Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00410000025802.h ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##10	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Equus	ANCESTRAL SPECIES	52	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00410000025802.g.b.n #8	ENSGT00410000025802.g.b.m #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Horse	MODERN SPECIES	480	ENSECAG00000033189 #7	ENSECAG00000029643 #8	ENSECAG00000056189 #9	ENSECAG00000031652 #10	GAB3 (ENSECAG00000023348) #11	DKC1 (ENSECAG00000023524) #12	MPP1 (ENSECAG00000009595) #13	F8 (ENSECAG00000015044) #14	ENSECAG00000033114 #15	ENSECAG00000054244 #16	ENSECAG00000029708 #17	ENSECAG00000058802 #18	FUNDC2 (ENSECAG00000026822) #19	MTCP1 (ENSECAG00000043072) #20	BRCC3 (ENSECAG00000021441) #21	VBP1 (ENSECAG00000001468) #22	ENSECAG00000047761 #23	ENSECAG00000053801 #24	RAB39B (ENSECAG00000007380) #25	CLIC2 (ENSECAG00000008024) #26	TMLHE (ENSECAG00000012334) #27	SPRY3 (ENSECAG00000058224) #28	ENSECAG00000027923 #29	ENSECAG00000030972 #30	VAMP7 (ENSECAG00000014117) #31
Donkey	MODERN SPECIES	36	ENSEASG00005027434 #17	ENSEASG00005031374 #16	ENSEASG00005028284	ENSEASG00005034297 #10	ENSEASG00005032503 #10	ENSEASG00005033034 #11	ENSEASG00005007484 #12	MPP1 (ENSEASG00005007482) #13	SMIM9 (ENSEASG00005025831)	ENSEASG00005033689 #14	ENSEASG00005004499 #14	ENSEASG00005034088 #19	ENSEASG00005036735	MTCP1 (ENSEASG00005004486) #20	BRCC3 (ENSEASG00005004482) #21	VBP1 (ENSEASG00005035328) #22	RAB39B (ENSEASG00005034031) #25	ENSEASG00005024036	ENSEASG00005001752 #16	ENSEASG00005001750 #27	ENSEASG00005038101 #28	ENSEASG00005011059 #30	ENSEASG00005011061 #31	ENSEASG00005036960	ENSEASG00005035090	TCEAL1 (ENSEASG00005025524)	MORF4L2 (ENSEASG00005002526)	ENSEASG00005002530	TMEM31 (ENSEASG00005002551)	PLP1 (ENSEASG00005002561)	ENSEASG00005029160
Chiroptera	ANCESTRAL SPECIES	48	ENSGT01030000238159	ENSGT00410000025802.h ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.c.a ##21	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Megabat	MODERN SPECIES	2670													CMC4 (ENSPVAG00000016848)	MTCP1 (ENSPVAG00000016849) #20	BRCC3 (ENSPVAG00000016850) ##21	VBP1 (ENSPVAG00000016852) #22	RAB39B (ENSPVAG00000016854) #25
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00530000063808.a	ENSGT00410000025802.g.b #10	ENSGT01050000244815.B.a.a	ENSGT01030000238159	ENSGT00410000025802.h ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000160294 #14	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020 #16	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000162988	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.a.a	ENSGT00950000182925.D.a.b.b
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010002963 #10	ENSRFEG00010002921 #7	ENSRFEG00010002889	ENSRFEG00010002860 ##10	GAB3 (ENSRFEG00010002752) #11	DKC1 (ENSRFEG00010002621) #12	MPP1 (ENSRFEG00010002502) #13	SMIM9 (ENSRFEG00010002415)	ENSRFEG00010002379 #16	ENSRFEG00010002358 #17	F8 (ENSRFEG00010002258) #14	FUNDC2 (ENSRFEG00010002186) #19	MTCP1 (ENSRFEG00010000401) #20	BRCC3 (ENSRFEG00010000187) #21	ENSRFEG00010000146	VBP1 (ENSRFEG00010000140) #22	RAB39B (ENSRFEG00010000135) #25	CLIC2 (ENSRFEG00010000129) #26	ENSRFEG00010000120 #17	ENSRFEG00010000099 #16	ENSRFEG00010000092 #16	TMLHE (ENSRFEG00010000091) #27	SPRY3 (ENSRFEG00010000089) #28	VAMP7 (ENSRFEG00010000088) #31	ENSRFEG00010000087	ENSRFEG00010000086	ENSRFEG00010000085	ENSRFEG00010000084	FAAH2 (ENSRFEG00010000083)	ENSRFEG00010000082	ENSRFEG00010000081
Microbat	MODERN SPECIES	1106						ENSMLUG00000022546	ENSMLUG00000025092	GAB3 (ENSMLUG00000007763) #11	DKC1 (ENSMLUG00000011918) #12	MPP1 (ENSMLUG00000011938) #13	F8 (ENSMLUG00000002117) #14	ENSMLUG00000007776 #19	CMC4 (ENSMLUG00000024035)	MTCP1 (ENSMLUG00000003916) #20	BRCC3 (ENSMLUG00000005420) ##21	VBP1 (ENSMLUG00000015396) #22	RAB39B (ENSMLUG00000007660) #25	CLIC2 (ENSMLUG00000002374) #26	ENSMLUG00000029102 #16	ENSMLUG00000025178 #17	ENSMLUG00000022365 #16	SPRY3 (ENSMLUG00000022306) #28	VAMP7 (ENSMLUG00000012765) #31	ENSMLUG00000011370	ENSMLUG00000025240	FAAH2 (ENSMLUG00000017725)	ENSMLUG00000002732	ENSMLUG00000006656	SPIN3 (ENSMLUG00000015431)	ENSMLUG00000004357	UBQLN2 (ENSMLUG00000007552)
Carnivora	ANCESTRAL SPECIES	11	ENSGT00410000025802.h ##10	ENSGT00410000025802.g.b #10	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Felidae	ANCESTRAL SPECIES	29	ENSGT00950000183004.a.a.a.b	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744.m #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT01010000226875	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Panthera	ANCESTRAL SPECIES	53	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744.m #13	ENSGT00390000005685	ENSGT00940000160294.k #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000160294.l.a #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT01010000226875	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Tiger	MODERN SPECIES	288											ENSPTIG00000009117 #14	FUNDC2 (ENSPTIG00000008095) #19	CMC4 (ENSPTIG00000008061)	MTCP1 (ENSPTIG00000007940) #20	BRCC3 (ENSPTIG00000007619) ##21	VBP1 (ENSPTIG00000006992) #22	RAB39B (ENSPTIG00000006927) #25	CLIC2 (ENSPTIG00000006873) #26	TMLHE (ENSPTIG00000006659) #27
Panthera_a	ANCESTRAL SPECIES	64	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744.m #13	ENSGT00390000005685	ENSGT00940000160294.k #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000160294.l.a #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26
leopard	MODERN SPECIES	270									F8 (ENSPPRG00000019076) #14	ENSPPRG00000012508 #16	FUNDC2 (ENSPPRG00000018602) #19	ENSPPRG00000012502	CMC4 (ENSPPRG00000018580)	MTCP1 (ENSPPRG00000018558) #20	BRCC3 (ENSPPRG00000018359) #21	VBP1 (ENSPPRG00000017482) #22	RAB39B (ENSPPRG00000017193) #25	CLIC2 (ENSPPRG00000016958) #26
lion	MODERN SPECIES	88	MTM1 (ENSPLOG00000010530)	MAMLD1 (ENSPLOG00000010470)	GAB3 (ENSPLOG00000010419) #11	DKC1 (ENSPLOG00000010363) #12	ENSPLOG00000010239 #13	SMIM9 (ENSPLOG00000010183)	ENSPLOG00000010169 #16	ENSPLOG00000010158 #17	F8 (ENSPLOG00000010029) #14	ENSPLOG00000009920	FUNDC2 (ENSPLOG00000009895) #19	CMC4 (ENSPLOG00000009878)	MTCP1 (ENSPLOG00000009860) #20	BRCC3 (ENSPLOG00000009840) #21	ENSPLOG00000009805	VBP1 (ENSPLOG00000009773) #22	RAB39B (ENSPLOG00000009756) #25	ENSPLOG00000009737	ENSPLOG00000009727 #16	ENSPLOG00000009715 #17	ENSPLOG00000009699 #16	TMLHE (ENSPLOG00000009686) #27	ENSPLOG00000009660	SPRY3 (ENSPLOG00000009644) #28	VAMP7 (ENSPLOG00000009591) #31	GTPBP6 (ENSPLOG00000009500)
Cat	MODERN SPECIES	252	FAM3A (ENSFCAG00000035237)	G6PD (ENSFCAG00000043880)	IKBKG (ENSFCAG00000029840)	ENSFCAG00000048808	GAB3 (ENSFCAG00000006576) #11	DKC1 (ENSFCAG00000006577) #12	MPP1 (ENSFCAG00000006578) #13	SMIM9 (ENSFCAG00000040693)	F8 (ENSFCAG00000048336) #14	ENSFCAG00000045185 #17	FUNDC2 (ENSFCAG00000031335) #19	CMC4 (ENSFCAG00000023645)	MTCP1 (ENSFCAG00000029629) #20	BRCC3 (ENSFCAG00000019258) #21	ENSFCAG00000027511	VBP1 (ENSFCAG00000022037) #22	RAB39B (ENSFCAG00000038920) #25	CLIC2 (ENSFCAG00000038526) #26	H2AB2 (ENSFCAG00000044576) #16	ENSFCAG00000045412 #17	H2AB3 (ENSFCAG00000044965) #16	TMLHE (ENSFCAG00000023758) #27	ENSFCAG00000047531	SPRY3 (ENSFCAG00000028342) #28	VAMP7 (ENSFCAG00000025706) #31	ENSFCAG00000048570	ENSFCAG00000010308
Caniformia	ANCESTRAL SPECIES	22	ENSGT00410000025802.h ##10	ENSGT00410000025802.g.b #10	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT01030000235238.c	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000006885.a #20	ENSGT00390000000360.r.c.b ##21	ENSGT00390000012647	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020 #16	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Ursidae	ANCESTRAL SPECIES	45	ENSGT00950000183004.a.a.a.b	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744.p #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000013102.f	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020 #16	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28
Ursus	ANCESTRAL SPECIES	215					ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744.p #13	ENSGT00940000163020 #16	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000013102.f	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.c.b ##21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28
Polar bear	MODERN SPECIES	139					ENSUMAG00000016855 #10	GAB3 (ENSUMAG00000016863) #11	DKC1 (ENSUMAG00000016899) #12	MPP1 (ENSUMAG00000017156) #13	F8 (ENSUMAG00000017227) #14	ENSUMAG00000017273 #16	FUNDC2 (ENSUMAG00000017279) #19	ENSUMAG00000017285	CMC4 (ENSUMAG00000017289)	MTCP1 (ENSUMAG00000017296) #20	BRCC3 (ENSUMAG00000017317) ##21	VBP1 (ENSUMAG00000017374) #22	ENSUMAG00000017379	RAB39B (ENSUMAG00000017386) #25	CLIC2 (ENSUMAG00000017393) #26	TMLHE (ENSUMAG00000017400) #27	SPRY3 (ENSUMAG00000017413) #28
American black bear	MODERN SPECIES	4647																VBP1 (ENSUAMG00000023019) #22	ENSUAMG00000023025	RAB39B (ENSUAMG00000023026) #25	CLIC2 (ENSUAMG00000023027) #26	ENSUAMG00000023029 #16
Giant Panda	MODERN SPECIES	2288	IKBKG (ENSAMEG00000000410)	ENSAMEG00000019272	ENSAMEG00000019282	GAB3 (ENSAMEG00000001366) #11	DKC1 (ENSAMEG00000002776) #12	MPP1 (ENSAMEG00000002802) #13	SMIM9 (ENSAMEG00000028154)	F8 (ENSAMEG00000002491) #14	ENSAMEG00000028778	FUNDC2 (ENSAMEG00000011956) #19	ENSAMEG00000024837	CMC4 (ENSAMEG00000011961)	MTCP1 (ENSAMEG00000028878) #20	BRCC3 (ENSAMEG00000011969) #21	ENSAMEG00000011976	VBP1 (ENSAMEG00000030279) #22	ENSAMEG00000028809	RAB39B (ENSAMEG00000009075) #25	CLIC2 (ENSAMEG00000009077) #26	ENSAMEG00000026904 #16	ENSAMEG00000025129 #16	TMLHE (ENSAMEG00000013789) #27	ENSAMEG00000006387 #31
Mustelinae	ANCESTRAL SPECIES	168					ENSGT01030000235238.d	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000006885.a #20	ENSGT00390000012647	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020 #16	ENSGT00530000063582.a #27
American mink	MODERN SPECIES	556										ENSNVIG00000011778 #14	FUNDC2 (ENSNVIG00000011768) #19	MTCP1 (ENSNVIG00000011747) #20	CMC4 (ENSNVIG00000011740)	BRCC3 (ENSNVIG00000011655) #21	ENSNVIG00000011635	VBP1 (ENSNVIG00000011591) #22	RAB39B (ENSNVIG00000011584) #25	CLIC2 (ENSNVIG00000011570) #26	ENSNVIG00000011553 #17	TMLHE (ENSNVIG00000011500) #27
Ferret	DUPLICATION
Ferret	MODERN SPECIES	183	MYOZ2 (ENSMPUG00000017430)	USP53 (ENSMPUG00000017422)	FABP2 (ENSMPUG00000017421)	PDE5A (ENSMPUG00000017420)	ENSMPUG00000017417	MAD2L1 (ENSMPUG00000017416)	PRDM5 (ENSMPUG00000017415)	NDNF (ENSMPUG00000017414)	TNIP3 (ENSMPUG00000017413)	QRFPR (ENSMPUG00000017412)	ANXA5 (ENSMPUG00000017411)	EXOSC9 (ENSMPUG00000017410)	CCNA2 (ENSMPUG00000017407)	BBS7 (ENSMPUG00000017404)	TRPC3 (ENSMPUG00000017402)	ENSMPUG00000017399 #22	BLTP1 (ENSMPUG00000017395)	ADAD1 (ENSMPUG00000017394)	IL2 (ENSMPUG00000017393)	IL21 (ENSMPUG00000017391)	ENSMPUG00000018974	ENSMPUG00000017388	BBS12 (ENSMPUG00000018971)	FGF2 (ENSMPUG00000017387)	NUDT6 (ENSMPUG00000017386)	SPATA5 (ENSMPUG00000017385)	SPRY1 (ENSMPUG00000018965) ##28	ENSMPUG00000017384	ANKRD50 (ENSMPUG00000017383)	FAT4 (ENSMPUG00000017382)	INTU (ENSMPUG00000017381)
Ferret	MODERN SPECIES	463	ENSMPUG00000016150	DUSP9 (ENSMPUG00000016151)	PNCK (ENSMPUG00000016148)	ENSMPUG00000016146	ENSMPUG00000019549	ENSMPUG00000019547	ENSMPUG00000019545	ENSMPUG00000016145	ENSMPUG00000019543	GAB3 (ENSMPUG00000016143) #11	MPP1 (ENSMPUG00000016141) #13	F8 (ENSMPUG00000016139) #14	DKC1 (ENSMPUG00000016136) #12	BRCC3 (ENSMPUG00000016134) #21	ENSMPUG00000016133	ENSMPUG00000016131 #22	RAB39B (ENSMPUG00000016129) #25	CLIC2 (ENSMPUG00000016128) #26	ENSMPUG00000019541 #16	TMLHE (ENSMPUG00000016127) #27	ENSMPUG00000016113 #31
Canidae	ANCESTRAL SPECIES	50	ENSGT00530000063808.a	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##10	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092.a #12	ENSGT00940000158744 #13	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000012647.a	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h ##10	ENSGT00410000025802.g.b.k #10	ENSGT00940000159803 #11	ENSGT00510000047092.a #12	ENSGT00940000158744 #13	ENSGT00940000163020 #16	ENSGT00390000016992.m #17	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000006885.a #20	ENSGT00390000012647.a	ENSGT00390000000360.r.c.a ##21	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Dog	MODERN SPECIES	144	G6PD (ENSCAFG00845029388)	IKBKG (ENSCAFG00845029634)	cOR7R1 (ENSCAFG00845029673)	ENSCAFG00845029686 ##10	ENSCAFG00845029697 #10	LAGE3 (ENSCAFG00845029708) ##10	ENSCAFG00845029817 #10	DKC1 (ENSCAFG00845029852) #12	MPP1 (ENSCAFG00845029936) #13	F8 (ENSCAFG00845030098) #14	ENSCAFG00845030269 #16	ENSCAFG00845030278 #17	FUNDC2 (ENSCAFG00845030300) ##21	CMC4 (ENSCAFG00845030338)	MTCP1 (ENSCAFG00845030350) #20	VBP1 (ENSCAFG00845017867) #22	RAB39B (ENSCAFG00845017965) #25	CLIC2 (ENSCAFG00845017998) #26	ENSCAFG00845018126 #27	SPRY3 (ENSCAFG00845018191) #28	VAMP7 (ENSCAFG00845018278) #31	ENSCAFG00845018459 #29
Dingo	MODERN SPECIES	383	ENSCAFG00020008988	ENSCAFG00020008985	ENSCAFG00020008976 ##10	ENSCAFG00020008968 ##10	ENSCAFG00020008959 #10	ENSCAFG00020008942 #11	ENSCAFG00020008918 #12	MPP1 (ENSCAFG00020008744) #13	ENSCAFG00020008739 #16	ENSCAFG00020008736 #17	F8 (ENSCAFG00020008704) #14	FUNDC2 (ENSCAFG00020008699) #19	MTCP1 (ENSCAFG00020008697) #20	CMC4 (ENSCAFG00020008696)	ENSCAFG00020008684 ##21	VBP1 (ENSCAFG00020008675) #22	RAB39B (ENSCAFG00020008673) #25	CLIC2 (ENSCAFG00020008670) #26	ENSCAFG00020008667 #16	ENSCAFG00020008665 #17	ENSCAFG00020008663 #16	TMLHE (ENSCAFG00020008661) #27	ENSCAFG00020008659 #29	SPRY3 (ENSCAFG00020008657) #28	VAMP7 (ENSCAFG00020008654) #31
Red fox	DUPLICATION
Red fox	MODERN SPECIES	20							ENSVVUG00000020739 #10	DKC1 (ENSVVUG00000020734) #12	MPP1 (ENSVVUG00000020728) #13	F8 (ENSVVUG00000020717) #14	FUNDC2 (ENSVVUG00000020713) #19	CMC4 (ENSVVUG00000020710)	MTCP1 (ENSVVUG00000020711) #20	ENSVVUG00000020709 #21	ENSVVUG00000020707	ENSVVUG00000020703 #22	ADAP2 (ENSVVUG00000020701)	RNF135 (ENSVVUG00000020698)	ENSVVUG00000020695	RHOT1 (ENSVVUG00000020640)	RHBDL3 (ENSVVUG00000020629)	CUNH17orf75 (ENSVVUG00000020625)	ZNF207 (ENSVVUG00000020618)	PSMD11 (ENSVVUG00000020613)	CDK5R1 (ENSVVUG00000020611)	MYO1D (ENSVVUG00000020589)	TMEM98 (ENSVVUG00000020587)	SPACA3 (ENSVVUG00000020586)	ASIC2 (ENSVVUG00000020562)	ENSVVUG00000020545	CCL2 (ENSVVUG00000020543)
Red fox	MODERN SPECIES	121	LGALS9 (ENSVVUG00000015869)	KSR1 (ENSVVUG00000015399)	WSB1 (ENSVVUG00000015381)	ENSVVUG00000015375	OMG (ENSVVUG00000015373)	EVI2B (ENSVVUG00000015368)	EVI2A (ENSVVUG00000015363)	NF1 (ENSVVUG00000012588)	RAB11FIP4 (ENSVVUG00000012277)	COPRS (ENSVVUG00000012255)	UTP6 (ENSVVUG00000012238)	SUZ12 (ENSVVUG00000012214)	CRLF3 (ENSVVUG00000012205)	ATAD5 (ENSVVUG00000012156)	TEFM (ENSVVUG00000012150)	ENSVVUG00000012145 #22	RAB39B (ENSVVUG00000012142) #25	CLIC2 (ENSVVUG00000012140) #26
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00410000025802.g.b #10	ENSGT01030000235238	ENSGT00410000025802.h ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Suina	ANCESTRAL SPECIES	7	ENSGT00730000111022	ENSGT00950000182808.b.b	ENSGT00950000183004.a.a.a.b	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992 #17	ENSGT00940000163020 #16	ENSGT00940000160294 #14	ENSGT00390000005685	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT01030000235464 #30	ENSGT00510000047733 #31
Pig	MODERN SPECIES	300	G6PD (ENSSSCG00000025108)	IKBKG (ENSSSCG00000012825)	ENSSSCG00000012827	ENSSSCG00000049540 #10	GAB3 (ENSSSCG00000012824) #11	DKC1 (ENSSSCG00000012823) #12	F8 (ENSSSCG00000012822) #14	SMIM9 (ENSSSCG00000055917)	ENSSSCG00000057758 #16	ENSSSCG00000054901 #17	FUNDC2 (ENSSSCG00000012817) #19	CMC4 (ENSSSCG00000062015)	MTCP1 (ENSSSCG00000012816) #20	BRCC3 (ENSSSCG00000012813) ##21	ENSSSCG00000012812	VBP1 (ENSSSCG00000012811) #22	RAB39B (ENSSSCG00000024233) #25	ENSSSCG00000057979 #17	ENSSSCG00000055307 #16	CLIC2 (ENSSSCG00000039998) #26	ENSSSCG00000063292 #16	TMLHE (ENSSSCG00000038442) #27	ENSSSCG00000035312 #29	SPRY3 (ENSSSCG00000034345) #28	VAMP7 (ENSSSCG00000029615) #31
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	44	IKBKG (ENSCWAG00000000145)	ENSCWAG00000000203	ENSCWAG00000000223	ENSCWAG00000000236 #10	GAB3 (ENSCWAG00000000272) #11	DKC1 (ENSCWAG00000000314) #12	MPP1 (ENSCWAG00000000412) #13	SMIM9 (ENSCWAG00000000458)	ENSCWAG00000000473 #14	ENSCWAG00000000488 #16	ENSCWAG00000000499 #17	FUNDC2 (ENSCWAG00000000516) #19	CMC4 (ENSCWAG00000000535)	MTCP1 (ENSCWAG00000000545) #20	BRCC3 (ENSCWAG00000000584) ##21	ENSCWAG00000000727 #22	RAB39B (ENSCWAG00000000758) #25	CLIC2 (ENSCWAG00000000773) #26	ENSCWAG00000000788 #16	ENSCWAG00000000796	TMLHE (ENSCWAG00000000814) #27	ENSCWAG00000000835 #29	SPRY3 (ENSCWAG00000000847) #28	ENSCWAG00000000859 #30	VAMP7 (ENSCWAG00000000883) #31	ENSCWAG00000000908	ENSCWAG00000000922	ENSCWAG00000000971
Chacoan peccary	MODERN SPECIES	950	GPR62 (ENSCWAG00000012500)	PARP3 (ENSCWAG00000012452)	RRP9 (ENSCWAG00000012415)	IQCF1 (ENSCWAG00000012365)	IQCF5 (ENSCWAG00000012338)	IQCF2 (ENSCWAG00000012302)	IQCF3 (ENSCWAG00000012249)	ENSCWAG00000012222	IQCF6 (ENSCWAG00000012162)	GRM2 (ENSCWAG00000011986)	TEX264 (ENSCWAG00000011911)	RAD54L2 (ENSCWAG00000011847)	DCAF1 (ENSCWAG00000021359)	RBM15B (ENSCWAG00000021353)	MANF (ENSCWAG00000021349)	ENSCWAG00000021342 #22	DOCK3 (ENSCWAG00000021297)	MAPKAPK3 (ENSCWAG00000021277)	CISH (ENSCWAG00000021269)	HEMK1 (ENSCWAG00000021261)	C3orf18 (ENSCWAG00000021250)	CACNA2D2 (ENSCWAG00000020731)	TMEM115 (ENSCWAG00000020681)	CYB561D2 (ENSCWAG00000020669)	NPRL2 (ENSCWAG00000020648)	ZMYND10 (ENSCWAG00000020600)	RASSF1 (ENSCWAG00000020553)	TUSC2 (ENSCWAG00000020538)	HYAL2 (ENSCWAG00000020509)	HYAL1 (ENSCWAG00000020497)	NAA80 (ENSCWAG00000020487)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00410000025802.g.b #10	ENSGT01030000235238	ENSGT00410000025802.h ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00960000186859 #7	ENSGT00410000025802.g.b #10	ENSGT01030000235238	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Pecora	ANCESTRAL SPECIES	28				ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020.bb #16	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444	ENSGT00940000154972	ENSGT00940000161201	ENSGT00940000155374
Percora_a	ANCESTRAL SPECIES	30				ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00390000016992 #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00940000163020.bb #16	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444	ENSGT00940000154972	ENSGT00940000161201	ENSGT00940000155374
Bovidae	ANCESTRAL SPECIES	29				ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00390000016992.s #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000163020.bb #16	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00960000188264.C	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444
Caprinae	ANCESTRAL SPECIES	53	ENSGT00940000159611	ENSGT00390000000141	ENSGT00950000182994.A.n.a	ENSGT00390000001134.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00390000016992.s #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000163020.bb #16	ENSGT00940000161397 #26	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00960000188264.C
Rambouillet Sheep	MODERN SPECIES	205	DACH2 (ENSOARG00020021981)	ENSOARG00020022547	ENSOARG00020022607	ENSOARG00020022613	ENSOARG00020022631	GAB3 (ENSOARG00020015493) #11	DKC1 (ENSOARG00020015553) #12	MPP1 (ENSOARG00020015726) #13	SMIM9 (ENSOARG00020015879)	F8 (ENSOARG00020015985) #14	ENSOARG00020016962 #17	FUNDC2 (ENSOARG00020017001) #19	CMC4 (ENSOARG00020017081)	MTCP1 (ENSOARG00020017110) #20	BRCC3 (ENSOARG00020017169) #21	VBP1 (ENSOARG00020017496) #22	RAB39B (ENSOARG00020017597) #25	ENSOARG00020017633 #17	ENSOARG00020017655 #16	RIDA (ENSOARG00020017680)	CLIC2 (ENSOARG00020017713) #26	SPRY3 (ENSOARG00020017989) #28	VAMP7 (ENSOARG00020018024) #31	ENSOARG00020018236	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504
Goat	MODERN SPECIES	36															ENSCHIG00000015970	VBP1 (ENSCHIG00000019363) #22	RAB39B (ENSCHIG00000000158) #25	ENSCHIG00000018644 #17	ENSCHIG00000000266	CLIC2 (ENSCHIG00000016619) #26	ENSCHIG00000000748	TMLHE (ENSCHIG00000000055) #27	VAMP7 (ENSCHIG00000000128) #31
Bovinae	ANCESTRAL SPECIES	42					ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000160294 #14	ENSGT00390000016992.s #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a	ENSGT00940000161825.v.a.b	ENSGT00910000144363.g.a.a.a.a.a	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167
Bos	ANCESTRAL SPECIES	36	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000160294 #14	ENSGT00390000016992.s #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a	ENSGT00390000012182.i.b	ENSGT00940000161825.v.b	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935
Bos_b	ANCESTRAL SPECIES	31	ENSGT00390000003937	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000160294 #14	ENSGT00390000016992.s #17	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a	ENSGT00390000012182.i.b	ENSGT00940000161825.v.b	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935
Hybrid Bos Indicus	MODERN SPECIES	315	HAUS7 (ENSBIXG00005001172)	ENSBIXG00005011766	ENSBIXG00005011758	ENSBIXG00005001157	ENSBIXG00005011731	GAB3 (ENSBIXG00005011700) #11	DKC1 (ENSBIXG00005011665) #12	MPP1 (ENSBIXG00005011616) #13	F8 (ENSBIXG00005006715) #14	ENSBIXG00005011325 #17	FUNDC2 (ENSBIXG00005006322) #19	CMC4 (ENSBIXG00005001057)	MTCP1 (ENSBIXG00005011273) #20	BRCC3 (ENSBIXG00005001036) #21	ENSBIXG00005011073	VBP1 (ENSBIXG00005011035) #22	ENSBIXG00005010980	RAB39B (ENSBIXG00005010970) #25	ENSBIXG00005010957 #17	ENSBIXG00005000980	CLIC2 (ENSBIXG00005010938) #26	ENSBIXG00005010929	TMLHE (ENSBIXG00005000964) #27	ENSBIXG00005010854 #29	SPRY3 (ENSBIXG00005010830) #28	VAMP7 (ENSBIXG00005010795) #31	ENSBIXG00005010749	ENSBIXG00005010717	ENSBIXG00005000928	ENSBIXG00005000922	ENSBIXG00005010675
Cow	MODERN SPECIES	177	HAUS7 (ENSBTAG00000014095)	ENSBTAG00000050830	ENSBTAG00000047917	ENSBTAG00000020185	ENSBTAG00000023820	GAB3 (ENSBTAG00000013044) #11	DKC1 (ENSBTAG00000013045) #12	MPP1 (ENSBTAG00000013046) #13	ENSBTAG00000033167 #17	F8 (ENSBTAG00000010726) #14	FUNDC2 (ENSBTAG00000016977) #19	CMC4 (ENSBTAG00000007813)	MTCP1 (ENSBTAG00000045697) #20	BRCC3 (ENSBTAG00000007817) #21	ENSBTAG00000011144	VBP1 (ENSBTAG00000017265) #22	ENSBTAG00000052586	RAB39B (ENSBTAG00000019779) #25	ENSBTAG00000023978 #17	CLIC2 (ENSBTAG00000010948) #26	TMLHE (ENSBTAG00000011648) #27	SPRY3 (ENSBTAG00000010245) #28	VAMP7 (ENSBTAG00000049615) #31	ZNF185 (ENSBTAG00000005776)	NSDHL (ENSBTAG00000009231)	CETN2 (ENSBTAG00000007844)	GABRQ (ENSBTAG00000013002)	ENSBTAG00000048998	GABRA3 (ENSBTAG00000006691)	ENSBTAG00000012748	GABRE (ENSBTAG00000013548)
Bos_a	ANCESTRAL SPECIES	39	ENSGT00390000003937	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT01030000235238.e.b	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d.b #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #25	ENSGT00390000016992.t #17	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a
Domestic yak	MODERN SPECIES	69	ENSBGRG00000018441	ENSBGRG00000018361	ENSBGRG00000018336	GAB3 (ENSBGRG00000018202) #11	DKC1 (ENSBGRG00000017777) #12	MPP1 (ENSBGRG00000017459) #13	ENSBGRG00000017426	ENSBGRG00000017378 #17	F8 (ENSBGRG00000024985) #14	FUNDC2 (ENSBGRG00000024951) #19	ENSBGRG00000024933	MTCP1 (ENSBGRG00000024911) #20	BRCC3 (ENSBGRG00000024843) #21	ENSBGRG00000024824	ENSBGRG00000024794	VBP1 (ENSBGRG00000024762) #22	ENSBGRG00000024744	RAB39B (ENSBGRG00000024738) #25	ENSBGRG00000024735 #17	CLIC2 (ENSBGRG00000024695) #26	TMLHE (ENSBGRG00000024645) #27	SPRY3 (ENSBGRG00000024611) #28	VAMP7 (ENSBGRG00000024507) #31	ENSBGRG00000024491	ENSBGRG00000024481	ENSBGRG00000024460	ENSBGRG00000024444	ENSBGRG00000024428	ENSBGRG00000024396	MTM1 (ENSBGRG00000024246)	MTMR1 (ENSBGRG00000023860)
Wild yak	MODERN SPECIES	1108							GAB3 (ENSBMUG00000006895) #11	DKC1 (ENSBMUG00000006907) #12	MPP1 (ENSBMUG00000006975) #13	F8 (ENSBMUG00000007027) #14	FUNDC2 (ENSBMUG00000007050) #19	CMC4 (ENSBMUG00000007064)	MTCP1 (ENSBMUG00000007077) #20	BRCC3 (ENSBMUG00000007115) #21	ENSBMUG00000007145	VBP1 (ENSBMUG00000007185) #22	RAB39B (ENSBMUG00000007199) #25
American bison	MODERN SPECIES	2773																VBP1 (ENSBBBG00000025267) #22	ENSBBBG00000025286
Siberian musk deer	MODERN SPECIES	67						ENSMMSG00000011090	GAB3 (ENSMMSG00000011112) #11	DKC1 (ENSMMSG00000011162) #12	MPP1 (ENSMMSG00000011258) #13	SMIM9 (ENSMMSG00000011384)	F8 (ENSMMSG00000011419) #14	ENSMMSG00000011482 #19	CMC4 (ENSMMSG00000011510)	MTCP1 (ENSMMSG00000011532) #20	BRCC3 (ENSMMSG00000011560) #21	VBP1 (ENSMMSG00000011660) #22	RAB39B (ENSMMSG00000011708) #25	ENSMMSG00000011732 #17	CLIC2 (ENSMMSG00000011739) #26	ENSMMSG00000011761 #16	TMLHE (ENSMMSG00000011781) #27	ENSMMSG00000011850 #29	SPRY3 (ENSMMSG00000011861) #28	VAMP7 (ENSMMSG00000011884) #31	ENSMMSG00000012009	ENSMMSG00000013968	ENSMMSG00000013979	ENSMMSG00000014004
Cetacea	ANCESTRAL SPECIES	19	ENSGT00530000063808.a	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f.d.a #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00530000063808.a	ENSGT00410000025802.g.b #10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f.d.a #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Sperm whale	MODERN SPECIES	13	FAM50A (ENSPCTG00005014324)	GDI1 (ENSPCTG00005014385)	IKBKG (ENSPCTG00005014430)	ENSPCTG00005014674 #10	GAB3 (ENSPCTG00005014727) #11	DKC1 (ENSPCTG00005014862) #12	MPP1 (ENSPCTG00005014958) #13	SMIM9 (ENSPCTG00005015221)	F8 (ENSPCTG00005015296) #14	ENSPCTG00005015667 #16	F8A1 (ENSPCTG00005015687) #17	FUNDC2 (ENSPCTG00005015711) #19	CMC4 (ENSPCTG00005015746)	MTCP1 (ENSPCTG00005015780) #20	BRCC3 (ENSPCTG00005015822) #21	VBP1 (ENSPCTG00005016073) #22	RAB39B (ENSPCTG00005016182) #25	ENSPCTG00005016223 #16	CLIC2 (ENSPCTG00005016241) #26	ENSPCTG00005016292 #16	TMLHE (ENSPCTG00005016307) #27	ENSPCTG00005016361 #29	SPRY3 (ENSPCTG00005016380) #28	ENSPCTG00005016415 #31
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00530000063808.a	ENSGT00960000186859 #7	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020 #16	ENSGT00390000016992 #17	ENSGT00940000154783.f.d.a #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00530000063808.a	ENSGT00960000186859 #7	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020.y #16	ENSGT00390000016992.x #17	ENSGT00940000154783.f.d.a #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00390000000360.r.d #21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992.w #17	ENSGT00940000163020.z #16	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00530000063435.a	ENSGT00530000063808.a	ENSGT00960000186859 #7	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000163020.z #16	ENSGT00390000016992.w #17	ENSGT00940000154783.f.d.a #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.q.a ##21	ENSGT00950000183068.a.a	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00390000016992.x #17	ENSGT00940000161397 #26	ENSGT00940000163020.y #16	ENSGT00530000063582.a #27	ENSGT00950000185382 #29	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Beluga whale	MODERN SPECIES	139	G6PD (ENSDLEG00000011468)	IKBKG (ENSDLEG00000011500)	ENSDLEG00000011523 #7	ENSDLEG00000011545	GAB3 (ENSDLEG00000011559) #11	DKC1 (ENSDLEG00000011603) #12	MPP1 (ENSDLEG00000011647) #13	F8 (ENSDLEG00000011690) #14	ENSDLEG00000011965 #16	ENSDLEG00000011977 #17	FUNDC2 (ENSDLEG00000011985) #19	CMC4 (ENSDLEG00000011999)	MTCP1 (ENSDLEG00000012008) #20	BRCC3 (ENSDLEG00000012025) ##21	ENSDLEG00000012046	VBP1 (ENSDLEG00000012075) #22	RAB39B (ENSDLEG00000012091) #25	ENSDLEG00000012094 #17	CLIC2 (ENSDLEG00000012100) #26	TMLHE (ENSDLEG00000012114) #27	ENSDLEG00000012124 #29	SPRY3 (ENSDLEG00000012130) #28	VAMP7 (ENSDLEG00000012138) #31
Narwhal	MODERN SPECIES	310		ENSMMNG00015013602	ENSMMNG00015013606 #7	GAB3 (ENSMMNG00015013614) #11	DKC1 (ENSMMNG00015013634) #12	MPP1 (ENSMMNG00015013674) #13	SMIM9 (ENSMMNG00015013706)	F8 (ENSMMNG00015013732) #14	ENSMMNG00015013765 #16	ENSMMNG00015013774 #19	ENSMMNG00015013784	CMC4 (ENSMMNG00015013793)	MTCP1 (ENSMMNG00015013799) #20	BRCC3 (ENSMMNG00015013819) ##21	ENSMMNG00015013846	VBP1 (ENSMMNG00015013861) #22	RAB39B (ENSMMNG00015013876) #25	CLIC2 (ENSMMNG00015013884) #26	ENSMMNG00015013897 #16	TMLHE (ENSMMNG00015013910) #27	ENSMMNG00015013925 #29	SPRY3 (ENSMMNG00015013931) #28	VAMP7 (ENSMMNG00015013948) #31	DUSP22 (ENSMMNG00015013987)	IRF4 (ENSMMNG00015014004)	EXOC2 (ENSMMNG00015014030)	FOXF2 (ENSMMNG00015014085)	FOXC1 (ENSMMNG00015014093)	GMDS (ENSMMNG00015014105)	ENSMMNG00015010189	MYLK4 (ENSMMNG00015010218)
Vaquita	MODERN SPECIES	34	ENSPSNG00000022407	ENSPSNG00000022414 #7	ENSPSNG00000022416 ##10	GAB3 (ENSPSNG00000022421) #11	DKC1 (ENSPSNG00000022426) #12	MPP1 (ENSPSNG00000022439) #13	SMIM9 (ENSPSNG00000022452)	F8 (ENSPSNG00000022465) #14	ENSPSNG00000022473 #16	ENSPSNG00000022476 #17	ENSPSNG00000022480 #19	MTCP1 (ENSPSNG00000022484) #20	CMC4 (ENSPSNG00000013473)	BRCC3 (ENSPSNG00000013597) #21	ENSPSNG00000013729	VBP1 (ENSPSNG00000013871) #22	RAB39B (ENSPSNG00000014023) #25	ENSPSNG00000014068 #17	CLIC2 (ENSPSNG00000014084) #26	ENSPSNG00000014126 #16	TMLHE (ENSPSNG00000014201) #27	ENSPSNG00000014251 #29	ENSPSNG00000014269	SPRY3 (ENSPSNG00000014299) #28	VAMP7 (ENSPSNG00000014345) #31
Dolphin	MODERN SPECIES	6143																VBP1 (ENSTTRG00000016258) #22	RAB39B (ENSTTRG00000016260) #25
Blue whale	MODERN SPECIES	40	IKBKG (ENSBMSG00010021344)	ENSBMSG00010021370	ENSBMSG00010021382	ENSBMSG00010021407 #11	DKC1 (ENSBMSG00010021430) #12	MPP1 (ENSBMSG00010021484) #13	SMIM9 (ENSBMSG00010021513)	F8 (ENSBMSG00010021526) #14	ENSBMSG00010021588 #16	ENSBMSG00010021592 #17	ENSBMSG00010021604 #19	CMC4 (ENSBMSG00010021610)	MTCP1 (ENSBMSG00010021613) #20	BRCC3 (ENSBMSG00010021621) #21	ENSBMSG00010021641	VBP1 (ENSBMSG00010021651) #22	RAB39B (ENSBMSG00010021663) #25	ENSBMSG00010021665 #17	ENSBMSG00010021668 #16	CLIC2 (ENSBMSG00010021672) #26	ENSBMSG00010021679 #16	TMLHE (ENSBMSG00010021682) #27	ENSBMSG00010021687 #29	SPRY3 (ENSBMSG00010021692) #28	VAMP7 (ENSBMSG00010021700) #31
Camelidae	ANCESTRAL SPECIES	107				ENSGT00410000025802.h.d ##10	ENSGT00410000025802.g.b.b #10	ENSGT00410000025802.h.c ##10	ENSGT00940000159803 #11	ENSGT00510000047092 #12	ENSGT00940000158744 #13	ENSGT00390000005685	ENSGT00940000160294 #14	ENSGT00940000154783.f #19	ENSGT00390000012647	ENSGT00390000006885.a #20	ENSGT00390000000360.r.d #21	ENSGT00390000018904 #22	ENSGT00940000158132 #25	ENSGT00940000163020 #16	ENSGT00940000161397 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #31
Arabian camel	MODERN SPECIES	204	IKBKG (ENSCDRG00005016363)	ENSCDRG00005016489	ENSCDRG00005016521 #10	ENSCDRG00005016563 ##10	ENSCDRG00005016586 #10	GAB3 (ENSCDRG00005016636) #11	ENSCDRG00005017097 ##10	DKC1 (ENSCDRG00005017117) #12	MPP1 (ENSCDRG00005017184) #13	SMIM9 (ENSCDRG00005017392)	F8 (ENSCDRG00005017422) #14	ENSCDRG00005017538 #19	CMC4 (ENSCDRG00005017574)	MTCP1 (ENSCDRG00005017604) #20	BRCC3 (ENSCDRG00005017635) #21	VBP1 (ENSCDRG00005017794) #22	RAB39B (ENSCDRG00005017901) #25	ENSCDRG00005018049 #16	CLIC2 (ENSCDRG00005018062) #26	TMLHE (ENSCDRG00005018097) #27	SPRY3 (ENSCDRG00005018145) #28	VAMP7 (ENSCDRG00005018159) #31	ENSCDRG00005018222
Alpaca	MODERN SPECIES	5665																VBP1 (ENSVPAG00000010239) #22