ENSGT00400000022240	ENSGT00940000157859.a.a
Tiger tail seahorse	MODERN SPECIES	348	nr1h3 (ENSHCOG00000018788)	arl14ep (ENSHCOG00000018772)	ENSHCOG00000018757	KCNA4 (ENSHCOG00000018745)	cd151l (ENSHCOG00000018727)	TMEM138 (ENSHCOG00000000699)	ENSHCOG00000018702	ddb1 (ENSHCOG00000018670)	tspan4a (ENSHCOG00000018614)	taldo1 (ENSHCOG00000018581)	ENSHCOG00000000491	CRABP1 (ENSHCOG00000018495)	slc25a44b (ENSHCOG00000018477)	PSMA4 (ENSHCOG00000018467)	rbpms2a (ENSHCOG00000018429)	cpeb1b (ENSHCOG00000018389) #22	rps17 (ENSHCOG00000018369) ##23	csnk1g1 (ENSHCOG00000018328)	SNX1 (ENSHCOG00000018245)	neo1a (ENSHCOG00000018213)	ENSHCOG00000018154	bbs4 (ENSHCOG00000018150)	scamp2l (ENSHCOG00000018108)	myo9aa (ENSHCOG00000018080)	senp8 (ENSHCOG00000017965)	GRAMD2A (ENSHCOG00000017945)	znf609b (ENSHCOG00000000785)	trip4 (ENSHCOG00000017904)	chrna7a (ENSHCOG00000000482)	cln6a (ENSHCOG00000017871)	calml4a (ENSHCOG00000017844)
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Aplocheiloidei	ANCESTRAL SPECIES	39	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Turquoise killifish	MODERN SPECIES	1616	CD151L (ENSNFUG00015010147)	TMEM138 (ENSNFUG00015010161)	ENSNFUG00015010197	RBPMS2 (ENSNFUG00015010258)	PSMA4 (ENSNFUG00015010422)	SLC25A44B (ENSNFUG00015010445)	ENSNFUG00015010465	CRABP1 (ENSNFUG00015010469)	ENSNFUG00015010561	ENSNFUG00015011557	TALDO1 (ENSNFUG00015011563)	tspan4a (ENSNFUG00015011595)	ENSNFUG00015011635	ENSNFUG00015011640	ddb1 (ENSNFUG00015011669)	cpeb1b (ENSNFUG00015011924) #22	rps17 (ENSNFUG00015012157) ##23	csnk1g1 (ENSNFUG00015012200)	ENSNFUG00015004202	SNX1 (ENSNFUG00015004220)	neo1a (ENSNFUG00015004425)	bbs4 (ENSNFUG00015005081)	scamp2l (ENSNFUG00015005253)	myo9aa (ENSNFUG00015005408)	SENP8 (ENSNFUG00015005915)	GRAMD2A (ENSNFUG00015005918)	ZNF609 (ENSNFUG00015005923)	ENSNFUG00015005931	ENSNFUG00015005934	trip4 (ENSNFUG00015005942)	chrna7a (ENSNFUG00015006009)
Mangrove rivulus	MODERN SPECIES	28	nr1h3 (ENSKMAG00000002680)	arl14ep (ENSKMAG00000002666)	ENSKMAG00000002597	KCNA4 (ENSKMAG00000002584)	cd151l (ENSKMAG00000002541)	TMEM138 (ENSKMAG00000002513)	ENSKMAG00000002425	ddb1 (ENSKMAG00000002315)	tspan4a (ENSKMAG00000002302)	taldo1 (ENSKMAG00000002254)	ENSKMAG00000002138	CRABP1 (ENSKMAG00000002113)	slc25a44b (ENSKMAG00000002091)	PSMA4 (ENSKMAG00000002061)	rbpms2a (ENSKMAG00000002005)	cpeb1b (ENSKMAG00000001929) #22	ENSKMAG00000001876 ##23	csnk1g1 (ENSKMAG00000001782)	SNX1 (ENSKMAG00000001733)	neo1a (ENSKMAG00000001635)	bbs4 (ENSKMAG00000001543)	scamp2l (ENSKMAG00000001527)	myo9aa (ENSKMAG00000001383)	senp8 (ENSKMAG00000001341)	GRAMD2A (ENSKMAG00000001317)	znf609b (ENSKMAG00000001305)	trip4 (ENSKMAG00000001297)	chrna7a (ENSKMAG00000001245)	cln6a (ENSKMAG00000001207)	calml4a (ENSKMAG00000001164)	ADAMTS7 (ENSKMAG00000001137)
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637	ENSGT00940000157577.c.b	ENSGT00940000161080	ENSGT00910000144204.b	ENSGT00940000154641.C.b.h	ENSGT00390000015967	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637	ENSGT00940000157577.c.b	ENSGT00940000161080	ENSGT00910000144204.b	ENSGT00940000154641.C.b.h.h	ENSGT00390000015967	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Poecilia	ANCESTRAL SPECIES	4	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637	ENSGT00940000157577.c.b	ENSGT00940000161080	ENSGT00910000144204.b	ENSGT00940000154641.C.b.h.h	ENSGT00390000015967	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
NAME_6	ANCESTRAL SPECIES	52	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b.z	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637	ENSGT00940000157577.c.b.c	ENSGT00940000161080	ENSGT00910000144204.b	ENSGT00940000154641.C.b.h.h	ENSGT00390000015967	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b.e	ENSGT00390000008748.b.g.b.f	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a
Amazon molly	MODERN SPECIES	281	bcl2l10 (ENSPFOG00000023090)	gnb5b (ENSPFOG00000016895)	MYO5A (ENSPFOG00000016730)	ARPP19 (ENSPFOG00000016713)	atosa (ENSPFOG00000016694)	onecut1 (ENSPFOG00000016688)	UNC13C (ENSPFOG00000016363)	IGDCC4 (ENSPFOG00000016253)	SCAMP5 (ENSPFOG00000016234)	loxl1 (ENSPFOG00000016178)	insyn1 (ENSPFOG00000016163)	cd276 (ENSPFOG00000016159)	ubl7b (ENSPFOG00000016112)	PSMA4 (ENSPFOG00000016093)	rbpms2a (ENSPFOG00000016067)	cpeb1b (ENSPFOG00000016026) #22	rps17 (ENSPFOG00000016022) ##23	csnk1g1 (ENSPFOG00000015990)	SNX1 (ENSPFOG00000015913)	neo1a (ENSPFOG00000015615)	ENSPFOG00000015578	bbs4 (ENSPFOG00000015488)	scamp2l (ENSPFOG00000015391)	myo9aa (ENSPFOG00000014896)	senp8 (ENSPFOG00000020601)	GRAMD2A (ENSPFOG00000014828)	znf609b (ENSPFOG00000014788)	ENSPFOG00000023427	trip4 (ENSPFOG00000014732)	chrna7a (ENSPFOG00000014678)	cln6a (ENSPFOG00000014632)
Sailfin molly	MODERN SPECIES	1183															rbpms2a (ENSPLAG00000008831)	cpeb1b (ENSPLAG00000008878) #22	rps17 (ENSPLAG00000008908) ##23	csnk1g1 (ENSPLAG00000008963)	SNX1 (ENSPLAG00000008993)	neo1a (ENSPLAG00000009099)
Guppy	MODERN SPECIES	455	gnb5b (ENSPREG00000005407)	MYO5A (ENSPREG00000005450)	arpp19b (ENSPREG00000005617)	atosa (ENSPREG00000005636)	onecut1 (ENSPREG00000005657)	UNC13C (ENSPREG00000005691)	IGDCC4 (ENSPREG00000005820)	ENSPREG00000005834	loxl1 (ENSPREG00000005856)	insyn1 (ENSPREG00000005870)	cd276 (ENSPREG00000005885)	ubl7b (ENSPREG00000005901)	PSMA4 (ENSPREG00000005924)	ENSPREG00000005942	rbpms2a (ENSPREG00000005953)	cpeb1b (ENSPREG00000005999) #22	rps17 (ENSPREG00000006044) ##23	csnk1g1 (ENSPREG00000006082)	SNX1 (ENSPREG00000006158)	neo1a (ENSPREG00000006253)	bbs4 (ENSPREG00000006391)	scamp2l (ENSPREG00000006416)	myo9aa (ENSPREG00000006440)	senp8 (ENSPREG00000006505)	GRAMD2A (ENSPREG00000006516)	znf609b (ENSPREG00000006557)	trip4 (ENSPREG00000006576)	chrna7a (ENSPREG00000006599)	cln6a (ENSPREG00000006624)	calml4a (ENSPREG00000006653)	ADAMTS7 (ENSPREG00000006701)
Platyfish	MODERN SPECIES	18	ENSXMAG00000028337	ENSXMAG00000027425	rapsn (ENSXMAG00000003699)	UNC13C (ENSXMAG00000018090)	ENSXMAG00000027434	IGDCC4 (ENSXMAG00000018073)	SCAMP5 (ENSXMAG00000018054)	ENSXMAG00000024364	loxl1 (ENSXMAG00000025381)	ENSXMAG00000026985	insyn1 (ENSXMAG00000030045)	cd276 (ENSXMAG00000022292)	ubl7b (ENSXMAG00000011100)	PSMA4 (ENSXMAG00000011091)	rbpms2a (ENSXMAG00000001210)	cpeb1b (ENSXMAG00000027833) #22	rps17 (ENSXMAG00000023737) ##23	csnk1g1 (ENSXMAG00000010066)	SNX1 (ENSXMAG00000010130)	ENSXMAG00000028297	ENSXMAG00000022254	neo1a (ENSXMAG00000010174)	bbs4 (ENSXMAG00000010383)	scamp2l (ENSXMAG00000025884)	myo9aa (ENSXMAG00000010492)	ENSXMAG00000022373	ENSXMAG00000026992	ENSXMAG00000026358	senp8 (ENSXMAG00000019864)	GRAMD2A (ENSXMAG00000021086)	znf609b (ENSXMAG00000010639)
NAME_4	ANCESTRAL SPECIES	125	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a.v	ENSGT00940000155347.a.b	ENSGT00940000154555.e.a	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000155174.f	ENSGT00940000159637	ENSGT00940000157577.c.b	ENSGT00940000161080	ENSGT00910000144204.b	ENSGT00940000154641.C.b.h	ENSGT00390000015967	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Mummichog	MODERN SPECIES	407	ENSFHEG00000014173	ENSFHEG00000014189	MYO5A (ENSFHEG00000014329)	ARPP19 (ENSFHEG00000014342)	atosa (ENSFHEG00000014364)	onecut1 (ENSFHEG00000014377)	UNC13C (ENSFHEG00000000791)	IGDCC4 (ENSFHEG00000014483)	ENSFHEG00000014517	loxl1 (ENSFHEG00000014527)	insyn1 (ENSFHEG00000014534)	cd276 (ENSFHEG00000014574)	ubl7b (ENSFHEG00000014641)	PSMA4 (ENSFHEG00000014670)	rbpms2a (ENSFHEG00000014766)	cpeb1b (ENSFHEG00000014807) #22	rps17 (ENSFHEG00000014813) ##23	csnk1g1 (ENSFHEG00000014836)	SNX1 (ENSFHEG00000014859)	neo1a (ENSFHEG00000015103)	bbs4 (ENSFHEG00000015213)	scamp2l (ENSFHEG00000015228)	myo9aa (ENSFHEG00000015731)	senp8 (ENSFHEG00000015767)	znf609b (ENSFHEG00000015786)	trip4 (ENSFHEG00000015795)	chrna7a (ENSFHEG00000015802)	cln6a (ENSFHEG00000015820)	calml4a (ENSFHEG00000015825)	ADAMTS7 (ENSFHEG00000016455)	ENSFHEG00000016476
Sheepshead minnow	MODERN SPECIES	268	AIFM2 (ENSCVAG00000004348)	elovl6l (ENSCVAG00000004366)	ENSCVAG00000004414	nfkb2 (ENSCVAG00000004460)	ENSCVAG00000004467	glud1a (ENSCVAG00000004537)	shld2 (ENSCVAG00000004549)	ENSCVAG00000004697	ENSCVAG00000004712	ENSCVAG00000004758	ENSCVAG00000000676	dhrs13a.1 (ENSCVAG00000004791)	rps27a (ENSCVAG00000004811)	PSMA4 (ENSCVAG00000004839)	rbpms2a (ENSCVAG00000004878)	cpeb1b (ENSCVAG00000004909) #22	rps17 (ENSCVAG00000004936) ##23	csnk1g1 (ENSCVAG00000005001)	SNX1 (ENSCVAG00000005027)	neo1a (ENSCVAG00000005321)	bbs4 (ENSCVAG00000005366)	scamp2l (ENSCVAG00000000154)	myo9aa (ENSCVAG00000005493)	senp8 (ENSCVAG00000005509)	GRAMD2A (ENSCVAG00000005535)	znf609b (ENSCVAG00000005546)
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES																	ENSGT00940000155524.f.k #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00940000155524.f.k #22
Chinese medaka	MODERN SPECIES	2863																ENSOSIG00000002448 #22
Oryzias	ANCESTRAL SPECIES	13	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f.l #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240.b	ENSGT00940000157859.a.a	ENSGT00940000159819
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f.l #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240.b	ENSGT00940000157859.a.a	ENSGT00940000159819
Japanese Medaka HdrR	MODERN SPECIES	17	fshb (ENSORLG00000029237)	KCNA4 (ENSORLG00000001296)	ENSORLG00000023656	ENSORLG00000001305	ENSORLG00000023222	ENSORLG00000001345	ddb1 (ENSORLG00000001399)	tspan4a (ENSORLG00000027529)	ENSORLG00000028794	taldo1 (ENSORLG00000001435)	ENSORLG00000001460	CRABP1 (ENSORLG00000001467)	slc25a44b (ENSORLG00000001474)	PSMA4 (ENSORLG00000001486)	rbpms2a (ENSORLG00000027223)	cpeb1b (ENSORLG00000001508) #22	ENSORLG00000001513 ##23	csnk1g1 (ENSORLG00000001536)	ENSORLG00000001567	neo1a (ENSORLG00000001596)	ENSORLG00000030343	bbs4 (ENSORLG00000001619)	scamp2l (ENSORLG00000001630)	myo9aa (ENSORLG00000001677)	senp8 (ENSORLG00000001684)	GRAMD2A (ENSORLG00000001690)	znf609b (ENSORLG00000001700)	ENSORLG00000025875	trip4 (ENSORLG00000001710)	ENSORLG00000030549	cln6a (ENSORLG00000001720)
Chinese medaka	MODERN SPECIES	877												tspan4a (ENSOSIG00000019094)	taldo1 (ENSOSIG00000019098)	ENSOSIG00000019122	rbpms2a (ENSOSIG00000019148)	cpeb1b (ENSOSIG00000019165) #22	csnk1g1 (ENSOSIG00000019214)	neo1a (ENSOSIG00000019753)	bbs4 (ENSOSIG00000022472)	scamp2l (ENSOSIG00000022572)	myo9aa (ENSOSIG00000022625)	senp8 (ENSOSIG00000022848)	GRAMD2A (ENSOSIG00000022849)	znf609b (ENSOSIG00000022852)	trip4 (ENSOSIG00000022862)	chrna7a (ENSOSIG00000022872)	ENSOSIG00000022874	CLN6 (ENSOSIG00000022875)	calml4a (ENSOSIG00000022876)	ADAMTS7 (ENSOSIG00000022924)	ENSOSIG00000023050
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f.l #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240.b	ENSGT00940000157859.a.a	ENSGT00940000159819
Javanese ricefish	MODERN SPECIES	17	nr1h3 (ENSOJAG00000000605)	arl14ep (ENSOJAG00000000662)	ENSOJAG00000000666	KCNA4 (ENSOJAG00000000674)	cd151l (ENSOJAG00000000679)	TMEM138 (ENSOJAG00000000693)	ENSOJAG00000000704	ddb1 (ENSOJAG00000000740)	tspan4a (ENSOJAG00000000761)	taldo1 (ENSOJAG00000000771)	ENSOJAG00000000831	CRABP1 (ENSOJAG00000000921)	slc25a44b (ENSOJAG00000000928)	PSMA4 (ENSOJAG00000000937)	rbpms2a (ENSOJAG00000000964)	cpeb1b (ENSOJAG00000000997) #22	rps17 (ENSOJAG00000001040) ##23	csnk1g1 (ENSOJAG00000001122)	SNX1 (ENSOJAG00000001289)	neo1a (ENSOJAG00000002163)	ENSOJAG00000007639	bbs4 (ENSOJAG00000007709)	scamp2l (ENSOJAG00000008534)	myo9aa (ENSOJAG00000008577)	senp8 (ENSOJAG00000009834)	GRAMD2A (ENSOJAG00000009849)	znf609b (ENSOJAG00000009865)	trip4 (ENSOJAG00000009875)	chrna7a (ENSOJAG00000009888)	cln6a (ENSOJAG00000009909)	calml4a (ENSOJAG00000009929)
Indian medaka	MODERN SPECIES	26	nr1h3 (ENSOMEG00000005932)	arl14ep (ENSOMEG00000005952)	ENSOMEG00000005961	KCNA4 (ENSOMEG00000001043)	cd151l (ENSOMEG00000006004)	TMEM138 (ENSOMEG00000006020)	ENSOMEG00000006069	ddb1 (ENSOMEG00000006181)	tspan4a (ENSOMEG00000006248)	taldo1 (ENSOMEG00000006298)	ENSOMEG00000006358	ENSOMEG00000006392	slc25a44b (ENSOMEG00000006415)	PSMA4 (ENSOMEG00000006442)	rbpms2a (ENSOMEG00000006495)	cpeb1b (ENSOMEG00000006562) #22	rps17 (ENSOMEG00000006590) ##23	csnk1g1 (ENSOMEG00000006686)	SNX1 (ENSOMEG00000006738)	neo1a (ENSOMEG00000007057)	bbs4 (ENSOMEG00000007201)	scamp2l (ENSOMEG00000007243)	myo9aa (ENSOMEG00000007391)	senp8 (ENSOMEG00000007458)	GRAMD2A (ENSOMEG00000007509)	znf609b (ENSOMEG00000007568)	trip4 (ENSOMEG00000007655)	chrna7a (ENSOMEG00000007675)	cln6a (ENSOMEG00000007694)	calml4a (ENSOMEG00000007707)	ADAMTS7 (ENSOMEG00000007804)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Pomacentridae	ANCESTRAL SPECIES	15	ENSGT01050000244900.a.a.b.eb	ENSGT00940000163723.A.f.b	ENSGT00940000163723.A.e	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628.ab	ENSGT00940000155889.c	ENSGT00940000156684.o.b	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Pomacentridae_A	ANCESTRAL SPECIES	161				ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628.ab	ENSGT00940000155889.c	ENSGT00940000156684.o.b	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a
Amphiprion	ANCESTRAL SPECIES	88	ENSGT00940000155837.p	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000155568	ENSGT00390000017790	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00940000155405	ENSGT00940000165890	ENSGT00940000157369.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22
Orange clownfish	MODERN SPECIES		glceb (ENSAPEG00000001226)	arfgap2 (ENSAPEG00000001255)	pex16 (ENSAPEG00000001278)	cars1 (ENSAPEG00000001363)	ENSAPEG00000001429	ccnb2 (ENSAPEG00000001449)	crybgx (ENSAPEG00000001473)	lctla (ENSAPEG00000001509)	ENSAPEG00000001542	ENSAPEG00000001549	CRABP1 (ENSAPEG00000001621)	cmc1 (ENSAPEG00000001643)	slc25a44b (ENSAPEG00000001657)	PSMA4 (ENSAPEG00000001679)	rbpms2a (ENSAPEG00000001705)	cpeb1b (ENSAPEG00000001756) #22	polr3a (ENSAPEG00000001966)	ENSAPEG00000002071	itga11a (ENSAPEG00000002166)	CORO2B (ENSAPEG00000002500)	anp32a (ENSAPEG00000002578)	GRAMD2A (ENSAPEG00000002602)	senp8 (ENSAPEG00000002621)	myo9aa (ENSAPEG00000002665)	scamp2l (ENSAPEG00000002930)	bbs4 (ENSAPEG00000002979)	ENSAPEG00000003049	neo1a (ENSAPEG00000003066)	SNX1 (ENSAPEG00000003163)	csnk1g1 (ENSAPEG00000003190)	ENSAPEG00000003241 ##23
Clown anemonefish	MODERN SPECIES	3603		kif23 (ENSAOCG00000003685)	paqr5a (ENSAOCG00000003704)	glceb (ENSAOCG00000003715)	arfgap2 (ENSAOCG00000003742)	pex16 (ENSAOCG00000003768)	cars1 (ENSAOCG00000003813)	ccnb2 (ENSAOCG00000002382)	crybgx (ENSAOCG00000003835)	lctla (ENSAOCG00000003849)	ENSAOCG00000003876	CRABP1 (ENSAOCG00000003883)	slc25a44b (ENSAOCG00000003890)	PSMA4 (ENSAOCG00000003905)	rbpms2a (ENSAOCG00000000105)	cpeb1b (ENSAOCG00000000107) #22	polr3a (ENSAOCG00000003949)	QRFPR (ENSAOCG00000003958)
Spiny chromis	MODERN SPECIES	1372											ENSAPOG00000007725	CRABP1 (ENSAPOG00000007742)	slc25a44b (ENSAPOG00000007758)	PSMA4 (ENSAPOG00000007790)	rbpms2a (ENSAPOG00000007842)	cpeb1b (ENSAPOG00000007910) #22	rps17 (ENSAPOG00000007940) ##23	csnk1g1 (ENSAPOG00000007973)	ENSAPOG00000008005
Bicolor damselfish	MODERN SPECIES	133																cpeb1b (ENSSPAG00000021872) #22
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Burton s mouthbrooder	MODERN SPECIES	612																cpeb1b (ENSHBUG00000019765) #22	rps17 (ENSHBUG00000019784) ##23	csnk1g1 (ENSHBUG00000019884)	SNX1 (ENSHBUG00000019933)	neo1a (ENSHBUG00000020230)	bbs4 (ENSHBUG00000020303)	scamp2l (ENSHBUG00000020359)	myo9aa (ENSHBUG00000020911)	senp8 (ENSHBUG00000020951)	GRAMD2A (ENSHBUG00000020964)	znf609b (ENSHBUG00000021007)	trip4 (ENSHBUG00000021071)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
P. nyererei	MODERN SPECIES	432								ddb1 (ENSPNYG00000010482)	tspan4a (ENSPNYG00000010539)	taldo1 (ENSPNYG00000010584)	ENSPNYG00000010620	CRABP1 (ENSPNYG00000010686)	slc25a44b (ENSPNYG00000010703)	PSMA4 (ENSPNYG00000010725)	rbpms2a (ENSPNYG00000010761)	cpeb1b (ENSPNYG00000010791) #22	rps17 (ENSPNYG00000010824) ##23	csnk1g1 (ENSPNYG00000010850)	SNX1 (ENSPNYG00000010896)	neo1a (ENSPNYG00000010934)	bbs4 (ENSPNYG00000011026)	scamp2l (ENSPNYG00000011074)	myo9aa (ENSPNYG00000011152)	senp8 (ENSPNYG00000011263)	GRAMD2A (ENSPNYG00000011281)	znf609b (ENSPNYG00000011300)	trip4 (ENSPNYG00000011318)	chrna7a (ENSPNYG00000011350)	ENSPNYG00000011367	calml4a (ENSPNYG00000011378)	ADAMTS7 (ENSPNYG00000011414)
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Zebra mbuna	MODERN SPECIES	1091	nr1h3 (ENSMZEG00005013900)	arl14ep (ENSMZEG00005013884)	ENSMZEG00005013876	KCNA4 (ENSMZEG00005013871)	cd151l (ENSMZEG00005013865)	TMEM138 (ENSMZEG00005013862)	ENSMZEG00005013853	ddb1 (ENSMZEG00005013835)	tspan4a (ENSMZEG00005013806)	taldo1 (ENSMZEG00005013792)	ENSMZEG00005013751	CRABP1 (ENSMZEG00005013743)	slc25a44b (ENSMZEG00005013739)	PSMA4 (ENSMZEG00005013732)	rbpms2a (ENSMZEG00005013727)	cpeb1b (ENSMZEG00005013713) #22	rps17 (ENSMZEG00005013695) ##23	csnk1g1 (ENSMZEG00005013669)	SNX1 (ENSMZEG00005013653)	ENSMZEG00005013646	neo1a (ENSMZEG00005013613)	bbs4 (ENSMZEG00005013599)	scamp2l (ENSMZEG00005013584)	myo9aa (ENSMZEG00005013532)	senp8 (ENSMZEG00005013520)	GRAMD2A (ENSMZEG00005013502)	znf609b (ENSMZEG00005013485)	trip4 (ENSMZEG00005013450)	chrna7a (ENSMZEG00005013435)	ENSMZEG00005013431	ENSMZEG00005013424
Eastern happy	MODERN SPECIES		nr1h3 (ENSACLG00000012157)	arl14ep (ENSACLG00000012213)	ENSACLG00000012235	KCNA4 (ENSACLG00000012267)	cd151l (ENSACLG00000012285)	TMEM138 (ENSACLG00000012358)	ENSACLG00000012380	ddb1 (ENSACLG00000012401)	tspan4a (ENSACLG00000012587)	taldo1 (ENSACLG00000012634)	ENSACLG00000012642	CRABP1 (ENSACLG00000012721)	SLC25A44 (ENSACLG00000012741)	PSMA4 (ENSACLG00000012760)	rbpms2a (ENSACLG00000012769)	cpeb1b (ENSACLG00000012792) #22	rps17 (ENSACLG00000012805) ##23	csnk1g1 (ENSACLG00000012841)	SNX1 (ENSACLG00000012871)	neo1a (ENSACLG00000013494)	ENSACLG00000013543	bbs4 (ENSACLG00000013554)	scamp2l (ENSACLG00000013578)	myo9aa (ENSACLG00000013590)	senp8 (ENSACLG00000013721)	GRAMD2A (ENSACLG00000013732)	znf609b (ENSACLG00000013786)	trip4 (ENSACLG00000013819)	chrna7a (ENSACLG00000014046)	ENSACLG00000014136	calml4a (ENSACLG00000014149)
Lyretail cichlid	MODERN SPECIES	320	nr1h3 (ENSNBRG00000019379)	arl14ep (ENSNBRG00000019420)	ENSNBRG00000019462	KCNA4 (ENSNBRG00000019490)	cd151l (ENSNBRG00000019509)	TMEM138 (ENSNBRG00000019534)	ENSNBRG00000019554	ddb1 (ENSNBRG00000019581)	tspan4a (ENSNBRG00000019663)	taldo1 (ENSNBRG00000019728)	ENSNBRG00000019755	CRABP1 (ENSNBRG00000019816)	slc25a44b (ENSNBRG00000019911)	PSMA4 (ENSNBRG00000019927)	rbpms2a (ENSNBRG00000019943)	cpeb1b (ENSNBRG00000019992) #22	rps17 (ENSNBRG00000020091) ##23	csnk1g1 (ENSNBRG00000020106)	SNX1 (ENSNBRG00000020133)	neo1a (ENSNBRG00000020171)	ENSNBRG00000020232	ENSNBRG00000020240	ENSNBRG00000020249	ENSNBRG00000020266	bbs4 (ENSNBRG00000020285)	scamp2l (ENSNBRG00000020324)	myo9aa (ENSNBRG00000020401)	senp8 (ENSNBRG00000020619)	GRAMD2A (ENSNBRG00000020632)	znf609b (ENSNBRG00000020652)	trip4 (ENSNBRG00000020663)
Nile tilapia	MODERN SPECIES		nr1h3 (ENSONIG00000005828)	arl14ep (ENSONIG00000031018)	fshb (ENSONIG00000005826)	KCNA4 (ENSONIG00000005824)	cd151l (ENSONIG00000005822)	TMEM138 (ENSONIG00000005821)	ENSONIG00000005817	ddb1 (ENSONIG00000005804)	tspan4a (ENSONIG00000027294)	taldo1 (ENSONIG00000005800)	ENSONIG00000005791	CRABP1 (ENSONIG00000012848)	slc25a44b (ENSONIG00000005782)	PSMA4 (ENSONIG00000005774)	rbpms2a (ENSONIG00000005770)	cpeb1b (ENSONIG00000005763) #22	rps17 (ENSONIG00000034644) ##23	csnk1g1 (ENSONIG00000005753)	SNX1 (ENSONIG00000005744)	neo1a (ENSONIG00000005730)	bbs4 (ENSONIG00000005728)	scamp2l (ENSONIG00000005721)	myo9aa (ENSONIG00000005713)	senp8 (ENSONIG00000020449)	GRAMD2A (ENSONIG00000005711)	znf609b (ENSONIG00000005706)	trip4 (ENSONIG00000005703)	chrna7a (ENSONIG00000005698)	ENSONIG00000005697	calml4a (ENSONIG00000005694)	ADAMTS7 (ENSONIG00000005678)
Midas cichlid	MODERN SPECIES	826	DNAJC16 (ENSACIG00000014037)	b3galt6 (ENSACIG00000014017)	ENSACIG00000014002	tmem167b (ENSACIG00000013991)	MAPK14 (ENSACIG00000013956)	srpk1b (ENSACIG00000013885)	LHFPL5 (ENSACIG00000013873)	KIF21B (ENSACIG00000013821)	cpne5b (ENSACIG00000013782)	ENSACIG00000013772	ADORA1 (ENSACIG00000013762)	ENSACIG00000013749	slc25a44b (ENSACIG00000013733)	PSMA4 (ENSACIG00000013719)	rbpms2a (ENSACIG00000013696)	cpeb1b (ENSACIG00000013675) #22	rps17 (ENSACIG00000013662) ##23	csnk1g1 (ENSACIG00000013642)	SNX1 (ENSACIG00000013628)	neo1a (ENSACIG00000013586)	ENSACIG00000013579	ENSACIG00000013567	bbs4 (ENSACIG00000013543)	scamp2l (ENSACIG00000013490)
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Carangaria_A	ANCESTRAL SPECIES	19	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Seriola	ANCESTRAL SPECIES	30	ENSGT00950000182963.b.a.d	ENSGT00940000159407.q	ENSGT00940000157355.c	ENSGT00940000161181.c	ENSGT00940000159830	ENSGT00940000174889	ENSGT00950000183118.A.c.a	ENSGT00390000006347.a	ENSGT00940000174432	ENSGT00390000017790	ENSGT00940000155568.l	ENSGT00940000163723.A.e	ENSGT00940000163723.A.f.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT01030000238233	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a
Greater amberjack	MODERN SPECIES	3	ace2 (ENSSDUG00000002311)	ENSSDUG00000002294	NHS (ENSSDUG00000002264)	SCML2 (ENSSDUG00000002252)	cdkl5 (ENSSDUG00000002201)	RS1 (ENSSDUG00000002148)	ppef1 (ENSSDUG00000002125)	ENSSDUG00000002113	PHKA2 (ENSSDUG00000001094)	cars1 (ENSSDUG00000000977)	ENSSDUG00000000956	pex16 (ENSSDUG00000000913)	arfgap2 (ENSSDUG00000000883)	ENSSDUG00000000866	PSMA4 (ENSSDUG00000000861)	cpeb1b (ENSSDUG00000000721) #22	ENSSDUG00000000707	ENSSDUG00000000684 ##23	csnk1g1 (ENSSDUG00000000671)	SNX1 (ENSSDUG00000000660)	ENSSDUG00000000644	neo1a (ENSSDUG00000000565)	bbs4 (ENSSDUG00000000497)	scamp2l (ENSSDUG00000000467)	myo9aa (ENSSDUG00000000331)	senp8 (ENSSDUG00000000317)	GRAMD2A (ENSSDUG00000000304)	znf609b (ENSSDUG00000000271)	ENSSDUG00000000263	ENSSDUG00000000248	trip4 (ENSSDUG00000000225)
Yellowtail amberjack	MODERN SPECIES	2449	NHS (ENSSLDG00000023454)	SCML2 (ENSSLDG00000023438)	cdkl5 (ENSSLDG00000023318)	RS1 (ENSSLDG00000023297)	ppef1 (ENSSLDG00000023285)	ENSSLDG00000023272	PHKA2 (ENSSLDG00000023250)	cars1 (ENSSLDG00000023222)	ENSSLDG00000023213	pex16 (ENSSLDG00000023186)	arfgap2 (ENSSLDG00000023146)	ENSSLDG00000023130	ENSSLDG00000023111	PSMA4 (ENSSLDG00000023100)	rbpms2a (ENSSLDG00000023070)	cpeb1b (ENSSLDG00000023053) #22
Barramundi perch	MODERN SPECIES	96	nr1h3 (ENSLCAG00010018835)	arl14ep (ENSLCAG00010018898)	ENSLCAG00010018910	KCNA4 (ENSLCAG00010018923)	cd151l (ENSLCAG00010018926)	TMEM138 (ENSLCAG00010018931)	ENSLCAG00010018938	ddb1 (ENSLCAG00010018963)	tspan4a (ENSLCAG00010018993)	taldo1 (ENSLCAG00010019001)	ENSLCAG00010019044	CRABP1 (ENSLCAG00010019182)	slc25a44b (ENSLCAG00010019193)	PSMA4 (ENSLCAG00010019200)	rbpms2a (ENSLCAG00010019228)	cpeb1b (ENSLCAG00010019270) #22	rps17 (ENSLCAG00010019283) ##23	csnk1g1 (ENSLCAG00010019318)	SNX1 (ENSLCAG00010019376)	neo1a (ENSLCAG00010019676)	bbs4 (ENSLCAG00010020557)	scamp2l (ENSLCAG00010020626)	myo9aa (ENSLCAG00010020724)	senp8 (ENSLCAG00010021016)	GRAMD2A (ENSLCAG00010021019)	znf609b (ENSLCAG00010021031)	trip4 (ENSLCAG00010021041)	chrna7a (ENSLCAG00010021054)	ENSLCAG00010021064	calml4a (ENSLCAG00010021069)	ADAMTS7 (ENSLCAG00010021162)
Pleuronectoidei	ANCESTRAL SPECIES	39	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.a.a	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Turbot	MODERN SPECIES	17	nr1h3 (ENSSMAG00000009312)	ENSSMAG00000009335	FSHB (ENSSMAG00000033896)	ENSSMAG00000009384	ENSSMAG00000022320	ENSSMAG00000027613	ddb1 (ENSSMAG00000009495)	ENSSMAG00000009571	ENSSMAG00000029826	taldo1 (ENSSMAG00000009610)	ENSSMAG00000009638	ENSSMAG00000030955	slc25a44b (ENSSMAG00000009706)	ENSSMAG00000030370	rbpms2b (ENSSMAG00000033230)	cpeb1b (ENSSMAG00000009785) #22	ENSSMAG00000009813 ##23	ENSSMAG00000009827	ENSSMAG00000009901	ENSSMAG00000009934	ENSSMAG00000010162	scamp2l (ENSSMAG00000010233)	MYO9A (ENSSMAG00000010256)	senp8 (ENSSMAG00000010447)	GRAMD2A (ENSSMAG00000010480)	ENSSMAG00000010501	trip4 (ENSSMAG00000010539)	ENSSMAG00000010613	ENSSMAG00000010669	ENSSMAG00000010699	ENSSMAG00000010718
Tongue sole	MODERN SPECIES	22															rbpms2b (ENSCSEG00000008627)	cpeb1b (ENSCSEG00000008639) #22	ENSCSEG00000008659 ##23	rsph3 (ENSCSEG00000008664)	csnk1g1 (ENSCSEG00000008674)	SNX1 (ENSCSEG00000008730)	neo1a (ENSCSEG00000008750)	bbs4 (ENSCSEG00000008778)	scamp2l (ENSCSEG00000008811)	myo9aa (ENSCSEG00000008900)	senp8 (ENSCSEG00000008965)	GRAMD2A (ENSCSEG00000008973)	znf609b (ENSCSEG00000008996)	trip4 (ENSCSEG00000009015)	chrna7a (ENSCSEG00000009046)
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000014662	nr1h3 (ENSMAMG00000014609)	ENSMAMG00000014587	ENSMAMG00000014579	ENSMAMG00000014570	ENSMAMG00000014529	ENSMAMG00000014513	ENSMAMG00000014462	ddb1 (ENSMAMG00000014372)	ENSMAMG00000014336	taldo1 (ENSMAMG00000014307)	ENSMAMG00000014243	ENSMAMG00000014230	ENSMAMG00000027233	ENSMAMG00000014191	cpeb1b (ENSMAMG00000014086) #22	ENSMAMG00000014064 ##23	ENSMAMG00000014014	ENSMAMG00000013982	ENSMAMG00000013821	ENSMAMG00000013771	scamp2l (ENSMAMG00000013762)	MYO9A (ENSMAMG00000013463)	senp8 (ENSMAMG00000013429)	GRAMD2A (ENSMAMG00000013403)	ENSMAMG00000013386	trip4 (ENSMAMG00000013374)	ENSMAMG00000013354	ENSMAMG00000013333	ENSMAMG00000024970	ENSMAMG00000013295
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Climbing perch	MODERN SPECIES	16	nr1h3 (ENSATEG00000029349)	ENSATEG00000020759	ENSATEG00000020748	ENSATEG00000020731	ENSATEG00000020710	ENSATEG00000020697	ENSATEG00000020669	ddb1 (ENSATEG00000020571)	ENSATEG00000020509	taldo1 (ENSATEG00000020476)	ENSATEG00000020409	ENSATEG00000020395	slc25a44b (ENSATEG00000020384)	ENSATEG00000020360	ENSATEG00000020326	cpeb1b (ENSATEG00000020124) #22	ENSATEG00000020056 ##23	ENSATEG00000019987	ENSATEG00000019960	ENSATEG00000019842	ENSATEG00000019803	scamp2l (ENSATEG00000019790)	MYO9A (ENSATEG00000019656)	senp8 (ENSATEG00000019633)	GRAMD2A (ENSATEG00000019623)	ENSATEG00000019613	trip4 (ENSATEG00000019577)	ENSATEG00000019539	ENSATEG00000019520	ENSATEG00000019483	ENSATEG00000019217
Siamese fighting fish	MODERN SPECIES	14	arl14ep (ENSBSLG00000012440)	ENSBSLG00000012449	KCNA4 (ENSBSLG00000012475)	cd151l (ENSBSLG00000012480)	TMEM138 (ENSBSLG00000012493)	ENSBSLG00000012512	ddb1 (ENSBSLG00000012560)	tspan4a (ENSBSLG00000012718)	ENSBSLG00000012720	taldo1 (ENSBSLG00000012724)	ENSBSLG00000012740	CRABP1 (ENSBSLG00000012825)	slc25a44b (ENSBSLG00000012858)	PSMA4 (ENSBSLG00000012864)	rbpms2a (ENSBSLG00000012886)	cpeb1b (ENSBSLG00000012900) #22	rps17 (ENSBSLG00000013101) ##23	csnk1g1 (ENSBSLG00000013276)	SNX1 (ENSBSLG00000013542)	neo1a (ENSBSLG00000014798)	bbs4 (ENSBSLG00000017366)	scamp2l (ENSBSLG00000017852)	myo9aa (ENSBSLG00000017914)	senp8 (ENSBSLG00000018642)	znf609b (ENSBSLG00000018744)	trip4 (ENSBSLG00000018784)	chrna7a (ENSBSLG00000018854)	cln6a (ENSBSLG00000018967)	calml4a (ENSBSLG00000018987)	ADAMTS7 (ENSBSLG00000019017)	ENSBSLG00000019124
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00940000158689	ENSGT00940000155465.i	ENSGT01030000234518.B.a.b.a.a	ENSGT00940000159819	ENSGT00940000157859.a.a	ENSGT00400000022240	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.b #23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00390000013319	ENSGT00390000018587.e	ENSGT00940000157760.g.a
Tetraodon	MODERN SPECIES	20	anp32a (ENSTNIG00000009558)	CORO2B (ENSTNIG00000009559)	itga11a (ENSTNIG00000009560)	ENSTNIG00000009561	ADAMTS7 (ENSTNIG00000009562)	calml4a (ENSTNIG00000009563)	cln6a (ENSTNIG00000009564)	ddb1 (ENSTNIG00000009565)	tspan4a (ENSTNIG00000009566)	taldo1 (ENSTNIG00000009567)	ENSTNIG00000000445	ENSTNIG00000009568	CRABP1 (ENSTNIG00000009569)	ENSTNIG00000009570	PSMA4 (ENSTNIG00000009571)	cpeb1b (ENSTNIG00000009572) #22	ENSTNIG00000009573 #23	csnk1g1 (ENSTNIG00000009574)	SNX1 (ENSTNIG00000009575)	neo1a (ENSTNIG00000009576)	bbs4 (ENSTNIG00000009577)	scamp2l (ENSTNIG00000009578)	myo9aa (ENSTNIG00000009579)	senp8 (ENSTNIG00000001547)	GRAMD2A (ENSTNIG00000009580)	znf609b (ENSTNIG00000009581)	trip4 (ENSTNIG00000009582)	chrna7a (ENSTNIG00000009583)	ENSTNIG00000009584	TMEM138 (ENSTNIG00000009585)	cd151l (ENSTNIG00000009586)
Fugu	MODERN SPECIES	4	CORO2B (ENSTRUG00000016762)	itga11a (ENSTRUG00000016742)	ENSTRUG00000016739	ADAMTS7 (ENSTRUG00000016709)	calml4a (ENSTRUG00000016707)	cln6a (ENSTRUG00000016705)	ddb1 (ENSTRUG00000016682)	ENSTRUG00000026710	tspan4a (ENSTRUG00000016677)	taldo1 (ENSTRUG00000024977)	ENSTRUG00000016648	CRABP1 (ENSTRUG00000016640)	slc25a44b (ENSTRUG00000016638)	PSMA4 (ENSTRUG00000016631)	rbpms2a (ENSTRUG00000025375)	cpeb1b (ENSTRUG00000016618) #22	ENSTRUG00000022874 #23	csnk1g1 (ENSTRUG00000016599)	ENSTRUG00000025837	neo1a (ENSTRUG00000016549)	bbs4 (ENSTRUG00000016534)	scamp2l (ENSTRUG00000016531)	myo9aa (ENSTRUG00000016502)	senp8 (ENSTRUG00000016498)	ENSTRUG00000033283	znf609b (ENSTRUG00000016494)	trip4 (ENSTRUG00000016488)	ENSTRUG00000029628	TMEM138 (ENSTRUG00000031092)	cd151l (ENSTRUG00000016437)	KCNA4 (ENSTRUG00000016428)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Ballan wrasse	MODERN SPECIES	104									tspan4a (ENSLBEG00000017109)	taldo1 (ENSLBEG00000017130)	ENSLBEG00000017155	CRABP1 (ENSLBEG00000017202)	slc25a44b (ENSLBEG00000017220)	PSMA4 (ENSLBEG00000017255)	rbpms2b (ENSLBEG00000017287)	cpeb1b (ENSLBEG00000017314) #22	rps17 (ENSLBEG00000017369) ##23	csnk1g1 (ENSLBEG00000017396)	SNX1 (ENSLBEG00000017460)	neo1a (ENSLBEG00000017608)	bbs4 (ENSLBEG00000017881)	scamp2l (ENSLBEG00000017943)	myo9aa (ENSLBEG00000018083)	senp8 (ENSLBEG00000018189)	GRAMD2A (ENSLBEG00000018218)	znf609b (ENSLBEG00000018286)	trip4 (ENSLBEG00000018354)	chrna7a (ENSLBEG00000018486)	ENSLBEG00000018521	calml4a (ENSLBEG00000018565)	ADAMTS7 (ENSLBEG00000018586)
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000158152.b	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00940000157859.a.a	ENSGT00940000159819	ENSGT01030000234518.B.a.b.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000158152.b	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00940000157859.a.a	ENSGT00940000159819	ENSGT01030000234518.B.a.b.a.a
European seabass	MODERN SPECIES	18	bbox1 (ENSDLAG00005022902)	ENSDLAG00005022668	nr1h3 (ENSDLAG00005022607)	ENSDLAG00005035015	ENSDLAG00005022588	ENSDLAG00005031709	ENSDLAG00005022556	ENSDLAG00005022567	ENSDLAG00005022468	ENSDLAG00005022446	ENSDLAG00005022333	ENSDLAG00005022325	ENSDLAG00005022320	ENSDLAG00005022298	ENSDLAG00005022237	cpeb1b (ENSDLAG00005022173) #22	ENSDLAG00005022154 ##23	ENSDLAG00005022102	ENSDLAG00005022066	ENSDLAG00005020466	ENSDLAG00005020337	MYO9A (ENSDLAG00005018045)	ENSDLAG00005032544	GRAMD2A (ENSDLAG00005028629)	ENSDLAG00005017948	trip4 (ENSDLAG00005017928)	ENSDLAG00005017778	ENSDLAG00005033820	ENSDLAG00005026050	ENSDLAG00005017441	ENSDLAG00005017414
Large yellow croaker	MODERN SPECIES	480	nr1h3 (ENSLCRG00005014458)	arl14ep (ENSLCRG00005014456)	ENSLCRG00005014455	KCNA4 (ENSLCRG00005014454)	cd151l (ENSLCRG00005014453)	TMEM138 (ENSLCRG00005014452)	ENSLCRG00005014302	ddb1 (ENSLCRG00005014299)	tspan4a (ENSLCRG00005014297)	taldo1 (ENSLCRG00005014293)	CRABP1 (ENSLCRG00005014292)	ENSLCRG00005014157	slc25a44b (ENSLCRG00005014143)	PSMA4 (ENSLCRG00005014142)	rbpms2a (ENSLCRG00005014003)	cpeb1b (ENSLCRG00005014000) #22	rps17 (ENSLCRG00005013997) ##23	csnk1g1 (ENSLCRG00005013987)	SNX1 (ENSLCRG00005013937)	neo1a (ENSLCRG00005013587)	bbs4 (ENSLCRG00005013558)	scamp2l (ENSLCRG00005013552)	myo9aa (ENSLCRG00005010623)	senp8 (ENSLCRG00005010590)	GRAMD2A (ENSLCRG00005010585)	znf609b (ENSLCRG00005010583)	trip4 (ENSLCRG00005010579)	ENSLCRG00005010575	chrna7a (ENSLCRG00005010149)	ENSLCRG00005010145	calml4a (ENSLCRG00005010143)
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010002250	cd151l (ENSSAUG00010002252)	TMEM138 (ENSSAUG00010002256)	ENSSAUG00010002272	ddb1 (ENSSAUG00010002303)	ENSSAUG00010002320	tspan4a (ENSSAUG00010002326)	taldo1 (ENSSAUG00010002336)	ENSSAUG00010002341	ENSSAUG00010002347	ENSSAUG00010002374	CRABP1 (ENSSAUG00010003221)	slc25a44b (ENSSAUG00010003225)	PSMA4 (ENSSAUG00010003232)	rbpms2a (ENSSAUG00010003298)	cpeb1b (ENSSAUG00010003465) #22	rps17 (ENSSAUG00010004475) ##23	csnk1g1 (ENSSAUG00010004501)	SNX1 (ENSSAUG00010005149)	neo1a (ENSSAUG00010005315)	bbs4 (ENSSAUG00010006344)	scamp2l (ENSSAUG00010006762)	myo9aa (ENSSAUG00010006825)	senp8 (ENSSAUG00010009683)	GRAMD2A (ENSSAUG00010009685)	znf609b (ENSSAUG00010009690)	trip4 (ENSSAUG00010009692)	chrna7a (ENSSAUG00010009694)	ENSSAUG00010009695	calml4a (ENSSAUG00010009697)	ADAMTS7 (ENSSAUG00010009711)
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000166875.b	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00940000158481.d	ENSGT00940000155405.u	ENSGT00940000156431	ENSGT00940000164386	ENSGT00390000006922	ENSGT00940000156938.e.e	ENSGT00940000155010.a	ENSGT00940000156563.a	ENSGT00940000166375	ENSGT00940000163421.a.d.a	ENSGT00390000004417.b	ENSGT00390000004215.a.b.b.c.a.b.a.c	ENSGT00940000160309.e.b	ENSGT00940000158707.a.a	ENSGT00390000001802
Lumpfish	MODERN SPECIES	18	arl14ep (ENSCLMG00005000867)	ENSCLMG00005000868	KCNA4 (ENSCLMG00005000869)	cd151l (ENSCLMG00005000870)	TMEM138 (ENSCLMG00005000871)	ENSCLMG00005000872	ENSCLMG00005000873	ddb1 (ENSCLMG00005000875)	tspan4a (ENSCLMG00005000879)	taldo1 (ENSCLMG00005000880)	ENSCLMG00005000885	CRABP1 (ENSCLMG00005000895)	slc25a44b (ENSCLMG00005000896)	PSMA4 (ENSCLMG00005000897)	rbpms2a (ENSCLMG00005000906)	cpeb1b (ENSCLMG00005000928) #22	cd82a (ENSCLMG00005000937)	ccnb2 (ENSCLMG00005000940)	kmt5b (ENSCLMG00005000945)	pole3 (ENSCLMG00005000948)	rpl12 (ENSCLMG00005000956)	ENSCLMG00005000964	ENSCLMG00005000965	GABARAPL2 (ENSCLMG00005000967)	NQO2 (ENSCLMG00005000970)	ENSCLMG00005000972	zgc:194679 (ENSCLMG00005000975)	MATCAP1 (ENSCLMG00005000977)	csnk2a2a (ENSCLMG00005000988)	ENSCLMG00005001106	ZNF319 (ENSCLMG00005001108)
Stickleback	MODERN SPECIES	1	SERINC4 (ENSGACG00000017426)	ENSGACG00000017432	ENSGACG00000017436 #34	iqgap1 (ENSGACG00000017438) #33	cdkn2aip (ENSGACG00000017445)	tubgcp4 (ENSGACG00000017448)	ENSGACG00000017453	ENSGACG00000017456	MAP1A (ENSGACG00000017459)	ENSGACG00000017464	ENSGACG00000017465	ENSGACG00000017468	slc25a44b (ENSGACG00000017469)	PSMA4 (ENSGACG00000017471)	rbpms2b (ENSGACG00000017472)	cpeb1b (ENSGACG00000017476) #22	cd82a (ENSGACG00000017479)	ccnb2 (ENSGACG00000017487)	kmt5b (ENSGACG00000017488)	pole3 (ENSGACG00000017490)	rpl12 (ENSGACG00000017491)	ENSGACG00000017498	GABARAPL2 (ENSGACG00000017500)	ENSGACG00000017506	trpm1a (ENSGACG00000017508)	ENSGACG00000017511	tppp3 (ENSGACG00000017512)	ENSGACG00000017513	hsd11b2 (ENSGACG00000017514)	CIB2 (ENSGACG00000017516)	idh3a (ENSGACG00000017520)
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00940000159068	ENSGT00940000156586	ENSGT00940000172097	ENSGT00940000162248	ENSGT00940000157760.g.a	ENSGT00390000018587.e	ENSGT00390000013319	ENSGT00950000183151.a.a.a	ENSGT00940000160434	ENSGT00390000017361	ENSGT00940000155491.d	ENSGT00940000159422.a.b	ENSGT00940000155399.a	ENSGT00550000074827.gb	ENSGT00940000158086.b	ENSGT00940000155524.f #22	ENSGT00390000006548.a.a ##23	ENSGT00940000155628	ENSGT00940000155889.c	ENSGT00940000156684	ENSGT00940000158166	ENSGT00940000156476.g	ENSGT00940000154905.i.a	ENSGT00390000014038	ENSGT00940000159572.a.a	ENSGT00390000008748.b.g.b	ENSGT00390000005300	ENSGT00940000154617.B.c	ENSGT00400000022240	ENSGT00940000157859.a.a	ENSGT00940000159819
Channel bull blenny	MODERN SPECIES	17	nr1h3 (ENSCGOG00000002270)	arl14ep (ENSCGOG00000002414)	ENSCGOG00000002416	KCNA4 (ENSCGOG00000002417)	cd151l (ENSCGOG00000002422)	TMEM138 (ENSCGOG00000002451)	ENSCGOG00000002455	ddb1 (ENSCGOG00000002490)	tspan4a (ENSCGOG00000003452)	taldo1 (ENSCGOG00000003458)	ENSCGOG00000003528	CRABP1 (ENSCGOG00000004610)	slc25a44b (ENSCGOG00000004621)	PSMA4 (ENSCGOG00000004630)	rbpms2a (ENSCGOG00000004746)	cpeb1b (ENSCGOG00000004857) #22	zgc:114188 (ENSCGOG00000005225) ##23	ENSCGOG00000005245 ##23	csnk1g1 (ENSCGOG00000005272)	neo1a (ENSCGOG00000005336)	bbs4 (ENSCGOG00000009479)	scamp2l (ENSCGOG00000009940)	myo9aa (ENSCGOG00000009981)	senp8 (ENSCGOG00000011307)	GRAMD2A (ENSCGOG00000011309)	znf609b (ENSCGOG00000011314)	trip4 (ENSCGOG00000011319)	chrna7a (ENSCGOG00000011361)	cln6a (ENSCGOG00000002629)	calml4a (ENSCGOG00000002644)	ADAMTS7 (ENSCGOG00000002764)
Pike perch	MODERN SPECIES	82	ENSSLUG00000017272	arl14ep (ENSSLUG00000017268)	ENSSLUG00000017241	KCNA4 (ENSSLUG00000017233)	cd151l (ENSSLUG00000017224)	TMEM138 (ENSSLUG00000017214)	ENSSLUG00000017181	ddb1 (ENSSLUG00000017145)	tspan4a (ENSSLUG00000017124)	taldo1 (ENSSLUG00000017109)	ENSSLUG00000016710	CRABP1 (ENSSLUG00000016666)	slc25a44b (ENSSLUG00000016660)	PSMA4 (ENSSLUG00000016654)	rbpms2a (ENSSLUG00000016597)	cpeb1b (ENSSLUG00000016040) #22	rps17 (ENSSLUG00000015984) ##23	ENSSLUG00000015963	csnk1g1 (ENSSLUG00000015037)	SNX1 (ENSSLUG00000014792)	neo1a (ENSSLUG00000014039)	bbs4 (ENSSLUG00000013878)	scamp2l (ENSSLUG00000013853)	myo9aa (ENSSLUG00000013196)	senp8 (ENSSLUG00000013154)	GRAMD2A (ENSSLUG00000013149)	znf609b (ENSSLUG00000013144)	trip4 (ENSSLUG00000013123)	chrna7a (ENSSLUG00000013111)	ENSSLUG00000013104	calml4a (ENSSLUG00000013088)
Osteoglossiformes	ANCESTRAL SPECIES	168	ENSGT00940000154091.a.b	ENSGT00940000160162.a	ENSGT00510000047494	ENSGT00940000157447	ENSGT00940000155491.c.k	ENSGT00940000159422.a.a	ENSGT00940000153533.a	ENSGT00940000155399	ENSGT00940000157796	ENSGT00550000074827	ENSGT00940000157725	ENSGT00940000158086.a.b	ENSGT00940000156817.c #21	ENSGT00940000158086.a.a	ENSGT00940000156817.d #21	ENSGT00940000155524 #22	ENSGT00950000182940.a	ENSGT00940000155889.d	ENSGT00390000001280.a	ENSGT00940000158007.a	ENSGT00510000048252	ENSGT00940000155628.fb	ENSGT00940000159572.a.b	ENSGT00940000154905.i.b	ENSGT00390000012715.e	ENSGT00940000176053	ENSGT00390000016075	ENSGT00940000156476.h	ENSGT00940000156684.cb.b.b	ENSGT00390000017953.A	ENSGT00940000158166
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015022352	hmg20a (ENSSFOG00015022310)	LINGO1 (ENSSFOG00015024664)	CSPG4 (ENSSFOG00015022290)	snx33 (ENSSFOG00015026549)	snupn (ENSSFOG00015022264)	PTPN9 (ENSSFOG00015022236)	sin3aa (ENSSFOG00015022162)	CRABP1 (ENSSFOG00015029622)	skic8 (ENSSFOG00015022123)	slc25a44b (ENSSFOG00015022113)	IREB2 (ENSSFOG00015022085)	ENSSFOG00015031040	RBPMS2 (ENSSFOG00015022055)	AP3B2 (ENSSFOG00015022019) #21	cpeb1b (ENSSFOG00015021985) #22	ENSSFOG00015021969	snx1a (ENSSFOG00015032099)	ENSSFOG00015021957	snx22 (ENSSFOG00015021932)	ppib (ENSSFOG00015021922)	PCLAF (ENSSFOG00015021909)	csnk1g1 (ENSSFOG00015021840)	ENSSFOG00015021799	myo9ab (ENSSFOG00015021528)	ENSSFOG00015025698	ENSSFOG00015031413	ENSSFOG00015021447	mpi (ENSSFOG00015021429)	scamp2 (ENSSFOG00015031918)	NEO1 (ENSSFOG00015021378)
Asian bonytongue	MODERN SPECIES	2	ENSSFOG00015010926	ENSSFOG00015010953	FCSK (ENSSFOG00015010882)	trpm5 (ENSSFOG00015010837)	cdkn1ca (ENSSFOG00015024372)	ENSSFOG00015010788	ENSSFOG00015027106	lingo1b (ENSSFOG00015010766)	snx33 (ENSSFOG00015010748)	sin3aa (ENSSFOG00015010655)	crabp1a (ENSSFOG00015010613)	psma4 (ENSSFOG00015010581)	OAZ2 (ENSSFOG00015010507)	rbpms2b (ENSSFOG00015010476)	AP3B2 (ENSSFOG00015010369) #21	CPEB1 (ENSSFOG00015010287) #22	ENSSFOG00015010247	ppib (ENSSFOG00015010226)	CSNK1G1 (ENSSFOG00015010155)	RPS17 (ENSSFOG00015027143) ##23	neo1a (ENSSFOG00015010033)	SCAMP2 (ENSSFOG00015009946)	MYO9A (ENSSFOG00015009782)	senp8 (ENSSFOG00015009743)	GRAMD2A (ENSSFOG00015032291)	ZNF609 (ENSSFOG00015009707)	chrna7a (ENSSFOG00015022934)	ENSSFOG00015030295	ENSSFOG00015026980	ADAMTS7 (ENSSFOG00015009600)	ENSSFOG00015027576
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	327					trip4 (ENSPKIG00000022978)	znf609b (ENSPKIG00000023012)	ENSPKIG00000023044	MICAL2 (ENSPKIG00000023089)	NEO1 (ENSPKIG00000023118)	ENSPKIG00000023147	adpgk (ENSPKIG00000023154)	bbs4 (ENSPKIG00000023177)	zgc:114188 (ENSPKIG00000023193) ##23	RASSF10 (ENSPKIG00000023218)	AP3B2 (ENSPKIG00000023240) #21	cpeb1b (ENSPKIG00000023302) #22	snx1a (ENSPKIG00000023348)	snx22 (ENSPKIG00000023378)	ppib (ENSPKIG00000023392)	ENSPKIG00000023409	csnk1g1 (ENSPKIG00000023430)	ENSPKIG00000023467	myo9ab (ENSPKIG00000023503)	ENSPKIG00000023552	mpi (ENSPKIG00000023570)	scamp2 (ENSPKIG00000023594)	ANO5 (ENSPKIG00000023635)	ENSPKIG00000023671	ENSPKIG00000023689	ENSPKIG00000023717
P. kingsleyae	MODERN SPECIES	12	ENSPKIG00000013285	ENSPKIG00000013261	FCSK (ENSPKIG00000013172)	trpm5 (ENSPKIG00000012994)	cdkn1ca (ENSPKIG00000012930)	kcnq1.1 (ENSPKIG00000012902)	ENSPKIG00000012888	lingo1b (ENSPKIG00000012885)	snx33 (ENSPKIG00000012874)	sin3aa (ENSPKIG00000012808)	CRABP1 (ENSPKIG00000012775)	psma4 (ENSPKIG00000012736)	OAZ2 (ENSPKIG00000012684)	rbpms2b (ENSPKIG00000012634)	AP3B2 (ENSPKIG00000012434) #21	CPEB1 (ENSPKIG00000012302) #22	SNX1 (ENSPKIG00000012253)	ENSPKIG00000012239	ppib (ENSPKIG00000012221)	ENSPKIG00000012094	NEO1 (ENSPKIG00000012006)
Spotted gar	MODERN SPECIES	669	furina (ENSLOCG00000015082) #36	ENSLOCG00000015077	ckmt1 (ENSLOCG00000015070)	ENSLOCG00000015068	snupn (ENSLOCG00000015064)	PTPN9 (ENSLOCG00000015058)	sin3aa (ENSLOCG00000015051)	crabp1b (ENSLOCG00000015050)	skic8 (ENSLOCG00000015047)	slc25a44b (ENSLOCG00000015045)	IREB2 (ENSLOCG00000015029)	psma4 (ENSLOCG00000015026)	oaz2b (ENSLOCG00000015021)	rbpms2b (ENSLOCG00000015018)	AP3B2 (ENSLOCG00000015010) #21	cpeb1b (ENSLOCG00000015009) #22	ENSLOCG00000015007	snx1a (ENSLOCG00000015004)	snx22 (ENSLOCG00000015001)	ppib (ENSLOCG00000015000)	csnk1g1 (ENSLOCG00000014997)	zgc:114188 (ENSLOCG00000014995) ##23	ENSLOCG00000014994	trip4 (ENSLOCG00000014993)	znf609a (ENSLOCG00000014990)	GRAMD2A (ENSLOCG00000014988)	senp8 (ENSLOCG00000017960)	myo9aa (ENSLOCG00000014977)	nr2e3 (ENSLOCG00000014973)	hexa (ENSLOCG00000014972)	arih1 (ENSLOCG00000014970)
Reedfish	MODERN SPECIES	8	ENSECRG00000021583	mpi (ENSECRG00000021591)	scamp2l (ENSECRG00000021611)	neo1a (ENSECRG00000021637)	ENSECRG00000021688	roraa (ENSECRG00000021717)	ENSECRG00000021762	ENSECRG00000021778	OTUD7A (ENSECRG00000021812)	klf13 (ENSECRG00000021871)	rbpms2b (ENSECRG00000021907)	psma4 (ENSECRG00000021960)	skic8 (ENSECRG00000021976)	crabp1b (ENSECRG00000021993)	ENSECRG00000022005 #21	cpeb1b (ENSECRG00000022018) #22	ENSECRG00000022030	ENSECRG00000022044	sin3aa (ENSECRG00000022057)	ubl7a (ENSECRG00000022069)	CHRNA3 (ENSECRG00000022109)	cilp (ENSECRG00000022196)	parp16 (ENSECRG00000022209)	IGDCC3 (ENSECRG00000022218)	IGDCC4 (ENSECRG00000022233)	hacd3 (ENSECRG00000022248)	ints14 (ENSECRG00000016954)	SLC24A1 (ENSECRG00000016985)	dennd4a (ENSECRG00000017079)	ENSECRG00000017309	ENSECRG00000017340
Elephant shark	MODERN SPECIES	1688								ENSCMIG00000005767	ENSCMIG00000005763	sin3aa (ENSCMIG00000005707)	ENSCMIG00000005677	snx27b (ENSCMIG00000005672)	ENSCMIG00000005669	ENSCMIG00000005667	AP3B2 (ENSCMIG00000005603) #21	cpeb1b (ENSCMIG00000005553) #22	ENSCMIG00000005540	ENSCMIG00000005533	ENSCMIG00000005528	zgc:114188 (ENSCMIG00000005517) #23	ENSCMIG00000005493	ENSCMIG00000005480	ch25hl1.1 (ENSCMIG00000005474)	ENSCMIG00000005470	ENSCMIG00000005466	kti12 (ENSCMIG00000005461)	ENSCMIG00000005456	sec11a (ENSCMIG00000005414) #28	ENSCMIG00000005401	ENSCMIG00000005395	ENSCMIG00000005391
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155524.k #22
Hagfish	MODERN SPECIES	1056	ENSEBUG00000003772	ENSEBUG00000010595	ENSEBUG00000006775	ENSEBUG00000006690	ENSEBUG00000009963	ENSEBUG00000006832	ENSEBUG00000016240	ENSEBUG00000001589	ENSEBUG00000011526	ENSEBUG00000002901	ENSEBUG00000002932	ENSEBUG00000010086	acaa2 (ENSEBUG00000016427)	AP3B2 (ENSEBUG00000003844) #21	ENSEBUG00000014418	ENSEBUG00000002964 #22	ENSEBUG00000004145	ENSEBUG00000013040	ENSEBUG00000009348	ENSEBUG00000000762
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES	977																ENSGT00940000155524.l.a #22	ENSGT00950000182940.a
Lamprey	MODERN SPECIES	2912																cpeb1b (ENSPMAG00000008870) #22	ENSPMAG00000008873
Hagfish	MODERN SPECIES	198		ENSEBUG00000010949	ENSEBUG00000001368	ETF1 (ENSEBUG00000012821)	ENSEBUG00000014212	ENSEBUG00000005313	ENSEBUG00000007016	psmb1 (ENSEBUG00000003225)	ENSEBUG00000007055	ENSEBUG00000009406	ENSEBUG00000005214	SMG5 (ENSEBUG00000003739)	ENSEBUG00000006955	ENSEBUG00000006477	otpa (ENSEBUG00000011126)	ENSEBUG00000001274 #22	ENSEBUG00000012777 #24	GNA11 (ENSEBUG00000010345)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000155524.l.b #22
Hagfish	DUPLICATION
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	762	ENSEBUG00000014850	ENSEBUG00000015086	ENSEBUG00000010121	ENSEBUG00000014278	ENSEBUG00000006134	ENSEBUG00000006155	ENSEBUG00000004388	ENSEBUG00000006841	ENSEBUG00000013138	ENSEBUG00000016156	ENSEBUG00000012690	ENSEBUG00000014190	ENSEBUG00000012206	ENSEBUG00000005815	ENSEBUG00000016126	ENSEBUG00000015381 #22	ENSEBUG00000010691 #24	peds1 (ENSEBUG00000011683)	ENSEBUG00000001770	rpl13 (ENSEBUG00000000730)	ENSEBUG00000016827	ciao2b (ENSEBUG00000007412)	ap3m2 (ENSEBUG00000015317)	sys1 (ENSEBUG00000015028)	ENSEBUG00000011708	ENSEBUG00000002986	ENSEBUG00000012363	cox4i1 (ENSEBUG00000014808)	ENSEBUG00000015481	ENSEBUG00000010192	pcif1 (ENSEBUG00000009463)
Hagfish	MODERN SPECIES	655														ENSEBUG00000005265	ENSEBUG00000013939	ENSEBUG00000008914 #22
Hagfish	MODERN SPECIES	855																ENSEBUG00000016692 #22
Ciona	ANCESTRAL SPECIES	972																ENSGT00940000155524 #22	ENSGT00390000009753
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000012738	ENSCING00000021027	ENSCING00000010791	ENSCING00000023091	ENSCING00000022975	ENSCING00000019819	ENSCING00000012734	ENSCING00000022620	ENSCING00000012732	ENSCING00000023900	ENSCING00000021434	ENSCING00000012733	ENSCING00000022789	ENSCING00000019092	ENSCING00000024989	ENSCING00000001954 #22	ENSCING00000012725	ENSCING00000001956	ENSCING00000019559	ENSCING00000022285	ENSCING00000021021	ENSCING00000021110	ENSCING00000018374	ENSCING00000019517	ENSCING00000019229	ENSCING00000001513	ENSCING00000001926	ENSCING00000012717	ENSCING00000022619	ENSCING00000001928	ENSCING00000001929
Ciona savignyi	MODERN SPECIES	2	ENSCSAVG00000002756	ENSCSAVG00000002741	ENSCSAVG00000002732	ENSCSAVG00000002731	ENSCSAVG00000002728	ENSCSAVG00000002724	ENSCSAVG00000002703	ENSCSAVG00000002701	ENSCSAVG00000002698	ENSCSAVG00000002681	ENSCSAVG00000002678	ENSCSAVG00000002675	ENSCSAVG00000002664	ENSCSAVG00000002660	ENSCSAVG00000002651	ENSCSAVG00000002633 #22	ENSCSAVG00000002618	ENSCSAVG00000002617	ENSCSAVG00000002613	ENSCSAVG00000002606	ENSCSAVG00000002605	ENSCSAVG00000002602	ENSCSAVG00000002592	ENSCSAVG00000002591	ENSCSAVG00000002576	ENSCSAVG00000002570	ENSCSAVG00000002565	ENSCSAVG00000002144	ENSCSAVG00000002142	ENSCSAVG00000001705	ENSCSAVG00000001689
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000155524 #22
Caenorhabditis elegans	MODERN SPECIES		F33D11.6 (WBGene00018003)	col-54 (WBGene00000631)	ceh-12 (WBGene00000436)	F33D11.16 (WBGene00269382)	twk-47 (WBGene00018002)	obr-4 (WBGene00016331)	C32F10.8 (WBGene00016333)	nhr-2 (WBGene00003601)	hmg-3 (WBGene00001973)	C32F10.4 (WBGene00016332)	lin-35 (WBGene00003020)	vps-51 (WBGene00015176)	srz-4 (WBGene00015175)	mtk-1 (WBGene00003472)	glh-3 (WBGene00001600)	cpb-3 (WBGene00000772) #22	rnt-1 (WBGene00004393)	hil-5 (WBGene00001856)	lron-8 (WBGene00020693)	dhhc-11 (WBGene00020694)	oxy-5 (WBGene00045483)	ccpp-1 (WBGene00018995)	che-14 (WBGene00000493)	rad-8 (WBGene00044305)	rpt-5 (WBGene00004505)	F56H1.10 (WBGene00206363)	C04F1.1 (WBGene00015442)	lim-7 (WBGene00002989)	pamn-1 (WBGene00020556)	npp-7 (WBGene00003793)	unc-40 (WBGene00006776)
Fruitfly	MODERN SPECIES	19	CG17380 (FBgn0039077)	CG31515 (FBgn0051515)	CG4393 (FBgn0039075)	CG42828 (FBgn0262010)	CG42827 (FBgn0262009)	CG4408 (FBgn0039073)	RpS3 (FBgn0002622)	Sec13 (FBgn0024509)	ATPsynCF6 (FBgn0016119)	PolE1 (FBgn0264326)	pnt (FBgn0003118)	bb8 (FBgn0039071)	wam (FBgn0039070)	CG6763 (FBgn0039069)	Cdc16 (FBgn0025781)	orb (FBgn0004882) #22	Pex11c (FBgn0039068)	wda (FBgn0039067)	EloA (FBgn0039066)	Rad60 (FBgn0039065)	CG4467 (FBgn0039064)	fzo (FBgn0011596)	cnc (FBgn0262975)	CG46310 (FBgn0284226)	Irk1 (FBgn0265042)	CG13829 (FBgn0039059)	VhaAC39-2 (FBgn0039058)	unk (FBgn0004395)	hh (FBgn0004644)	CG31457 (FBgn0051457)	CG31365 (FBgn0051365)