Euteleostomi	ANCESTRAL SPECIES	1010																ENSGT00390000018904 #22	ENSGT00940000158132 #23
Sarcopterygii	ANCESTRAL SPECIES	335							ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718
Tetrapoda	ANCESTRAL SPECIES	194							ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718
Amniota	ANCESTRAL SPECIES	24	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000165066	ENSGT01100000265326	ENSGT00940000164076.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000162146	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427
Mammalia	ANCESTRAL SPECIES	40	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000165066	ENSGT01100000265326	ENSGT00940000164076.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000162146	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427
Theria	ANCESTRAL SPECIES	46	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000000950.c.a	ENSGT01030000240148	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25
Eutheria	ANCESTRAL SPECIES	16	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT01100000263574.b.i.b	ENSGT01100000263574.b.i.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000164188	ENSGT00940000159444	ENSGT00940000154972	ENSGT00940000161201	ENSGT00940000155374
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00530000063808.a #10	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Primates	ANCESTRAL SPECIES	23	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000000360.r.a.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Haplorrhini	ANCESTRAL SPECIES	33	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h.a ##11	ENSGT00410000025802.h.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00550000075071	ENSGT00510000049125 #30
Platyrrhini	ANCESTRAL SPECIES	42	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.g #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Cebidae	ANCESTRAL SPECIES	27	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.a.a.a ##17	ENSGT00390000012647.g #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Marmoset	MODERN SPECIES	78	G6PD (ENSCJAG00000016775) #9	IKBKG (ENSCJAG00000016764) #10	GAB3 (ENSCJAG00000016753) #12	ENSCJAG00000082602	DKC1 (ENSCJAG00000004210) #13	MPP1 (ENSCJAG00000004227) #14	SMIM9 (ENSCJAG00000004256) #15	F8 (ENSCJAG00000004258) #16	ENSCJAG00000076498 #26	ENSCJAG00000079192 #25	ENSCJAG00000004287 ##17	CMC4 (ENSCJAG00000078864) #18	MTCP1 (ENSCJAG00000042284) #19	BRCC3 (ENSCJAG00000004308) #20	ENSCJAG00000085645 #21	VBP1 (ENSCJAG00000004338) #22	RAB39B (ENSCJAG00000064579) #23	CLIC2 (ENSCJAG00000004362) #24	ENSCJAG00000073788 #25	ENSCJAG00000071739 #26	TMLHE (ENSCJAG00000021685) #27	ENSCJAG00000082014	ENSCJAG00000073952	VAMP7 (ENSCJAG00000047535) #29	IL9R (ENSCJAG00000008510) #30	ENSCJAG00000071287
Cebidae_a	ANCESTRAL SPECIES	78	ENSGT00730000111022	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.a.a.a ##17	ENSGT00390000012647.g #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Capuchin	MODERN SPECIES	574													FUNDC2 (ENSCCAG00000019713) ##17	MTCP1 (ENSCCAG00000023625) #19	BRCC3 (ENSCCAG00000033753) #20	VBP1 (ENSCCAG00000022791) #22	RAB39B (ENSCCAG00000030469) #23	CLIC2 (ENSCCAG00000019952) #24	ENSCCAG00000031797 #25	TMLHE (ENSCCAG00000028430) #27	SPRY3 (ENSCCAG00000031944) #28	VAMP7 (ENSCCAG00000023295) #29	IL9R (ENSCCAG00000028031) #30
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	58	SERPINB13 (ENSSBOG00000032850)	ENSSBOG00000035703	SERPINB11 (ENSSBOG00000029576)	SERPINB7 (ENSSBOG00000022610)	SERPINB2 (ENSSBOG00000028920)	SERPINB10 (ENSSBOG00000026076)	HMSD (ENSSBOG00000022952)	SERPINB8 (ENSSBOG00000026962)	CDH7 (ENSSBOG00000023446)	CDH19 (ENSSBOG00000033631)	DSEL (ENSSBOG00000014071)	TMX3 (ENSSBOG00000032998)	ENSSBOG00000028203	DOK6 (ENSSBOG00000025872)	CD226 (ENSSBOG00000032857)	ENSSBOG00000024700 #22	RTTN (ENSSBOG00000006589)	SOCS6 (ENSSBOG00000020065)	ENSSBOG00000010853	ENSSBOG00000024747	CBLN2 (ENSSBOG00000019328)	NETO1 (ENSSBOG00000035887)	ENSSBOG00000033127	ENSSBOG00000026756	FBXO15 (ENSSBOG00000035966)	TIMM21 (ENSSBOG00000034325)	CYB5A (ENSSBOG00000006601)	C18orf63 (ENSSBOG00000027206)	DIPK1C (ENSSBOG00000024590)	CNDP2 (ENSSBOG00000027831)	CNDP1 (ENSSBOG00000020895)
Bolivian squirrel monkey	MODERN SPECIES	50	USP2 (ENSSBOG00000034295)	THY1 (ENSSBOG00000021168)	NECTIN1 (ENSSBOG00000027245)	TRIM29 (ENSSBOG00000021760)	OAF (ENSSBOG00000020591)	POU2F3 (ENSSBOG00000033756)	TLCD5 (ENSSBOG00000025172)	ARHGEF12 (ENSSBOG00000020565)	GRIK4 (ENSSBOG00000030277)	TBCEL (ENSSBOG00000028041)	TECTA (ENSSBOG00000019507)	SC5D (ENSSBOG00000020424)	ENSSBOG00000015796	SORL1 (ENSSBOG00000027914)	BLID (ENSSBOG00000028902)	ENSSBOG00000032996 #22	UBASH3B (ENSSBOG00000026096)	CRTAM (ENSSBOG00000020006)	ENSSBOG00000019647	JHY (ENSSBOG00000020543)	BSX (ENSSBOG00000035292)	ENSSBOG00000033034	ENSSBOG00000032961	ENSSBOG00000029761	ENSSBOG00000035266	CLMP (ENSSBOG00000033154)	GRAMD1B (ENSSBOG00000029940)	SCN3B (ENSSBOG00000035992)	ZNF202 (ENSSBOG00000030152)	TMEM225 (ENSSBOG00000005269)	VWA5A (ENSSBOG00000018587)
Bolivian squirrel monkey	MODERN SPECIES	296															ENSSBOG00000007609	ENSSBOG00000000429 #22	ENSSBOG00000020820	ENSSBOG00000032244
Bolivian squirrel monkey	MODERN SPECIES	236	UBL4A (ENSSBOG00000030369)	SLC10A3 (ENSSBOG00000027728) #7	FAM3A (ENSSBOG00000030279) #8	G6PD (ENSSBOG00000003239) #9	IKBKG (ENSSBOG00000033453) #10	ENSSBOG00000031845 #11	GAB3 (ENSSBOG00000027441) #12	DKC1 (ENSSBOG00000033746) #13	MPP1 (ENSSBOG00000026026) #14	SMIM9 (ENSSBOG00000018626) #15	F8 (ENSSBOG00000002240) #16	ENSSBOG00000034180 ##17	CMC4 (ENSSBOG00000033964) #18	MTCP1 (ENSSBOG00000021241) #19	BRCC3 (ENSSBOG00000035771) #20	ENSSBOG00000022626 #22	RAB39B (ENSSBOG00000025110) #23	CLIC2 (ENSSBOG00000022219) #24
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	712		SERPINB11 (ENSANAG00000032659)	SERPINB7 (ENSANAG00000034047)	SERPINB2 (ENSANAG00000021447)	SERPINB10 (ENSANAG00000023527)	ENSANAG00000030210	SERPINB8 (ENSANAG00000020762)	CDH7 (ENSANAG00000023216)	ENSANAG00000035255	CDH19 (ENSANAG00000021403)	DSEL (ENSANAG00000012597)	TMX3 (ENSANAG00000035190)	ENSANAG00000025522	DOK6 (ENSANAG00000032444)	CD226 (ENSANAG00000021699)	ENSANAG00000028436 #22	RTTN (ENSANAG00000030012)	SOCS6 (ENSANAG00000013654)	CBLN2 (ENSANAG00000032460)	NETO1 (ENSANAG00000024199)	FBXO15 (ENSANAG00000023790)	TIMM21 (ENSANAG00000026364)	CYB5A (ENSANAG00000020201)	C18orf63 (ENSANAG00000028286)	DIPK1C (ENSANAG00000028265)	CNDP2 (ENSANAG00000035349)	CNDP1 (ENSANAG00000031126)	ZNF407 (ENSANAG00000026344)	PTGR3 (ENSANAG00000035661)	TSHZ1 (ENSANAG00000016880)	ENSANAG00000035939
Mas night monkey	MODERN SPECIES	1311	PLXNA3 (ENSANAG00000027264)	LAGE3 (ENSANAG00000032507) ##11	ENSANAG00000029762	SLC10A3 (ENSANAG00000031182) #7	FAM3A (ENSANAG00000028348) #8	G6PD (ENSANAG00000031927) #9	IKBKG (ENSANAG00000032209) #10	GAB3 (ENSANAG00000032427) #12	DKC1 (ENSANAG00000022732) #13	MPP1 (ENSANAG00000034369) #14	F8 (ENSANAG00000025258) #16	ENSANAG00000030681 #17	ENSANAG00000029218 #18	MTCP1 (ENSANAG00000028247) #19	BRCC3 (ENSANAG00000024915) ##20	ENSANAG00000027213 #22	RAB39B (ENSANAG00000031228) #23	CLIC2 (ENSANAG00000033680) #24	ENSANAG00000030737 #25	TMLHE (ENSANAG00000026227) #27	SPRY3 (ENSANAG00000032737) #28	ENSANAG00000031493
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00550000075071	ENSGT00510000049125 #30
Hominoidea	ANCESTRAL SPECIES	29	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Hominidae	ANCESTRAL SPECIES	8	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.b.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125.d.a.a #30
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.b.a #11	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125.d.a.a #30
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00530000063435.a.i #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.b.a #11	ENSGT00530000063801.a.n	ENSGT00410000025802.h.b.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992.cb.b #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125.c #30
Pan	ANCESTRAL SPECIES	43	ENSGT00530000063808.a #10	ENSGT00390000002566	ENSGT00410000025802.h.b.b #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000011549.e	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992.bb #25	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a.m #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125.d.a.a #30
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	881																ENSPTRG00000044736 #22	ENSPTRG00000048400 #23	ENSPTRG00000043026 #24
Chimpanzee	MODERN SPECIES	972	ENSPTRG00000052333	ENSPTRG00000045486 #10	ENSPTRG00000022446 #11	GAB3 (ENSPTRG00000022447) #12	DKC1 (ENSPTRG00000022449) #13	MPP1 (ENSPTRG00000022450) #14	ENSPTRG00000046688	SMIM9 (ENSPTRG00000028167) #15	F8 (ENSPTRG00000022455) #16	ENSPTRG00000052848 #26	ENSPTRG00000052307 #25	FUNDC2 (ENSPTRG00000044160) ##17	CMC4 (ENSPTRG00000039562) #18	MTCP1 (ENSPTRG00000022457) #19	BRCC3 (ENSPTRG00000044491) #20	VBP1 (ENSPTRG00000022460) #22	RAB39B (ENSPTRG00000042083) #23	CLIC2 (ENSPTRG00000022462) #24	ENSPTRG00000044564 #26	ENSPTRG00000046305 #25	ENSPTRG00000045691 #27	SPRY3 (ENSPTRG00000048381) #28	VAMP7 (ENSPTRG00000046127) #29	ENSPTRG00000007524 #30
Bonobo	MODERN SPECIES	369	G6PD (ENSPPAG00000030117) #9	IKBKG (ENSPPAG00000019041) #10	ENSPPAG00000024171	ENSPPAG00000030022 ##11	GAB3 (ENSPPAG00000033506) #12	DKC1 (ENSPPAG00000023820) #13	MPP1 (ENSPPAG00000040588) #14	ENSPPAG00000031767	SMIM9 (ENSPPAG00000035097) #15	F8 (ENSPPAG00000033513) #16	ENSPPAG00000022594 #26	FUNDC2 (ENSPPAG00000028980) ##17	CMC4 (ENSPPAG00000030202) #18	MTCP1 (ENSPPAG00000029273) #19	BRCC3 (ENSPPAG00000039895) #20	VBP1 (ENSPPAG00000036017) #22	RAB39B (ENSPPAG00000041186) #23	CLIC2 (ENSPPAG00000041308) #24	ENSPPAG00000037387 #27	SPRY3 (ENSPPAG00000001617) #28	ENSPPAG00000032770 #29	IL9R (ENSPPAG00000035209) #30
Human	MODERN SPECIES	1827	IKBKG (ENSG00000269335) #10	CTAG1A (ENSG00000268651) ##11	CTAG1B (ENSG00000184033) ##11	CTAG2 (ENSG00000126890) ##11	GAB3 (ENSG00000160219) #12	DKC1 (ENSG00000130826) #13	MPP1 (ENSG00000130830) #14	SMIM9 (ENSG00000203870) #15	F8 (ENSG00000185010) #16	H2AB1 (ENSG00000274183) #26	F8A1 (ENSG00000288722) #25	FUNDC2 (ENSG00000165775) ##17	CMC4 (ENSG00000182712) #18	MTCP1 (ENSG00000214827) #19	BRCC3 (ENSG00000185515) #20	VBP1 (ENSG00000155959) #22	RAB39B (ENSG00000155961) #23	CLIC2 (ENSG00000155962) #24	H2AB2 (ENSG00000277858) #26	F8A2 (ENSG00000288709) #25	F8A3 (ENSG00000277150) #25	H2AB3 (ENSG00000277745) #26	TMLHE (ENSG00000185973) #27	SPRY3 (ENSG00000168939) #28	VAMP7 (ENSG00000124333) #29	IL9R (ENSG00000124334) #30	WASH6P (ENSG00000182484)
Gorilla	MODERN SPECIES	523	ENSGGOG00000040976	ENSGGOG00000022830 #11	ENSGGOG00000043272 ##11	ENSGGOG00000025843 #10	GAB3 (ENSGGOG00000001042) #12	DKC1 (ENSGGOG00000001045) #13	MPP1 (ENSGGOG00000001049) #14	ENSGGOG00000025061	SMIM9 (ENSGGOG00000005354) #15	F8 (ENSGGOG00000003600) #16	ENSGGOG00000003617 #25	FUNDC2 (ENSGGOG00000026954) ##17	CMC4 (ENSGGOG00000011528) #18	MTCP1 (ENSGGOG00000037091) #19	BRCC3 (ENSGGOG00000027248) ##20	VBP1 (ENSGGOG00000027061) #22	RAB39B (ENSGGOG00000005567) #23	CLIC2 (ENSGGOG00000023292) #24	ENSGGOG00000024008 #27	SPRY3 (ENSGGOG00000022101) #28	ENSGGOG00000001709 #29	ENSGGOG00000007446 #30
Orangutan	MODERN SPECIES	242	IKBKG (ENSPPYG00000020886) #10	ENSPPYG00000020887	ENSPPYG00000020888 ##11	CTAG2 (ENSPPYG00000020890) ##11	GAB3 (ENSPPYG00000020891) #12	DKC1 (ENSPPYG00000020892) #13	MPP1 (ENSPPYG00000020893) #14	SMIM9 (ENSPPYG00000020894) #15	F8 (ENSPPYG00000020895) #16	ENSPPYG00000035928 #26	ENSPPYG00000038630 #25	FUNDC2 (ENSPPYG00000020897) ##17	CMC4 (ENSPPYG00000020898) #18	MTCP1 (ENSPPYG00000035172) #19	BRCC3 (ENSPPYG00000020899) #20	VBP1 (ENSPPYG00000020900) #22	RAB39B (ENSPPYG00000032989) #23	CLIC2 (ENSPPYG00000020902) #24	ENSPPYG00000037853 #26	ENSPPYG00000038438 #25	ENSPPYG00000032431 #25	ENSPPYG00000030924 #26	ENSPPYG00000033468	TMLHE (ENSPPYG00000020904) #27	SPRY3 (ENSPPYG00000020905) #28	VAMP7 (ENSPPYG00000020906) #29	ENSPPYG00000020907 #30
Gibbon	MODERN SPECIES	449	FAM3A (ENSNLEG00000030950) #8	ENSNLEG00000014300 #9	ENSNLEG00000014311 #10	GAB3 (ENSNLEG00000014318) #12	DKC1 (ENSNLEG00000014323) #13	MPP1 (ENSNLEG00000014358) #14	ENSNLEG00000014423	ENSNLEG00000028336	SMIM9 (ENSNLEG00000014424) #15	F8 (ENSNLEG00000014427) #16	ENSNLEG00000018302 #25	ENSNLEG00000014443 ##17	CMC4 (ENSNLEG00000027271) #18	MTCP1 (ENSNLEG00000014453) #19	BRCC3 (ENSNLEG00000014460) #20	VBP1 (ENSNLEG00000014475) #22	RAB39B (ENSNLEG00000014505) #23	CLIC2 (ENSNLEG00000028091) #24	SPRY3 (ENSNLEG00000018303) #28	ENSNLEG00000014513 #29	IL9R (ENSNLEG00000014552) #30
Cercopithecidae	ANCESTRAL SPECIES	37	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	25	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.hb #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00530000063808.a #10	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.hb #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Cercopithecinae_b	ANCESTRAL SPECIES	66					ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904.hb #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Olive baboon	MODERN SPECIES	792	RPL10 (ENSPANG00000008309)	FLNA (ENSPANG00000025614)	ENSPANG00000046902 #16	SMIM9 (ENSPANG00000014914) #15	MPP1 (ENSPANG00000013144) #14	DKC1 (ENSPANG00000011978) #13	GAB3 (ENSPANG00000004006) #12	F8 (ENSPANG00000010602) #16	FUNDC2 (ENSPANG00000004381) ##17	CMC4 (ENSPANG00000017783) #18	MTCP1 (ENSPANG00000012244) #19	BRCC3 (ENSPANG00000010904) #20	RAB39B (ENSPANG00000008960) #23	TMLHE (ENSPANG00000024415) #27	CLIC2 (ENSPANG00000008414) #24	VBP1 (ENSPANG00000029954) #22	VAMP7 (ENSPANG00000015780) #29	IL9R (ENSPANG00000004380) #30
Cercopithecinae_d	ANCESTRAL SPECIES	196					ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000000950.c.b.d.a.d	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000018904.hb #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Drill	MODERN SPECIES	302							UPRT (ENSMLEG00000033879)	ENSMLEG00000024646	ZDHHC15 (ENSMLEG00000034065)	F8 (ENSMLEG00000034152) #16	ENSMLEG00000023479	FUNDC2 (ENSMLEG00000037506) ##17	CMC4 (ENSMLEG00000003457) #18	MTCP1 (ENSMLEG00000006517) #19	BRCC3 (ENSMLEG00000028598) #20	VBP1 (ENSMLEG00000022030) #22	ENSMLEG00000010058	RAB39B (ENSMLEG00000029019) #23	CLIC2 (ENSMLEG00000035692) #24
Sooty mangabey	MODERN SPECIES	417		ENSCATG00000015388 #11	ENSCATG00000015047	IKBKG (ENSCATG00000030712) #10	CTAG2 (ENSCATG00000028740) ##11	GAB3 (ENSCATG00000030384) #12	DKC1 (ENSCATG00000033602) #13	MPP1 (ENSCATG00000039189) #14	SMIM9 (ENSCATG00000029574) #15	ENSCATG00000030353	F8 (ENSCATG00000031608) #16	FUNDC2 (ENSCATG00000024236) ##17	MTCP1 (ENSCATG00000035622) #19	CMC4 (ENSCATG00000030790) #18	BRCC3 (ENSCATG00000021334) #20	VBP1 (ENSCATG00000028770) #22	ENSCATG00000016846	RAB39B (ENSCATG00000034919) #23	CLIC2 (ENSCATG00000030595) #24
Macaca	ANCESTRAL SPECIES	13	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000002566	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.hb #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Pig-tailed macaque	MODERN SPECIES	416						ENSMNEG00000016551	GAB3 (ENSMNEG00000036431) #12	DKC1 (ENSMNEG00000034503) #13	MPP1 (ENSMNEG00000040373) #14	SMIM9 (ENSMNEG00000038954) #15	F8 (ENSMNEG00000033339) #16	FUNDC2 (ENSMNEG00000017025) ##17	CMC4 (ENSMNEG00000039701) #18	MTCP1 (ENSMNEG00000041016) #19	BRCC3 (ENSMNEG00000032943) #20	VBP1 (ENSMNEG00000017547) #22	RAB39B (ENSMNEG00000030607) #23	CLIC2 (ENSMNEG00000030252) #24
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.b.b.b	ENSGT00530000063808.a #10	ENSGT00410000025802.h.a.a ##11	ENSGT00410000025802.h.a.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.e.b ##17	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.hb #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00510000049125 #30
Rhesus	MODERN SPECIES	327	DKC1 (ENSMMUG00000005768) #13	MPP1 (ENSMMUG00000005772) #14	ENSMMUG00000060911	SMIM9 (ENSMMUG00000062044) #15	F8 (ENSMMUG00000010245) #16	H2AB1 (ENSMMUG00000059127) #26	ENSMMUG00000009476 #25	FUNDC2 (ENSMMUG00000053499) ##17	ENSMMUG00000061897	CMC4 (ENSMMUG00000050298)	MTCP1 (ENSMMUG00000010251) #19	BRCC3 (ENSMMUG00000010253) ##20	ENSMMUG00000062127	ENSMMUG00000052111	ENSMMUG00000043981 #21	ENSMMUG00000015095 #22	RAB39B (ENSMMUG00000059069) #23	CLIC2 (ENSMMUG00000061009) #24	H2AB2 (ENSMMUG00000055745) #26	ENSMMUG00000058345 #25	TMLHE (ENSMMUG00000009481) #27	ENSMMUG00000061765	ENSMMUG00000064879	SPRY3 (ENSMMUG00000051319) #28	VAMP7 (ENSMMUG00000002015) #29	IL9R (ENSMMUG00000002016) #30	ENSMMUG00000032340	ENSMMUG00000063448
Crab-eating macaque	MODERN SPECIES	175	FAM50A (ENSMFAG00000021581)	PLXNA3 (ENSMFAG00000040837)	LAGE3 (ENSMFAG00000004038) ##11	UBL4A (ENSMFAG00000000884)	SLC10A3 (ENSMFAG00000035989) #7	FAM3A (ENSMFAG00000041814) #8	G6PD (ENSMFAG00000043207) #9	IKBKG (ENSMFAG00000032230) #10	ENSMFAG00000060522	F8 (ENSMFAG00000039948) #16	FUNDC2 (ENSMFAG00000038031) ##17	ENSMFAG00000045993	MTCP1 (ENSMFAG00000052287) #19	BRCC3 (ENSMFAG00000031106) #20	ENSMFAG00000056611 #21	VBP1 (ENSMFAG00000032032) #22	ENSMFAG00000058523	ENSMFAG00000050091	ENSMFAG00000064770	RAB39B (ENSMFAG00000036188) #23	ENSMFAG00000032659 #24	SPRY3 (ENSMFAG00000014963) #28	ENSMFAG00000053989	VAMP7 (ENSMFAG00000031038) #29	IL9R (ENSMFAG00000000235) #30
Vervet Monkey	MODERN SPECIES	203	G6PD (ENSCSAG00000006732) #9	IKBKG (ENSCSAG00000006727) #10	ENSCSAG00000006721 ##11	GAB3 (ENSCSAG00000006717) #12	DKC1 (ENSCSAG00000006706) #13	MPP1 (ENSCSAG00000006698) #14	SMIM9 (ENSCSAG00000006693) #15	F8 (ENSCSAG00000006668) #16	ENSCSAG00000000521 #26	ENSCSAG00000000520 #26	ENSCSAG00000000519 #25	FUNDC2 (ENSCSAG00000006563) ##17	CMC4 (ENSCSAG00000006553) #18	MTCP1 (ENSCSAG00000006547) #19	BRCC3 (ENSCSAG00000006538) #20	ENSCSAG00000006524 #22	RAB39B (ENSCSAG00000006507) #23	CLIC2 (ENSCSAG00000006505) #24	TMLHE (ENSCSAG00000006499) #27	SPRY3 (ENSCSAG00000000518) #28	VAMP7 (ENSCSAG00000006492) #29	IL9R (ENSCSAG00000006485) #30
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00530000063529.B	ENSGT00940000154103.b	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000164739	ENSGT00940000154746.h	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b.h	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.a.b.b	ENSGT00390000012916.h.a.a	ENSGT00390000004891	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000162993	ENSGT00390000018904.ib #22	ENSGT00940000163664	ENSGT00840000130063	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.e	ENSGT00390000001055	ENSGT00940000153097.B.a.b.f	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980	ENSGT00940000155877.i.a	ENSGT00940000159438	ENSGT00390000012692.f
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000155148.b.u	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000164739	ENSGT00940000154746.h	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b.h	ENSGT00950000182925.D.a.b.b	ENSGT00940000154672.t	ENSGT00950000182925.D.a.a.b.b	ENSGT00390000012916.h.a.a	ENSGT00390000004891	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000162993	ENSGT00390000018904.ib #22	ENSGT00940000163664	ENSGT00840000130063	ENSGT00940000153097.B.a.b.f.a.b	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.e	ENSGT00390000001055	ENSGT00940000153097.B.a.b.f.a.a	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162763	ENSGT00940000161795	ENSGT00940000162980	ENSGT00940000155877.i.a	ENSGT00940000159438
Macaca	ANCESTRAL SPECIES	13	ENSGT00390000012692.f	ENSGT00940000159438	ENSGT00940000155877.i.a	ENSGT00940000162980	ENSGT00940000161795	ENSGT00940000162763	ENSGT00950000182835.c.c	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00940000153097.B.a.b.f.a.a	ENSGT00390000001055	ENSGT00940000153097.B.a.b.e	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.f.a.b	ENSGT00840000130063	ENSGT00390000018904.ib #22	ENSGT00940000163664	ENSGT00940000162993	ENSGT00950000183031.B.e.a	ENSGT00940000161062	ENSGT00940000162603	ENSGT00390000004891	ENSGT00390000012916.h.a.a	ENSGT00950000182925.D.a.a.b.b	ENSGT00940000154672.t	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.b.a.a.b.h	ENSGT00940000162502	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000155148.b.u
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00390000012692.f	ENSGT00940000159438	ENSGT00940000155877.i.a	ENSGT00940000162980	ENSGT00940000161795	ENSGT00940000162763	ENSGT00950000182835.c.c	ENSGT00530000063540.a	ENSGT00940000159912	ENSGT00940000153097.B.a.b.f.a.a	ENSGT00390000001055	ENSGT00940000153097.B.a.b.e	ENSGT00940000153097.B.a.a	ENSGT00940000153097.B.a.b.f.a.b	ENSGT00840000130063	ENSGT00390000018904.ib #22	ENSGT00940000163664	ENSGT00940000162993	ENSGT00950000183031.B.e.a	ENSGT00940000161062	ENSGT00940000162603	ENSGT00390000012916.h.a.a	ENSGT00950000182925.D.a.b.b	ENSGT00950000182925.D.a.b.a.a.b.h.a	ENSGT00950000182925.D.a.b.a.a.b.h.b	ENSGT00940000162502	ENSGT00940000162988	ENSGT00950000182925.D.a.b.a.b	ENSGT00940000163337.a.a.a.a	ENSGT00940000155148.b.u	ENSGT00940000154103.b
Rhesus	MODERN SPECIES	327	ENSMMUG00000058922	ENSMMUG00000051670	ENSMMUG00000019432	FAAH2 (ENSMMUG00000016725)	ENSMMUG00000058470	ENSMMUG00000016045	SPIN3 (ENSMMUG00000063849)	UBQLN2 (ENSMMUG00000042087)	KLF8 (ENSMMUG00000014678)	ENSMMUG00000063731	ENSMMUG00000062132	ENSMMUG00000062445	ENSMMUG00000053644	RRAGB (ENSMMUG00000017635)	FOXR2 (ENSMMUG00000061763)	ENSMMUG00000042926 #22	USP51 (ENSMMUG00000052760)	MAGEH1 (ENSMMUG00000046259)	ENSMMUG00000060530	PAGE3 (ENSMMUG00000010324)	FAM104B (ENSMMUG00000059922)	ENSMMUG00000053924	ENSMMUG00000045847	APEX2 (ENSMMUG00000008428)	PFKFB1 (ENSMMUG00000008425)	TRO (ENSMMUG00000008422)	ALAS2 (ENSMMUG00000008429)	MAGED2 (ENSMMUG00000007345)	ITIH6 (ENSMMUG00000007339)	GNL3L (ENSMMUG00000008231)	FGD1 (ENSMMUG00000012613)
Vervet Monkey	MODERN SPECIES	203	ASB12 (ENSCSAG00000012044)	AMER1 (ENSCSAG00000000112)	ARHGEF9 (ENSCSAG00000012051)	SPIN4 (ENSCSAG00000000113)	ENSCSAG00000000114	FAAH2 (ENSCSAG00000012061)	ENSCSAG00000000115	ENSCSAG00000012068	ENSCSAG00000000116	SPIN3 (ENSCSAG00000000117)	UBQLN2 (ENSCSAG00000000118)	KLF8 (ENSCSAG00000012078)	ENSCSAG00000000119	RRAGB (ENSCSAG00000012089)	FOXR2 (ENSCSAG00000000120)	ENSCSAG00000000121 #22	USP51 (ENSCSAG00000000122)	MAGEH1 (ENSCSAG00000000123)	ENSCSAG00000012094	PAGE3 (ENSCSAG00000012096)	FAM104B (ENSCSAG00000012104)	ALAS2 (ENSCSAG00000012117)	APEX2 (ENSCSAG00000012124)	PFKFB1 (ENSCSAG00000012140)	TRO (ENSCSAG00000012194)	MAGED2 (ENSCSAG00000012266)	ITIH6 (ENSCSAG00000012306)	ENSCSAG00000000124	GNL3L (ENSCSAG00000012324)	FGD1 (ENSCSAG00000012335)	ENSCSAG00000012366
Rhinopithecus	ANCESTRAL SPECIES	835																ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Black snub-nosed monkey	MODERN SPECIES	994																VBP1 (ENSRBIG00000035358) #22	RAB39B (ENSRBIG00000031945) #23
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2520																VBP1 (ENSRROG00000043789) #22	RAB39B (ENSRROG00000000340) #23	CLIC2 (ENSRROG00000044913) #24
Golden snub-nosed monkey	MODERN SPECIES	3076																ENSRROG00000039413 #22
Tarsier	DUPLICATION
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6941										F8 (ENSTSYG00000014405) #16	FUNDC2 (ENSTSYG00000036522) #17	CMC4 (ENSTSYG00000035254) #18	MTCP1 (ENSTSYG00000031651) #19	BRCC3 (ENSTSYG00000006632) ##20	ENSTSYG00000029520	VBP1 (ENSTSYG00000002205) #22	RAB39B (ENSTSYG00000030186) #23	CLIC2 (ENSTSYG00000029016) #24
Tarsier	MODERN SPECIES	4286													CCBE1 (ENSTSYG00000004742)	LMAN1 (ENSTSYG00000011817)	CPLX4 (ENSTSYG00000028715)	ENSTSYG00000032175 #22	GRP (ENSTSYG00000007549)	SEC11C (ENSTSYG00000032673)	ZNF532 (ENSTSYG00000032472)
Tarsier	MODERN SPECIES	4004	LIMK2 (ENSTSYG00000006595)	RNF185 (ENSTSYG00000003045)	PLA2G3 (ENSTSYG00000001374)	INPP5J (ENSTSYG00000028578)	SELENOM (ENSTSYG00000036202)	SMTN (ENSTSYG00000035224)	MORC2 (ENSTSYG00000013123)	OSBP2 (ENSTSYG00000005447)	CUNH5orf52 (ENSTSYG00000026560)	SLC35E4 (ENSTSYG00000036314)	TCN2 (ENSTSYG00000013936)	PES1 (ENSTSYG00000009798)	GAL3ST1 (ENSTSYG00000031547)	SEC14L6 (ENSTSYG00000032403)	SEC14L4 (ENSTSYG00000004289)	ENSTSYG00000028758 #22	SEC14L3 (ENSTSYG00000000647)	MTFP1 (ENSTSYG00000001092)	SEC14L2 (ENSTSYG00000001077)	RNF215 (ENSTSYG00000036482)	CCDC157 (ENSTSYG00000013986)	SF3A1 (ENSTSYG00000004739)	TBC1D10A (ENSTSYG00000028455)	CASTOR1 (ENSTSYG00000030880)	OSM (ENSTSYG00000035548)	LIF (ENSTSYG00000031653)
Strepsirrhini	ANCESTRAL SPECIES	55			ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000000360.r.a.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Bushbaby	MODERN SPECIES	374						GAB3 (ENSOGAG00000010477) #12	DKC1 (ENSOGAG00000003399) #13	MPP1 (ENSOGAG00000003402) #14	F8 (ENSOGAG00000005241) #16	ENSOGAG00000034494 #25	FUNDC2 (ENSOGAG00000033461) #17	CMC4 (ENSOGAG00000027720) #18	MTCP1 (ENSOGAG00000005252) #19	ENSOGAG00000005255 ##20	ENSOGAG00000029432 #21	VBP1 (ENSOGAG00000016566) #22	RAB39B (ENSOGAG00000025424) #23	ENSOGAG00000034308 #25	SPRY3 (ENSOGAG00000001824) #28	VAMP7 (ENSOGAG00000030896) #29
Lemuriformes	ANCESTRAL SPECIES	93					ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Mouse lemur	MODERN SPECIES	169	ENSMICG00000002818 #13	MPP1 (ENSMICG00000002828) #14	SMIM9 (ENSMICG00000043321) #15	ENSMICG00000048060	ENSMICG00000009653	ENSMICG00000037635	F8 (ENSMICG00000029671) #16	ENSMICG00000007052	ENSMICG00000046481 #25	ENSMICG00000036428 #25	ENSMICG00000047033	ENSMICG00000028940 #17	CMC4 (ENSMICG00000046262) #18	MTCP1 (ENSMICG00000037190) #19	BRCC3 (ENSMICG00000036150) ##20	VBP1 (ENSMICG00000033175) #22	RAB39B (ENSMICG00000044410) #23	TMLHE (ENSMICG00000010663) #27	ENSMICG00000036554	ENSMICG00000030636	ENSMICG00000036449	ENSMICG00000027801	ENSMICG00000043875	ARHGEF9 (ENSMICG00000007135)	ENSMICG00000028484	ENSMICG00000032959	VAMP7 (ENSMICG00000001581) #29	LDOC1 (ENSMICG00000034780)	ENSMICG00000017029	ENSMICG00000034247	SLITRK4 (ENSMICG00000036015)
Lemuriformes_a	ANCESTRAL SPECIES	206					ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Greater bamboo lemur	MODERN SPECIES	1606																VBP1 (ENSPSMG00000020000) #22	RAB39B (ENSPSMG00000019949) #23	CLIC2 (ENSPSMG00000019936) #24
Coquerels sifaka	MODERN SPECIES	863			GAB3 (ENSPCOG00000023755) #12	ENSPCOG00000015802	DKC1 (ENSPCOG00000026874) #13	MPP1 (ENSPCOG00000006163) #14	SMIM9 (ENSPCOG00000024173) #15	ENSPCOG00000025344 #26	ENSPCOG00000001067 #25	F8 (ENSPCOG00000022504) #16	FUNDC2 (ENSPCOG00000015705) #17	CMC4 (ENSPCOG00000024860) #18	MTCP1 (ENSPCOG00000018892) #19	ENSPCOG00000025743	BRCC3 (ENSPCOG00000010400) ##20	VBP1 (ENSPCOG00000019297) #22	RAB39B (ENSPCOG00000013225) #23	CLIC2 (ENSPCOG00000012095) #24
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT01050000244815.B.a.a	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Tree shrew	MODERN SPECIES	2742																VBP1 (ENSTBEG00000007833) #22	RAB39B (ENSTBEG00000008074) #23	CLIC2 (ENSTBEG00000008127) #24
Glires	ANCESTRAL SPECIES	10	ENSGT01050000244815.B.a.a	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Lagomorpha	ANCESTRAL SPECIES	188							ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.c.b #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	516			ENSOCUG00000024391	ENSOCUG00000032744	ENSOCUG00000022276	GAB3 (ENSOCUG00000001360) #12	DKC1 (ENSOCUG00000012646) #13	MPP1 (ENSOCUG00000012660) #14	ENSOCUG00000036130	F8 (ENSOCUG00000000142) #16	FUNDC2 (ENSOCUG00000024176) #17	ENSOCUG00000027749 #18	MTCP1 (ENSOCUG00000009720) #19	BRCC3 (ENSOCUG00000009730) ##20	ENSOCUG00000023330 #21	ENSOCUG00000017448 #22	RAB39B (ENSOCUG00000004254) #23	ENSOCUG00000037631	CLIC2 (ENSOCUG00000007480) #24	ENSOCUG00000024947 #26	TMLHE (ENSOCUG00000008669) #27	SPRY3 (ENSOCUG00000022218) #28	ENSOCUG00000001270 #29
Rabbit	MODERN SPECIES	9	SLC16A9 (ENSOCUG00000013648)	FAM13C (ENSOCUG00000001543)	PHYHIPL (ENSOCUG00000001539)	BICC1 (ENSOCUG00000013696)	TFAM (ENSOCUG00000014405)	ENSOCUG00000036397	CISD1 (ENSOCUG00000002949)	IPMK (ENSOCUG00000006432)	ENSOCUG00000033571	ENSOCUG00000008290	ENSOCUG00000033494	ZWINT (ENSOCUG00000006806)	ENSOCUG00000038084	PCDH15 (ENSOCUG00000000268)	ENSOCUG00000023765	ENSOCUG00000027170 #22	MBL2 (ENSOCUG00000012742)	DKK1 (ENSOCUG00000011487)	PRKG1 (ENSOCUG00000011473)	ENSOCUG00000027463	A1CF (ENSOCUG00000011587)	ENSOCUG00000017169	SGMS1 (ENSOCUG00000010965)	ENSOCUG00000035355	PAPSS2 (ENSOCUG00000012078)	ENSOCUG00000034817	ATAD1 (ENSOCUG00000012082)	PTEN (ENSOCUG00000008774)	RNLS (ENSOCUG00000010512)	LIPJ (ENSOCUG00000029546)	LIPF (ENSOCUG00000012478)
Rodentia	ANCESTRAL SPECIES	10	ENSGT01050000244815.B.a.a	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	357															ENSDORG00000024355 #22	ENSDORG00000024775 #22	Zbtb33 (ENSDORG00000023347)	Tmem255a (ENSDORG00000009805)	Atp1b4 (ENSDORG00000010554)	ENSDORG00000023555	Lamp2 (ENSDORG00000006433)	Cul4b (ENSDORG00000012005)	Mcts1 (ENSDORG00000027394)	C1galt1c1 (ENSDORG00000027468)	Gria3 (ENSDORG00000003484)	ENSDORG00000027486	ENSDORG00000027353	Xiap (ENSDORG00000010762)	Stag2 (ENSDORG00000003109)	Sh2d1a (ENSDORG00000012131)	Tenm1 (ENSDORG00000012135)
Kangaroo rat	MODERN SPECIES	357																ENSDORG00000024355 #22	ENSDORG00000024775 #22	Zbtb33 (ENSDORG00000023347)	Tmem255a (ENSDORG00000009805)	Atp1b4 (ENSDORG00000010554)	ENSDORG00000023555	Lamp2 (ENSDORG00000006433)	Cul4b (ENSDORG00000012005)	Mcts1 (ENSDORG00000027394)	C1galt1c1 (ENSDORG00000027468)	Gria3 (ENSDORG00000003484)	ENSDORG00000027486	ENSDORG00000027353	Xiap (ENSDORG00000010762)	Stag2 (ENSDORG00000003109)	Sh2d1a (ENSDORG00000012131)
Kangaroo rat	MODERN SPECIES	320	Pikfyve (ENSDORG00000005745)	Pth2r (ENSDORG00000005747)	ENSDORG00000028731	ENSDORG00000029050	ENSDORG00000014386	Map2 (ENSDORG00000005837)	Unc80 (ENSDORG00000005840)	Rpe (ENSDORG00000005846)	Kansl1l (ENSDORG00000005847)	Acadl (ENSDORG00000005849)	ENSDORG00000024057	Myl1 (ENSDORG00000027836)	Lancl1 (ENSDORG00000009233)	Cps1 (ENSDORG00000007835)	Erbb4 (ENSDORG00000013025)	ENSDORG00000023387 #22	ENSDORG00000028919	Ikzf2 (ENSDORG00000007539)	ENSDORG00000025882	Vwc2l (ENSDORG00000010438)	ENSDORG00000015439	Abca12 (ENSDORG00000005459)	Atic (ENSDORG00000010127)	ENSDORG00000028093	ENSDORG00000023313	Mreg (ENSDORG00000008365)	Pecr (ENSDORG00000015456)	Tmem169 (ENSDORG00000011415)	Xrcc5 (ENSDORG00000011417)	Marchf4 (ENSDORG00000002802)	Smarcal1 (ENSDORG00000013944)
Kangaroo rat	MODERN SPECIES	526	Slc10a3 (ENSDORG00000005197) #7	Fam3a (ENSDORG00000025173) #8	ENSDORG00000012731 #9	Ikbkg (ENSDORG00000028140) #10	ENSDORG00000000625 ##11	Gab3 (ENSDORG00000006809) #12	ENSDORG00000013566 #13	Mpp1 (ENSDORG00000013568) #14	ENSDORG00000024019	F8 (ENSDORG00000013155) #16	ENSDORG00000028874	Fundc2 (ENSDORG00000013156) #17	Mtcp1 (ENSDORG00000013159) #19	ENSDORG00000029487 #18	ENSDORG00000013161 ##20	ENSDORG00000004628 #22	Rab39b (ENSDORG00000029496) #23	F8a (ENSDORG00000028723) #25	ENSDORG00000014658 #27	ENSDORG00000026230 #29
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	196	ENSJJAG00000005317	Rph3a (ENSJJAG00000022547)	ENSJJAG00000017647	ENSJJAG00000016775	ENSJJAG00000016688	Hectd4 (ENSJJAG00000014580)	ENSJJAG00000013034	ENSJJAG00000012893	Erp29 (ENSJJAG00000012814)	ENSJJAG00000012636	Tmem116 (ENSJJAG00000001140)	ENSJJAG00000000141	Aldh2 (ENSJJAG00000024048)	ENSJJAG00000023508	Brap (ENSJJAG00000023208)	ENSJJAG00000022969 #22	ENSJJAG00000022812	Sh2b3 (ENSJJAG00000022530)	ENSJJAG00000022371	Pheta1 (ENSJJAG00000022209)	Cux2 (ENSJJAG00000021345)	Myl2 (ENSJJAG00000019617)	ENSJJAG00000019211	Ppp1cc (ENSJJAG00000018707)	Hvcn1 (ENSJJAG00000018196)	Tctn1 (ENSJJAG00000017889)	Pptc7 (ENSJJAG00000013648)	Rad9b (ENSJJAG00000011599)	ENSJJAG00000010799	Fam216a (ENSJJAG00000007023)	Gpn3 (ENSJJAG00000005601)
Lesser Egyptian jerboa	MODERN SPECIES	177	Mrpl30 (ENSJJAG00000006196)	Lyg2 (ENSJJAG00000005225)	Lyg1 (ENSJJAG00000001060)	Txndc9 (ENSJJAG00000021906)	ENSJJAG00000016442	Rev1 (ENSJJAG00000015493)	Aff3 (ENSJJAG00000013155)	Zc3h8 (ENSJJAG00000002355)	ENSJJAG00000022170	Zc3h6 (ENSJJAG00000013206)	Ttl (ENSJJAG00000011686)	Polr1b (ENSJJAG00000000143)	Chchd5 (ENSJJAG00000020591)	ENSJJAG00000020382	ENSJJAG00000014037	ENSJJAG00000011515 #22	Ckap2l (ENSJJAG00000010727)	Il1a (ENSJJAG00000010242)	Il1b (ENSJJAG00000007645)	Il36g (ENSJJAG00000001783)	ENSJJAG00000001509	Il36rn (ENSJJAG00000017029)	Il1f10 (ENSJJAG00000015403)	Il1rn (ENSJJAG00000013921)	Psd4 (ENSJJAG00000006466)	Pax8 (ENSJJAG00000001232)
Lesser Egyptian jerboa	MODERN SPECIES	248								Gab3 (ENSJJAG00000010656) #12	ENSJJAG00000010086 #13	Mpp1 (ENSJJAG00000009953) #14	F8 (ENSJJAG00000003754) #16	Fundc2 (ENSJJAG00000000632) #17	Cmc4 (ENSJJAG00000018410) #18	Mtcp1 (ENSJJAG00000018300) #19	ENSJJAG00000017846 ##20	ENSJJAG00000017143 #22	Rab39b (ENSJJAG00000016977) #23	ENSJJAG00000016928 #24	ENSJJAG00000016876 #27	ENSJJAG00000016767 #28	ENSJJAG00000016374	ENSJJAG00000016041 #29
Lesser Egyptian jerboa	MODERN SPECIES	81	ENSJJAG00000010770	Epha1 (ENSJJAG00000021813)	Zyx (ENSJJAG00000016066)	Casp2 (ENSJJAG00000008256)	Tmem139 (ENSJJAG00000014062)	ENSJJAG00000012066	Tas2r144 (ENSJJAG00000017432)	Trpv5 (ENSJJAG00000020226)	Trpv6 (ENSJJAG00000010273)	Ephb6 (ENSJJAG00000015598)	ENSJJAG00000007203	ENSJJAG00000013742	Prss59 (ENSJJAG00000020845)	Moxd2 (ENSJJAG00000011768)	ENSJJAG00000017582	ENSJJAG00000013568 #22	Clec5a (ENSJJAG00000017338)	Ssbp1 (ENSJJAG00000016282)	ENSJJAG00000001577	Wee2 (ENSJJAG00000022003)	ENSJJAG00000014217	ENSJJAG00000016723	Braf (ENSJJAG00000020559)	ENSJJAG00000000905	Dennd2a (ENSJJAG00000017109)	ENSJJAG00000010761	Rab19 (ENSJJAG00000015955)	Slc37a3 (ENSJJAG00000019794)	Parp12 (ENSJJAG00000019161)	Tbxas1 (ENSJJAG00000020954)	Hipk2 (ENSJJAG00000019253)
Muroidea	ANCESTRAL SPECIES	13	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Upper Galilee mountains blind mole rat	MODERN SPECIES	1181							ENSNGAG00000009939	Gab3 (ENSNGAG00000003725) #12	ENSNGAG00000015724 #13	Mpp1 (ENSNGAG00000017947) #14	F8 (ENSNGAG00000013455) #16	Fundc2 (ENSNGAG00000017968) #17	Cmc4 (ENSNGAG00000019649) #18	Mtcp1 (ENSNGAG00000020777) #19	ENSNGAG00000000120 ##20	Vbp1 (ENSNGAG00000013672) #22	Rab39b (ENSNGAG00000000596) #23	ENSNGAG00000001653 #24	F8a (ENSNGAG00000011651) #25	ENSNGAG00000012650 #27	ENSNGAG00000015269 #28	ENSNGAG00000016000 #29
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f.db.b #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f.db.b #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Prairie vole	MODERN SPECIES	168	Fam3a (ENSMOCG00000016025) #8	ENSMOCG00000015421 #9	Ikbkg (ENSMOCG00000011244) #10	ENSMOCG00000017711 ##11	Or7r1 (ENSMOCG00000002349)	Gab3 (ENSMOCG00000015626) #12	ENSMOCG00000001169 #13	Mpp1 (ENSMOCG00000000082) #14	Smim9 (ENSMOCG00000003619) #15	ENSMOCG00000001114	F8 (ENSMOCG00000006178) #16	Fundc2 (ENSMOCG00000013641) #17	Mtcp1 (ENSMOCG00000002450) #19	Cmc4 (ENSMOCG00000019858) #18	ENSMOCG00000000841 ##20	Vbp1 (ENSMOCG00000013440) #22	Rab39b (ENSMOCG00000006994) #23	ENSMOCG00000012583 #27	ENSMOCG00000003592 #28	ENSMOCG00000015068	ENSMOCG00000012849 #29	ENSMOCG00000019973
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000029875 ##11	ENSPEMG00000027888 ##11	ENSPEMG00000026245 ##11	Or7r1 (ENSPEMG00000009130)	Or13ae2 (ENSPEMG00000025767)	Gab3 (ENSPEMG00000012634) #12	Dkc1 (ENSPEMG00000013348) #13	ENSPEMG00000022395	Mpp1 (ENSPEMG00000014261) #14	Smim9 (ENSPEMG00000010945) #15	F8 (ENSPEMG00000014119) #16	ENSPEMG00000026725 #17	Cmc4 (ENSPEMG00000024388) #18	Mtcp1 (ENSPEMG00000030977) #19	Brcc3 (ENSPEMG00000014353) ##20	Vbp1 (ENSPEMG00000004677) #22	Rab39b (ENSPEMG00000029552) #23	ENSPEMG00000029793 #24	ENSPEMG00000014227 #27	ENSPEMG00000000399 #28	ENSPEMG00000008468 #29	ENSPEMG00000017331	Ct55 (ENSPEMG00000000280)	ENSPEMG00000024706	ENSPEMG00000029185	ENSPEMG00000027347
Cricetinae	ANCESTRAL SPECIES	46	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f.db.b #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	16	Fam3a (ENSCGRG00001017590) #8	G6PDH (ENSCGRG00001009805) #9	Ikbkg (ENSCGRG00001023852) #10	Or7r1 (ENSCGRG00001002331)	ENSCGRG00001018213	ENSCGRG00001000852 ##11	Gab3 (ENSCGRG00001024780) #12	ENSCGRG00001014574 #13	Mpp1 (ENSCGRG00001000334) #14	Smim9 (ENSCGRG00001020847) #15	F8 (ENSCGRG00001018172) #16	Fundc2 (ENSCGRG00001005074) #17	Cmc4 (ENSCGRG00001024106) #18	Mtcp1 (ENSCGRG00001021448) #19	Brcc3 (ENSCGRG00001000059) ##20	ENSCGRG00001012855 #22	Rab39b (ENSCGRG00001022502) #23	ENSCGRG00001011867 #27	ENSCGRG00001004214 #28	ENSCGRG00001005752 #29
Chinese hamster chok1gshd	MODERN SPECIES	299							ENSCGRG00001017101	ENSCGRG00001015403	Rnls (ENSCGRG00001012669)	ENSCGRG00001011824	Atad1 (ENSCGRG00001009686)	Papss2 (ENSCGRG00001019072)	Minpp1 (ENSCGRG00001016154)	Fgfbp3 (ENSCGRG00001015712)	Tnks2 (ENSCGRG00001008529)	ENSCGRG00001013440 #22	Ppp1r3c (ENSCGRG00001019196)	Hectd2 (ENSCGRG00001015774)	Pcgf5 (ENSCGRG00001010288)	Ankrd1 (ENSCGRG00001019357)	ENSCGRG00001017068	Htr7 (ENSCGRG00001006968)	Kif20b (ENSCGRG00001019586)	Pank1 (ENSCGRG00001016193)	Slc16a12 (ENSCGRG00001013278)	ENSCGRG00001012991	Ifit1 (ENSCGRG00001009709)	Ifit2 (ENSCGRG00001008403)	ENSCGRG00001012858	ENSCGRG00001018062	Lipa (ENSCGRG00001017679)
Chinese hamster chok1gshd	MODERN SPECIES	111	Exo5 (ENSCGRG00001006191)	Rims3 (ENSCGRG00001020274)	Nfyc (ENSCGRG00001012554)	Kcnq4 (ENSCGRG00001015701)	Cited4 (ENSCGRG00001010621)	Ctps (ENSCGRG00001025038)	Slfnl1 (ENSCGRG00001004308)	Scmh1 (ENSCGRG00001019038)	Foxo6 (ENSCGRG00001020370)	Edn2 (ENSCGRG00001024277)	Hivep3 (ENSCGRG00001024833)	ENSCGRG00001018314	Guca2b (ENSCGRG00001019230)	Guca2a (ENSCGRG00001020375)	Foxj3 (ENSCGRG00001024073)	ENSCGRG00001005285 #22	Rimkla (ENSCGRG00001011564)	Zmynd12 (ENSCGRG00001013189)	Ppcs (ENSCGRG00001013754)	Ccdc30 (ENSCGRG00001015266)	ENSCGRG00001018996	ENSCGRG00001024101	ENSCGRG00001002534	Cldn19 (ENSCGRG00001003612)	P3h1 (ENSCGRG00001014713)	AU022252 (ENSCGRG00001023179)	Tmem269 (ENSCGRG00001023367)	Svbp (ENSCGRG00001019425)	Ermap (ENSCGRG00001021027)	ENSCGRG00001006325	Slc2a1 (ENSCGRG00001024604)
Golden Hamster	MODERN SPECIES	891						ENSMAUG00000006516	Gab3 (ENSMAUG00000000113) #12	Dkc1 (ENSMAUG00000016454) #13	ENSMAUG00000000280 #14	Smim9 (ENSMAUG00000018168) #15	F8 (ENSMAUG00000017844) #16	Fundc2 (ENSMAUG00000013769) #17	Mtcp1 (ENSMAUG00000013746) #19	Cmc4 (ENSMAUG00000012104) #18	Brcc3 (ENSMAUG00000017183) ##20	Vbp1 (ENSMAUG00000012627) #22	Rab39b (ENSMAUG00000011701) #23	ENSMAUG00000011862 #27	ENSMAUG00000010073 #28	ENSMAUG00000000133 #29
Murinae	ANCESTRAL SPECIES	14	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000016992 #25	ENSGT00390000000062.x.b.k.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23
Mus	ANCESTRAL SPECIES	9	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a.o #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00950000183097.a.a.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.a	ENSGT00940000153421.a.a.a.a.b	ENSGT00940000159832	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT00940000163515.j	ENSGT00940000158538	ENSGT00940000163515.i	ENSGT00940000159699	ENSGT00940000162825	ENSGT00530000063484.b.b	ENSGT00940000158553.b.a	ENSGT00720000109445
Mus_A	ANCESTRAL SPECIES	15	ENSGT00410000025802.g.b.q.a ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000000062.x.b.k.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00950000183097.a.a.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.a	ENSGT00940000153421.a.a.a.a.b	ENSGT00940000159832	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT00940000163515.j	ENSGT00940000158538	ENSGT00940000163515.i	ENSGT00940000159699	ENSGT00940000162825	ENSGT00530000063484.b.b	ENSGT00940000158553.b.a	ENSGT00720000109445
Mus_B	ANCESTRAL SPECIES	14	ENSGT00530000063435.a.o #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000001700.a.b.b.o.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00950000183097.a.a.a	ENSGT00390000005717.e.b.b.a.e.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.a	ENSGT00940000153421.a.a.a.a.b	ENSGT00940000159832	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.f.b	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.b.e	ENSGT00940000163515.j	ENSGT00940000158538	ENSGT00940000163515.i	ENSGT00940000159699	ENSGT00940000162825	ENSGT00530000063484.b.b
Mus_C	ANCESTRAL SPECIES	27	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a.o #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.q.a ##11	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b.a.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00950000183097.a.a.a	ENSGT00390000005717.e.b.b.a.e.a	ENSGT00390000005717.e.b.b.b	ENSGT00390000005717.e.b.a
spretus	MODERN SPECIES	19	Ikbkg (MGP_SPRETEiJ_G0034342) #10	G6pdx (MGP_SPRETEiJ_G0034343) #9	MGP_SPRETEiJ_G0034344 ##11	Or7r1 (MGP_SPRETEiJ_G0034345)	Or13ae2 (MGP_SPRETEiJ_G0034346)	MGP_SPRETEiJ_G0034347	MGP_SPRETEiJ_G0034348 ##11	Dkc1 (MGP_SPRETEiJ_G0034351) #13	Mpp1 (MGP_SPRETEiJ_G0034352) #14	Smim9 (MGP_SPRETEiJ_G0034353) #15	F8 (MGP_SPRETEiJ_G0034354) #16	Fundc2 (MGP_SPRETEiJ_G0034355) #17	Cmc4 (MGP_SPRETEiJ_G0034356) #18	Mtcp1 (MGP_SPRETEiJ_G0034357) #19	Brcc3 (MGP_SPRETEiJ_G0034358) ##20	Vbp1 (MGP_SPRETEiJ_G0034359) #22	Rab39b (MGP_SPRETEiJ_G0034360) #23	Pls3 (MGP_SPRETEiJ_G0034361)	MGP_SPRETEiJ_G0034362	MGP_SPRETEiJ_G0034363	MGP_SPRETEiJ_G0034364	Cldn34b4 (MGP_SPRETEiJ_G0034365)	Cldn34d (MGP_SPRETEiJ_G0034366)	Tbl1x (MGP_SPRETEiJ_G0034367)	Prkx (MGP_SPRETEiJ_G0034368)	MGP_SPRETEiJ_G0034369	MGP_SPRETEiJ_G0034370	MGP_SPRETEiJ_G0034371	4930480E11Rik (MGP_SPRETEiJ_G0034372)	Prrg1 (MGP_SPRETEiJ_G0034373)	Fam47c (MGP_SPRETEiJ_G0034374)
Steppe mouse	MODERN SPECIES	1452																Vbp1 (ENSMSIG00000016065) #22	Rab39b (ENSMSIG00000016050) #23
Mouse	MODERN SPECIES	37	Ctag2l1 (ENSMUSG00000079536) ##11	Or7r1 (ENSMUSG00000043715)	Or13ae2 (ENSMUSG00000051706)	Pwwp4c (ENSMUSG00000079534)	Ctag2l2 (ENSMUSG00000079532) ##11	Pwwp4d (ENSMUSG00000079531)	Gab3 (ENSMUSG00000032750) #12	Dkc1 (ENSMUSG00000031403) #13	Mpp1 (ENSMUSG00000031402) #14	Smim9 (ENSMUSG00000073094) #15	F8 (ENSMUSG00000031196) #16	Fundc2 (ENSMUSG00000031198) #17	Cmc4 (ENSMUSG00000090110) #18	Mtcp1 (ENSMUSG00000031200) #19	Brcc3 (ENSMUSG00000031201) ##20	Vbp1 (ENSMUSG00000031197) #22	Rab39b (ENSMUSG00000031202) #23	Pls3 (ENSMUSG00000016382)	Cldn34b3 (ENSMUSG00000071738)	Cldn34b4 (ENSMUSG00000073085)	Cldn34d (ENSMUSG00000079525)	Tbl1x (ENSMUSG00000025246)	Prkx (ENSMUSG00000035725)	Pbsn (ENSMUSG00000000003)	Gm14744 (ENSMUSG00000079522)	5430402E10Rik (ENSMUSG00000044121)	Obp1a (ENSMUSG00000067684)	Gm5938 (ENSMUSG00000079521)	Obp1b (ENSMUSG00000067679)	Gm14743 (ENSMUSG00000079519)	4930480E11Rik (ENSMUSG00000035651)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Hystricomorpha	ANCESTRAL SPECIES	54	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000000360.r.a.a ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000000242	ENSHGLG00000037767	NWD2 (ENSHGLG00000000298)	ENSHGLG00000040844	ENSHGLG00000040492	ENSHGLG00000043452	PGM2 (ENSHGLG00000001842)	ENSHGLG00000002323	ENSHGLG00000003063	ENSHGLG00000000606	ENSHGLG00000019811	ENSHGLG00000033549	ENSHGLG00000034348	ENSHGLG00000043517	ENSHGLG00000044532	ENSHGLG00000019798 #22	KLF3 (ENSHGLG00000049437)	ENSHGLG00000000855	ENSHGLG00000019856	ENSHGLG00000001742	TLR6 (ENSHGLG00000050436)	FAM114A1 (ENSHGLG00000002258)	TMEM156 (ENSHGLG00000002626)	ENSHGLG00000033489	KLHL5 (ENSHGLG00000001944)	WDR19 (ENSHGLG00000002756)	ENSHGLG00000002546	ENSHGLG00000032109	KLB (ENSHGLG00000002389)	ENSHGLG00000002318	LIAS (ENSHGLG00000002264)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000049566	ENSHGLG00000046464	ENSHGLG00000049532	ENSHGLG00000000701 #12	DKC1 (ENSHGLG00000000649) #13	MPP1 (ENSHGLG00000000629) #14	ENSHGLG00000000581 #26	F8 (ENSHGLG00000034300) #16	ENSHGLG00000048533	ENSHGLG00000037924 #25	ENSHGLG00000035621 #16	FUNDC2 (ENSHGLG00000001278) #17	MTCP1 (ENSHGLG00000001243) #19	ENSHGLG00000001061 ##20	ENSHGLG00000047377	VBP1 (ENSHGLG00000044108) #22	RAB39B (ENSHGLG00000036840) #23	ENSHGLG00000043926 #24	TMLHE (ENSHGLG00000000101) #27	ENSHGLG00000040623 #28	ENSHGLG00000033454	ENSHGLG00000040335	ENSHGLG00000046871 #29	ENSHGLG00000045337	CNGA2 (ENSHGLG00000002074)	PRRG3 (ENSHGLG00000042836)	ENSHGLG00000043691	ENSHGLG00000040679	ENSHGLG00000019897	VMA21 (ENSHGLG00000037060)	ENSHGLG00000047782
Naked mole-rat female	MODERN SPECIES		SGK1 (ENSHGLG00000000909)	ENSHGLG00000019010	SLC2A12 (ENSHGLG00000000953)	ENSHGLG00000046831	TCF21 (ENSHGLG00000035092)	ENSHGLG00000040407	ENSHGLG00000032159	ENSHGLG00000003172	ENSHGLG00000035822	CEP85L (ENSHGLG00000003335)	PLN (ENSHGLG00000050941)	MCM9 (ENSHGLG00000002805)	ENSHGLG00000039943	FAM184A (ENSHGLG00000002320)	MAN1A1 (ENSHGLG00000002233)	ENSHGLG00000002141 #22	ENSHGLG00000001744	TBC1D32 (ENSHGLG00000001631)	GJA1 (ENSHGLG00000047888)	ENSHGLG00000032930	HSF2 (ENSHGLG00000000864)	SERINC1 (ENSHGLG00000035221)	ENSHGLG00000036667	FABP7 (ENSHGLG00000001824)	SMPDL3A (ENSHGLG00000001781)	CLVS2 (ENSHGLG00000001622)	TRDN (ENSHGLG00000001423)	ENSHGLG00000032242	ENSHGLG00000001275	ENSHGLG00000044736	ENSHGLG00000033903
Hystricomorpha_a	ANCESTRAL SPECIES	61	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000000360.r.a.a ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Hystricomorpha_b	ANCESTRAL SPECIES	120						ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00390000000360.r.a.a ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Degu	DUPLICATION
Degu	MODERN SPECIES	409							GAB3 (ENSODEG00000000525) #12	ENSODEG00000000549 #13	MPP1 (ENSODEG00000000590) #14	F8 (ENSODEG00000000713) #16	ENSODEG00000000342 #17	CMC4 (ENSODEG00000000352) #18	MTCP1 (ENSODEG00000000367) #19	BRCC3 (ENSODEG00000000422) ##20	ENSODEG00000000490	ENSODEG00000000509 #22	RAB39B (ENSODEG00000000520) #23	CLIC2 (ENSODEG00000000532) #24
Degu	MODERN SPECIES	320	ENSODEG00000002048	HNRNPUL2 (ENSODEG00000002142)	TTC9C (ENSODEG00000002308)	GNG3 (ENSODEG00000002315)	UBXN1 (ENSODEG00000002987)	UQCC3 (ENSODEG00000003020)	INTS5 (ENSODEG00000003038)	GANAB (ENSODEG00000003210)	B3GAT3 (ENSODEG00000003388)	ROM1 (ENSODEG00000003428)	EML3 (ENSODEG00000003455)	MTA2 (ENSODEG00000003595)	TUT1 (ENSODEG00000002204)	ENSODEG00000002254	ENSODEG00000002275	ENSODEG00000002297 #22	ENSODEG00000002313	ENSODEG00000002333	VWCE (ENSODEG00000002356)	DDB1 (ENSODEG00000002419)	CYB561A3 (ENSODEG00000002516)	TKFC (ENSODEG00000002529)	TMEM138 (ENSODEG00000002548)	TMEM216 (ENSODEG00000002567)	CPSF7 (ENSODEG00000002610)	SDHAF2 (ENSODEG00000002638)	PPP1R32 (ENSODEG00000004127)	SYT7 (ENSODEG00000004157)	DAGLA (ENSODEG00000004222)	MYRF (ENSODEG00000004367)	TMEM258 (ENSODEG00000004598)
Long-tailed chinchilla	MODERN SPECIES	301							GAB3 (ENSCLAG00000000759) #12	DKC1 (ENSCLAG00000000720) #13	MPP1 (ENSCLAG00000000595) #14	F8 (ENSCLAG00000000314) #16	FUNDC2 (ENSCLAG00000000230) #17	CMC4 (ENSCLAG00000000217) #18	MTCP1 (ENSCLAG00000000239) #19	BRCC3 (ENSCLAG00000000163) ##20	ENSCLAG00000000125 #21	VBP1 (ENSCLAG00000000117) #22	RAB39B (ENSCLAG00000000113) #23	CLIC2 (ENSCLAG00000000498) #24	TMLHE (ENSCLAG00000000490) #27	SPRY3 (ENSCLAG00000000405) #28	VAMP7 (ENSCLAG00000000352) #29
Guinea pig	MODERN SPECIES	148	ENSCPOG00000034445 ##11	UBL4A (ENSCPOG00000040690)	SLC10A3 (ENSCPOG00000007289) #7	FAM3A (ENSCPOG00000019367) #8	G6PD (ENSCPOG00000021395) #9	IKBKG (ENSCPOG00000021550) #10	ENSCPOG00000026136	GAB3 (ENSCPOG00000002987) #12	DKC1 (ENSCPOG00000008825) #13	MPP1 (ENSCPOG00000008826) #14	F8 (ENSCPOG00000007773) #16	FUNDC2 (ENSCPOG00000015635) #17	MTCP1 (ENSCPOG00000034922) #19	CMC4 (ENSCPOG00000033896) #18	ENSCPOG00000001882 ##20	VBP1 (ENSCPOG00000013652) #22	RAB39B (ENSCPOG00000039524) #23	CLIC2 (ENSCPOG00000007641) #24	TMLHE (ENSCPOG00000005415) #27	SPRY3 (ENSCPOG00000038854) #28	VAMP7 (ENSCPOG00000024405) #29
Sciuridae	ANCESTRAL SPECIES	62			ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Marmotini	ANCESTRAL SPECIES	112			ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294.x #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294.w.a #16	ENSGT00940000154783.f #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Alpin marmot	MODERN SPECIES	163						ENSMMMG00000000626	GAB3 (ENSMMMG00000000520) #12	ENSMMMG00000000467 #13	MPP1 (ENSMMMG00000000399) #14	F8 (ENSMMMG00000000247) #16	FUNDC2 (ENSMMMG00000000206) #17	CMC4 (ENSMMMG00000000178) #18	MTCP1 (ENSMMMG00000000151) #19	BRCC3 (ENSMMMG00000000076) ##20	ENSMMMG00000024312 #21	VBP1 (ENSMMMG00000024309) #22	RAB39B (ENSMMMG00000024308) #23	CLIC2 (ENSMMMG00000024307) #24
Marmotini_b	ANCESTRAL SPECIES	202	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294.w.b #16	ENSGT00940000160294.x #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294.w.a #16	ENSGT00940000154783.f.m #17	ENSGT00390000012647.d #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Arctic ground squirrel	MODERN SPECIES	646						VAMP7 (ENSUPAG00010007306) #29	SPRY3 (ENSUPAG00010007313) #28	TMLHE (ENSUPAG00010007316) #27	ENSUPAG00010007335 #25	ENSUPAG00010007355 #16	ENSUPAG00010008121 #17	CMC4 (ENSUPAG00010008129) #18	MTCP1 (ENSUPAG00010008144) #19	BRCC3 (ENSUPAG00010008154) ##20	ENSUPAG00010008195 #21	VBP1 (ENSUPAG00010008210) #22	RAB39B (ENSUPAG00010008223) #23	CLIC2 (ENSUPAG00010008229) #24
Squirrel	MODERN SPECIES	519					ENSSTOG00000031419 ##11	GAB3 (ENSSTOG00000001065) #12	ENSSTOG00000001074 #13	MPP1 (ENSSTOG00000001078) #14	F8 (ENSSTOG00000023387) #16	ENSSTOG00000032258 #26	ENSSTOG00000020699 #25	ENSSTOG00000007801 #17	CMC4 (ENSSTOG00000025729) #18	MTCP1 (ENSSTOG00000034563) #19	BRCC3 (ENSSTOG00000019781) ##20	VBP1 (ENSSTOG00000006684) #22	RAB39B (ENSSTOG00000011237) #23	CLIC2 (ENSSTOG00000025815) #24
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005017218	ENSSVLG00005017166	ENSSVLG00005017122	ENSSVLG00005017050 #11	ENSSVLG00005016985	GAB3 (ENSSVLG00005016708) #12	DKC1 (ENSSVLG00005016642) #13	MPP1 (ENSSVLG00005016498) #14	SMIM9 (ENSSVLG00005016452) #15	ENSSVLG00005016435 #26	ENSSVLG00005016424 #25	F8 (ENSSVLG00005016200) #16	ENSSVLG00005016124 #17	MTCP1 (ENSSVLG00005016077) #19	ENSSVLG00005015678 ##20	ENSSVLG00005015476 #22	RAB39B (ENSSVLG00005015437) #23	CLIC2 (ENSSVLG00005015403) #24	ENSSVLG00005015390 #26	ENSSVLG00005015367 #25	ENSSVLG00005015345 #26	TMLHE (ENSSVLG00005015282) #27	ENSSVLG00005015225	SPRY3 (ENSSVLG00005015208) #28	VAMP7 (ENSSVLG00005015109) #29
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005010236	PDE10A (ENSSVLG00005010372)	C6orf118 (ENSSVLG00005010851)	QKI (ENSSVLG00005011023)	PACRG (ENSSVLG00005011174)	PRKN (ENSSVLG00005011292)	AGPAT4 (ENSSVLG00005011803)	MAP3K4 (ENSSVLG00005011972)	ENSSVLG00005013042	ENSSVLG00005013165	ENSSVLG00005013240	SLC22A3 (ENSSVLG00005013302)	SLC22A2 (ENSSVLG00005013453)	SLC22A1 (ENSSVLG00005013724)	IGF2R (ENSSVLG00005013999)	ENSSVLG00005014490 #22	MAS1 (ENSSVLG00005014545)	ENSSVLG00005014568	MRPL18 (ENSSVLG00005014946)	ENSSVLG00005015024	ENSSVLG00005015119	ACAT2 (ENSSVLG00005015487)	ENSSVLG00005015534	ENSSVLG00005015666	ENSSVLG00005015820	FNDC1 (ENSSVLG00005015913)	TAGAP (ENSSVLG00005016286)	RSPH3 (ENSSVLG00005016457)	EZR (ENSSVLG00005016672)	SYTL3 (ENSSVLG00005016826)	ENSSVLG00005017151
Laurasiatheria	ANCESTRAL SPECIES	26	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h #11	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Carnivora	ANCESTRAL SPECIES	11	ENSGT00410000025802.h #11	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Felidae	ANCESTRAL SPECIES	29	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744.m #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT01010000226875	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Panthera	ANCESTRAL SPECIES	53	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744.m #14	ENSGT00390000005685 #15	ENSGT00940000160294.k #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294.l.a #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT01010000226875	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Tiger	MODERN SPECIES	288											ENSPTIG00000009117 #16	FUNDC2 (ENSPTIG00000008095) #17	CMC4 (ENSPTIG00000008061) #18	MTCP1 (ENSPTIG00000007940) #19	BRCC3 (ENSPTIG00000007619) ##20	VBP1 (ENSPTIG00000006992) #22	RAB39B (ENSPTIG00000006927) #23	CLIC2 (ENSPTIG00000006873) #24	TMLHE (ENSPTIG00000006659) #27
Panthera_a	ANCESTRAL SPECIES	64	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744.m #14	ENSGT00390000005685 #15	ENSGT00940000160294.k #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294.l.a #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
leopard	MODERN SPECIES	270									F8 (ENSPPRG00000019076) #16	ENSPPRG00000012508 #26	FUNDC2 (ENSPPRG00000018602) #17	ENSPPRG00000012502	CMC4 (ENSPPRG00000018580) #18	MTCP1 (ENSPPRG00000018558) #19	BRCC3 (ENSPPRG00000018359) ##20	VBP1 (ENSPPRG00000017482) #22	RAB39B (ENSPPRG00000017193) #23	CLIC2 (ENSPPRG00000016958) #24
lion	MODERN SPECIES	88	MTM1 (ENSPLOG00000010530)	MAMLD1 (ENSPLOG00000010470)	GAB3 (ENSPLOG00000010419) #12	DKC1 (ENSPLOG00000010363) #13	ENSPLOG00000010239 #14	SMIM9 (ENSPLOG00000010183) #15	ENSPLOG00000010169 #26	ENSPLOG00000010158 #25	F8 (ENSPLOG00000010029) #16	ENSPLOG00000009920	FUNDC2 (ENSPLOG00000009895) #17	CMC4 (ENSPLOG00000009878) #18	MTCP1 (ENSPLOG00000009860) #19	BRCC3 (ENSPLOG00000009840) ##20	ENSPLOG00000009805 #21	VBP1 (ENSPLOG00000009773) #22	RAB39B (ENSPLOG00000009756) #23	ENSPLOG00000009737	ENSPLOG00000009727 #26	ENSPLOG00000009715 #25	ENSPLOG00000009699 #26	TMLHE (ENSPLOG00000009686) #27	ENSPLOG00000009660	SPRY3 (ENSPLOG00000009644) #28	VAMP7 (ENSPLOG00000009591) #29	GTPBP6 (ENSPLOG00000009500)
Cat	MODERN SPECIES	252	FAM3A (ENSFCAG00000035237) #8	G6PD (ENSFCAG00000043880) #9	IKBKG (ENSFCAG00000029840) #10	ENSFCAG00000048808	GAB3 (ENSFCAG00000006576) #12	DKC1 (ENSFCAG00000006577) #13	MPP1 (ENSFCAG00000006578) #14	SMIM9 (ENSFCAG00000040693) #15	F8 (ENSFCAG00000048336) #16	ENSFCAG00000045185 #25	FUNDC2 (ENSFCAG00000031335) #17	CMC4 (ENSFCAG00000023645) #18	MTCP1 (ENSFCAG00000029629) #19	BRCC3 (ENSFCAG00000019258) ##20	ENSFCAG00000027511 #21	VBP1 (ENSFCAG00000022037) #22	RAB39B (ENSFCAG00000038920) #23	CLIC2 (ENSFCAG00000038526) #24	H2AB2 (ENSFCAG00000044576) #26	ENSFCAG00000045412 #25	H2AB3 (ENSFCAG00000044965) #26	TMLHE (ENSFCAG00000023758) #27	ENSFCAG00000047531	SPRY3 (ENSFCAG00000028342) #28	VAMP7 (ENSFCAG00000025706) #29	ENSFCAG00000048570	ENSFCAG00000010308
Caniformia	ANCESTRAL SPECIES	22	ENSGT00410000025802.h #11	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Caniformia_b	ANCESTRAL SPECIES	27	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01030000235238.c	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000006885.a #19	ENSGT00390000000360.r.c.b ##20	ENSGT00390000012647 #18	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Ursidae	ANCESTRAL SPECIES	45	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744.p #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000013102.f	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28
Ursus	ANCESTRAL SPECIES	215					ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744.p #14	ENSGT00940000163020 #26	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000013102.f	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.c.b ##20	ENSGT00390000018904 #22	ENSGT00910000148519	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28
Polar bear	MODERN SPECIES	139					ENSUMAG00000016855 ##11	GAB3 (ENSUMAG00000016863) #12	DKC1 (ENSUMAG00000016899) #13	MPP1 (ENSUMAG00000017156) #14	F8 (ENSUMAG00000017227) #16	ENSUMAG00000017273 #26	FUNDC2 (ENSUMAG00000017279) #17	ENSUMAG00000017285	CMC4 (ENSUMAG00000017289) #18	MTCP1 (ENSUMAG00000017296) #19	BRCC3 (ENSUMAG00000017317) ##20	VBP1 (ENSUMAG00000017374) #22	ENSUMAG00000017379	RAB39B (ENSUMAG00000017386) #23	CLIC2 (ENSUMAG00000017393) #24	TMLHE (ENSUMAG00000017400) #27	SPRY3 (ENSUMAG00000017413) #28
American black bear	MODERN SPECIES	4647																VBP1 (ENSUAMG00000023019) #22	ENSUAMG00000023025	RAB39B (ENSUAMG00000023026) #23	CLIC2 (ENSUAMG00000023027) #24	ENSUAMG00000023029 #26
Giant Panda	MODERN SPECIES	2288	IKBKG (ENSAMEG00000000410) #10	ENSAMEG00000019272	ENSAMEG00000019282	GAB3 (ENSAMEG00000001366) #12	DKC1 (ENSAMEG00000002776) #13	MPP1 (ENSAMEG00000002802) #14	SMIM9 (ENSAMEG00000028154) #15	F8 (ENSAMEG00000002491) #16	ENSAMEG00000028778	FUNDC2 (ENSAMEG00000011956) #17	ENSAMEG00000024837	CMC4 (ENSAMEG00000011961) #18	MTCP1 (ENSAMEG00000028878) #19	BRCC3 (ENSAMEG00000011969) ##20	ENSAMEG00000011976 #21	VBP1 (ENSAMEG00000030279) #22	ENSAMEG00000028809	RAB39B (ENSAMEG00000009075) #23	CLIC2 (ENSAMEG00000009077) #24	ENSAMEG00000026904 #26	ENSAMEG00000025129 #26	TMLHE (ENSAMEG00000013789) #27	ENSAMEG00000006387 #29
Mustelinae	ANCESTRAL SPECIES	168					ENSGT01030000235238.d	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000006885.a #19	ENSGT00390000012647 #18	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27
American mink	MODERN SPECIES	556										ENSNVIG00000011778 #16	FUNDC2 (ENSNVIG00000011768) #17	MTCP1 (ENSNVIG00000011747) #19	CMC4 (ENSNVIG00000011740) #18	BRCC3 (ENSNVIG00000011655) ##20	ENSNVIG00000011635 #21	VBP1 (ENSNVIG00000011591) #22	RAB39B (ENSNVIG00000011584) #23	CLIC2 (ENSNVIG00000011570) #24	ENSNVIG00000011553 #25	TMLHE (ENSNVIG00000011500) #27
Ferret	DUPLICATION
Ferret	MODERN SPECIES	183	MYOZ2 (ENSMPUG00000017430)	USP53 (ENSMPUG00000017422)	FABP2 (ENSMPUG00000017421)	PDE5A (ENSMPUG00000017420)	ENSMPUG00000017417	MAD2L1 (ENSMPUG00000017416)	PRDM5 (ENSMPUG00000017415)	NDNF (ENSMPUG00000017414)	TNIP3 (ENSMPUG00000017413)	QRFPR (ENSMPUG00000017412)	ANXA5 (ENSMPUG00000017411)	EXOSC9 (ENSMPUG00000017410)	CCNA2 (ENSMPUG00000017407)	BBS7 (ENSMPUG00000017404)	TRPC3 (ENSMPUG00000017402)	ENSMPUG00000017399 #22	BLTP1 (ENSMPUG00000017395)	ADAD1 (ENSMPUG00000017394)	IL2 (ENSMPUG00000017393)	IL21 (ENSMPUG00000017391)	ENSMPUG00000018974	ENSMPUG00000017388	BBS12 (ENSMPUG00000018971)	FGF2 (ENSMPUG00000017387)	NUDT6 (ENSMPUG00000017386)	SPATA5 (ENSMPUG00000017385)	SPRY1 (ENSMPUG00000018965) ##28	ENSMPUG00000017384	ANKRD50 (ENSMPUG00000017383)	FAT4 (ENSMPUG00000017382)	INTU (ENSMPUG00000017381)
Ferret	MODERN SPECIES	463	ENSMPUG00000016150	DUSP9 (ENSMPUG00000016151)	PNCK (ENSMPUG00000016148)	ENSMPUG00000016146	ENSMPUG00000019549	ENSMPUG00000019547	ENSMPUG00000019545	ENSMPUG00000016145	ENSMPUG00000019543	GAB3 (ENSMPUG00000016143) #12	MPP1 (ENSMPUG00000016141) #14	F8 (ENSMPUG00000016139) #16	DKC1 (ENSMPUG00000016136) #13	BRCC3 (ENSMPUG00000016134) ##20	ENSMPUG00000016133 #21	ENSMPUG00000016131 #22	RAB39B (ENSMPUG00000016129) #23	CLIC2 (ENSMPUG00000016128) #24	ENSMPUG00000019541 #26	TMLHE (ENSMPUG00000016127) #27	ENSMPUG00000016113 #29
Canidae	ANCESTRAL SPECIES	50	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h #11	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092.a #13	ENSGT00940000158744 #14	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647.a #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Canis_lupus	ANCESTRAL SPECIES	22	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.h #11	ENSGT00410000025802.g.b.k ##11	ENSGT00940000159803 #12	ENSGT00510000047092.a #13	ENSGT00940000158744 #14	ENSGT00940000163020 #26	ENSGT00390000016992.m #25	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000006885.a #19	ENSGT00390000012647.a #18	ENSGT00390000000360.r.c.a ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Dog	MODERN SPECIES	144	G6PD (ENSCAFG00845029388) #9	IKBKG (ENSCAFG00845029634) #10	cOR7R1 (ENSCAFG00845029673)	ENSCAFG00845029686 #11	ENSCAFG00845029697 ##11	LAGE3 (ENSCAFG00845029708) ##11	ENSCAFG00845029817 ##11	DKC1 (ENSCAFG00845029852) #13	MPP1 (ENSCAFG00845029936) #14	F8 (ENSCAFG00845030098) #16	ENSCAFG00845030269 #26	ENSCAFG00845030278 #25	FUNDC2 (ENSCAFG00845030300) ##20	CMC4 (ENSCAFG00845030338) #18	MTCP1 (ENSCAFG00845030350) #19	VBP1 (ENSCAFG00845017867) #22	RAB39B (ENSCAFG00845017965) #23	CLIC2 (ENSCAFG00845017998) #24	ENSCAFG00845018126 #27	SPRY3 (ENSCAFG00845018191) #28	VAMP7 (ENSCAFG00845018278) #29	ENSCAFG00845018459
Dingo	MODERN SPECIES	383	ENSCAFG00020008988	ENSCAFG00020008985	ENSCAFG00020008976 #11	ENSCAFG00020008968 ##11	ENSCAFG00020008959 ##11	ENSCAFG00020008942 #12	ENSCAFG00020008918 #13	MPP1 (ENSCAFG00020008744) #14	ENSCAFG00020008739 #26	ENSCAFG00020008736 #25	F8 (ENSCAFG00020008704) #16	FUNDC2 (ENSCAFG00020008699) #17	MTCP1 (ENSCAFG00020008697) #19	CMC4 (ENSCAFG00020008696) #18	ENSCAFG00020008684 ##20	VBP1 (ENSCAFG00020008675) #22	RAB39B (ENSCAFG00020008673) #23	CLIC2 (ENSCAFG00020008670) #24	ENSCAFG00020008667 #26	ENSCAFG00020008665 #25	ENSCAFG00020008663 #26	TMLHE (ENSCAFG00020008661) #27	ENSCAFG00020008659	SPRY3 (ENSCAFG00020008657) #28	VAMP7 (ENSCAFG00020008654) #29
Red fox	DUPLICATION
Red fox	MODERN SPECIES	20							ENSVVUG00000020739 ##11	DKC1 (ENSVVUG00000020734) #13	MPP1 (ENSVVUG00000020728) #14	F8 (ENSVVUG00000020717) #16	FUNDC2 (ENSVVUG00000020713) #17	CMC4 (ENSVVUG00000020710) #18	MTCP1 (ENSVVUG00000020711) #19	ENSVVUG00000020709 ##20	ENSVVUG00000020707 #21	ENSVVUG00000020703 #22	ADAP2 (ENSVVUG00000020701)	RNF135 (ENSVVUG00000020698)	ENSVVUG00000020695	RHOT1 (ENSVVUG00000020640)	RHBDL3 (ENSVVUG00000020629)	CUNH17orf75 (ENSVVUG00000020625)	ZNF207 (ENSVVUG00000020618)	PSMD11 (ENSVVUG00000020613)	CDK5R1 (ENSVVUG00000020611)	MYO1D (ENSVVUG00000020589)	TMEM98 (ENSVVUG00000020587)	SPACA3 (ENSVVUG00000020586)	ASIC2 (ENSVVUG00000020562)	ENSVVUG00000020545	CCL2 (ENSVVUG00000020543)
Red fox	MODERN SPECIES	121	LGALS9 (ENSVVUG00000015869)	KSR1 (ENSVVUG00000015399)	WSB1 (ENSVVUG00000015381)	ENSVVUG00000015375	OMG (ENSVVUG00000015373)	EVI2B (ENSVVUG00000015368)	EVI2A (ENSVVUG00000015363)	NF1 (ENSVVUG00000012588)	RAB11FIP4 (ENSVVUG00000012277)	COPRS (ENSVVUG00000012255)	UTP6 (ENSVVUG00000012238)	SUZ12 (ENSVVUG00000012214)	CRLF3 (ENSVVUG00000012205)	ATAD5 (ENSVVUG00000012156)	TEFM (ENSVVUG00000012150)	ENSVVUG00000012145 #22	RAB39B (ENSVVUG00000012142) #23	CLIC2 (ENSVVUG00000012140) #24
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Equus	ANCESTRAL SPECIES	52	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b.n ##11	ENSGT00410000025802.g.b.m ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Horse	MODERN SPECIES	480	ENSECAG00000033189	ENSECAG00000029643 ##11	ENSECAG00000056189 #26	ENSECAG00000031652 ##11	GAB3 (ENSECAG00000023348) #12	DKC1 (ENSECAG00000023524) #13	MPP1 (ENSECAG00000009595) #14	F8 (ENSECAG00000015044) #16	ENSECAG00000033114	ENSECAG00000054244 #26	ENSECAG00000029708 #25	ENSECAG00000058802	FUNDC2 (ENSECAG00000026822) #17	MTCP1 (ENSECAG00000043072) #19	BRCC3 (ENSECAG00000021441) ##20	VBP1 (ENSECAG00000001468) #22	ENSECAG00000047761	ENSECAG00000053801	RAB39B (ENSECAG00000007380) #23	CLIC2 (ENSECAG00000008024) #24	TMLHE (ENSECAG00000012334) #27	SPRY3 (ENSECAG00000058224) #28	ENSECAG00000027923	ENSECAG00000030972	VAMP7 (ENSECAG00000014117) #29
Donkey	MODERN SPECIES	36	ENSEASG00005027434 #25	ENSEASG00005031374 #26	ENSEASG00005028284	ENSEASG00005034297 ##11	ENSEASG00005032503 ##11	ENSEASG00005033034 #12	ENSEASG00005007484 #13	MPP1 (ENSEASG00005007482) #14	SMIM9 (ENSEASG00005025831) #15	ENSEASG00005033689 #16	ENSEASG00005004499 #16	ENSEASG00005034088 #17	ENSEASG00005036735 #18	MTCP1 (ENSEASG00005004486) #19	BRCC3 (ENSEASG00005004482) ##20	VBP1 (ENSEASG00005035328) #22	RAB39B (ENSEASG00005034031) #23	ENSEASG00005024036	ENSEASG00005001752 #26	ENSEASG00005001750 #27	ENSEASG00005038101 #28	ENSEASG00005011059	ENSEASG00005011061 #29	ENSEASG00005036960	ENSEASG00005035090	TCEAL1 (ENSEASG00005025524)	MORF4L2 (ENSEASG00005002526)	ENSEASG00005002530	TMEM31 (ENSEASG00005002551)	PLP1 (ENSEASG00005002561)	ENSEASG00005029160
Chiroptera	ANCESTRAL SPECIES	48	ENSGT01030000238159	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.c.a ##20	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Megabat	MODERN SPECIES	2670													CMC4 (ENSPVAG00000016848) #18	MTCP1 (ENSPVAG00000016849) #19	BRCC3 (ENSPVAG00000016850) ##20	VBP1 (ENSPVAG00000016852) #22	RAB39B (ENSPVAG00000016854) #23
Microchiroptera	ANCESTRAL SPECIES	45	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT01050000244815.B.a.a	ENSGT01030000238159	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000162988	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.a.a	ENSGT00950000182925.D.a.b.b
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010002963 ##11	ENSRFEG00010002921	ENSRFEG00010002889	ENSRFEG00010002860 #11	GAB3 (ENSRFEG00010002752) #12	DKC1 (ENSRFEG00010002621) #13	MPP1 (ENSRFEG00010002502) #14	SMIM9 (ENSRFEG00010002415) #15	ENSRFEG00010002379 #26	ENSRFEG00010002358 #25	F8 (ENSRFEG00010002258) #16	FUNDC2 (ENSRFEG00010002186) #17	MTCP1 (ENSRFEG00010000401) #19	BRCC3 (ENSRFEG00010000187) ##20	ENSRFEG00010000146 #21	VBP1 (ENSRFEG00010000140) #22	RAB39B (ENSRFEG00010000135) #23	CLIC2 (ENSRFEG00010000129) #24	ENSRFEG00010000120 #25	ENSRFEG00010000099 #26	ENSRFEG00010000092 #26	TMLHE (ENSRFEG00010000091) #27	SPRY3 (ENSRFEG00010000089) #28	VAMP7 (ENSRFEG00010000088) #29	ENSRFEG00010000087	ENSRFEG00010000086	ENSRFEG00010000085	ENSRFEG00010000084	FAAH2 (ENSRFEG00010000083)	ENSRFEG00010000082	ENSRFEG00010000081
Microbat	MODERN SPECIES	1106						ENSMLUG00000022546	ENSMLUG00000025092	GAB3 (ENSMLUG00000007763) #12	DKC1 (ENSMLUG00000011918) #13	MPP1 (ENSMLUG00000011938) #14	F8 (ENSMLUG00000002117) #16	ENSMLUG00000007776 #17	CMC4 (ENSMLUG00000024035) #18	MTCP1 (ENSMLUG00000003916) #19	BRCC3 (ENSMLUG00000005420) ##20	VBP1 (ENSMLUG00000015396) #22	RAB39B (ENSMLUG00000007660) #23	CLIC2 (ENSMLUG00000002374) #24	ENSMLUG00000029102 #26	ENSMLUG00000025178 #25	ENSMLUG00000022365 #26	SPRY3 (ENSMLUG00000022306) #28	VAMP7 (ENSMLUG00000012765) #29	ENSMLUG00000011370	ENSMLUG00000025240	FAAH2 (ENSMLUG00000017725)	ENSMLUG00000002732	ENSMLUG00000006656	SPIN3 (ENSMLUG00000015431)	ENSMLUG00000004357	UBQLN2 (ENSMLUG00000007552)
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00410000025802.g.b ##11	ENSGT01030000235238	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Suina	ANCESTRAL SPECIES	7	ENSGT00730000111022	ENSGT00950000182808.b.b #7	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992 #25	ENSGT00940000163020 #26	ENSGT00940000160294 #16	ENSGT00390000005685 #15	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT01030000235464	ENSGT00510000047733 #29
Pig	MODERN SPECIES	300	G6PD (ENSSSCG00000025108) #9	IKBKG (ENSSSCG00000012825) #10	ENSSSCG00000012827	ENSSSCG00000049540 ##11	GAB3 (ENSSSCG00000012824) #12	DKC1 (ENSSSCG00000012823) #13	F8 (ENSSSCG00000012822) #16	SMIM9 (ENSSSCG00000055917) #15	ENSSSCG00000057758 #26	ENSSSCG00000054901 #25	FUNDC2 (ENSSSCG00000012817) #17	CMC4 (ENSSSCG00000062015) #18	MTCP1 (ENSSSCG00000012816) #19	BRCC3 (ENSSSCG00000012813) #20	ENSSSCG00000012812 #21	VBP1 (ENSSSCG00000012811) #22	RAB39B (ENSSSCG00000024233) #23	ENSSSCG00000057979 #25	ENSSSCG00000055307 #26	CLIC2 (ENSSSCG00000039998) #24	ENSSSCG00000063292 #26	TMLHE (ENSSSCG00000038442) #27	ENSSSCG00000035312	SPRY3 (ENSSSCG00000034345) #28	VAMP7 (ENSSSCG00000029615) #29
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	44	IKBKG (ENSCWAG00000000145) #10	ENSCWAG00000000203	ENSCWAG00000000223	ENSCWAG00000000236 ##11	GAB3 (ENSCWAG00000000272) #12	DKC1 (ENSCWAG00000000314) #13	MPP1 (ENSCWAG00000000412) #14	SMIM9 (ENSCWAG00000000458) #15	ENSCWAG00000000473 #16	ENSCWAG00000000488 #26	ENSCWAG00000000499 #25	FUNDC2 (ENSCWAG00000000516) #17	CMC4 (ENSCWAG00000000535) #18	MTCP1 (ENSCWAG00000000545) #19	BRCC3 (ENSCWAG00000000584) #20	ENSCWAG00000000727 #22	RAB39B (ENSCWAG00000000758) #23	CLIC2 (ENSCWAG00000000773) #24	ENSCWAG00000000788 #26	ENSCWAG00000000796	TMLHE (ENSCWAG00000000814) #27	ENSCWAG00000000835	SPRY3 (ENSCWAG00000000847) #28	ENSCWAG00000000859	VAMP7 (ENSCWAG00000000883) #29	ENSCWAG00000000908	ENSCWAG00000000922	ENSCWAG00000000971
Chacoan peccary	MODERN SPECIES	950	GPR62 (ENSCWAG00000012500)	PARP3 (ENSCWAG00000012452)	RRP9 (ENSCWAG00000012415)	IQCF1 (ENSCWAG00000012365)	IQCF5 (ENSCWAG00000012338)	IQCF2 (ENSCWAG00000012302)	IQCF3 (ENSCWAG00000012249)	ENSCWAG00000012222	IQCF6 (ENSCWAG00000012162)	GRM2 (ENSCWAG00000011986)	TEX264 (ENSCWAG00000011911)	RAD54L2 (ENSCWAG00000011847)	DCAF1 (ENSCWAG00000021359)	RBM15B (ENSCWAG00000021353)	MANF (ENSCWAG00000021349)	ENSCWAG00000021342 #22	DOCK3 (ENSCWAG00000021297)	MAPKAPK3 (ENSCWAG00000021277)	CISH (ENSCWAG00000021269)	HEMK1 (ENSCWAG00000021261)	C3orf18 (ENSCWAG00000021250)	CACNA2D2 (ENSCWAG00000020731)	TMEM115 (ENSCWAG00000020681)	CYB561D2 (ENSCWAG00000020669)	NPRL2 (ENSCWAG00000020648)	ZMYND10 (ENSCWAG00000020600)	RASSF1 (ENSCWAG00000020553)	TUSC2 (ENSCWAG00000020538)	HYAL2 (ENSCWAG00000020509)	HYAL1 (ENSCWAG00000020497)	NAA80 (ENSCWAG00000020487)
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00410000025802.g.b ##11	ENSGT01030000235238	ENSGT00410000025802.h #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Artiodactyla_b	ANCESTRAL SPECIES	19	ENSGT00960000186859	ENSGT00410000025802.g.b ##11	ENSGT01030000235238	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Pecora	ANCESTRAL SPECIES	28				ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020.bb #26	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444	ENSGT00940000154972	ENSGT00940000161201	ENSGT00940000155374
Percora_a	ANCESTRAL SPECIES	30				ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000016992 #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020.bb #26	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444	ENSGT00940000154972	ENSGT00940000161201	ENSGT00940000155374
Bovidae	ANCESTRAL SPECIES	29				ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000016992.s #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000163020.bb #26	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00960000188264.C	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167	ENSGT00940000159444
Caprinae	ANCESTRAL SPECIES	53	ENSGT00940000159611	ENSGT00390000000141	ENSGT00950000182994.A.n.a	ENSGT00390000001134.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00390000016992.s #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000163020.bb #26	ENSGT00940000161397 #24	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00960000188264.C
Rambouillet Sheep	MODERN SPECIES	205	DACH2 (ENSOARG00020021981)	ENSOARG00020022547	ENSOARG00020022607	ENSOARG00020022613	ENSOARG00020022631	GAB3 (ENSOARG00020015493) #12	DKC1 (ENSOARG00020015553) #13	MPP1 (ENSOARG00020015726) #14	SMIM9 (ENSOARG00020015879) #15	F8 (ENSOARG00020015985) #16	ENSOARG00020016962 #25	FUNDC2 (ENSOARG00020017001) #17	CMC4 (ENSOARG00020017081) #18	MTCP1 (ENSOARG00020017110) #19	BRCC3 (ENSOARG00020017169) ##20	VBP1 (ENSOARG00020017496) #22	RAB39B (ENSOARG00020017597) #23	ENSOARG00020017633 #25	ENSOARG00020017655 #26	RIDA (ENSOARG00020017680)	CLIC2 (ENSOARG00020017713) #24	SPRY3 (ENSOARG00020017989) #28	VAMP7 (ENSOARG00020018024) #29	ENSOARG00020018236	ENSOARG00020018387	ENSOARG00020018399	ENSOARG00020018429	ENSOARG00020018446	ENSOARG00020018476	ENSOARG00020018489	ENSOARG00020018504
Goat	MODERN SPECIES	36															ENSCHIG00000015970 #21	VBP1 (ENSCHIG00000019363) #22	RAB39B (ENSCHIG00000000158) #23	ENSCHIG00000018644 #25	ENSCHIG00000000266	CLIC2 (ENSCHIG00000016619) #24	ENSCHIG00000000748	TMLHE (ENSCHIG00000000055) #27	VAMP7 (ENSCHIG00000000128) #29
Bovinae	ANCESTRAL SPECIES	42					ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00390000016992.s #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a	ENSGT00940000161825.v.a.b	ENSGT00910000144363.g.a.a.a.a.a	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935	ENSGT00940000162167
Bos	ANCESTRAL SPECIES	36	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00390000016992.s #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a	ENSGT00390000012182.i.b	ENSGT00940000161825.v.b	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935
Bos_b	ANCESTRAL SPECIES	31	ENSGT00390000003937	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00390000016992.s #25	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a	ENSGT00390000012182.i.b	ENSGT00940000161825.v.b	ENSGT00530000063872.A	ENSGT00940000158229	ENSGT00940000155935
Hybrid Bos Indicus	MODERN SPECIES	315	HAUS7 (ENSBIXG00005001172)	ENSBIXG00005011766	ENSBIXG00005011758	ENSBIXG00005001157	ENSBIXG00005011731	GAB3 (ENSBIXG00005011700) #12	DKC1 (ENSBIXG00005011665) #13	MPP1 (ENSBIXG00005011616) #14	F8 (ENSBIXG00005006715) #16	ENSBIXG00005011325 #25	FUNDC2 (ENSBIXG00005006322) #17	CMC4 (ENSBIXG00005001057) #18	MTCP1 (ENSBIXG00005011273) #19	BRCC3 (ENSBIXG00005001036) ##20	ENSBIXG00005011073 #21	VBP1 (ENSBIXG00005011035) #22	ENSBIXG00005010980	RAB39B (ENSBIXG00005010970) #23	ENSBIXG00005010957 #25	ENSBIXG00005000980	CLIC2 (ENSBIXG00005010938) #24	ENSBIXG00005010929	TMLHE (ENSBIXG00005000964) #27	ENSBIXG00005010854	SPRY3 (ENSBIXG00005010830) #28	VAMP7 (ENSBIXG00005010795) #29	ENSBIXG00005010749	ENSBIXG00005010717	ENSBIXG00005000928	ENSBIXG00005000922	ENSBIXG00005010675
Cow	MODERN SPECIES	177	HAUS7 (ENSBTAG00000014095)	ENSBTAG00000050830	ENSBTAG00000047917	ENSBTAG00000020185	ENSBTAG00000023820	GAB3 (ENSBTAG00000013044) #12	DKC1 (ENSBTAG00000013045) #13	MPP1 (ENSBTAG00000013046) #14	ENSBTAG00000033167 #25	F8 (ENSBTAG00000010726) #16	FUNDC2 (ENSBTAG00000016977) #17	CMC4 (ENSBTAG00000007813) #18	MTCP1 (ENSBTAG00000045697) #19	BRCC3 (ENSBTAG00000007817) ##20	ENSBTAG00000011144 #21	VBP1 (ENSBTAG00000017265) #22	ENSBTAG00000052586	RAB39B (ENSBTAG00000019779) #23	ENSBTAG00000023978 #25	CLIC2 (ENSBTAG00000010948) #24	TMLHE (ENSBTAG00000011648) #27	SPRY3 (ENSBTAG00000010245) #28	VAMP7 (ENSBTAG00000049615) #29	ZNF185 (ENSBTAG00000005776)	NSDHL (ENSBTAG00000009231)	CETN2 (ENSBTAG00000007844)	GABRQ (ENSBTAG00000013002)	ENSBTAG00000048998	GABRA3 (ENSBTAG00000006691)	ENSBTAG00000012748	GABRE (ENSBTAG00000013548)
Bos_a	ANCESTRAL SPECIES	39	ENSGT00390000003937	ENSGT00940000162887	ENSGT01030000234522.C.b.e.a.a.a.a.a.b	ENSGT00940000154488.B	ENSGT00390000001700.a.b.b.a.a	ENSGT01030000235238.e.b	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d.b ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00390000000673.b.yb.a	ENSGT00940000158132 #23	ENSGT00390000016992.t #25	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29	ENSGT00940000161825.v.a.a.b	ENSGT00390000012182.i.a.a.a
Domestic yak	MODERN SPECIES	69	ENSBGRG00000018441	ENSBGRG00000018361	ENSBGRG00000018336	GAB3 (ENSBGRG00000018202) #12	DKC1 (ENSBGRG00000017777) #13	MPP1 (ENSBGRG00000017459) #14	ENSBGRG00000017426	ENSBGRG00000017378 #25	F8 (ENSBGRG00000024985) #16	FUNDC2 (ENSBGRG00000024951) #17	ENSBGRG00000024933 #18	MTCP1 (ENSBGRG00000024911) #19	BRCC3 (ENSBGRG00000024843) ##20	ENSBGRG00000024824	ENSBGRG00000024794 #21	VBP1 (ENSBGRG00000024762) #22	ENSBGRG00000024744	RAB39B (ENSBGRG00000024738) #23	ENSBGRG00000024735 #25	CLIC2 (ENSBGRG00000024695) #24	TMLHE (ENSBGRG00000024645) #27	SPRY3 (ENSBGRG00000024611) #28	VAMP7 (ENSBGRG00000024507) #29	ENSBGRG00000024491	ENSBGRG00000024481	ENSBGRG00000024460	ENSBGRG00000024444	ENSBGRG00000024428	ENSBGRG00000024396	MTM1 (ENSBGRG00000024246)	MTMR1 (ENSBGRG00000023860)
Wild yak	MODERN SPECIES	1108							GAB3 (ENSBMUG00000006895) #12	DKC1 (ENSBMUG00000006907) #13	MPP1 (ENSBMUG00000006975) #14	F8 (ENSBMUG00000007027) #16	FUNDC2 (ENSBMUG00000007050) #17	CMC4 (ENSBMUG00000007064) #18	MTCP1 (ENSBMUG00000007077) #19	BRCC3 (ENSBMUG00000007115) ##20	ENSBMUG00000007145 #21	VBP1 (ENSBMUG00000007185) #22	RAB39B (ENSBMUG00000007199) #23
American bison	MODERN SPECIES	2773																VBP1 (ENSBBBG00000025267) #22	ENSBBBG00000025286
Siberian musk deer	MODERN SPECIES	67						ENSMMSG00000011090	GAB3 (ENSMMSG00000011112) #12	DKC1 (ENSMMSG00000011162) #13	MPP1 (ENSMMSG00000011258) #14	SMIM9 (ENSMMSG00000011384) #15	F8 (ENSMMSG00000011419) #16	ENSMMSG00000011482 #17	CMC4 (ENSMMSG00000011510) #18	MTCP1 (ENSMMSG00000011532) #19	BRCC3 (ENSMMSG00000011560) ##20	VBP1 (ENSMMSG00000011660) #22	RAB39B (ENSMMSG00000011708) #23	ENSMMSG00000011732 #25	CLIC2 (ENSMMSG00000011739) #24	ENSMMSG00000011761 #26	TMLHE (ENSMMSG00000011781) #27	ENSMMSG00000011850	SPRY3 (ENSMMSG00000011861) #28	VAMP7 (ENSMMSG00000011884) #29	ENSMMSG00000012009	ENSMMSG00000013968	ENSMMSG00000013979	ENSMMSG00000014004
Cetacea	ANCESTRAL SPECIES	19	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f.d.a #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Odontoceti	ANCESTRAL SPECIES	19	ENSGT00530000063808.a #10	ENSGT00410000025802.g.b ##11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f.d.a #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Sperm whale	MODERN SPECIES	13	FAM50A (ENSPCTG00005014324)	GDI1 (ENSPCTG00005014385)	IKBKG (ENSPCTG00005014430) #10	ENSPCTG00005014674 ##11	GAB3 (ENSPCTG00005014727) #12	DKC1 (ENSPCTG00005014862) #13	MPP1 (ENSPCTG00005014958) #14	SMIM9 (ENSPCTG00005015221) #15	F8 (ENSPCTG00005015296) #16	ENSPCTG00005015667 #26	F8A1 (ENSPCTG00005015687) #25	FUNDC2 (ENSPCTG00005015711) #17	CMC4 (ENSPCTG00005015746) #18	MTCP1 (ENSPCTG00005015780) #19	BRCC3 (ENSPCTG00005015822) ##20	VBP1 (ENSPCTG00005016073) #22	RAB39B (ENSPCTG00005016182) #23	ENSPCTG00005016223 #26	CLIC2 (ENSPCTG00005016241) #24	ENSPCTG00005016292 #26	TMLHE (ENSPCTG00005016307) #27	ENSPCTG00005016361	SPRY3 (ENSPCTG00005016380) #28	ENSPCTG00005016415 #29
Odontoceti_a	ANCESTRAL SPECIES	21	ENSGT00530000063808.a #10	ENSGT00960000186859	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020 #26	ENSGT00390000016992 #25	ENSGT00940000154783.f.d.a #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Odontoceti_b	ANCESTRAL SPECIES	17	ENSGT00530000063808.a #10	ENSGT00960000186859	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020.y #26	ENSGT00390000016992.x #25	ENSGT00940000154783.f.d.a #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00390000000360.r.d ##20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992.w #25	ENSGT00940000163020.z #26	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Monodontidae	ANCESTRAL SPECIES	19	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00960000186859	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000163020.z #26	ENSGT00390000016992.w #25	ENSGT00940000154783.f.d.a #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.q.a #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00390000016992.x #25	ENSGT00940000161397 #24	ENSGT00940000163020.y #26	ENSGT00530000063582.a #27	ENSGT00950000185382	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Beluga whale	MODERN SPECIES	139	G6PD (ENSDLEG00000011468) #9	IKBKG (ENSDLEG00000011500) #10	ENSDLEG00000011523	ENSDLEG00000011545	GAB3 (ENSDLEG00000011559) #12	DKC1 (ENSDLEG00000011603) #13	MPP1 (ENSDLEG00000011647) #14	F8 (ENSDLEG00000011690) #16	ENSDLEG00000011965 #26	ENSDLEG00000011977 #25	FUNDC2 (ENSDLEG00000011985) #17	CMC4 (ENSDLEG00000011999) #18	MTCP1 (ENSDLEG00000012008) #19	BRCC3 (ENSDLEG00000012025) #20	ENSDLEG00000012046 #21	VBP1 (ENSDLEG00000012075) #22	RAB39B (ENSDLEG00000012091) #23	ENSDLEG00000012094 #25	CLIC2 (ENSDLEG00000012100) #24	TMLHE (ENSDLEG00000012114) #27	ENSDLEG00000012124	SPRY3 (ENSDLEG00000012130) #28	VAMP7 (ENSDLEG00000012138) #29
Narwhal	MODERN SPECIES	310		ENSMMNG00015013602	ENSMMNG00015013606	GAB3 (ENSMMNG00015013614) #12	DKC1 (ENSMMNG00015013634) #13	MPP1 (ENSMMNG00015013674) #14	SMIM9 (ENSMMNG00015013706) #15	F8 (ENSMMNG00015013732) #16	ENSMMNG00015013765 #26	ENSMMNG00015013774 #17	ENSMMNG00015013784	CMC4 (ENSMMNG00015013793) #18	MTCP1 (ENSMMNG00015013799) #19	BRCC3 (ENSMMNG00015013819) #20	ENSMMNG00015013846 #21	VBP1 (ENSMMNG00015013861) #22	RAB39B (ENSMMNG00015013876) #23	CLIC2 (ENSMMNG00015013884) #24	ENSMMNG00015013897 #26	TMLHE (ENSMMNG00015013910) #27	ENSMMNG00015013925	SPRY3 (ENSMMNG00015013931) #28	VAMP7 (ENSMMNG00015013948) #29	DUSP22 (ENSMMNG00015013987)	IRF4 (ENSMMNG00015014004)	EXOC2 (ENSMMNG00015014030)	FOXF2 (ENSMMNG00015014085)	FOXC1 (ENSMMNG00015014093)	GMDS (ENSMMNG00015014105)	ENSMMNG00015010189	MYLK4 (ENSMMNG00015010218)
Vaquita	MODERN SPECIES	34	ENSPSNG00000022407	ENSPSNG00000022414	ENSPSNG00000022416 ##11	GAB3 (ENSPSNG00000022421) #12	DKC1 (ENSPSNG00000022426) #13	MPP1 (ENSPSNG00000022439) #14	SMIM9 (ENSPSNG00000022452) #15	F8 (ENSPSNG00000022465) #16	ENSPSNG00000022473 #26	ENSPSNG00000022476 #25	ENSPSNG00000022480 #17	MTCP1 (ENSPSNG00000022484) #19	CMC4 (ENSPSNG00000013473) #18	BRCC3 (ENSPSNG00000013597) ##20	ENSPSNG00000013729 #21	VBP1 (ENSPSNG00000013871) #22	RAB39B (ENSPSNG00000014023) #23	ENSPSNG00000014068 #25	CLIC2 (ENSPSNG00000014084) #24	ENSPSNG00000014126 #26	TMLHE (ENSPSNG00000014201) #27	ENSPSNG00000014251	ENSPSNG00000014269	SPRY3 (ENSPSNG00000014299) #28	VAMP7 (ENSPSNG00000014345) #29
Dolphin	MODERN SPECIES	6143																VBP1 (ENSTTRG00000016258) #22	RAB39B (ENSTTRG00000016260) #23
Blue whale	MODERN SPECIES	40	IKBKG (ENSBMSG00010021344) #10	ENSBMSG00010021370	ENSBMSG00010021382	ENSBMSG00010021407 #12	DKC1 (ENSBMSG00010021430) #13	MPP1 (ENSBMSG00010021484) #14	SMIM9 (ENSBMSG00010021513) #15	F8 (ENSBMSG00010021526) #16	ENSBMSG00010021588 #26	ENSBMSG00010021592 #25	ENSBMSG00010021604 #17	CMC4 (ENSBMSG00010021610) #18	MTCP1 (ENSBMSG00010021613) #19	BRCC3 (ENSBMSG00010021621) ##20	ENSBMSG00010021641 #21	VBP1 (ENSBMSG00010021651) #22	RAB39B (ENSBMSG00010021663) #23	ENSBMSG00010021665 #25	ENSBMSG00010021668 #26	CLIC2 (ENSBMSG00010021672) #24	ENSBMSG00010021679 #26	TMLHE (ENSBMSG00010021682) #27	ENSBMSG00010021687	SPRY3 (ENSBMSG00010021692) #28	VAMP7 (ENSBMSG00010021700) #29
Camelidae	ANCESTRAL SPECIES	107				ENSGT00410000025802.h.d #11	ENSGT00410000025802.g.b.b ##11	ENSGT00410000025802.h.c #11	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00940000160294 #16	ENSGT00940000154783.f #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360.r.d ##20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000163020 #26	ENSGT00940000161397 #24	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Arabian camel	MODERN SPECIES	204	IKBKG (ENSCDRG00005016363) #10	ENSCDRG00005016489	ENSCDRG00005016521 ##11	ENSCDRG00005016563 #11	ENSCDRG00005016586 ##11	GAB3 (ENSCDRG00005016636) #12	ENSCDRG00005017097 #11	DKC1 (ENSCDRG00005017117) #13	MPP1 (ENSCDRG00005017184) #14	SMIM9 (ENSCDRG00005017392) #15	F8 (ENSCDRG00005017422) #16	ENSCDRG00005017538 #17	CMC4 (ENSCDRG00005017574) #18	MTCP1 (ENSCDRG00005017604) #19	BRCC3 (ENSCDRG00005017635) ##20	VBP1 (ENSCDRG00005017794) #22	RAB39B (ENSCDRG00005017901) #23	ENSCDRG00005018049 #26	CLIC2 (ENSCDRG00005018062) #24	TMLHE (ENSCDRG00005018097) #27	SPRY3 (ENSCDRG00005018145) #28	VAMP7 (ENSCDRG00005018159) #29	ENSCDRG00005018222
Alpaca	MODERN SPECIES	5665																VBP1 (ENSVPAG00000010239) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000018904 #22
Common shrew	MODERN SPECIES	3870																ENSSARG00000004386 #22
Hedgehog	MODERN SPECIES	5011																ENSEEUG00000006520 #22
Atlantogenata	ANCESTRAL SPECIES	70	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Afrotheria	ANCESTRAL SPECIES	82	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Tenrec	MODERN SPECIES	4843																VBP1 (ENSETEG00000017655) #22
Afrotheria_a	ANCESTRAL SPECIES	81	ENSGT00950000183004.a.a.a.b #8	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00390000005685 #15	ENSGT00390000016992 #25	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00940000163020 #26	ENSGT00530000063582.a #27	ENSGT00950000183055.a.b #28	ENSGT00510000047733 #29
Hyrax	MODERN SPECIES	4106																VBP1 (ENSPCAG00000003262) #22
Elephant	MODERN SPECIES	50	FAM3A (ENSLAFG00000032131) #8	G6PD (ENSLAFG00000010694) #9	IKBKG (ENSLAFG00000026529) #10	ENSLAFG00000010146	ENSLAFG00000028603	GAB3 (ENSLAFG00000001708) #12	DKC1 (ENSLAFG00000000221) #13	MPP1 (ENSLAFG00000011928) #14	SMIM9 (ENSLAFG00000032056) #15	ENSLAFG00000003610 #25	F8 (ENSLAFG00000015274) #16	ENSLAFG00000015289 #17	CMC4 (ENSLAFG00000020599) #18	MTCP1 (ENSLAFG00000028512) #19	BRCC3 (ENSLAFG00000013564) #20	VBP1 (ENSLAFG00000016507) #22	RAB39B (ENSLAFG00000030959) #23	CLIC2 (ENSLAFG00000011243) #24	ENSLAFG00000032481 #26	TMLHE (ENSLAFG00000011892) #27	ENSLAFG00000012249	SPRY3 (ENSLAFG00000029407) #28	VAMP7 (ENSLAFG00000018052) #29	ENSLAFG00000027692
Xenarthra	ANCESTRAL SPECIES	1495																ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3500													ENSDNOG00000039370	HMBOX1 (ENSDNOG00000031840)	INTS9 (ENSDNOG00000003821)	ENSDNOG00000034956 #22	EXTL3 (ENSDNOG00000018822)
Armadillo	MODERN SPECIES	2293																VBP1 (ENSDNOG00000044322) #22	RAB39B (ENSDNOG00000033622) #23	CLIC2 (ENSDNOG00000030705) #24
Marsupialia	ANCESTRAL SPECIES	39	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000000950.c.a.g	ENSGT01030000240148	ENSGT01100000263574.b.j.b.b.a	ENSGT01100000263570.B.z	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00390000017860.a.a	ENSGT00510000047733 #29	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00940000162502	ENSGT00940000153700.jc.a.a.a.a
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES	35	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000000950.c.a.g	ENSGT01030000240148	ENSGT01100000263574.b.j.b.b.a	ENSGT01100000263570.B.z	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.xb #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00390000017860.a.a	ENSGT00510000047733 #29	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00940000162502	ENSGT00940000153700.jc.a.a.a.a
Diprotodontia	ANCESTRAL SPECIES	79	ENSGT00950000183004.a.a.a.b #8	ENSGT00940000165180	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000000950.c.a.g	ENSGT01030000240148	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.xb #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00390000017860.a.a	ENSGT00510000047733 #29	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00940000162502
Wallaby	MODERN SPECIES	6123																ENSMEUG00000013498 #22
Diprotodontia_a	ANCESTRAL SPECIES	74	ENSGT00950000183004.a.a.a.b #8	ENSGT00940000165180	ENSGT00530000063435.a #9	ENSGT00530000063808.a #10	ENSGT00390000000950.c.a.g	ENSGT01030000240148	ENSGT00940000159803 #12	ENSGT00510000047092 #13	ENSGT00940000158744 #14	ENSGT00940000160294 #16	ENSGT00940000154783 #17	ENSGT00390000012647 #18	ENSGT00390000006885.a #19	ENSGT00390000000360 #20	ENSGT00950000183068.a.a #21	ENSGT00390000018904.xb #22	ENSGT00940000158132 #23	ENSGT00940000161397 #24	ENSGT00390000016992 #25	ENSGT00390000017860.a.a	ENSGT00510000047733 #29	ENSGT00950000183055.a.b #28	ENSGT00530000063582.a #27	ENSGT00940000162502
koala	MODERN SPECIES	275	SLC10A3 (ENSPCIG00000027130) #7	FAM3A (ENSPCIG00000027132) #8	ENSPCIG00000009019	G6PD (ENSPCIG00000003610) #9	IKBKG (ENSPCIG00000027137) #10	ENSPCIG00000027140	GAB3 (ENSPCIG00000027141) #12	DKC1 (ENSPCIG00000016706) #13	MPP1 (ENSPCIG00000016705) #14	F8 (ENSPCIG00000029339) #16	FUNDC2 (ENSPCIG00000029338) #17	CMC4 (ENSPCIG00000012830) #18	MTCP1 (ENSPCIG00000029337) #19	ENSPCIG00000029336 #20	ENSPCIG00000029335 #21	ENSPCIG00000029334 #22	RAB39B (ENSPCIG00000029333) #23	ENSPCIG00000029332 #24	ENSPCIG00000029331 #25	ENSPCIG00000021211	VAMP7 (ENSPCIG00000021213) #29	SPRY3 (ENSPCIG00000029329) #28	TMLHE (ENSPCIG00000029328) #27	ENSPCIG00000029323	ENSPCIG00000032358
Common wonbat	MODERN SPECIES	1065	SLC10A3 (ENSVURG00010018859) #7	FAM3A (ENSVURG00010018864) #8	ENSVURG00010018900	G6PD (ENSVURG00010019009) #9	IKBKG (ENSVURG00010019077) #10	ENSVURG00010019093	ENSVURG00010019100	GAB3 (ENSVURG00010019104) #12	DKC1 (ENSVURG00010019113) #13	MPP1 (ENSVURG00010019129) #14	F8 (ENSVURG00010019188) #16	FUNDC2 (ENSVURG00010019480) #17	MTCP1 (ENSVURG00010019490) #19	ENSVURG00010019499 #20	ENSVURG00010019511 #21	ENSVURG00010019523 #22	RAB39B (ENSVURG00010019528) #23
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	21	FAM3A (ENSSHAG00000021982) #8	G6PD (ENSSHAG00000002307) #9	IKBKG (ENSSHAG00000003200) #10	ENSSHAG00000004297	ENSSHAG00000004769	ENSSHAG00000005407	GAB3 (ENSSHAG00000005588) #12	ENSSHAG00000000766	ENSSHAG00000002463 #13	MPP1 (ENSSHAG00000003104) #14	ENSSHAG00000000596 #16	FUNDC2 (ENSSHAG00000004767) #17	ENSSHAG00000031991 #18	ENSSHAG00000005392 #20	ENSSHAG00000000499 #21	ENSSHAG00000002823 #22	RAB39B (ENSSHAG00000023435) #23	ENSSHAG00000030857	ENSSHAG00000002237 #24	ENSSHAG00000003431	ENSSHAG00000027010	ENSSHAG00000005274 #29	ENSSHAG00000027931 #28	ENSSHAG00000005076 #27	ENSSHAG00000028680	ENSSHAG00000023544	ENSSHAG00000028800	ENSSHAG00000021768	ENSSHAG00000023175	ENSSHAG00000006338	ENSSHAG00000000642
Tasmanian devil	MODERN SPECIES	1	RMND5A (ENSSHAG00000030636)	ENSSHAG00000020804	ENSSHAG00000011323	ENSSHAG00000011087	SMYD1 (ENSSHAG00000010661)	ENSSHAG00000028702	THNSL2 (ENSSHAG00000010329)	ENSSHAG00000031961	EIF2AK3 (ENSSHAG00000006749)	RPIA (ENSSHAG00000005630)	ENSSHAG00000030729	ENSSHAG00000029792	ENSSHAG00000023582	ENSSHAG00000027293	ENSSHAG00000031779	ENSSHAG00000003358 #22	ENSSHAG00000026234	ENSSHAG00000026213	ENSSHAG00000001270	ENSSHAG00000024694	ENSSHAG00000031551	ENSSHAG00000023886	ENSSHAG00000030381	ENSSHAG00000030405	ENSSHAG00000029437	ENSSHAG00000023870	ENSSHAG00000024772	ENSSHAG00000021435	ENSSHAG00000029023	ENSSHAG00000002894	ENSSHAG00000026319
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880	ENSGT00390000003114.e.b.b	ENSGT00940000160520	ENSGT00510000048725	ENSGT00940000157911	ENSGT00390000008295.b	ENSGT00390000001827	ENSGT00940000159099	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a	ENSGT00950000182836.b.b.b.a.b	ENSGT00940000157537	ENSGT00390000018904.yb #22	ENSGT00940000155365.a.a	ENSGT00940000160695	ENSGT00420000029769.a	ENSGT00390000007888.a	ENSGT00940000157337	ENSGT00390000007888.b	ENSGT01100000263542.A	ENSGT00500000044921.b	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00500000045044	ENSGT00940000157288	ENSGT00940000157858	ENSGT00390000013474.b.b	ENSGT00940000160267
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880	ENSGT00390000003114.e.b.b	ENSGT00940000160520	ENSGT00510000048725	ENSGT00940000157911	ENSGT00390000008295.b	ENSGT00390000001827	ENSGT00940000159099	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a	ENSGT00950000182836.b.b.b.a.b	ENSGT00940000157537	ENSGT00390000018904.yb #22	ENSGT00940000155365.a.a	ENSGT00940000160695	ENSGT00420000029769.a	ENSGT00390000007888.a	ENSGT00940000157337	ENSGT00390000007888.b	ENSGT01100000263542.A	ENSGT00500000044921.b	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00500000045044	ENSGT00940000157288	ENSGT00940000157858	ENSGT00390000013474.b.b	ENSGT00940000160267
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880	ENSGT00390000003114.e.b.b	ENSGT00940000160520	ENSGT00510000048725	ENSGT00940000157911	ENSGT00390000008295.b	ENSGT00390000001827	ENSGT00940000159099	ENSGT00390000012832	ENSGT00390000012495	ENSGT00390000016277.a	ENSGT00950000182836.b.b.b.a.b	ENSGT00940000157537	ENSGT00390000018904.yb #22	ENSGT00940000155365.a.a	ENSGT00940000160695	ENSGT00420000029769.a	ENSGT00390000007888.a.a	ENSGT00940000157337	ENSGT00390000007888.b.b	ENSGT01100000263542.A	ENSGT00500000044921.b	ENSGT00940000157845	ENSGT00940000159017.a.a	ENSGT00500000045044	ENSGT00940000157288	ENSGT00940000157858	ENSGT00390000013474.b.b	ENSGT00940000160267
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1036	TGFBR2 (ENSVURG00010022559)	ENSVURG00010022566	ENSVURG00010022605	ENSVURG00010022813	ENSVURG00010022827	ENSVURG00010022833	ENSVURG00010022835	ENSVURG00010022838	ENSVURG00010022841	ENSVURG00010022857	ENSVURG00010022880	ENSVURG00010022890	ENSVURG00010022923	ENSVURG00010022932	ENSVURG00010022941	ENSVURG00010022950 #22	ENSVURG00010022957	ENSVURG00010022965	ENSVURG00010022973	ENSVURG00010022980	ENSVURG00010022986	ENSVURG00010022994	ENSVURG00010023007	ENSVURG00010023021	ENSVURG00010023026	ENSVURG00010023031	ENSVURG00010023036	ENSVURG00010023039	ENSVURG00010023046	ENSVURG00010023054	ENSVURG00010023062
Common wonbat	MODERN SPECIES	1036	ENSVURG00010017145	ENSVURG00010017255	ENSVURG00010018369	ENSVURG00010018390	ENSVURG00010018394	ENSVURG00010018401	ENSVURG00010018408	ENSVURG00010018413	ENSVURG00010018418	ENSVURG00010018438	ENSVURG00010018470	ENSVURG00010018480	ENSVURG00010018541	ENSVURG00010018548	ENSVURG00010018559	ENSVURG00010018570 #22	ENSVURG00010018576	ENSVURG00010018578	ENSVURG00010018580	ENSVURG00010018588	ENSVURG00010018595	ENSVURG00010018602	ENSVURG00010018618	ENSVURG00010018692	ENSVURG00010018701	ENSVURG00010018714	ENSVURG00010018732	ENSVURG00010018740	ENSVURG00010018752	ENSVURG00010018761	ENSVURG00010018768
koala	MODERN SPECIES	50	TGFBR2 (ENSPCIG00000017985)	GADL1 (ENSPCIG00000017987)	STT3B (ENSPCIG00000017991)	OSBPL10 (ENSPCIG00000017992)	GPD1L (ENSPCIG00000026138)	CMTM8 (ENSPCIG00000026139)	CMTM7 (ENSPCIG00000026140)	CMTM6 (ENSPCIG00000026142)	DYNC1LI1 (ENSPCIG00000026143)	CNOT10 (ENSPCIG00000026148)	TRIM71 (ENSPCIG00000026155)	TCAIM (ENSPCIG00000026159)	TOPAZ1 (ENSPCIG00000026161)	ABHD5 (ENSPCIG00000017796)	ENSPCIG00000017793	ENSPCIG00000017791 #22	ANO10 (ENSPCIG00000017789)	SNRK (ENSPCIG00000017788)	POMGNT2 (ENSPCIG00000017784)	GASK1A (ENSPCIG00000004107)	ENSPCIG00000010324	ENTPD3 (ENSPCIG00000003518)	ENSPCIG00000032473	GGCT (ENSPCIG00000037416)	NOD1 (ENSPCIG00000006834)	ZNRF2 (ENSPCIG00000022316)	MTURN (ENSPCIG00000022309)	PLEKHA8 (ENSPCIG00000022307)	FKBP14 (ENSPCIG00000006908)	SCRN1 (ENSPCIG00000019775)	WIPF3 (ENSPCIG00000034566)
Tasmanian devil	MODERN SPECIES	4	RBMS3 (ENSSHAG00000002411)	TGFBR2 (ENSSHAG00000020646)	GADL1 (ENSSHAG00000013123)	STT3B (ENSSHAG00000015602)	OSBPL10 (ENSSHAG00000015717)	GPD1L (ENSSHAG00000029429)	CMTM8 (ENSSHAG00000016796)	CMTM7 (ENSSHAG00000032359)	ENSSHAG00000027248	DYNC1LI1 (ENSSHAG00000017026)	ENSSHAG00000017280	ENSSHAG00000021944	ENSSHAG00000017580	ENSSHAG00000017638	ENSSHAG00000030874	ENSSHAG00000031972 #22	ENSSHAG00000018334	ENSSHAG00000018357	SNRK (ENSSHAG00000018518)	POMGNT2 (ENSSHAG00000003748)	ENSSHAG00000023966	ENSSHAG00000027107	ENSSHAG00000001591	ENSSHAG00000021130	ENSSHAG00000027969	ENSSHAG00000028562	ZNRF2 (ENSSHAG00000022515)	MTURN (ENSSHAG00000023838)	PLEKHA8 (ENSSHAG00000002747)	FKBP14 (ENSSHAG00000029085)	SCRN1 (ENSSHAG00000004467)
Sauria	ANCESTRAL SPECIES	21	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000165066	ENSGT01100000265326	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a
Archelosauria	ANCESTRAL SPECIES	24	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Archosauria	ANCESTRAL SPECIES	15	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Aves	ANCESTRAL SPECIES	23	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Neognathae	ANCESTRAL SPECIES	22	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Galloanserae	ANCESTRAL SPECIES	21	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000165066	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983
Anatidae	ANCESTRAL SPECIES	89	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a
Duck	MODERN SPECIES	1	CUL4B (ENSAPLG00000009282)	ENSAPLG00000009809	ENSAPLG00000001693	GRIA3 (ENSAPLG00000009833)	THOC2 (ENSAPLG00000010614)	ENSAPLG00000025556	XIAP (ENSAPLG00000011039)	STAG2 (ENSAPLG00000011118)	SH2D1A (ENSAPLG00000012436)	TENM1 (ENSAPLG00000012443)	ENSAPLG00000028319	ENSAPLG00000020073	SMARCA1 (ENSAPLG00000013149)	GAB3 (ENSAPLG00000013810) #12	ENSAPLG00000014048 #21	VBP1 (ENSAPLG00000014527) #22	RAB39B (ENSAPLG00000014543) #23	ENSAPLG00000014564	ENSAPLG00000014694	PSMD10 (ENSAPLG00000014713)
Pink-footed goose	MODERN SPECIES	96															ENSABRG00000015046 #21	VBP1 (ENSABRG00000015050) #22	RAB39B (ENSABRG00000015057) #23	ENSABRG00000015060	ENSABRG00000015068	ATG4A (ENSABRG00000015074)	PSMD10 (ENSABRG00000015141)	COL4A6 (ENSABRG00000015160)	ENSABRG00000015232	IRS4 (ENSABRG00000015239)	NXT2 (ENSABRG00000015252)	KCNE5 (ENSABRG00000015256)	ACSL4 (ENSABRG00000015265)	TMEM164 (ENSABRG00000015382)	AMMECR1 (ENSABRG00000015387)	CHRDL1 (ENSABRG00000015452)	PAK3 (ENSABRG00000015488)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00950000183003.a.a.a.b	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132.d #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Phasianidae_b	ANCESTRAL SPECIES	27	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00950000183003.a.a.a.b	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT01030000236254	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132.d #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Turkey	MODERN SPECIES	29	CUL4B (ENSMGAG00000007563)	ENSMGAG00000007561	ENSMGAG00000016867	ENSMGAG00000015394	ENSMGAG00000022442	GRIA3 (ENSMGAG00000007420)	THOC2 (ENSMGAG00000007345)	XIAP (ENSMGAG00000007311)	ENSMGAG00000021906	STAG2 (ENSMGAG00000007209)	SH2D1A (ENSMGAG00000018308)	TENM1 (ENSMGAG00000007089)	SMARCA1 (ENSMGAG00000007042)	ENSMGAG00000007000 #12	ENSMGAG00000006921 #21	ENSMGAG00000006902 #22	ENSMGAG00000015819 #23	VSIG1 (ENSMGAG00000006860)	PSMD10 (ENSMGAG00000006855)	ENSMGAG00000006877	ATG4A (ENSMGAG00000006815)	ENSMGAG00000019698	COL4A6 (ENSMGAG00000006631)	ENSMGAG00000021353	IRS4 (ENSMGAG00000006610)	NXT2 (ENSMGAG00000021175)	ACSL4 (ENSMGAG00000006550)	TMEM164 (ENSMGAG00000006530)	AMMECR1 (ENSMGAG00000006524)	CHRDL1 (ENSMGAG00000006501)	PAK3 (ENSMGAG00000006412)
Japanese quail	MODERN SPECIES	22	CUL4B (ENSCJPG00005018794)	ENSCJPG00005018792	ENSCJPG00005018790	ENSCJPG00005018787	ENSCJPG00005018786	GRIA3 (ENSCJPG00005018784)	THOC2 (ENSCJPG00005018783)	XIAP (ENSCJPG00005018782)	STAG2 (ENSCJPG00005018779)	SH2D1A (ENSCJPG00005018778)	TENM1 (ENSCJPG00005017430)	ENSCJPG00005017371	SMARCA1 (ENSCJPG00005017238)	GAB3 (ENSCJPG00005017234) #12	ENSCJPG00005017232 #21	VBP1 (ENSCJPG00005017231) #22	RAB39B (ENSCJPG00005017230) #23	ENSCJPG00005017229	VSIG1 (ENSCJPG00005017228)	PSMD10 (ENSCJPG00005017227)	ATG4A (ENSCJPG00005017226)	COL4A6 (ENSCJPG00005017225)	ENSCJPG00005017223	IRS4 (ENSCJPG00005017222)	NXT2 (ENSCJPG00005017221)	KCNE5 (ENSCJPG00005017220)	ACSL4 (ENSCJPG00005017219)	TMEM164 (ENSCJPG00005017218)	AMMECR1 (ENSCJPG00005017217)	CHRDL1 (ENSCJPG00005017216)	PAK3 (ENSCJPG00005017215)
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Neognathae_c	ANCESTRAL SPECIES	29	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a
Kakapo	MODERN SPECIES	1	TMEM255A (ENSSHBG00005015003)	ATP1B4 (ENSSHBG00005015015)	LAMP2 (ENSSHBG00005015025)	CUL4B (ENSSHBG00005015038)	ENSSHBG00005015052	ENSSHBG00005015058	GRIA3 (ENSSHBG00005015072)	THOC2 (ENSSHBG00005000827)	XIAP (ENSSHBG00005000840)	STAG2 (ENSSHBG00005017175)	SH2D1A (ENSSHBG00005017751)	TENM1 (ENSSHBG00005018127)	SMARCA1 (ENSSHBG00005020233)	GAB3 (ENSSHBG00005020239) #12	ENSSHBG00005020244 #21	VBP1 (ENSSHBG00005020255) #22	RAB39B (ENSSHBG00005020258) #23	ENSSHBG00005020266	VSIG1 (ENSSHBG00005020285)	PSMD10 (ENSSHBG00005020289)	ATG4A (ENSSHBG00005020293)	ZNF711 (ENSSHBG00005020297)	ENSSHBG00005020304	DACH2 (ENSSHBG00005020309)	KLHL4 (ENSSHBG00005020316)	ENSSHBG00005020321	DIAPH2 (ENSSHBG00005020340)	PCDH19 (ENSSHBG00005020369)	TNMD (ENSSHBG00005020374)	TSPAN6 (ENSSHBG00005020380)	SRPX2 (ENSSHBG00005020391)
Golden eagle	MODERN SPECIES	13	TMEM255A (ENSACCG00020010074)	ATP1B4 (ENSACCG00020010091)	LAMP2 (ENSACCG00020010106)	CUL4B (ENSACCG00020010259)	ENSACCG00020010379	ENSACCG00020010388	GRIA3 (ENSACCG00020010412)	THOC2 (ENSACCG00020010466)	XIAP (ENSACCG00020010528)	STAG2 (ENSACCG00020010547)	SH2D1A (ENSACCG00020010570)	TENM1 (ENSACCG00020010596)	SMARCA1 (ENSACCG00020010631)	GAB3 (ENSACCG00020010652) #12	ENSACCG00020010694 #21	VBP1 (ENSACCG00020010736) #22	RAB39B (ENSACCG00020010745) #23	ENSACCG00020010756	VSIG1 (ENSACCG00020010778)	PSMD10 (ENSACCG00020010788)	ATG4A (ENSACCG00020010795)	ENSACCG00020010814	ENSACCG00020010840	ENSACCG00020010890	IRS4 (ENSACCG00020010943)	NXT2 (ENSACCG00020010962)	KCNE5 (ENSACCG00020010970)	ACSL4 (ENSACCG00020010991)	TMEM164 (ENSACCG00020011009)	AMMECR1 (ENSACCG00020011017)	CHRDL1 (ENSACCG00020011029)
Passeriformes	ANCESTRAL SPECIES	33	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Passeriformes_d	ANCESTRAL SPECIES	34	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Passeriformes_g	ANCESTRAL SPECIES	23	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a.u	ENSGT00940000153991.a.a.t	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Passeroidea	ANCESTRAL SPECIES	25	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a.u	ENSGT00940000153991.a.a.t	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Common canary	MODERN SPECIES	13	ATP1B4 (ENSSCAG00000016949)	LAMP2 (ENSSCAG00000016945)	CUL4B (ENSSCAG00000016942)	ENSSCAG00000016939	ENSSCAG00000016938	ENSSCAG00000016937	GRIA3 (ENSSCAG00000016935)	THOC2 (ENSSCAG00000016892)	XIAP (ENSSCAG00000016875)	STAG2 (ENSSCAG00000016873)	SH2D1A (ENSSCAG00000016872)	TENM1 (ENSSCAG00000016821)	SMARCA1 (ENSSCAG00000016753)	GAB3 (ENSSCAG00000016748) #12	ENSSCAG00000016740 #21	VBP1 (ENSSCAG00000016737) #22	RAB39B (ENSSCAG00000016736) #23	ENSSCAG00000016734	VSIG1 (ENSSCAG00000016733)	PSMD10 (ENSSCAG00000016730)	ATG4A (ENSSCAG00000016726)	ENSSCAG00000016721	COL4A6 (ENSSCAG00000016714)	ENSSCAG00000016704	ENSSCAG00000016701	NXT2 (ENSSCAG00000016697)	ACSL4 (ENSSCAG00000016689)	TMEM164 (ENSSCAG00000016680)	AMMECR1 (ENSSCAG00000016676)	CHRDL1 (ENSSCAG00000016663)	PAK3 (ENSSCAG00000016644)
Zebra finch	MODERN SPECIES	26	TMEM255A (ENSTGUG00000003447)	ATP1B4 (ENSTGUG00000003461)	LAMP2 (ENSTGUG00000003483)	CUL4B (ENSTGUG00000003508)	MCTS1 (ENSTGUG00000003338)	ENSTGUG00000026851	GRIA3 (ENSTGUG00000003563)	THOC2 (ENSTGUG00000003682)	XIAP (ENSTGUG00000003713)	STAG2 (ENSTGUG00000003722)	SH2D1A (ENSTGUG00000003791)	TENM1 (ENSTGUG00000003800)	SMARCA1 (ENSTGUG00000003899)	GAB3 (ENSTGUG00000003950) #12	ENSTGUG00000003960 #21	VBP1 (ENSTGUG00000004011) #22	RAB39B (ENSTGUG00000019747) #23	ENSTGUG00000022993	VSIG1 (ENSTGUG00000004066)	PSMD10 (ENSTGUG00000029282)	ATG4A (ENSTGUG00000004088)	COL4A6 (ENSTGUG00000004100)	COL4A5 (ENSTGUG00000004144)	IRS4 (ENSTGUG00000022416)	NXT2 (ENSTGUG00000023121)	ACSL4 (ENSTGUG00000004291)	TMEM164 (ENSTGUG00000019246)	AMMECR1 (ENSTGUG00000004360)	ENSTGUG00000004384	CHRDL1 (ENSTGUG00000004370)	RNF128 (ENSTGUG00000004446)
Medium ground finch	MODERN SPECIES	17	ATP1B4 (ENSGFOG00000014147)	LAMP2 (ENSGFOG00000014149)	CUL4B (ENSGFOG00000014151)	ENSGFOG00000014155	ENSGFOG00000014157	GRIA3 (ENSGFOG00000014158)	THOC2 (ENSGFOG00000014162)	XIAP (ENSGFOG00000014166)	STAG2 (ENSGFOG00000014170)	SH2D1A (ENSGFOG00000014186)	TENM1 (ENSGFOG00000014248)	ENSGFOG00000014449	SMARCA1 (ENSGFOG00000014450)	GAB3 (ENSGFOG00000014462) #12	ENSGFOG00000014469 #21	VBP1 (ENSGFOG00000014488) #22	RAB39B (ENSGFOG00000014490) #23	ENSGFOG00000014493	VSIG1 (ENSGFOG00000014497)	ENSGFOG00000014499	ATG4A (ENSGFOG00000014504)	ENSGFOG00000014512	ENSGFOG00000014527	COL4A5 (ENSGFOG00000014530)	ENSGFOG00000014550	NXT2 (ENSGFOG00000014551)	ACSL4 (ENSGFOG00000014553)	TMEM164 (ENSGFOG00000014560)	AMMECR1 (ENSGFOG00000014563)	CHRDL1 (ENSGFOG00000014565)	PAK3 (ENSGFOG00000014570)
Flycatcher	MODERN SPECIES	23	LAMP2 (ENSFALG00000001540)	CUL4B (ENSFALG00000001535)	ENSFALG00000027960	ENSFALG00000014562	GRIA3 (ENSFALG00000001524)	ENSFALG00000027751	THOC2 (ENSFALG00000001519)	ENSFALG00000024298	XIAP (ENSFALG00000001515)	STAG2 (ENSFALG00000001510)	SH2D1A (ENSFALG00000026386)	TENM1 (ENSFALG00000001486)	SMARCA1 (ENSFALG00000000209)	ENSFALG00000000207 #12	ENSFALG00000000204 #21	ENSFALG00000000202 #22	RAB39B (ENSFALG00000026366) #23	ENSFALG00000000199	VSIG1 (ENSFALG00000000195)	PSMD10 (ENSFALG00000023964)	ATG4A (ENSFALG00000000192)	COL4A6 (ENSFALG00000000187)	COL4A5 (ENSFALG00000000185)	ENSFALG00000000180	NXT2 (ENSFALG00000000178)	ENSFALG00000023004	ACSL4 (ENSFALG00000000173)	TMEM164 (ENSFALG00000000168)	AMMECR1 (ENSFALG00000026986)	ENSFALG00000000157	VMA21 (ENSFALG00000012151)
Great tit	MODERN SPECIES	24	ATP1B4 (ENSPMJG00000011382)	LAMP2 (ENSPMJG00000011383)	CUL4B (ENSPMJG00000011384)	ENSPMJG00000011385	ENSPMJG00000011386	GRIA3 (ENSPMJG00000011390)	THOC2 (ENSPMJG00000011391)	XIAP (ENSPMJG00000011392)	STAG2 (ENSPMJG00000011393)	SH2D1A (ENSPMJG00000011394)	TENM1 (ENSPMJG00000011395)	ENSPMJG00000011400	SMARCA1 (ENSPMJG00000011402)	GAB3 (ENSPMJG00000011403) #12	ENSPMJG00000011404 #21	VBP1 (ENSPMJG00000011405) #22	RAB39B (ENSPMJG00000011406) #23	ENSPMJG00000011407	VSIG1 (ENSPMJG00000011408)	PSMD10 (ENSPMJG00000011409)	ATG4A (ENSPMJG00000011410)	ENSPMJG00000011411	COL4A5 (ENSPMJG00000011412)	IRS4 (ENSPMJG00000011413)	NXT2 (ENSPMJG00000011414)	ENSPMJG00000011415	ACSL4 (ENSPMJG00000011416)	ENSPMJG00000011417	RNF128 (ENSPMJG00000011418)	TBC1D8B (ENSPMJG00000011419)	ENSPMJG00000011420
African ostrich	MODERN SPECIES	993													SMARCA1 (ENSSCUG00000018570)	GAB3 (ENSSCUG00000018566) #12	ENSSCUG00000018561 #21	VBP1 (ENSSCUG00000018559) #22	RAB39B (ENSSCUG00000018558) #23	ENSSCUG00000018556	VSIG1 (ENSSCUG00000018555)	PSMD10 (ENSSCUG00000018553)	ATG4A (ENSSCUG00000018549)	COL4A6 (ENSSCUG00000018546)	ENSSCUG00000018542	IRS4 (ENSSCUG00000018541)	NXT2 (ENSSCUG00000018537)	ACSL4 (ENSSCUG00000018536)	TMEM164 (ENSSCUG00000018534)	AMMECR1 (ENSSCUG00000018533)	CHRDL1 (ENSSCUG00000018531)	PAK3 (ENSSCUG00000018529)	CAPN6 (ENSSCUG00000018528)
Australian saltwater crocodile	MODERN SPECIES	43													SMARCA1 (ENSCPRG00005009144)	GAB3 (ENSCPRG00005008988) #12	ENSCPRG00005008967 #21	VBP1 (ENSCPRG00005008958) #22	RAB39B (ENSCPRG00005008955) #23	ENSCPRG00005008948	VSIG1 (ENSCPRG00005008942)	PSMD10 (ENSCPRG00005008938)	ATG4A (ENSCPRG00005008917)	COL4A6 (ENSCPRG00005008886)	COL4A5 (ENSCPRG00005008831)	IRS4 (ENSCPRG00005008825)	NXT2 (ENSCPRG00005008815)	ACSL4 (ENSCPRG00005008800)	TMEM164 (ENSCPRG00005008793)	AMMECR1 (ENSCPRG00005008755)	CHRDL1 (ENSCPRG00005008735)	PAK3 (ENSCPRG00005008732)	CAPN6 (ENSCPRG00005008726)
Cryptodira	ANCESTRAL SPECIES	29	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Testudinoidea	ANCESTRAL SPECIES	24	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
Emydidae	ANCESTRAL SPECIES	32	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b
painted turtle	MODERN SPECIES	732													SMARCA1 (ENSCPBG00000001146)	GAB3 (ENSCPBG00000001111) #12	ENSCPBG00000001083 #21	VBP1 (ENSCPBG00000001068) #22	RAB39B (ENSCPBG00000001057) #23	ENSCPBG00000001042	VSIG1 (ENSCPBG00000001010)	PSMD10 (ENSCPBG00000000915)	ATG4A (ENSCPBG00000000890)	COL4A6 (ENSCPBG00000000836)	ENSCPBG00000000696	IRS4 (ENSCPBG00000000674)	NXT2 (ENSCPBG00000000629)	KCNE5 (ENSCPBG00000000617)	ACSL4 (ENSCPBG00000000569)	TMEM164 (ENSCPBG00000000530)	AMMECR1 (ENSCPBG00000000476)	CHRDL1 (ENSCPBG00000000455)	PAK3 (ENSCPBG00000000377)
Three-toed box turtle	MODERN SPECIES	61	ATP1B4 (ENSTMTG00000006963)	LAMP2 (ENSTMTG00000006999)	CUL4B (ENSTMTG00000007138)	ENSTMTG00000009092	ENSTMTG00000009111	ENSTMTG00000009119	GRIA3 (ENSTMTG00000009132)	THOC2 (ENSTMTG00000009327)	XIAP (ENSTMTG00000012282)	STAG2 (ENSTMTG00000012299)	SH2D1A (ENSTMTG00000012382)	TENM1 (ENSTMTG00000012450)	SMARCA1 (ENSTMTG00000012921)	GAB3 (ENSTMTG00000012986) #12	ENSTMTG00000013040 #21	VBP1 (ENSTMTG00000013129) #22	RAB39B (ENSTMTG00000013145) #23	ENSTMTG00000013157	VSIG1 (ENSTMTG00000013187)	PSMD10 (ENSTMTG00000013208)	ATG4A (ENSTMTG00000013222)	COL4A6 (ENSTMTG00000013237)	COL4A5 (ENSTMTG00000013301)	IRS4 (ENSTMTG00000013395)	NXT2 (ENSTMTG00000013403)	KCNE5 (ENSTMTG00000013411)	ACSL4 (ENSTMTG00000013429)	TMEM164 (ENSTMTG00000013462)	AMMECR1 (ENSTMTG00000013475)	CHRDL1 (ENSTMTG00000013500)	PAK3 (ENSTMTG00000013555)
Testudinidae	ANCESTRAL SPECIES	21	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00960000187040	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000165066	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b
Abingdon island giant tortoise	MODERN SPECIES	1317													SMARCA1 (ENSCABG00000020032)	GAB3 (ENSCABG00000020029) #12	ENSCABG00000020013 #21	VBP1 (ENSCABG00000020008) #22	RAB39B (ENSCABG00000020006) #23	ENSCABG00000019999	VSIG1 (ENSCABG00000019993)	PSMD10 (ENSCABG00000019991)	ATG4A (ENSCABG00000019990)	ENSCABG00000019985	IRS4 (ENSCABG00000019983)	NXT2 (ENSCABG00000019981)	KCNE5 (ENSCABG00000019978)	ACSL4 (ENSCABG00000019973)
Goode s thornscrub tortoise	MODERN SPECIES	23	TMEM255A (ENSGEVG00005010313)	ATP1B4 (ENSGEVG00005010019)	LAMP2 (ENSGEVG00005009966)	ENSGEVG00005009831	ENSGEVG00005009800	ENSGEVG00005009775	GRIA3 (ENSGEVG00005009698)	THOC2 (ENSGEVG00005009559)	XIAP (ENSGEVG00005009469)	STAG2 (ENSGEVG00005009377)	SH2D1A (ENSGEVG00005009304)	TENM1 (ENSGEVG00005016383)	SMARCA1 (ENSGEVG00005016269)	GAB3 (ENSGEVG00005016216) #12	ENSGEVG00005016033 #21	VBP1 (ENSGEVG00005015946) #22	RAB39B (ENSGEVG00005015914) #23	ENSGEVG00005015892	VSIG1 (ENSGEVG00005015832)	PSMD10 (ENSGEVG00005015817)	ATG4A (ENSGEVG00005015796)	ENSGEVG00005015766	ENSGEVG00005015736	ENSGEVG00005015631	IRS4 (ENSGEVG00005015611)	NXT2 (ENSGEVG00005015597)	KCNE5 (ENSGEVG00005015562)	ACSL4 (ENSGEVG00005015533)	TMEM164 (ENSGEVG00005015516)	AMMECR1 (ENSGEVG00005015499)	CHRDL1 (ENSGEVG00005015396)
Chinese turtle	MODERN SPECIES	2100											ENSPSIG00000012010	ENSPSIG00000011999	SMARCA1 (ENSPSIG00000010101)	GAB3 (ENSPSIG00000009983) #12	ENSPSIG00000009772 #21	VBP1 (ENSPSIG00000009427) #22	RAB39B (ENSPSIG00000009419) #23	ENSPSIG00000009411	VSIG1 (ENSPSIG00000009404)	PSMD10 (ENSPSIG00000008906)	ATG4A (ENSPSIG00000008342)	COL4A6 (ENSPSIG00000015899)	COL4A5 (ENSPSIG00000007808)	IRS4 (ENSPSIG00000007801)	ENSPSIG00000007215	NXT2 (ENSPSIG00000006737)	ACSL4 (ENSPSIG00000017378)	TMEM164 (ENSPSIG00000017018)	AMMECR1 (ENSPSIG00000016725)	CHRDL1 (ENSPSIG00000015962)	PAK3 (ENSPSIG00000013160)
Lepidosauria	ANCESTRAL SPECIES	30	ENSGT00940000160471	ENSGT01030000234579.B.a	ENSGT00950000182899.B.b	ENSGT00940000155339	ENSGT00550000074964	ENSGT00940000155145	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000160507	ENSGT00940000153404.a	ENSGT00530000063000.a.b.a	ENSGT00940000153991.a.a	ENSGT00940000165066	ENSGT01100000265326	ENSGT00940000162034	ENSGT00940000160883	ENSGT00940000156381	ENSGT00940000155001.A	ENSGT00940000157427	ENSGT00390000007430	ENSGT00390000010397.a
Episquamata	ANCESTRAL SPECIES	14	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000162034	ENSGT01100000265326	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000160507	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297	ENSGT01030000234566.e.b.b.b	ENSGT00940000163684	ENSGT00510000047611	ENSGT00940000157424	ENSGT01100000263484.C.a.k	ENSGT00940000163592	ENSGT01100000263536.B.c.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b
Toxicofera	ANCESTRAL SPECIES	17	ENSGT00940000160983	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000162034	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000160507	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297	ENSGT01030000234566.e.b.b.b	ENSGT00940000163684	ENSGT00510000047611	ENSGT01100000263484.C.a.k	ENSGT00940000163592	ENSGT00990000203619.B	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b	ENSGT00940000161206
Elapidae	ANCESTRAL SPECIES	14	ENSGT00950000182988.a.b.b.b	ENSGT00940000160983	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000162034	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297.i	ENSGT01030000234566.e.b.b.b	ENSGT00940000163684	ENSGT00510000047611	ENSGT00940000163592	ENSGT00990000203619.B	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b	ENSGT00940000161206	ENSGT00950000182832.D.b
Indian cobra	MODERN SPECIES	13	PAK3 (ENSNNAG00000012562)	CHRDL1 (ENSNNAG00000012935)	AMMECR1 (ENSNNAG00000013007)	TMEM164 (ENSNNAG00000013022)	ACSL4 (ENSNNAG00000013046)	KCNE5 (ENSNNAG00000013094)	NXT2 (ENSNNAG00000013104)	IRS4 (ENSNNAG00000013126)	ENSNNAG00000013185	ENSNNAG00000013233	COL4A6 (ENSNNAG00000013259)	ATG4A (ENSNNAG00000013366)	PSMD10 (ENSNNAG00000013393)	GAB3 (ENSNNAG00000013426) #12	ENSNNAG00000013624 #21	VBP1 (ENSNNAG00000013671) #22	RAB39B (ENSNNAG00000013683) #23	ENSNNAG00000013700	SMARCA1 (ENSNNAG00000013933)	TENM1 (ENSNNAG00000017259)	ENSNNAG00000017447	ENSNNAG00000017454	ENSNNAG00000017641	ENSNNAG00000018225	LPAR4 (ENSNNAG00000018229)	ENSNNAG00000018232	ENSNNAG00000018236	ENSNNAG00000018238	ITM2A (ENSNNAG00000018239)	TBX22 (ENSNNAG00000018243)	CHMP1B (ENSNNAG00000018251)
Elapidae_a	ANCESTRAL SPECIES	30					ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000162034	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297.i	ENSGT01030000234566.e.b.b.b	ENSGT00940000163684	ENSGT00510000047611	ENSGT00940000163592	ENSGT00990000203619.B	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b	ENSGT00940000161206	ENSGT00950000182832.D.b
Acanthophiinae	ANCESTRAL SPECIES	20	ENSGT00940000166548.b	ENSGT01090000260082.d.a.a.b	ENSGT00390000001432	ENSGT00940000163549	ENSGT00940000158517.ab.a	ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297.i	ENSGT01030000234566.e.b.b.b	ENSGT00510000047611	ENSGT00940000163592	ENSGT00990000203619.B	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b	ENSGT00940000161206	ENSGT00950000182832.D.b	ENSGT00940000156837.w
Mainland tiger snake	MODERN SPECIES	64				ENSNSUG00000020589	ENSNSUG00000020590	HEPH (ENSNSUG00000020591)	ACSL4 (ENSNSUG00000020592)	KCNE5 (ENSNSUG00000020593)	IRS4 (ENSNSUG00000020594)	ENSNSUG00000020595	COL4A6 (ENSNSUG00000020596)	ATG4A (ENSNSUG00000020597)	PSMD10 (ENSNSUG00000020598)	GAB3 (ENSNSUG00000020600) #12	ENSNSUG00000020601 #21	VBP1 (ENSNSUG00000020602) #22	RAB39B (ENSNSUG00000020603) #23	ENSNSUG00000020604	SMARCA1 (ENSNSUG00000020605)	ENSNSUG00000020606	TENM1 (ENSNSUG00000020607)	ENSNSUG00000020608	ENSNSUG00000020609	ENSNSUG00000020610	ENSNSUG00000020611	LPAR4 (ENSNSUG00000020612)	ENSNSUG00000020613	ENSNSUG00000020614	ENSNSUG00000020615	ITM2A (ENSNSUG00000020616)	TBX22 (ENSNSUG00000020617)
Eastern brown snake	MODERN SPECIES	20	ENSPTXG00000000763	ENSPTXG00000000760	ENSPTXG00000000757	ENSPTXG00000000752	ENSPTXG00000000674	ENSPTXG00000000667	ACSL4 (ENSPTXG00000000267)	KCNE5 (ENSPTXG00000000173)	NXT2 (ENSPTXG00000000153)	IRS4 (ENSPTXG00000000093)	ENSPTXG00000008867	ATG4A (ENSPTXG00000008865)	PSMD10 (ENSPTXG00000008863)	GAB3 (ENSPTXG00000008861) #12	ENSPTXG00000008857 #21	VBP1 (ENSPTXG00000008855) #22	RAB39B (ENSPTXG00000008853) #23	ENSPTXG00000008852	ENSPTXG00000008851	ENSPTXG00000007759	TENM1 (ENSPTXG00000007753)	ENSPTXG00000007752	ENSPTXG00000007751	ENSPTXG00000004988	ENSPTXG00000004981	LPAR4 (ENSPTXG00000004980)	ENSPTXG00000004978	ENSPTXG00000004977	ITM2A (ENSPTXG00000004976)	CHMP1B (ENSPTXG00000004975)	ENSPTXG00000004973
Blue-lipped sea krait	MODERN SPECIES	5935														GAB3 (ENSLLTG00000009925) #12	ENSLLTG00000009941 #21	VBP1 (ENSLLTG00000009991) #22	RAB39B (ENSLLTG00000010021) #23	ENSLLTG00000010034
Lizard	MODERN SPECIES	816	ENSACAG00000038606	ACSL4 (ENSACAG00000012669)	KCNE5 (ENSACAG00000012668)	NXT2 (ENSACAG00000012649)	IRS4 (ENSACAG00000012623)	ENSACAG00000012321	ENSACAG00000043777	ENSACAG00000045021	ENSACAG00000044407	ATG4A (ENSACAG00000012035)	ENSACAG00000043756	VSIG1 (ENSACAG00000034933)	ENSACAG00000011922 #12	ENSACAG00000011799 #21	ENSACAG00000025948	ENSACAG00000011753 #22	ENSACAG00000035673 #23	ENSACAG00000011628	ENSACAG00000011376	ENSACAG00000038870	ENSACAG00000037291	ENSACAG00000036822	ENSACAG00000042963	ENSACAG00000027102	ENSACAG00000038073	ENSACAG00000029095	ENSACAG00000015165	ENSACAG00000043048	ENSACAG00000015305	ENSACAG00000015346	ENSACAG00000015354
Laterata	ANCESTRAL SPECIES	31	ENSGT00390000010397.a	ENSGT00390000007430	ENSGT00940000157427	ENSGT00940000155001.A	ENSGT00940000156381	ENSGT00940000160883	ENSGT00940000162034	ENSGT01100000265326	ENSGT00940000165066	ENSGT00940000153991.a.a	ENSGT00530000063000.a.b.a	ENSGT00940000153404.a	ENSGT00940000160507	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718	ENSGT00940000157297	ENSGT01030000234566.e.b.b.b	ENSGT00940000163684	ENSGT00510000047611	ENSGT00940000157424	ENSGT01100000263484.C.a.k	ENSGT00940000163592	ENSGT01100000263536.B.c.b	ENSGT01040000240444.A.a.a.a.b	ENSGT01100000263536.A.a.a.d	ENSGT01100000263536.A.a.a.c	ENSGT01100000263536.A.a.b	ENSGT00950000183115.b.b
Common wall lizard	MODERN SPECIES	419	CHRDL1 (ENSPMRG00000019660)	AMMECR1 (ENSPMRG00000019669)	TMEM164 (ENSPMRG00000019678)	ACSL4 (ENSPMRG00000019697)	KCNE5 (ENSPMRG00000019710)	NXT2 (ENSPMRG00000019716)	ENSPMRG00000019730	IRS4 (ENSPMRG00000019734)	ENSPMRG00000019738	COL4A6 (ENSPMRG00000019758)	ATG4A (ENSPMRG00000019783)	PSMD10 (ENSPMRG00000019794)	VSIG1 (ENSPMRG00000019803)	GAB3 (ENSPMRG00000019818) #12	ENSPMRG00000019848 #21	VBP1 (ENSPMRG00000019907) #22	RAB39B (ENSPMRG00000019916) #23	ENSPMRG00000019926	SMARCA1 (ENSPMRG00000019957)	ENSPMRG00000020044	TENM1 (ENSPMRG00000020071)	ENSPMRG00000020159	ENSPMRG00000020166	ENSPMRG00000020171	ENSPMRG00000020178	CYSLTR1 (ENSPMRG00000020201)	LPAR4 (ENSPMRG00000020204)	ENSPMRG00000019156	ENSPMRG00000019160	ENSPMRG00000019169	ITM2A (ENSPMRG00000019174)
Argentine black and white tegu	MODERN SPECIES	75																VBP1 (ENSSMRG00000016025) #22	RAB39B (ENSSMRG00000016024) #23	ENSSMRG00000016022	SMARCA1 (ENSSMRG00000012742)	ENSSMRG00000012728	TENM1 (ENSSMRG00000009253)	RAB41 (ENSSMRG00000009244)	ENSSMRG00000009243	ENSSMRG00000009235	ENSSMRG00000009234	ENSSMRG00000009232	LPAR4 (ENSSMRG00000009231)	ENSSMRG00000009229	ENSSMRG00000009228	ENSSMRG00000009227	ITM2A (ENSSMRG00000009226)
tuatara	MODERN SPECIES	803													SMARCA1 (ENSSPUG00000000590)	GAB3 (ENSSPUG00000000588) #12	ENSSPUG00000000565 #21	VBP1 (ENSSPUG00000000558) #22	RAB39B (ENSSPUG00000000552) #23	ENSSPUG00000000526	VSIG1 (ENSSPUG00000000508)	PSMD10 (ENSSPUG00000000503)	ATG4A (ENSSPUG00000000495)	COL4A6 (ENSSPUG00000000455)	ENSSPUG00000000395	IRS4 (ENSSPUG00000000389)	ENSSPUG00000000378	NXT2 (ENSSPUG00000000372)	KCNE5 (ENSSPUG00000000361)	ACSL4 (ENSSPUG00000000324)	TMEM164 (ENSSPUG00000000314)	AMMECR1 (ENSSPUG00000000206)	CHRDL1 (ENSSPUG00000000169)
Anura	ANCESTRAL SPECIES	246							ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00940000158743	ENSGT00950000182972.a.a.a.a.a	ENSGT00940000155920	ENSGT01030000234566.e.b.b.b	ENSGT00940000157297	ENSGT00940000159803 #12	ENSGT00950000183068.a.a #21	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165718
Leishan spiny toad	MODERN SPECIES	12	THOC2 (ENSLLEG00000021193)	XIAP (ENSLLEG00000021553)	ENSLLEG00000021703	STAG2 (ENSLLEG00000021746)	ENSLLEG00000022315	ENSLLEG00000022341	SH2D1A (ENSLLEG00000022367)	TENM1 (ENSLLEG00000022476)	ENSLLEG00000024020	ENSLLEG00000024041	ENSLLEG00000024151	ENSLLEG00000024195	SMARCA1 (ENSLLEG00000024263)	GAB3 (ENSLLEG00000025158) #12	ENSLLEG00000025343 #21	VBP1 (ENSLLEG00000026097) #22	ENSLLEG00000026177 #23	ENSLLEG00000026213 #23	ENSLLEG00000026240	ENSLLEG00000026320	ENSLLEG00000026397	ATG4A (ENSLLEG00000026514)	PSMD10 (ENSLLEG00000026674)	ENSLLEG00000019337	IRS4 (ENSLLEG00000019441)	GUCY2F (ENSLLEG00000019788)	OPHN1 (ENSLLEG00000020337)	AR (ENSLLEG00000020805)	ENSLLEG00000020894	ENSLLEG00000020929	ENSLLEG00000020955
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	750									TRPV4 (ENSLACG00000001362)	GLTP (ENSLACG00000003414)	ENSLACG00000004297	GIT2 (ENSLACG00000005014)	ANKRD13A (ENSLACG00000006592)	slc6a4b (ENSLACG00000007652)	ENSLACG00000010138	vbp1 (ENSLACG00000011072) #22	ENSLACG00000011827	CRYBB3 (ENSLACG00000012616)	CRYBB2 (ENSLACG00000012810)	GRK3 (ENSLACG00000014200)	ENSLACG00000014860
Coelacanth	MODERN SPECIES	451													SMARCA1 (ENSLACG00000016697)	GAB3 (ENSLACG00000016412) #12	ENSLACG00000016253 #21	vbp1 (ENSLACG00000016144) #22	ENSLACG00000016074 #23	ENSLACG00000016007	MTMR8 (ENSLACG00000015734)	AMER1 (ENSLACG00000015649)	ARHGEF9 (ENSLACG00000014369)	ENSLACG00000013005	cdx4 (ENSLACG00000012509)	CHIC1 (ENSLACG00000012289)	ENSLACG00000011944	lnx2b (ENSLACG00000011579)	rasl11a (ENSLACG00000011173)	ENSLACG00000010732	ENSLACG00000009966	zgc:109889 (ENSLACG00000009169)	SLC16A2 (ENSLACG00000007505)
Actinopterygii	ANCESTRAL SPECIES	5	ENSGT00390000008610.a.a	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00940000175310	ENSGT00530000064411	ENSGT00390000010063	ENSGT00530000063816.c	ENSGT00950000182988.a.b.a	ENSGT00940000156251	ENSGT00940000155350	ENSGT00940000156536.e.a	ENSGT00390000009497	ENSGT00940000156155	ENSGT00940000156648	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121	ENSGT00390000015655.a	ENSGT00940000159782	ENSGT00940000158415	ENSGT00940000158563	ENSGT00940000155627	ENSGT00940000157765	ENSGT00390000004663	ENSGT00440000039469	ENSGT00940000155677.b	ENSGT01030000234886	ENSGT00940000159575	ENSGT00940000154620	ENSGT00980000202145
Neopterygii	ANCESTRAL SPECIES	50	ENSGT00390000008610.a.a	ENSGT00940000160762	ENSGT00390000010128	ENSGT00390000011958	ENSGT00940000175310	ENSGT00530000064411	ENSGT00390000010063	ENSGT00530000063816.c.b	ENSGT00950000182988.a.b.a	ENSGT00940000156251	ENSGT00940000155350	ENSGT00940000156536.e.a	ENSGT00390000009497	ENSGT00940000156155	ENSGT00940000156648	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121	ENSGT00390000015655.a	ENSGT00940000159782	ENSGT00940000158415	ENSGT00940000158563	ENSGT00940000155627	ENSGT00940000157765	ENSGT00390000004663	ENSGT00440000039469	ENSGT00940000155677.b	ENSGT01030000234886	ENSGT00940000159575	ENSGT00940000154620	ENSGT00530000067879
Osteoglossocephalai	ANCESTRAL SPECIES	19	ENSGT01050000244955.a.b	ENSGT01050000244897.a.b.a	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a	ENSGT00940000157245	ENSGT00510000047493	ENSGT00940000164309	ENSGT00510000049291	ENSGT00950000183168.C	ENSGT00940000159334	ENSGT00940000153609.a	ENSGT00940000154651.a	ENSGT00940000154651.b	ENSGT00390000004952.a.b	ENSGT00390000000155.a.b	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121	ENSGT00950000183068.a.a.a.a #21	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b	ENSGT01050000244937.a.b.a.a	ENSGT01070000253816.a.a.a.c.a.a.a
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	33	ENSGT00950000182865.b.a.b.b.b.b	ENSGT00390000004360.a.b.a.a.a.b	ENSGT00940000178248	ENSGT01050000244955.a.b.n	ENSGT01050000244897.a.b.a.e	ENSGT00950000183071.a.b	ENSGT00950000182897.B.a.b.a.b	ENSGT00940000157245.o	ENSGT00510000047493	ENSGT00950000183168.C.e	ENSGT00940000159334.g	ENSGT00940000153609.a.l	ENSGT00940000154651.a.b	ENSGT00390000004952.a.b.l	ENSGT00390000000155.a.b.e	ENSGT00390000018904.c #22	ENSGT00940000158132 #23	ENSGT00940000165121	ENSGT00950000183068.a.a.a.a #21	ENSGT00940000159429	ENSGT00940000164406.l	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.d	ENSGT01050000244937.a.b.a.a	ENSGT01070000253816.a.a.a.c.a.a.a	ENSGT00950000183118.A.c.b.a	ENSGT00940000157843	ENSGT00530000063624.B.a	ENSGT00950000182963.b.b.e	ENSGT00940000153904.b.h	ENSGT00940000153284.a.mc.a.g.b
Asian bonytongue	MODERN SPECIES	4	gpc4 (ENSSFOG00015008896)	hs6st2 (ENSSFOG00015024939)	mbnl3 (ENSSFOG00015008968)	ENSSFOG00015009030	RAP2C (ENSSFOG00015024711)	zgc:92907 (ENSSFOG00015009045)	ENSSFOG00015029358	ENSSFOG00015028118	ENSSFOG00015009095	ENSSFOG00015028840	FOXO4 (ENSSFOG00015028789)	snx12 (ENSSFOG00015009126)	SLC7A3 (ENSSFOG00015009151)	ubl3b (ENSSFOG00015009186)	ENSSFOG00015009205	vbp1 (ENSSFOG00015033285) #22	ENSSFOG00015032571 #23	ENSSFOG00015009261	ENSSFOG00015009279 #21	zgc:92429 (ENSSFOG00015009352)	ENSSFOG00015009367	ENSSFOG00015009453	ENSSFOG00015009462	htr2cl1 (ENSSFOG00015009484)	tnfsf10l (ENSSFOG00015009504)	ENSSFOG00015009526	leap2 (ENSSFOG00015009548)	PHKA1 (ENSSFOG00015009639)	hdac8 (ENSSFOG00015009809)	cited1 (ENSSFOG00015009837)	ENSSFOG00015009888
P. kingsleyae	MODERN SPECIES	56	gpc3 (ENSPKIG00000021129)	gpc4 (ENSPKIG00000021111)	hs6st2 (ENSPKIG00000021099)	mbnl3 (ENSPKIG00000021063)	ENSPKIG00000021029	RAP2C (ENSPKIG00000021020)	zgc:92907 (ENSPKIG00000021007)	il2rgb (ENSPKIG00000020994)	ENSPKIG00000020977	ENSPKIG00000020933	FOXO4 (ENSPKIG00000020912)	snx12 (ENSPKIG00000020898)	slc7a3a (ENSPKIG00000020876)	ubl3b (ENSPKIG00000020851)	ENSPKIG00000020834	vbp1 (ENSPKIG00000020808) #22	rab39bb (ENSPKIG00000020795) #23	ENSPKIG00000020628 #21	zgc:92429 (ENSPKIG00000020424)	ENSPKIG00000020406	ENSPKIG00000020286	ENSPKIG00000020242	htr2cl1 (ENSPKIG00000020223)	ENSPKIG00000020194	ENSPKIG00000020179	ENSPKIG00000020173	leap2 (ENSPKIG00000020162)	PHKA1 (ENSPKIG00000020043)	hdac8 (ENSPKIG00000019978)	cited1 (ENSPKIG00000019960)	rps4x (ENSPKIG00000019937)
Osteoglossiformes	ANCESTRAL SPECIES	523												ENSGT00940000159334.h	ENSGT00940000153609.a.k.a	ENSGT00940000154651.a.a	ENSGT00390000000155.a.b.f	ENSGT00390000018904.d #22
Asian bonytongue	MODERN SPECIES	19												FOXO4 (ENSSFOG00015018280)	snx12 (ENSSFOG00015018284)	slc7a3a (ENSSFOG00015018307)	ENSSFOG00015030584	vbp1 (ENSSFOG00015018395) #22	ENSSFOG00015025586	rab39bb (ENSSFOG00015027600) #23	ENSSFOG00015018433	ENSSFOG00015018482 #21	ENSSFOG00015018586	ENSSFOG00015027326	ENSSFOG00015015228	ENSSFOG00015030596	ccnb3 (ENSSFOG00015018711)	tnfsf10l (ENSSFOG00015018728)	CLCN5 (ENSSFOG00015018767)	ENSSFOG00015018798	bmp15 (ENSSFOG00015029695)	PHKA1 (ENSSFOG00015018898)	cited1 (ENSSFOG00015019154)
Clupeocephala	ANCESTRAL SPECIES	383																ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.b #21	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT01070000253816.a.a.a.c.a.a.a
Otomorpha	ANCESTRAL SPECIES	43	ENSGT00940000157074	ENSGT00950000182985.b.b.sc	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00550000074832	ENSGT00940000159032	ENSGT00390000017284.a.b.c	ENSGT00510000047418	ENSGT00940000155980.A	ENSGT00390000005656	ENSGT00940000159592	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT01070000253816.a.a.a.c.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258
Otophysi	ANCESTRAL SPECIES	9	ENSGT00940000160783	ENSGT00940000157808.h	ENSGT00390000005763	ENSGT00940000160978	ENSGT00710000106790.w	ENSGT00950000183008.a.a.b	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT01050000245396	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132.o #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT01070000253816.a.a.a.c.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258
Characiphysae	ANCESTRAL SPECIES	45	ENSGT00940000160783	ENSGT00940000157808.h	ENSGT00390000005763	ENSGT00940000160978	ENSGT00710000106790.w	ENSGT00950000183008.a.a.b	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT01040000240385.A.b.b.b.a.a.b.b.b	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132.o #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a
Characiphysae_b	ANCESTRAL SPECIES	59	ENSGT00940000160783	ENSGT00940000157808.h	ENSGT00390000005763	ENSGT00940000160978	ENSGT00710000106790.w	ENSGT00950000183008.a.a.b	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT01040000240385.A.b.b.b.a.a.b.b.b	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132.o #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a
Characoidei	ANCESTRAL SPECIES	73	ENSGT00940000160783	ENSGT00940000157808.h	ENSGT00390000005763	ENSGT00940000160978	ENSGT00710000106790.w	ENSGT00950000183008.a.a.b	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT01040000240385.A.b.b.b.a.a.b.b.b.f.b	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132.o #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a
Red-bellied piranha	MODERN SPECIES	166									ENSPNAG00000013767	tap2a (ENSPNAG00000013748)	ENSPNAG00000002914	ENSPNAG00000002904	ENSPNAG00000013703	ENSPNAG00000002874	syt4 (ENSPNAG00000013633)	vbp1 (ENSPNAG00000002851) #22	rab39bb (ENSPNAG00000013589) #23	zgc:162171 (ENSPNAG00000013585)	ENSPNAG00000002817 #21	zgc:92429 (ENSPNAG00000002757)	ENSPNAG00000013398	ENSPNAG00000013222	zgc:109889 (ENSPNAG00000013214)	htr2cl1 (ENSPNAG00000013196)	CLCN5 (ENSPNAG00000002609)	pygmb (ENSPNAG00000013158)	sf1 (ENSPNAG00000013072)	rbm4.1 (ENSPNAG00000002539)	rbm4.2 (ENSPNAG00000013057)	rbm4.3 (ENSPNAG00000013053)	ENSPNAG00000013044
Mexicana tetra	MODERN SPECIES	7	efs (ENSAMXG00000003838)	dhrs4 (ENSAMXG00000003836)	tinf2 (ENSAMXG00000003829)	cideb (ENSAMXG00000003822)	homezb (ENSAMXG00000003816)	ENSAMXG00000003753	ENSAMXG00000003798	ENSAMXG00000043354	ENSAMXG00000005035	ENSAMXG00000032115	ENSAMXG00000037727	ENSAMXG00000039211	ENSAMXG00000003739	ENSAMXG00000003730	syt4 (ENSAMXG00000003725)	vbp1 (ENSAMXG00000030215) #22	rab39bb (ENSAMXG00000003717) #23	zgc:162171 (ENSAMXG00000029318)	ENSAMXG00000003705 #21	zgc:92429 (ENSAMXG00000029297)	ENSAMXG00000003696	ENSAMXG00000025792	zgc:109889 (ENSAMXG00000003687)	htr2cl1 (ENSAMXG00000032285)	ccnb3 (ENSAMXG00000003676)	ENSAMXG00000042861	tnfsf10l (ENSAMXG00000003673)	CLCN5 (ENSAMXG00000003672)	pygmb (ENSAMXG00000003645)	sf1 (ENSAMXG00000003630)	rbm4.1 (ENSAMXG00000036611)
Electric eel	MODERN SPECIES	170	mrpl52 (ENSEEEG00000005930)	AJUBA (ENSEEEG00000005914)	acin1b (ENSEEEG00000005872)	efs (ENSEEEG00000005871)	dhrs4 (ENSEEEG00000005869)	tinf2 (ENSEEEG00000005867)	cideb (ENSEEEG00000005866)	homezb (ENSEEEG00000005864)	ENSEEEG00000005809	ENSEEEG00000005726	ENSEEEG00000005620	ENSEEEG00000005435	ENSEEEG00000005423	ENSEEEG00000005407	syt4 (ENSEEEG00000005405)	vbp1 (ENSEEEG00000005402) #22	rab39bb (ENSEEEG00000005400) #23	zgc:162171 (ENSEEEG00000005399)	ENSEEEG00000005373 #21	zgc:92429 (ENSEEEG00000005366)	ENSEEEG00000005360	ENSEEEG00000005354	ENSEEEG00000005260	rab13 (ENSEEEG00000005258)	ENSEEEG00000005257	nbn (ENSEEEG00000005255)	OSGIN2 (ENSEEEG00000005249)	ENSEEEG00000005243	gtpbp10 (ENSEEEG00000005241)	ENSEEEG00000005228
Channel catfish	MODERN SPECIES	26	ENSIPUG00000020191	ccdc149a (ENSIPUG00000020203)	dhx15 (ENSIPUG00000020233)	PPARGC1A (ENSIPUG00000020313)	gba3 (ENSIPUG00000020346)	adgra3 (ENSIPUG00000020357)	kcnip4 (ENSIPUG00000020401)	sec24d (ENSIPUG00000020455)	SYNPO2 (ENSIPUG00000020468)	myoz2a (ENSIPUG00000020473)	ENSIPUG00000020482	ENSIPUG00000020510	ENSIPUG00000020520	ENSIPUG00000020532	ENSIPUG00000020539	vbp1 (ENSIPUG00000020555) #22	ENSIPUG00000020571	ENSIPUG00000020603	rab39b (ENSIPUG00000020833) #23	zgc:162171 (ENSIPUG00000020836)	ENSIPUG00000022708 #21	CHORDC1 (ENSIPUG00000022738)	ENSIPUG00000022755	zgc:109889 (ENSIPUG00000022826)	htr2cl1 (ENSIPUG00000022838)	ccnb3 (ENSIPUG00000022845)	ENSIPUG00000022858	TNFSF10 (ENSIPUG00000022860)	CLCN5 (ENSIPUG00000022868)	pygmb (ENSIPUG00000022891)	sf1 (ENSIPUG00000022924)
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00940000157808.h	ENSGT00390000005763	ENSGT00940000160978	ENSGT00710000106790.w	ENSGT00950000183008.a.a.b	ENSGT00940000164342	ENSGT00400000022326.a	ENSGT01050000245396	ENSGT00390000018596.A.a.b	ENSGT00950000182893.a.b.e.a	ENSGT00980000198821.a	ENSGT00960000187089	ENSGT00390000007726.b	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132.o #23	ENSGT00940000165121.b.a	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b	ENSGT00940000153763.a	ENSGT00950000183148.b.a.g.a	ENSGT00940000157258	ENSGT00940000164485.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	1	ENSGT00940000159574.r	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.a.a.a.b.b	ENSGT00940000163573	ENSGT00940000160783.b	ENSGT00940000157808.h.b	ENSGT00390000005763	ENSGT00940000160978.a.a	ENSGT00940000160978.a.b	ENSGT00710000106790.w.c.b	ENSGT00950000183008.a.a.b.c.b	ENSGT00940000164342.h	ENSGT01050000245396	ENSGT00390000018596.A.a.b.a	ENSGT00950000182893.a.b.e.a.b	ENSGT00940000159026.e	ENSGT00390000018904.e #22	ENSGT00940000158132.o.b #23	ENSGT00940000165121.b.a.b	ENSGT00950000183068.a.a.a.b.a #21	ENSGT00940000159429.g	ENSGT00940000164406.m	ENSGT01060000248564.b.a.b.b.b.a.b	ENSGT00950000182962.a.b.a.b.a	ENSGT00950000182962.a.b.a.b.b	ENSGT01050000244937.a.b.a.a.b	ENSGT00940000160459.v	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b.a.b	ENSGT00940000153763.a.j.b	ENSGT00950000183148.b.a.g.a.d.b	ENSGT00940000157258.a
Goldfish	MODERN SPECIES	25	SVEP1 (ENSCARG00000059090)	slc7a8a (ENSCARG00000060217)	ENSCARG00000060362	gmpr2 (ENSCARG00000060420)	ENSCARG00000060507	mmp14a (ENSCARG00000060552)	ENSCARG00000060726	AJUBA (ENSCARG00000060749)	acin1b (ENSCARG00000060813)	efs (ENSCARG00000061070)	dhrs4 (ENSCARG00000061126)	ENSCARG00000061459	cideb (ENSCARG00000061480)	homezb (ENSCARG00000061525)	syt4 (ENSCARG00000061562)	vbp1 (ENSCARG00000061574) #22	rab39bb (ENSCARG00000061586) #23	zgc:162171 (ENSCARG00000061597)	ENSCARG00000061625 #21	zgc:92429 (ENSCARG00000062292)	ENSCARG00000062343	ENSCARG00000062460	zgc:109889 (ENSCARG00000062477)	htr2cl1 (ENSCARG00000062510)	ccnb3 (ENSCARG00000062532)	tnfsf10l (ENSCARG00000062577)	CLCN5 (ENSCARG00000062657)	sf1 (ENSCARG00000062797)	rbm4.1 (ENSCARG00000063160)	rbm4.2 (ENSCARG00000063171)	ENSCARG00000063187
Cyprininae_a	ANCESTRAL SPECIES	56													ENSGT00390000018596.A.a.b.a	ENSGT00950000182893.a.b.e.a.b	ENSGT00940000159026.e	ENSGT00390000018904.e #22	ENSGT00940000158132.o.b #23	ENSGT00940000165121.b.a.b	ENSGT00950000183068.a.a.a.b.a #21	ENSGT00940000159429.g	ENSGT00940000164406.m	ENSGT01060000248564.b.a.b.b.b.a.b	ENSGT00950000182962.a.b.a.b.a	ENSGT00950000182962.a.b.a.b.b	ENSGT01050000244937.a.b.a.a.b	ENSGT00940000160459.v	ENSGT00650000094770	ENSGT01070000253816.a.a.a.c.a.b.a.b	ENSGT00940000153763.a.j.b	ENSGT00950000183148.b.a.g.a.d.b	ENSGT00940000157258.a
Common carp reference	MODERN SPECIES	6	ENSCCRG00000028002	slc7a8a (ENSCCRG00000075789)	nedd8 (ENSCCRG00000081951)	si:ch211-216p19.6 (ENSCCRG00000071241)	ENSCCRG00000071206	mmp14a (ENSCCRG00000075429)	mrpl52 (ENSCCRG00000060943)	ENSCCRG00000021852	acin1b (ENSCCRG00000021894)	efs (ENSCCRG00000051671)	dhrs4 (ENSCCRG00000019742)	ENSCCRG00000062745	cideb (ENSCCRG00000081549)	homezb (ENSCCRG00000051676)	syt4 (ENSCCRG00000061427)	vbp1 (ENSCCRG00000072042) #22	rab39bb (ENSCCRG00000081673) #23	zgc:162171 (ENSCCRG00000067611)	ENSCCRG00000039685 #21	zgc:92429 (ENSCCRG00000034156)	ENSCCRG00000032889	ENSCCRG00000071136	zgc:109889 (ENSCCRG00000082642)	htr2cl1 (ENSCCRG00000019463)	ccnb3 (ENSCCRG00000050249)	ENSCCRG00000081235	tnfsf10l (ENSCCRG00000065929)	ENSCCRG00000048944	ENSCCRG00000061738	pygmb (ENSCCRG00000070271)	sf1 (ENSCCRG00000075049)
Golden-line barbel	MODERN SPECIES	98	gmpr2 (ENSSGRG00000047188)	si:ch211-216p19.6 (ENSSGRG00000047183)	ENSSGRG00000047182	mmp14a (ENSSGRG00000047179)	AJUBA (ENSSGRG00000047177)	acin1b (ENSSGRG00000047170)	dhrs4 (ENSSGRG00000047166)	dhrs4 (ENSSGRG00000047161)	tinf2 (ENSSGRG00000047157)	cideb (ENSSGRG00000047155)	homezb (ENSSGRG00000047153)	ENSSGRG00000047150	ENSSGRG00000047126	ENSSGRG00000047124	syt4 (ENSSGRG00000047123)	vbp1 (ENSSGRG00000047121) #22	rab39bb (ENSSGRG00000047118) #23	zgc:162171 (ENSSGRG00000047116)	ENSSGRG00000047063 #21	zgc:92429 (ENSSGRG00000047062)	ENSSGRG00000046408	ENSSGRG00000046370	ENSSGRG00000046369	zgc:109889 (ENSSGRG00000046368)	htr2cl1 (ENSSGRG00000046367)	ccnb3 (ENSSGRG00000046336)	ENSSGRG00000046334	CLCN5 (ENSSGRG00000046332)	pygmb (ENSSGRG00000044162)	sf1 (ENSSGRG00000044011)	rbm4.1 (ENSSGRG00000044010)
Cyprininae	ANCESTRAL SPECIES	199				ENSGT00940000160978.b	ENSGT00710000106790.w.c.a	ENSGT00950000183008.a.a.b.c.a	ENSGT00940000164342.g	ENSGT00400000022326.a	ENSGT00390000018596.A.a.b.b	ENSGT00950000182893.a.b.e.a.a	ENSGT00980000198821.a	ENSGT00960000187089	ENSGT00390000007726.b.c	ENSGT00390000018729.b	ENSGT00940000159026.f	ENSGT00390000018904.f #22	ENSGT00940000158132.o.a #23	ENSGT00940000165121.b.a.a	ENSGT00950000183068.a.a.a.b.b #21	ENSGT00940000159429.h	ENSGT00940000164406.n	ENSGT01060000248564.b.a.b.b.b.a.a	ENSGT00950000182962.a.b.a.a	ENSGT01050000244937.a.b.a.a.a	ENSGT00940000160459.u	ENSGT01070000253816.a.a.a.c.a.b.a.a	ENSGT00940000153763.a.j.a	ENSGT00950000183148.b.a.g.a.d.a	ENSGT00940000157258.b	ENSGT00940000164485.a.a.g	ENSGT00940000164485.a.b.a.a
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00710000106790.w.c.a	ENSGT00950000183008.a.a.b.c.a	ENSGT00940000164342.g	ENSGT00400000022326.a	ENSGT00710000106790.w.c.b	ENSGT00950000183008.a.a.b.c.b	ENSGT00940000164342.h	ENSGT01050000245396	ENSGT00390000018596.A.a.b.b	ENSGT00950000182893.a.b.e.a.a	ENSGT00980000198821.a	ENSGT00960000187089	ENSGT00390000007726.b.c	ENSGT00390000018729.b	ENSGT00940000159026.f	ENSGT00390000018904.f #22	ENSGT00940000158132.o.a #23	ENSGT00940000165121.b.a.a	ENSGT00950000183068.a.a.a.b.b #21	ENSGT00940000159429.h.a	ENSGT00940000164406.n	ENSGT01060000248564.b.a.b.b.b.a.a	ENSGT00950000182962.a.b.a.a	ENSGT01050000244937.a.b.a.a.a	ENSGT00940000160459.u	ENSGT01070000253816.a.a.a.c.a.b.a.a	ENSGT00940000153763.a.j.a	ENSGT00950000183148.b.a.g.a.d.a	ENSGT00940000157258.b	ENSGT00940000164485.a.a.g	ENSGT00940000164485.a.b.a.a
Golden-line barbel	MODERN SPECIES	23	ENSSGRG00000047076	mmp14a (ENSSGRG00000047077)	mrpl52 (ENSSGRG00000047098)	AJUBA (ENSSGRG00000047100)	acin1b (ENSSGRG00000047102)	efs (ENSSGRG00000047109)	dhrs4 (ENSSGRG00000047111)	tinf2 (ENSSGRG00000047132)	ENSSGRG00000047133	cideb (ENSSGRG00000047134)	homezb (ENSSGRG00000047135)	ENSSGRG00000047137	ENSSGRG00000047138	ENSSGRG00000047141	syt4 (ENSSGRG00000047144)	vbp1 (ENSSGRG00000047145) #22	rab39bb (ENSSGRG00000047147) #23	ENSSGRG00000047148	ENSSGRG00000047159 #21	zgc:92429 (ENSSGRG00000047363)	ENSSGRG00000047390	ENSSGRG00000047692	zgc:109889 (ENSSGRG00000047694)	htr2cl1 (ENSSGRG00000047698)	ccnb3 (ENSSGRG00000047703)	tnfsf10l (ENSSGRG00000047707)	CLCN5 (ENSSGRG00000047716)	pygmb (ENSSGRG00000049140)	sf1 (ENSSGRG00000049382)	rbm4.1 (ENSSGRG00000049421)	rbm4.2 (ENSSGRG00000049423)
Common carp reference	MODERN SPECIES		mmp14a (ENSCCRG00000074414)	mrpl52 (ENSCCRG00000021859)	ENSCCRG00000054591	acin1b (ENSCCRG00000021844)	efs (ENSCCRG00000007565)	dhrs4 (ENSCCRG00000076827)	tinf2 (ENSCCRG00000019741)	cideb (ENSCCRG00000019739)	homezb (ENSCCRG00000080078)	ENSCCRG00000064037	ENSCCRG00000019670	ENSCCRG00000019653	ENSCCRG00000019648	ENSCCRG00000019640	syt4 (ENSCCRG00000019636)	vbp1 (ENSCCRG00000066132) #22	rab39bb (ENSCCRG00000019621) #23	zgc:162171 (ENSCCRG00000059463)	ENSCCRG00000034246 #21	zgc:92429 (ENSCCRG00000065932)	ENSCCRG00000038885	ENSCCRG00000053366	zgc:109889 (ENSCCRG00000019465)	htr2cl1 (ENSCCRG00000019458)	ccnb3 (ENSCCRG00000019455)	tnfsf10l (ENSCCRG00000019443)	ENSCCRG00000009877	pygmb (ENSCCRG00000024457)	sf1 (ENSCCRG00000053685)	rbm4.1 (ENSCCRG00000031666)	ENSCCRG00000064592
Goldfish	MODERN SPECIES	47	mmp14a (ENSCARG00000015860)	mrpl52 (ENSCARG00000015902)	AJUBA (ENSCARG00000015915)	acin1b (ENSCARG00000015950)	efs (ENSCARG00000016000)	dhrs4 (ENSCARG00000016035)	tinf2 (ENSCARG00000016079)	cideb (ENSCARG00000016100)	homezb (ENSCARG00000016125)	ENSCARG00000016128	ENSCARG00000016135	ENSCARG00000016143	ENSCARG00000016171	ENSCARG00000016181	syt4 (ENSCARG00000016232)	vbp1 (ENSCARG00000016248) #22	rab39bb (ENSCARG00000016259) #23	zgc:162171 (ENSCARG00000016265)	ENSCARG00000016286 #21	zgc:92429 (ENSCARG00000016402)	ENSCARG00000016711	ENSCARG00000016729	zgc:109889 (ENSCARG00000007166)	htr2cl1 (ENSCARG00000007181)	ccnb3 (ENSCARG00000007196)	tnfsf10l (ENSCARG00000007255)	CLCN5 (ENSCARG00000007414)	pygmb (ENSCARG00000009719)	sf1 (ENSCARG00000011268)	rbm4.1 (ENSCARG00000011430)	rbm4.2 (ENSCARG00000011438)
Zebrafish	MODERN SPECIES	22	ENSDARG00000054539	mmp14a (ENSDARG00000002235)	mrpl52 (ENSDARG00000090568)	AJUBA (ENSDARG00000077842)	acin1b (ENSDARG00000026842)	efs (ENSDARG00000088835)	dhrs4 (ENSDARG00000021135)	tinf2 (ENSDARG00000054473)	cideb (ENSDARG00000012640)	homezb (ENSDARG00000024598)	ENSDARG00000105607	ENSDARG00000101235	ENSDARG00000076443	ENSDARG00000102029	syt4 (ENSDARG00000036505)	vbp1 (ENSDARG00000030241) #22	rab39bb (ENSDARG00000036501) #23	zgc:162171 (ENSDARG00000036499)	ENSDARG00000029170 #21	zgc:92429 (ENSDARG00000030176)	ENSDARG00000074183	ENSDARG00000036560	zgc:109889 (ENSDARG00000069600)	htr2cl1 (ENSDARG00000018228)	ccnb3 (ENSDARG00000034855)	ENSDARG00000102228	tnfsf10l (ENSDARG00000004196)	CLCN5 (ENSDARG00000022466)	pygmb (ENSDARG00000013317)	sf1 (ENSDARG00000008188)	rbm4.1 (ENSDARG00000036386)
Clupeiformes	ANCESTRAL SPECIES	45	ENSGT00940000165651.b	ENSGT00940000166331	ENSGT00950000182985.b.b.rc.a	ENSGT00940000160539	ENSGT00940000164137.a	ENSGT00550000074832	ENSGT00940000159032.e	ENSGT00390000017284.a.b.c	ENSGT00510000047418	ENSGT00940000155980.A	ENSGT00390000005656	ENSGT00940000159592	ENSGT00960000187089	ENSGT00390000018729.b	ENSGT00940000159026	ENSGT00390000018904 #22	ENSGT00940000158132 #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000154651.a	ENSGT00940000165121.a	ENSGT00950000183068.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.c.a.b	ENSGT01070000253816.a.a.a.c.a.a.b	ENSGT00940000153763.a
Atlantic herring	MODERN SPECIES	9	FABP2 (ENSCHAG00000024387)	ENSCHAG00000024385	DMRTA1 (ENSCHAG00000024382)	ENSCHAG00000024369	ELAVL2 (ENSCHAG00000024234)	CAAP1 (ENSCHAG00000024225)	PTPRD (ENSCHAG00000022128)	ENSCHAG00000022072	TYRP1 (ENSCHAG00000022041)	LURAP1L (ENSCHAG00000022033)	MPDZ (ENSCHAG00000018153)	ADGRL3 (ENSCHAG00000016770)	ENSCHAG00000012496	ENSCHAG00000012178	syt4 (ENSCHAG00000012167)	vbp1 (ENSCHAG00000012118) #22	rab39bb (ENSCHAG00000012110) #23	zgc:162171 (ENSCHAG00000012096)	ENSCHAG00000011346 #21	zgc:92429 (ENSCHAG00000011286)	ENSCHAG00000010906	ENSCHAG00000010868	zgc:109889 (ENSCHAG00000010846)	htr2cl1 (ENSCHAG00000010715)	ENSCHAG00000010692	tnfsf10l (ENSCHAG00000010677)	CLCN5 (ENSCHAG00000007231)	pygmb (ENSCHAG00000006022)	sf1 (ENSCHAG00000005483)	rbm4.1 (ENSCHAG00000005467)	rbm4.2 (ENSCHAG00000005460)
Denticle herring	MODERN SPECIES		gmpr2 (ENSDCDG00000002577)	ENSDCDG00000002572	slc7a8a (ENSDCDG00000002524)	ENSDCDG00000002513	ENSDCDG00000002511	nat16l (ENSDCDG00000002509)	nagk (ENSDCDG00000002496)	dok1b (ENSDCDG00000002489)	m1ap (ENSDCDG00000002485)	SEMA4F (ENSDCDG00000002482)	ENSDCDG00000002480	ENSDCDG00000002478	ENSDCDG00000002475	ENSDCDG00000002472	syt4 (ENSDCDG00000002469)	vbp1 (ENSDCDG00000002467) #22	rab39ba (ENSDCDG00000002465) #23	zgc:162171 (ENSDCDG00000002463)	ENSDCDG00000002460	ENSDCDG00000002220 #21	zgc:92429 (ENSDCDG00000002179)	ENSDCDG00000001908	ENSDCDG00000001888	zgc:109889 (ENSDCDG00000001886)	htr2cl1 (ENSDCDG00000001885)	ENSDCDG00000001884	ccnb3 (ENSDCDG00000001880)	ccnb3 (ENSDCDG00000001874)	tnfsf10l (ENSDCDG00000001869)	CLCN5 (ENSDCDG00000001179)	pygmb (ENSDCDG00000000966)
Euteleosteomorpha	ANCESTRAL SPECIES	165																ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.c.b	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940
Protacanthopterygii	ANCESTRAL SPECIES	61	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000157094	ENSGT00940000164076.a.a.e	ENSGT00940000164076.a.a.f	ENSGT00940000162034	ENSGT00940000160883.b	ENSGT00940000165991	ENSGT00940000164592	ENSGT00940000153284.a.mc.a	ENSGT00940000153904.b	ENSGT00950000182963.b.b	ENSGT00390000005569	ENSGT00530000063624.B	ENSGT00940000157843	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b.c #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	58	ENSGT00940000153299.a.a.d	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000162034	ENSGT00940000160883.b.e	ENSGT00940000164592.f	ENSGT00940000153284.a.mc.a.f	ENSGT00940000153904.b.e	ENSGT00950000182963.b.b.w.a	ENSGT00390000005569.k	ENSGT00530000063624.B.j	ENSGT00940000157843.q	ENSGT00390000018904.g #22	ENSGT00940000158132.m.a.c #23	ENSGT00940000165121.b.d	ENSGT00950000183068.a.a.a.b.c.a #21	ENSGT00940000159429	ENSGT00940000164406.o.a	ENSGT01060000248564.b.a.b.b.b.a.c	ENSGT00950000182962.a.b.a.c.a	ENSGT01050000244937.a.b.a.a.c.b	ENSGT01070000253816.a.a.a.d.b
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000157678.ob	ENSGT00940000160883.b.e	ENSGT00940000164592.f	ENSGT00940000153284.a.mc.a.f	ENSGT00940000153904.b.e	ENSGT00950000182963.b.b.w.a	ENSGT00390000005569.k	ENSGT00530000063624.B.j	ENSGT00940000157843.q	ENSGT00390000018904.g #22	ENSGT00940000158132.m.a.c #23	ENSGT00940000165121.b.d	ENSGT00950000183068.a.a.a.b.c.a #21	ENSGT00940000159429	ENSGT00940000164406.o.a	ENSGT01060000248564.b.a.b.b.b.a.c	ENSGT00950000182962.a.b.a.c.a	ENSGT01050000244937.a.b.a.a.c.b	ENSGT01070000253816.a.a.a.d.b	ENSGT00940000159479.q.a	ENSGT00510000050937.e.a	ENSGT00940000159026.j	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT00390000017284.a.b.c.c
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000157678.ob	ENSGT00940000160883.b.e	ENSGT00940000164592.f	ENSGT00940000153284.a.mc.a.f	ENSGT00940000153904.b.e	ENSGT00950000182963.b.b.w.a	ENSGT00390000005569.k	ENSGT00530000063624.B.j	ENSGT00940000157843.q	ENSGT00390000018904.g #22	ENSGT00940000158132.m.a.c #23	ENSGT00940000165121.b.d	ENSGT00950000183068.a.a.a.b.c.a #21	ENSGT00940000159429	ENSGT00940000164406.o.a	ENSGT01060000248564.b.a.b.b.b.a.c	ENSGT00950000182962.a.b.a.c.a	ENSGT01050000244937.a.b.a.a.c.b	ENSGT01070000253816.a.a.a.d.b	ENSGT00940000159479.q.a	ENSGT00940000159026.j	ENSGT00390000007726.b	ENSGT00940000154427.B	ENSGT00390000017284.a.b.c.c	ENSGT00940000160539.j.a
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000164076.a.a.e	ENSGT00940000157678.ob	ENSGT00940000160883.b.e	ENSGT00940000164592.f	ENSGT00940000153284.a.mc.a.f	ENSGT00940000153904.b.e	ENSGT00950000182963.b.b.w.a	ENSGT00390000005569.k	ENSGT00530000063624.B.j	ENSGT00940000157843.q	ENSGT00390000018904.g #22	ENSGT00940000158132.m.a.c #23	ENSGT00940000165121.b.d	ENSGT00950000183068.a.a.a.b.c.a #21	ENSGT00940000159429	ENSGT00940000164406.o.a	ENSGT01060000248564.b.a.b.b.b.a.c	ENSGT00950000182962.a.b.a.c.a	ENSGT01050000244937.a.b.a.a.c.b	ENSGT01070000253816.a.a.a.d.b	ENSGT00940000159479.q.a	ENSGT00940000159026.j	ENSGT00390000007726.b	ENSGT00940000154427.B	ENSGT00390000017284.a.b.c.c	ENSGT00940000160539.j.a
Coho salmon	MODERN SPECIES	29	CD99L2 (ENSOKIG00005002764)	mtmr1a (ENSOKIG00005002077)	ENSOKIG00005046093	ENSOKIG00005046085	ankrd46b (ENSOKIG00005046054)	ENSOKIG00005046012	col4a5 (ENSOKIG00005045991)	ENSOKIG00005045987	rasl11a (ENSOKIG00005045973)	ENSOKIG00005045930	arhgap36 (ENSOKIG00005045903)	ENSOKIG00005045886	rps4x (ENSOKIG00005045846)	cited1 (ENSOKIG00005045836)	hdac8 (ENSOKIG00005045782)	vbp1 (ENSOKIG00005045741) #22	RAB39B (ENSOKIG00005045714) #23	zgc:162171 (ENSOKIG00005045706)	ENSOKIG00005045575 #21	zgc:92429 (ENSOKIG00005045537)	ENSOKIG00005045423	ENSOKIG00005045390	zgc:109889 (ENSOKIG00005045373)	htr2cl1 (ENSOKIG00005045370)	ENSOKIG00005045350	ENSOKIG00005045342	syt4 (ENSOKIG00005045335)	ENSOKIG00005045315	ENSOKIG00005045310	ENSOKIG00005045307	PAIP2B (ENSOKIG00005045304)
Chinook salmon	MODERN SPECIES	6	cd99l2 (ENSOTSG00005036950)	mtmr1a (ENSOTSG00005033863)	ENSOTSG00005018336	ENSOTSG00005018334	ankrd46b (ENSOTSG00005018328)	ENSOTSG00005018323	col4a5 (ENSOTSG00005018308)	ENSOTSG00005018303	rasl11a (ENSOTSG00005018300)	ENSOTSG00005018205	arhgap36 (ENSOTSG00005018199)	ENSOTSG00005018198	rps4x (ENSOTSG00005018194)	cited1 (ENSOTSG00005018193)	hdac8 (ENSOTSG00005018034)	vbp1 (ENSOTSG00005018033) #22	RAB39B (ENSOTSG00005018032) #23	zgc:162171 (ENSOTSG00005018031)	ENSOTSG00005017761 #21	zgc:92429 (ENSOTSG00005017758)	ENSOTSG00005017728	ENSOTSG00005017725	zgc:109889 (ENSOTSG00005017724)	htr2cl1 (ENSOTSG00005017722)	ENSOTSG00005017721	ENSOTSG00005017720	syt4 (ENSOTSG00005017719)	ENSOTSG00005017662	ENSOTSG00005017660	PAIP2B (ENSOTSG00005017659)	ENSOTSG00005017658
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000074902	ENSOMYG00000041261	ENSOMYG00000041266	ankrd46b (ENSOMYG00000041219)	ENSOMYG00000053629	ENSOMYG00000041209	col4a5 (ENSOMYG00000041201)	ENSOMYG00000061984	rasl11a (ENSOMYG00000036169)	ENSOMYG00000036194	ENSOMYG00000056479	arhgap36 (ENSOMYG00000036256)	ENSOMYG00000036312	rs4x (ENSOMYG00000036395)	hdac8 (ENSOMYG00000036512)	vbp1 (ENSOMYG00000036453) #22	ENSOMYG00000060573	ENSOMYG00000065332 #23	zgc:162171 (ENSOMYG00000036572)	ENSOMYG00000055330	ENSOMYG00000036613 #21	zgc:92429 (ENSOMYG00000036719)	ENSOMYG00000077436	ENSOMYG00000036740	ENSOMYG00000041194	zgc:109889 (ENSOMYG00000041191)	ENSOMYG00000039111	ENSOMYG00000057081	ENSOMYG00000052889	htr2cl1 (ENSOMYG00000027324)	ENSOMYG00000041176
Salmo	ANCESTRAL SPECIES	25	ENSGT00940000154344.a.f	ENSGT00940000153669.b.r	ENSGT00940000157029.n	ENSGT00730000111366.o	ENSGT00990000210653	ENSGT00940000157094.b	ENSGT00940000157678.ob	ENSGT00940000160883.b.e	ENSGT00940000164592.f	ENSGT00940000153284.a.mc.a.f	ENSGT00940000153904.b.e	ENSGT00950000182963.b.b.w.a	ENSGT00390000005569.k	ENSGT00530000063624.B.j	ENSGT00940000157843.q	ENSGT00390000018904.g #22	ENSGT00940000158132.m.a.c #23	ENSGT00940000165121.b.d	ENSGT00950000183068.a.a.a.b.c.a #21	ENSGT00940000159429	ENSGT00940000164406.o.a	ENSGT01060000248564.b.a.b.b.b.a.c	ENSGT00950000182962.a.b.a.c.a	ENSGT01050000244937.a.b.a.a.c.b	ENSGT01070000253816.a.a.a.d.b	ENSGT00940000159479.q.a	ENSGT00510000050937.e.a	ENSGT00940000159026.j	ENSGT00390000007726.b	ENSGT00960000187089	ENSGT00940000160539.j.a
River trout	MODERN SPECIES	38	CD99L2 (ENSSTUG00000029828)	mtmr1a (ENSSTUG00000029887)	ENSSTUG00000031234	ENSSTUG00000031242	ankrd46b (ENSSTUG00000031250)	ENSSTUG00000031343	col4a5 (ENSSTUG00000031494)	ENSSTUG00000031580	rasl11a (ENSSTUG00000031594)	ENSSTUG00000031627	arhgap36 (ENSSTUG00000031900)	ENSSTUG00000032017	rps4x (ENSSTUG00000032067)	cited1 (ENSSTUG00000032220)	hdac8 (ENSSTUG00000032236)	vbp1 (ENSSTUG00000032394) #22	RAB39B (ENSSTUG00000032411) #23	zgc:162171 (ENSSTUG00000032424)	ENSSTUG00000032574 #21	zgc:92429 (ENSSTUG00000034949)	ENSSTUG00000035023	ENSSTUG00000035302	zgc:109889 (ENSSTUG00000035310)	htr2cl1 (ENSSTUG00000035330)	ENSSTUG00000035346	ENSSTUG00000035351	ENSSTUG00000035374	ENSSTUG00000035427	ENSSTUG00000035453	leap2 (ENSSTUG00000035457)	syt4 (ENSSTUG00000035462)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000064879	ENSSSAG00000064874	ankrd46b (ENSSSAG00000064738)	ENSSSAG00000090893	ENSSSAG00000109471	col4a5 (ENSSSAG00000064682)	ENSSSAG00000118234	ENSSSAG00000083803	rasl11a (ENSSSAG00000096072)	ENSSSAG00000067582	arhgap36 (ENSSSAG00000067565)	ENSSSAG00000067551	rps4x (ENSSSAG00000067529)	cited1 (ENSSSAG00000106816)	hdac8 (ENSSSAG00000067514)	vbp1 (ENSSSAG00000084461) #22	ENSSSAG00000085591 #23	zgc:162171 (ENSSSAG00000067505)	ENSSSAG00000064118 #21	zgc:92429 (ENSSSAG00000064040)	ENSSSAG00000057091	zgc:109889 (ENSSSAG00000060645)	ENSSSAG00000084228	ENSSSAG00000056916	ENSSSAG00000056858	ENSSSAG00000056850	ENSSSAG00000119588	syt4 (ENSSSAG00000056840)	ENSSSAG00000003319	ccdc166 (ENSSSAG00000094260)	ENSSSAG00000083265
Huchen	MODERN SPECIES	171	ENSHHUG00000024963	ENSHHUG00000024940	ENSHHUG00000024931	ENSHHUG00000024927	ENSHHUG00000024906	ENSHHUG00000024898	ENSHHUG00000024895	ENSHHUG00000024891	rasl11a (ENSHHUG00000024876)	ENSHHUG00000024834	arhgap36 (ENSHHUG00000024807)	ENSHHUG00000024800	rps4x (ENSHHUG00000024657)	cited1 (ENSHHUG00000024651)	hdac8 (ENSHHUG00000024639)	vbp1 (ENSHHUG00000024626) #22	RAB39B (ENSHHUG00000024619) #23	zgc:162171 (ENSHHUG00000024614)	ENSHHUG00000024421 #21	zgc:92429 (ENSHHUG00000024418)	ENSHHUG00000024008	ENSHHUG00000023991	ENSHHUG00000023989	ENSHHUG00000023986	zgc:109889 (ENSHHUG00000023982)	htr2cl1 (ENSHHUG00000023975)	ENSHHUG00000023966
Salmoninae	ANCESTRAL SPECIES	673												ENSGT00950000182963.b.b.w.b	ENSGT00390000005569.l	ENSGT00530000063624.B.i	ENSGT00940000157843.r	ENSGT00390000018904.h #22	ENSGT00940000158132.m.a.d #23	ENSGT00940000165121.b.c	ENSGT00950000183068.a.a.a.b.c.b #21	ENSGT00950000183068.a.a.a.b.d #21	ENSGT00940000164406.o.b	ENSGT01060000248564.b.a.b.b.b.a.d	ENSGT00950000182962.a.b.a.c.b	ENSGT01050000244937.a.b.a.a.c.a.a.a
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f	ENSGT00940000162034	ENSGT00940000160883.b.f	ENSGT00940000165991	ENSGT00940000164592.e	ENSGT00940000153284.a.mc.a.e	ENSGT00940000153904.b.f	ENSGT00950000182963.b.b.w.b	ENSGT00390000005569.l	ENSGT00530000063624.B.i	ENSGT01030000235770	ENSGT00940000157843.r	ENSGT00390000018904.h #22	ENSGT00940000158132.m.a.d #23	ENSGT00940000165121.b.c	ENSGT00950000183068.a.a.a.b.c.b #21	ENSGT00940000164406.o.b	ENSGT01060000248564.b.a.b.b.b.a.d	ENSGT00950000182962.a.b.a.c.b	ENSGT01050000244937.a.b.a.a.c.a.a.a	ENSGT01050000244937.a.b.a.a.c.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d.a	ENSGT00940000153763.a.c	ENSGT00940000159479.r	ENSGT00940000158857	ENSGT00940000160940	ENSGT00510000050937.e.b
Salmo	ANCESTRAL SPECIES	51	ENSGT00940000153669.b.q	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.e	ENSGT00940000162034	ENSGT00940000160883.b.f	ENSGT00940000165991	ENSGT00940000164592.e	ENSGT00940000153284.a.mc.a.e	ENSGT00940000153904.b.f	ENSGT00950000182963.b.b.w.b	ENSGT00390000005569.l	ENSGT00530000063624.B.i	ENSGT01030000235770	ENSGT00940000157843.r	ENSGT00390000018904.h #22	ENSGT00940000158132.m.a.d #23	ENSGT00940000165121.b.c	ENSGT00950000183068.a.a.a.b.c.b #21	ENSGT00940000164406.o.b	ENSGT01060000248564.b.a.b.b.b.a.d	ENSGT00950000182962.a.b.a.c.b	ENSGT01050000244937.a.b.a.a.c.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d.a	ENSGT00940000153763.a.c	ENSGT00940000159479.q.b	ENSGT00940000158857	ENSGT00940000160940	ENSGT00510000050937.e.b	ENSGT00950000183118.A.c.b.a
River trout	MODERN SPECIES	35	cd99l2 (ENSSTUG00000000614)	mtmr1a (ENSSTUG00000000683)	ankrd46b (ENSSTUG00000001396)	ENSSTUG00000001409	ENSSTUG00000001415	ENSSTUG00000001422	ENSSTUG00000001461	gc2 (ENSSTUG00000001503)	rasl11a (ENSSTUG00000001972)	ENSSTUG00000001995	arhgap36 (ENSSTUG00000002040)	ENSSTUG00000002055	ENSSTUG00000002060	ENSSTUG00000002063	hdac8 (ENSSTUG00000002071)	vbp1 (ENSSTUG00000002077) #22	RAB39B (ENSSTUG00000002101) #23	zgc:162171 (ENSSTUG00000002108)	ENSSTUG00000002116 #21	ENSSTUG00000002124	htr2cl1 (ENSSTUG00000002127)	ENSSTUG00000002136	CLCN5 (ENSSTUG00000002190)	ENSSTUG00000003369	bmp15 (ENSSTUG00000003379)	PHKA1 (ENSSTUG00000003517)	m1ap (ENSSTUG00000005188)	dok1b (ENSSTUG00000005217)	nagk (ENSSTUG00000005226)	PAIP2B (ENSSTUG00000005271)	hspa12b (ENSSTUG00000005289)
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000108082	ENSSSAG00000116688	ankrd46b (ENSSSAG00000009874)	ENSSSAG00000041304	ENSSSAG00000108543	ENSSSAG00000041266	ENSSSAG00000095721	gc2 (ENSSSAG00000111963)	rasl11a (ENSSSAG00000112601)	ENSSSAG00000055767	arhgap36 (ENSSSAG00000055688)	ENSSSAG00000070869	rps4x (ENSSSAG00000043043)	cited1 (ENSSSAG00000090464)	ENSSSAG00000099296	vbp1 (ENSSSAG00000070854) #22	ENSSSAG00000085835 #23	zgc:162171 (ENSSSAG00000070840)	ENSSSAG00000070755 #21	ENSSSAG00000070698	ENSSSAG00000070685	zgc:109889 (ENSSSAG00000056931)	htr2cl1 (ENSSSAG00000094372)	ccnb3 (ENSSSAG00000070665)	ENSSSAG00000082363	ENSSSAG00000070441	ENSSSAG00000090671	ENSSSAG00000070423	ENSSSAG00000043778	bmp15 (ENSSSAG00000043917)	ENSSSAG00000103279
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f	ENSGT00940000160883.b.f	ENSGT00940000165991	ENSGT00940000164592.e	ENSGT00940000153284.a.mc.a.e	ENSGT00940000153904.b.f	ENSGT00950000182963.b.b.w.b	ENSGT00390000005569.l	ENSGT00530000063624.B.i	ENSGT01030000235063.g.a	ENSGT00390000018904.h #22	ENSGT00940000158132.m.a.d #23	ENSGT00940000165121.b.c	ENSGT00950000183068.a.a.a.b.c.b #21	ENSGT00950000183068.a.a.a.b.d #21	ENSGT00940000164406.o.b	ENSGT01060000248564.b.a.b.b.b.a.d	ENSGT00950000182962.a.b.a.c.b	ENSGT01050000244937.a.b.a.a.c.a.a.a	ENSGT01070000253816.a.a.a.d.a	ENSGT00940000153763.a.c	ENSGT00940000159479.r	ENSGT00940000158857	ENSGT00940000160940	ENSGT00510000050937.e.b	ENSGT00950000183118.A.c.b.a.g
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000001584	ENSOMYG00000001509	gc2 (ENSOMYG00000001466)	rasl11a (ENSOMYG00000028786)	ENSOMYG00000027833	ENSOMYG00000063627	arhgap36 (ENSOMYG00000027610)	ENSOMYG00000027591	rps4x (ENSOMYG00000027364)	cited1 (ENSOMYG00000027426)	ENSOMYG00000064526	ENSOMYG00000067552	hdac8 (ENSOMYG00000027430)	ENSOMYG00000048544	ENSOMYG00000027445	vbp1 (ENSOMYG00000027407) #22	ENSOMYG00000036540 #23	zgc:162171 (ENSOMYG00000027469)	ENSOMYG00000027486 #21	ENSOMYG00000027523	ENSOMYG00000065255	zgc:109889 (ENSOMYG00000027344)	htr2cl1 (ENSOMYG00000068997)	ENSOMYG00000071600	ENSOMYG00000060885	ENSOMYG00000066843	ccnb3 (ENSOMYG00000027263)	ENSOMYG00000021128	ENSOMYG00000077352	ENSOMYG00000071807	ENSOMYG00000053926
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000154344.a.e	ENSGT00940000153669.b.q	ENSGT00940000157029.m	ENSGT00730000111366.p	ENSGT00940000157094.a	ENSGT00940000164076.a.a.f	ENSGT00940000160883.b.f	ENSGT00940000165991	ENSGT00940000164592.e	ENSGT00940000153284.a.mc.a.e	ENSGT00940000153904.b.f	ENSGT00950000182963.b.b.w.b	ENSGT00390000005569.l	ENSGT00530000063624.B.i	ENSGT01030000235063.g.a	ENSGT00390000018904.h #22	ENSGT00940000158132.m.a.d #23	ENSGT00940000165121.b.c	ENSGT00950000183068.a.a.a.b.d #21	ENSGT00940000164406.o.b
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005010898	krcp (ENSOTSG00005010899)	ENSOTSG00005010902	ENSOTSG00005010904	ENSOTSG00005010907	ENSOTSG00005010908	ENSOTSG00005010909	cct7 (ENSOTSG00005010917)	hspa12b (ENSOTSG00005010978)	syt4 (ENSOTSG00005010992)	ccnb3 (ENSOTSG00005010993)	rps4x (ENSOTSG00005010994)	cited1 (ENSOTSG00005011016)	ENSOTSG00005011021	ENSOTSG00005011023	vbp1 (ENSOTSG00005011025) #22	RAB39B (ENSOTSG00005011028) #23	zgc:162171 (ENSOTSG00005011031)	ENSOTSG00005011034	ENSOTSG00005011035	ENSOTSG00005011036	ENSOTSG00005011038	ankrd46b (ENSOTSG00005011040)	rnaseka (ENSOTSG00005011050)	ENSOTSG00005011051	rnaseka (ENSOTSG00005011052)	C17orf49 (ENSOTSG00005011053)	ache (ENSOTSG00005011056)	ENSOTSG00005011057	NAT16 (ENSOTSG00005011067)	ENSOTSG00005011069
Coho salmon	MODERN SPECIES	7	ENSOKIG00005031849	ENSOKIG00005031836	ankrd46b (ENSOKIG00005031807)	ENSOKIG00005031798	ENSOKIG00005031791	ENSOKIG00005031778	ENSOKIG00005031771	gc2 (ENSOKIG00005031281)	rasl11a (ENSOKIG00005031171)	ENSOKIG00005030934	arhgap36 (ENSOKIG00005030908)	ENSOKIG00005030898	rps4x (ENSOKIG00005030816)	cited1 (ENSOKIG00005030808)	ENSOKIG00005030781	vbp1 (ENSOKIG00005030750) #22	RAB39B (ENSOKIG00005030738) #23	zgc:162171 (ENSOKIG00005030722)	ENSOKIG00005030612 #21	ENSOKIG00005030119	htr2cl1 (ENSOKIG00005030079)	zgc:109889 (ENSOKIG00005030069)	ENSOKIG00005030051	ccnb3 (ENSOKIG00005030008)	ENSOKIG00005029982	ENSOKIG00005029619	ENSOKIG00005029584	ENSOKIG00005029569	bmp15 (ENSOKIG00005029544)	leap2 (ENSOKIG00005029533)	ENSOKIG00005028520
Huchen	MODERN SPECIES	3041													rps4x (ENSHHUG00000005784)	cited1 (ENSHHUG00000005842)	ENSHHUG00000005855	vbp1 (ENSHHUG00000005880) #22	RAB39B (ENSHHUG00000005902) #23	zgc:162171 (ENSHHUG00000005913)	ENSHHUG00000005920	ENSHHUG00000005949 #21	ENSHHUG00000006039	ENSHHUG00000006046	ENSHHUG00000006076
Northern pike	MODERN SPECIES	23	ENSELUG00000014617	ankrd46b (ENSELUG00000024842)	ENSELUG00000012911	ENSELUG00000031869	ENSELUG00000012957	COL4A5 (ENSELUG00000013002)	ENSELUG00000013023	gc2 (ENSELUG00000001313)	rasl11a (ENSELUG00000013206)	ENSELUG00000013283	arhgap36 (ENSELUG00000013403)	ENSELUG00000013542	ENSELUG00000013638	rps4x (ENSELUG00000013768)	hdac8 (ENSELUG00000013857)	vbp1 (ENSELUG00000013935) #22	RAB39B (ENSELUG00000013957) #23	zgc:162171 (ENSELUG00000027083)	ENSELUG00000014028 #21	chrd1 (ENSELUG00000014106)	ENSELUG00000014415	ENSELUG00000014480	ENSELUG00000029980	zgc:109889 (ENSELUG00000014559)	htr2cl1 (ENSELUG00000026854)	ENSELUG00000034299	ccnb3 (ENSELUG00000000440)	ENSELUG00000012169	CLCN5 (ENSELUG00000012244)	ENSELUG00000012327	ENSELUG00000012379
Acanthomorphata	ANCESTRAL SPECIES	142																ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940	ENSGT00510000050937
Euacanthomorphacea	ANCESTRAL SPECIES	41														ENSGT00940000178839	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940	ENSGT00510000050937
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00940000154888.b	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.A.b.a	ENSGT00940000178839	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940	ENSGT00510000050937
Tiger tail seahorse	MODERN SPECIES	181	NAT16 (ENSHCOG00000002585)	alox12 (ENSHCOG00000002575)	ENSHCOG00000002563	ENSHCOG00000002556	abce1 (ENSHCOG00000002544)	ENSHCOG00000002535	ENSHCOG00000002528	lpcat4 (ENSHCOG00000002520)	emc4 (ENSHCOG00000002515)	ENSHCOG00000002504	ENSHCOG00000002499	ADCY4 (ENSHCOG00000021025)	ENSHCOG00000020964	btr18 (ENSHCOG00000020889)	ENSHCOG00000019783	vbp1 (ENSHCOG00000019765) #22	RAB39B (ENSHCOG00000019732) #23	zgc:162171 (ENSHCOG00000019724)	rasl11a (ENSHCOG00000019709)	ENSHCOG00000019702	arhgap36 (ENSHCOG00000019651)	ENSHCOG00000019611	rps4x (ENSHCOG00000019605)	cited1 (ENSHCOG00000000655)	znf16l (ENSHCOG00000019583)	ENSHCOG00000019569	cd248a (ENSHCOG00000019556)	RCE1 (ENSHCOG00000019531)	PELI3 (ENSHCOG00000000520)	ENSHCOG00000019468	btg3 (ENSHCOG00000019452)
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.d	ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000163160.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT01100000263729	ENSGT01030000234574.A.b.b.g	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.d	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000163160.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT01100000263644	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000163160.b.a.a	ENSGT00940000163009.b.a.a.b.b	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a
Cyprinodontiformes	ANCESTRAL SPECIES	22		ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000163160.b.a.a.l.a	ENSGT00940000163160.b.a.a.l.b	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a
Aplocheiloidei	ANCESTRAL SPECIES	381															ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23
Mangrove rivulus	MODERN SPECIES	1032																vbp1 (ENSKMAG00000016209) #22	RAB39B (ENSKMAG00000016221) #23
Turquoise killifish	MODERN SPECIES	420													ENSNFUG00015009340	ENSNFUG00015009319	ENSNFUG00015009306	vbp1 (ENSNFUG00015009274) #22	RAB39B (ENSNFUG00015009249) #23	ENSNFUG00015009238
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT01100000263538.A.a.a.a.j.b.b	ENSGT01100000263538.A.a.a.a.k	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.b	ENSGT00940000163160.b.a.a.l.a	ENSGT00940000163852.c.a.a.a.a	ENSGT00940000163160.b.a.a.l.b	ENSGT00940000163009.b.a.a.b.b.t	ENSGT00940000160459	ENSGT00650000094770
Poeciliinae	ANCESTRAL SPECIES	37	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT01100000263538.A.a.a.a.k	ENSGT01100000263538.A.a.a.a.j.b.b	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.b	ENSGT00940000163160.b.a.a.l.a	ENSGT00940000163852.c.a.a.a.a	ENSGT00940000163160.b.a.a.l.b	ENSGT00940000163009.b.a.a.b.b.t	ENSGT00940000160459	ENSGT00650000094770
Poecilia	ANCESTRAL SPECIES	58	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT01100000263538.A.a.a.a.k	ENSGT01100000263538.A.a.a.a.j.b.b	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.b	ENSGT00940000163160.b.a.a.l.a	ENSGT00940000163009.b.a.a.b.b.t.a	ENSGT00940000163160.b.a.a.l.b	ENSGT00940000163009.b.a.a.b.b.t.b	ENSGT00940000160459	ENSGT00650000094770
NAME_6	ANCESTRAL SPECIES	104	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.a	ENSGT01100000263538.A.a.a.a.j.b.b	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.b	ENSGT00940000163160.b.a.a.l.a	ENSGT00940000163009.b.a.a.b.b.t.a	ENSGT00940000163160.b.a.a.l.b	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d
Sailfin molly	MODERN SPECIES	147	ENSPLAG00000019161	ENSPLAG00000019109	supt16h (ENSPLAG00000019083)	tox4b (ENSPLAG00000018998)	SLC12A6 (ENSPLAG00000018982)	nop10 (ENSPLAG00000018858)	lpcat4 (ENSPLAG00000018852)	emc4 (ENSPLAG00000018845)	ENSPLAG00000018827	ENSPLAG00000018812	ENSPLAG00000018743	ENSPLAG00000018730	ENSPLAG00000018700	ENSPLAG00000018389	ENSPLAG00000018373	vbp1 (ENSPLAG00000018355) #22	RAB39B (ENSPLAG00000018322) #23	zgc:162171 (ENSPLAG00000018312)	ENSPLAG00000018290 #21	ENSPLAG00000018171	ENSPLAG00000018147	ENSPLAG00000018131
Amazon molly	MODERN SPECIES	380	tox4b (ENSPFOG00000002336)	SLC12A6 (ENSPFOG00000002419)	nop10 (ENSPFOG00000002606)	lpcat4 (ENSPFOG00000002612)	emc4 (ENSPFOG00000002751)	ENSPFOG00000002804	ENSPFOG00000002876	ENSPFOG00000003345	ENSPFOG00000003441	ENSPFOG00000003521	ENSPFOG00000003651	ENSPFOG00000020102	ENSPFOG00000004041	ENSPFOG00000020104	ENSPFOG00000004076	vbp1 (ENSPFOG00000004590) #22	RAB39B (ENSPFOG00000004684) #23	zgc:162171 (ENSPFOG00000004726)	ENSPFOG00000004762 #21	zgc:92429 (ENSPFOG00000005028)	ENSPFOG00000005187	ENSPFOG00000005585	zgc:109889 (ENSPFOG00000005603)	htr2cl1 (ENSPFOG00000005677)	ENSPFOG00000022442	ENSPFOG00000005735	ENSPFOG00000023491	ccnb3 (ENSPFOG00000005860)	ENSPFOG00000023849	ENSPFOG00000023285	tnfsf10l (ENSPFOG00000005940)
Guppy	MODERN SPECIES	448	SLC12A6 (ENSPREG00000009136)	nop10 (ENSPREG00000009335)	lpcat4 (ENSPREG00000009344)	emc4 (ENSPREG00000009381)	ENSPREG00000009389	ENSPREG00000009404	ENSPREG00000009430	ENSPREG00000009460	ENSPREG00000009478	ENSPREG00000009497	ENSPREG00000009513	ENSPREG00000009536	ENSPREG00000009552	ENSPREG00000009559	ENSPREG00000009571	vbp1 (ENSPREG00000009585) #22	RAB39B (ENSPREG00000009597) #23	zgc:162171 (ENSPREG00000009603)	ENSPREG00000009621 #21	zgc:92429 (ENSPREG00000009692)	ENSPREG00000009734	ENSPREG00000009871	zgc:109889 (ENSPREG00000009886)	htr2cl1 (ENSPREG00000009917)	ENSPREG00000009928	ENSPREG00000009935	ENSPREG00000009945	ENSPREG00000009952	ENSPREG00000009980	ENSPREG00000010124	ENSPREG00000010132
NAME_4	ANCESTRAL SPECIES	201	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01100000263538.A.a.a.a.j.b.b	ENSGT01100000263538.A.a.a.a.k	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a
Mummichog	MODERN SPECIES	363															ENSFHEG00000002876	vbp1 (ENSFHEG00000002881) #22	RAB39B (ENSFHEG00000002885) #23	zgc:162171 (ENSFHEG00000000087)	ENSFHEG00000002909 #21	zgc:92429 (ENSFHEG00000002938)	ENSFHEG00000002958	ENSFHEG00000002971	zgc:109889 (ENSFHEG00000002979)	htr2cl1 (ENSFHEG00000002990)
Sheepshead minnow	MODERN SPECIES	473	SLC12A6 (ENSCVAG00000015571)	nop10 (ENSCVAG00000015581)	lpcat4 (ENSCVAG00000015624)	ENSCVAG00000015631	emc4 (ENSCVAG00000015639)	ENSCVAG00000015709	ENSCVAG00000015744	ENSCVAG00000015749	ENSCVAG00000015774	ENSCVAG00000015784	ENSCVAG00000015791	ENSCVAG00000015797	ENSCVAG00000015810	ENSCVAG00000015817	ENSCVAG00000015821	vbp1 (ENSCVAG00000015845) #22	RAB39B (ENSCVAG00000015862) #23	zgc:162171 (ENSCVAG00000015879)	ENSCVAG00000015898 #21
Oryzias	ANCESTRAL SPECIES	29	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a	ENSGT00390000006734.a	ENSGT00940000159147.b.b	ENSGT00950000182991.A.b.b	ENSGT00990000203615.b.a.a.a.a.g.b	ENSGT00940000158388	ENSGT00940000163711.a.a.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.c	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.`c.b	ENSGT00940000160940	ENSGT00390000019377.a.a.b
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a	ENSGT00390000006734.a	ENSGT00940000159147.b.b	ENSGT00950000182991.A.b.b	ENSGT00990000203615.b.a.a.a.a.g.b	ENSGT00990000203754.c.d	ENSGT00940000158388	ENSGT00940000163711.a.a.b	ENSGT01040000240385.A.a.a.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.c	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.`c.b	ENSGT00940000160940	ENSGT00390000019377.a.a.b
Indian medaka	MODERN SPECIES	19	actn3a (ENSOMEG00000017089)	prkd4 (ENSOMEG00000017159)	ENSOMEG00000017223	pacs1a (ENSOMEG00000017404)	sf3b2 (ENSOMEG00000017480)	capn1 (ENSOMEG00000017575)	pnp5a (ENSOMEG00000017606)	KCNJ10 (ENSOMEG00000017634)	ENSOMEG00000017659	ENSOMEG00000017677	ENSOMEG00000017693	ENSOMEG00000017716	tmem185 (ENSOMEG00000017753)	ENSOMEG00000017798	ENSOMEG00000017821	vbp1 (ENSOMEG00000017845) #22	RAB39B (ENSOMEG00000017881) #23	zgc:162171 (ENSOMEG00000017903)	ENSOMEG00000018197 #21	ENSOMEG00000018275	zgc:92429 (ENSOMEG00000018307)	ENSOMEG00000018638	ENSOMEG00000018707	zgc:109889 (ENSOMEG00000018734)	htr2cl1 (ENSOMEG00000018784)	ENSOMEG00000018809	ENSOMEG00000000490	tnfsf10l (ENSOMEG00000018847)	CLCN5 (ENSOMEG00000018993)	ENSOMEG00000019033	ENSOMEG00000019047
Javanese ricefish	MODERN SPECIES	9	pacs1a (ENSOJAG00000016750)	sf3b2 (ENSOJAG00000016538)	capn1 (ENSOJAG00000010776)	pnp5a (ENSOJAG00000010087)	KCNJ10 (ENSOJAG00000010046)	ENSOJAG00000010021	ENSOJAG00000010011	ENSOJAG00000009988	ENSOJAG00000009938	ENSOJAG00000009891	ENSOJAG00000009811	tmem185 (ENSOJAG00000009774)	ENSOJAG00000009765	ENSOJAG00000009757	ENSOJAG00000009744	vbp1 (ENSOJAG00000009734) #22	RAB39B (ENSOJAG00000009719) #23	zgc:162171 (ENSOJAG00000009711)	ENSOJAG00000009494 #21	zgc:92429 (ENSOJAG00000009449)	ENSOJAG00000007249	ENSOJAG00000007053	ENSOJAG00000007014	htr2cl1 (ENSOJAG00000006996)	ENSOJAG00000006985	ENSOJAG00000006977	ENSOJAG00000006949	ENSOJAG00000006944	ENSOJAG00000006932	ccnb3 (ENSOJAG00000006874)	tnfsf10l (ENSOJAG00000006861)
Oryzias_a	ANCESTRAL SPECIES	33	ENSGT00940000160940	ENSGT00940000159479.ac	ENSGT00940000159479.`c.b	ENSGT00940000153763.a	ENSGT01070000253816.a.a.a.d	ENSGT00940000160459	ENSGT00940000163852.c.a.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00950000182962.a.b.a.c	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00940000164406	ENSGT00940000159429	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000165121.b	ENSGT00940000158132.m.a.b #23	ENSGT00390000018904 #22	ENSGT00940000158388	ENSGT00990000203615.b.a.a.a.a.g.b	ENSGT00950000182991.A.b.b	ENSGT00940000159147.b.b	ENSGT00390000006734.a	ENSGT00950000183209.a	ENSGT00940000166677	ENSGT00950000183024.a.a.a	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00950000182923.A	ENSGT00940000165459.a.a.a	ENSGT00940000165968	ENSGT00940000165710
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000023773	ENSORLG00000008602	tnfsf10l (ENSORLG00000008504)	ccnb3 (ENSORLG00000008493)	ENSORLG00000008481	ENSORLG00000008474	htr2cl1 (ENSORLG00000008442)	zgc:109889 (ENSORLG00000008438)	ENSORLG00000002160	ENSORLG00000008422	ENSORLG00000008408	zgc:92429 (ENSORLG00000008366)	ENSORLG00000026347 #21	zgc:162171 (ENSORLG00000024840)	ENSORLG00000008345 #23	vbp1 (ENSORLG00000008340) #22	tmem185 (ENSORLG00000008310)	ENSORLG00000024246	pnp5a (ENSORLG00000008292)	capn1 (ENSORLG00000008280)	sf3b2 (ENSORLG00000008235)	ENSORLG00000028122	pacs1a (ENSORLG00000008177)	ENSORLG00000008133	prkd4 (ENSORLG00000008092)	actn3a (ENSORLG00000008067)	rbm14b (ENSORLG00000008051)	ccs (ENSORLG00000008041)	GAL3ST3 (ENSORLG00000008014)	ENSORLG00000008010	ENSORLG00000021943
Chinese medaka	MODERN SPECIES	1149															ENSOSIG00000000938	vbp1 (ENSOSIG00000000932) #22
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT01100000263729	ENSGT01030000234574.A.b.b.g	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000163160.b.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616	ENSGT00940000159479
Pomacentridae	ANCESTRAL SPECIES	37	ENSGT01030000234574.A.b.b.h	ENSGT01100000263729	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	404	nop10 (ENSSPAG00000012478)	lpcat4 (ENSSPAG00000012459)	ENSSPAG00000012446	emc4 (ENSSPAG00000012429)	ENSSPAG00000012377	ADCY4 (ENSSPAG00000011311)	ENSSPAG00000011142	ENSSPAG00000011109	ENSSPAG00000011098	ENSSPAG00000011083	ENSSPAG00000011075	ENSSPAG00000011057	ENSSPAG00000011050	ENSSPAG00000010998	ENSSPAG00000010987	vbp1 (ENSSPAG00000010977) #22	RAB39B (ENSSPAG00000010958) #23	vbp1 (ENSSPAG00000010934) #22	RAB39B (ENSSPAG00000010919) #23	zgc:162171 (ENSSPAG00000010893)	ENSSPAG00000010878
Bicolor damselfish	MODERN SPECIES	404	ENSSPAG00000012446	emc4 (ENSSPAG00000012429)	ENSSPAG00000012377	ADCY4 (ENSSPAG00000011311)	ENSSPAG00000011142	ENSSPAG00000011109	ENSSPAG00000011098	ENSSPAG00000011083	ENSSPAG00000011075	ENSSPAG00000011057	ENSSPAG00000011050	ENSSPAG00000010998	ENSSPAG00000010987	vbp1 (ENSSPAG00000010977) #22	RAB39B (ENSSPAG00000010958) #23	vbp1 (ENSSPAG00000010934) #22	RAB39B (ENSSPAG00000010919) #23	zgc:162171 (ENSSPAG00000010893)	ENSSPAG00000010878
Pomacentridae_A	ANCESTRAL SPECIES	212													ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00940000175992	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406.u.a	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a
Amphiprion	ANCESTRAL SPECIES	142	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.d	ENSGT00940000177380.f	ENSGT00940000177388.d	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00940000175992	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406.u.a	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000016854	emc4 (ENSAPEG00000016828)	ENSAPEG00000016737	ENSAPEG00000016663	ENSAPEG00000016644	ENSAPEG00000016608	ENSAPEG00000016581	ENSAPEG00000016548	ENSAPEG00000016471	ENSAPEG00000016444	ENSAPEG00000016425	ENSAPEG00000016410	ENSAPEG00000016394	ENSAPEG00000016231	ENSAPEG00000016211	vbp1 (ENSAPEG00000016200) #22	RAB39B (ENSAPEG00000016172) #23	zgc:162171 (ENSAPEG00000016151)	ENSAPEG00000016052 #21	zgc:92429 (ENSAPEG00000015973)	ENSAPEG00000015925 #21	ENSAPEG00000015898	ENSAPEG00000015776	ENSAPEG00000015741	zgc:109889 (ENSAPEG00000015644)	htr2cl1 (ENSAPEG00000015608)	ENSAPEG00000015585	aspdh (ENSAPEG00000015547)	tmem86b (ENSAPEG00000015480)	ENSAPEG00000015413	ccnb3 (ENSAPEG00000015333)
Clown anemonefish	MODERN SPECIES	2744															ENSAOCG00000007883	vbp1 (ENSAOCG00000007910) #22	RAB39B (ENSAOCG00000007928) #23	zgc:162171 (ENSAOCG00000007937)	ENSAOCG00000007944
Spiny chromis	MODERN SPECIES	1876													ENSAPOG00000015091	ENSAPOG00000015078	ENSAPOG00000015029	vbp1 (ENSAPOG00000015010) #22	RAB39B (ENSAPOG00000014970) #23	zgc:162171 (ENSAPOG00000014962)
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g	ENSGT01030000234574.A.b.b.h	ENSGT01100000263729	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163852.c.a.a.e.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00390000012955	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163009.b.a.a.b.b.ab	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	35	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00940000174164	ENSGT00940000162108.z.b.b.a.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163852.c.a.a.e.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Haplochromini	ANCESTRAL SPECIES	39	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g.b	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.d.b	ENSGT00940000162108.z.b.b.a.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT01060000248575.D.c.b.b.a.k.a.a.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000166278.B.b.b	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163852.c.a.a.e.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d
Burton s mouthbrooder	MODERN SPECIES	595															ENSHBUG00000013671	vbp1 (ENSHBUG00000013644) #22	RAB39B (ENSHBUG00000013570) #23	zgc:162171 (ENSHBUG00000013548)	ENSHBUG00000013501	ENSHBUG00000013426 #21	zgc:92429 (ENSHBUG00000013378)	ENSHBUG00000013370	ENSHBUG00000013353	ENSHBUG00000013328	ENSHBUG00000013025	zgc:109889 (ENSHBUG00000013021)	htr2cl1 (ENSHBUG00000012966)
Haplochromini_A	ANCESTRAL SPECIES	56	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g.b	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00940000174164	ENSGT00940000162108.z.b.b.a.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT01060000248575.D.c.b.b.a.k.a.a.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000166278.B.b.b.e.a.a	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163852.c.a.a.e.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d
P. nyererei	MODERN SPECIES	504												dad1 (ENSPNYG00000019043)	ENSPNYG00000019097	ENSPNYG00000019123	ENSPNYG00000019168	vbp1 (ENSPNYG00000019264) #22	RAB39B (ENSPNYG00000019276) #23	zgc:162171 (ENSPNYG00000019295)	ENSPNYG00000019331	ENSPNYG00000019435 #21	zgc:92429 (ENSPNYG00000019495)	ENSPNYG00000019537	ENSPNYG00000019552	ENSPNYG00000019633	zgc:109889 (ENSPNYG00000019641)	ENSPNYG00000019668	htr2cl1 (ENSPNYG00000019682)	ENSPNYG00000019726	ENSPNYG00000019738
Haplochromini_B	ANCESTRAL SPECIES	65	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b.g.b	ENSGT01030000234574.A.b.b.h	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00950000182977.B.b.a.c.b.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a.b #23	ENSGT00940000165121.b	ENSGT01060000248575.D.c.b.b.a.k.a.a.a.a.a.a.a.a	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a.e.b	ENSGT00940000163160.b.a.a.h.a.b	ENSGT00940000163852.c.a.a.e.a.b	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a
Eastern happy	DUPLICATION
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	15	ENSACLG00000023274	ENSACLG00000023245	ENSACLG00000023145	ENSACLG00000023128	ENSACLG00000023115	ENSACLG00000023108	ENSACLG00000023105	ENSACLG00000023099	ENSACLG00000023095	ENSACLG00000023086	ENSACLG00000023073	ENSACLG00000023051	ENSACLG00000023036	ENSACLG00000023027	ENSACLG00000022986	vbp1 (ENSACLG00000022908) #22	ENSACLG00000022902	RAB39B (ENSACLG00000022893) #23	zgc:162171 (ENSACLG00000022882)	ENSACLG00000022873	ENSACLG00000022867	ENSACLG00000022857	ENSACLG00000022825	ENSACLG00000022810	ENSACLG00000022791	ENSACLG00000022481 #21	zgc:92429 (ENSACLG00000022391)	ENSACLG00000022133	ENSACLG00000022119	ENSACLG00000022115	zgc:109889 (ENSACLG00000022099)
Eastern happy	MODERN SPECIES	159																vbp1 (ENSACLG00000027595) #22	RAB39B (ENSACLG00000027590) #23	zgc:162171 (ENSACLG00000027587)
Eastern happy	MODERN SPECIES	153																vbp1 (ENSACLG00000027427) #22
Zebra mbuna	MODERN SPECIES	13	lpcat4 (ENSMZEG00005021142)	lpcat4 (ENSMZEG00005021145)	emc4 (ENSMZEG00005021149)	ENSMZEG00005021154	ENSMZEG00005021157	ENSMZEG00005021168	ENSMZEG00005021175	ENSMZEG00005021179	ENSMZEG00005021184	ENSMZEG00005021191	ENSMZEG00005021195	ENSMZEG00005021198	ENSMZEG00005021202	ENSMZEG00005021205	ENSMZEG00005021210	vbp1 (ENSMZEG00005021217) #22	RAB39B (ENSMZEG00005021222) #23	zgc:162171 (ENSMZEG00005021226)	ENSMZEG00005021228	ENSMZEG00005021231
Lyretail cichlid	MODERN SPECIES	467										dad1 (ENSNBRG00000018444)	ENSNBRG00000018428	ENSNBRG00000018400	ENSNBRG00000018379	ENSNBRG00000018266	ENSNBRG00000018189	vbp1 (ENSNBRG00000018132) #22	RAB39B (ENSNBRG00000018106) #23	zgc:162171 (ENSNBRG00000018099)	ENSNBRG00000018017 #21	zgc:92429 (ENSNBRG00000017976)	ENSNBRG00000017837	ENSNBRG00000017798	zgc:109889 (ENSNBRG00000017769)	htr2cl1 (ENSNBRG00000017742)	ENSNBRG00000017702
Nile tilapia	MODERN SPECIES	15	ENSONIG00000038078	ENSONIG00000000311	ENSONIG00000015567	ENSONIG00000039564	ENSONIG00000000317	ENSONIG00000036803	ENSONIG00000034095	ENSONIG00000042682	ENSONIG00000041836	ENSONIG00000033294	ENSONIG00000035532	ENSONIG00000038468	ENSONIG00000028522	ENSONIG00000031235	ENSONIG00000040272	vbp1 (ENSONIG00000006999) #22	RAB39B (ENSONIG00000006997) #23	zgc:162171 (ENSONIG00000006996)	ENSONIG00000040012	ENSONIG00000040335	ENSONIG00000039627	ENSONIG00000038944	ENSONIG00000033633	ENSONIG00000006985 #21	zgc:92429 (ENSONIG00000006980)	ENSONIG00000006968	ENSONIG00000006967	zgc:109889 (ENSONIG00000029240)	htr2cl1 (ENSONIG00000006962)	ENSONIG00000038226	ENSONIG00000039388
Midas cichlid	MODERN SPECIES	685												ENSACIG00000023821	ENSACIG00000023825	ENSACIG00000023828	ENSACIG00000023830	vbp1 (ENSACIG00000023834) #22	RAB39B (ENSACIG00000023837) #23	zgc:162171 (ENSACIG00000023841)
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616	ENSGT00940000159479
Eupercaria	ANCESTRAL SPECIES	19	ENSGT01100000263644	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b.e.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b.e.a	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Ballan wrasse	MODERN SPECIES	328			emc4 (ENSLBEG00000022165)	ENSLBEG00000022193	ENSLBEG00000022240	ENSLBEG00000022324	ENSLBEG00000022360	ENSLBEG00000022404	ENSLBEG00000022459	ENSLBEG00000022482	ENSLBEG00000022499	ENSLBEG00000022516	ENSLBEG00000022534	ENSLBEG00000022549	ENSLBEG00000022581	vbp1 (ENSLBEG00000022604) #22	RAB39B (ENSLBEG00000022630) #23	zgc:162171 (ENSLBEG00000022649)	ENSLBEG00000022711 #21	zgc:92429 (ENSLBEG00000022845)	ENSLBEG00000022909	ENSLBEG00000022970	zgc:109889 (ENSLBEG00000023001)	htr2cl1 (ENSLBEG00000023033)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b.e.a	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e.g	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000013973.A.b.h	ENSGT01060000248575.D.c.b.a.a	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b	ENSGT00390000006970	ENSGT01100000263644	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e.g	ENSGT00940000164991.a.a	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Pike perch	MODERN SPECIES	19	tox4b (ENSSLUG00000001415)	SLC12A6 (ENSSLUG00000000630)	nop10 (ENSSLUG00000000273)	lpcat4 (ENSSLUG00000000264)	ENSSLUG00000010008	emc4 (ENSSLUG00000009998)	ENSSLUG00000009981	ENSSLUG00000009960	ENSSLUG00000009954	ENSSLUG00000009949	ENSSLUG00000009941	ENSSLUG00000009931	ENSSLUG00000009927	ENSSLUG00000009922	ENSSLUG00000009919	vbp1 (ENSSLUG00000009912) #22	RAB39B (ENSSLUG00000009910) #23	zgc:162171 (ENSSLUG00000009907)	ENSSLUG00000009624 #21	zgc:92429 (ENSSLUG00000009580)	ENSSLUG00000008942	ENSSLUG00000008872	zgc:109889 (ENSSLUG00000008856)	htr2cl1 (ENSSLUG00000008836)	ENSSLUG00000008814	ccnb3 (ENSSLUG00000008796)	tnfsf10l (ENSSLUG00000008785)	CLCN5 (ENSSLUG00000002720)	ENSSLUG00000002470	bmp15 (ENSSLUG00000002460)	leap2 (ENSSLUG00000002457)
Channel bull blenny	MODERN SPECIES	9	lpcat4 (ENSCGOG00000016421)	emc4 (ENSCGOG00000016426)	ENSCGOG00000016432	ENSCGOG00000016438	ADCY4 (ENSCGOG00000016507)	ENSCGOG00000016780	ENSCGOG00000016784	ENSCGOG00000016790	ENSCGOG00000016797	ENSCGOG00000016799	ENSCGOG00000016800	ENSCGOG00000016804	ENSCGOG00000016808	ENSCGOG00000016810	ENSCGOG00000016811	vbp1 (ENSCGOG00000016817) #22	RAB39B (ENSCGOG00000016822) #23	zgc:162171 (ENSCGOG00000016827)	ENSCGOG00000016828 #21	ENSCGOG00000016842	ENSCGOG00000016843	ENSCGOG00000016847	mrpl48 (ENSCGOG00000016848)	ENSCGOG00000016851	ENSCGOG00000016853	ENSCGOG00000016855	ENSCGOG00000016860	zgc:92429 (ENSCGOG00000016926)	ENSCGOG00000016989	ENSCGOG00000017823	zgc:109889 (ENSCGOG00000017824)
Cottioidei	ANCESTRAL SPECIES	65																ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Lumpfish	MODERN SPECIES	9	exoc6b (ENSCLMG00005018853)	tkfc (ENSCLMG00005019134)	ENSCLMG00005019368	ENSCLMG00005019370	cmasa (ENSCLMG00005019371)	ovol1a (ENSCLMG00005019372)	mus81 (ENSCLMG00005019373)	tmem185 (ENSCLMG00005019379)	ENSCLMG00005019381	ENSCLMG00005019382	ankrd46b (ENSCLMG00005019383)	ENSCLMG00005019385	ENSCLMG00005019386	col4a5 (ENSCLMG00005019389)	ENSCLMG00005019397	vbp1 (ENSCLMG00005019401) #22	RAB39B (ENSCLMG00005019402) #23	zgc:162171 (ENSCLMG00005004466)	ENSCLMG00005004519 #21	ENSCLMG00005004706	ENSCLMG00005004781	ENSCLMG00005004910	zgc:109889 (ENSCLMG00005004913)	htr2cl1 (ENSCLMG00005004919)	ENSCLMG00005004949	ENSCLMG00005004956	ccnb3 (ENSCLMG00005004958)	tnfsf10l (ENSCLMG00005004961)	CLCN5 (ENSCLMG00005004992)	ENSCLMG00005009439	ENSCLMG00005009441
Stickleback	MODERN SPECIES	348																vbp1 (ENSGACG00000001945) #22	RAB39B (ENSGACG00000001950) #23	zgc:162171 (ENSGACG00000001952)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT01030000234574.A.b.b	ENSGT01100000263729	ENSGT00990000204708	ENSGT00390000006970	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b.e.a	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.eb.b	ENSGT00940000160940	ENSGT00510000050937
European seabass	MODERN SPECIES	4	lpcat4 (ENSDLAG00005033171)	ENSDLAG00005000672	ENSDLAG00005000638	ENSDLAG00005000461	ENSDLAG00005000420	ENSDLAG00005000418	ENSDLAG00005030322	ENSDLAG00005000411	ENSDLAG00005000407	ENSDLAG00005000402	ENSDLAG00005033921	ENSDLAG00005000397	ENSDLAG00005005752	ENSDLAG00005005740	ENSDLAG00005029440	vbp1 (ENSDLAG00005032459) #22	ENSDLAG00005000389 #23	zgc:162171 (ENSDLAG00005034504)	ENSDLAG00005000350 #21	zgc:92429 (ENSDLAG00005000323)	ENSDLAG00005000253	ENSDLAG00005000176	zgc:109889 (ENSDLAG00005000161)	htr2cl1 (ENSDLAG00005000141)	ENSDLAG00005000121	ENSDLAG00005030944	ccnb3 (ENSDLAG00005000101)	tnfsf10l (ENSDLAG00005030386)	ENSDLAG00005021079	ENSDLAG00005021014	ENSDLAG00005021001
Large yellow croaker	MODERN SPECIES	485	ENSLCRG00005000793	emc4 (ENSLCRG00005000813)	ENSLCRG00005000822	lpcat4 (ENSLCRG00005000838)	nop10 (ENSLCRG00005000857)	SLC12A6 (ENSLCRG00005001102)	tox4b (ENSLCRG00005008669)	supt16h (ENSLCRG00005008671)	ENSLCRG00005008687	ENSLCRG00005008688	ENSLCRG00005008689	ENSLCRG00005008691	ENSLCRG00005008696	ENSLCRG00005008697	ENSLCRG00005008699	vbp1 (ENSLCRG00005008700) #22	RAB39B (ENSLCRG00005008701) #23	zgc:162171 (ENSLCRG00005008702)	ENSLCRG00005008709 #21	zgc:92429 (ENSLCRG00005008732)	ENSLCRG00005008762	ENSLCRG00005010741	zgc:109889 (ENSLCRG00005010742)	htr2cl1 (ENSLCRG00005010745)	ENSLCRG00005010747	ENSLCRG00005010748	ccnb3 (ENSLCRG00005010754)	tnfsf10l (ENSLCRG00005010759)	CLCN5 (ENSLCRG00005010769)	ENSLCRG00005010870	ENSLCRG00005010871
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010012996	ENSSAUG00010012994	ENSSAUG00010012992	ENSSAUG00010012990	ENSSAUG00010012989	ENSSAUG00010012986	ENSSAUG00010012983	ENSSAUG00010012980	ENSSAUG00010012963	ENSSAUG00010012952	ENSSAUG00010012947	ENSSAUG00010012944	ENSSAUG00010012939	ENSSAUG00010012936	ENSSAUG00010012933	vbp1 (ENSSAUG00010012931) #22	RAB39B (ENSSAUG00010012929) #23	zgc:162171 (ENSSAUG00010012928)	ENSSAUG00010011133 #21	zgc:92429 (ENSSAUG00010011086)	ENSSAUG00010011085	ENSSAUG00010009128	ENSSAUG00010009053	zgc:109889 (ENSSAUG00010009049)	htr2cl1 (ENSSAUG00010009045)	ccnb3 (ENSSAUG00010009031)	tnfsf10l (ENSSAUG00010009029)	CLCN5 (ENSSAUG00010001785)	ENSSAUG00010001306	ENSSAUG00010011306	ENSSAUG00010011309
Tetraodontidae	ANCESTRAL SPECIES	35	ENSGT01100000263473.a.b.g.b	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563	ENSGT01030000234574.A.b.b	ENSGT00390000006970	ENSGT01100000263729	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000164991.a.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000163520.A.a.a.b.d.b.b.e.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163160.b.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479.db	ENSGT00940000160940	ENSGT00510000050937	ENSGT00950000183118.A.c.b.a
Fugu	MODERN SPECIES	20	tox4b (ENSTRUG00000002594)	SLC12A6 (ENSTRUG00000003205)	nop10 (ENSTRUG00000004834)	lpcat4 (ENSTRUG00000004841)	emc4 (ENSTRUG00000005232)	ENSTRUG00000023378	ENSTRUG00000031844	ENSTRUG00000030473	ENSTRUG00000006694	ENSTRUG00000006947	ENSTRUG00000007106	ENSTRUG00000028458	ENSTRUG00000026126	ENSTRUG00000027619	ENSTRUG00000027276	vbp1 (ENSTRUG00000003390) #22	RAB39B (ENSTRUG00000025018) #23	zgc:162171 (ENSTRUG00000004036)	ENSTRUG00000004246 #21	ENSTRUG00000002169	ENSTRUG00000028480	zgc:109889 (ENSTRUG00000030080)	htr2cl1 (ENSTRUG00000005007)	ENSTRUG00000024753	ccnb3 (ENSTRUG00000005623)	tnfsf10l (ENSTRUG00000005871)	CLCN5 (ENSTRUG00000005959)	ENSTRUG00000033143	ENSTRUG00000020248	ENSTRUG00000030736	ENSTRUG00000023198
Tetraodon	MODERN SPECIES	26	supt16h (ENSTNIG00000003692)	tox4b (ENSTNIG00000003691)	SLC12A6 (ENSTNIG00000003690)	nop10 (ENSTNIG00000000971)	lpcat4 (ENSTNIG00000003689)	emc4 (ENSTNIG00000003688)	ENSTNIG00000003687	ENSTNIG00000000936	ADCY4 (ENSTNIG00000003686)	ENSTNIG00000003685	ENSTNIG00000001445	ENSTNIG00000003684	ENSTNIG00000003683	ENSTNIG00000003682	ENSTNIG00000003681	vbp1 (ENSTNIG00000003680) #22	RAB39B (ENSTNIG00000003679) #23	zgc:162171 (ENSTNIG00000003678)	ENSTNIG00000003677 #21	zgc:92429 (ENSTNIG00000003676)	ENSTNIG00000003675	ENSTNIG00000003671	si:dkey-94e7.2 (ENSTNIG00000008131)	sec61g (ENSTNIG00000001602)	ENSTNIG00000003652	ENSTNIG00000001269	ENSTNIG00000000300	rasl11a (ENSTNIG00000003649)	gc2 (ENSTNIG00000003648)	ENSTNIG00000000935	ENSTNIG00000003646
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT01100000263644.a	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616	ENSGT00940000159479
Anabantaria	ANCESTRAL SPECIES	19	ENSGT01030000234574.A.b.b	ENSGT01100000263644.a	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00940000178839	ENSGT00940000175719	ENSGT00940000163520.A.a.a.b.d.b.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940	ENSGT00510000050937
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563.b	ENSGT01030000234574.A.b.b	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000165823.c	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000160459	ENSGT00650000094770	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000159479	ENSGT00940000160940	ENSGT00510000050937
Climbing perch	MODERN SPECIES	9	tox4b (ENSATEG00000012549)	SLC12A6 (ENSATEG00000012570)	nop10 (ENSATEG00000012665)	lpcat4 (ENSATEG00000012675)	emc4 (ENSATEG00000012684)	ENSATEG00000012694	ENSATEG00000012708	ENSATEG00000012725	ENSATEG00000012736	ENSATEG00000012743	ENSATEG00000012786	ENSATEG00000012979	ENSATEG00000012997	ENSATEG00000013009	ENSATEG00000026320	vbp1 (ENSATEG00000027836) #22	ENSATEG00000013086 #23	zgc:162171 (ENSATEG00000013106)	ENSATEG00000013125 #21	zgc:92429 (ENSATEG00000013203)	ENSATEG00000013228	ENSATEG00000013332	zgc:109889 (ENSATEG00000013348)	htr2cl1 (ENSATEG00000013369)	ccnb3 (ENSATEG00000013389)	ENSATEG00000013441	tnfsf10l (ENSATEG00000013463)	ENSATEG00000013503	ENSATEG00000013595	ENSATEG00000013605	ENSATEG00000026841
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000001308	ENSBSLG00000001400	ENSBSLG00000001560	ENSBSLG00000001571	ENSBSLG00000001579	ENSBSLG00000001586	ENSBSLG00000001590	ENSBSLG00000001597	ENSBSLG00000001601	ENSBSLG00000001603	ENSBSLG00000001605	ENSBSLG00000001609	ENSBSLG00000001612	ENSBSLG00000001616	ENSBSLG00000001624	vbp1 (ENSBSLG00000001628) #22	RAB39B (ENSBSLG00000001634) #23	zgc:162171 (ENSBSLG00000001641)	ENSBSLG00000001664 #21	zgc:92429 (ENSBSLG00000001832)	ENSBSLG00000002583	htr2cl1 (ENSBSLG00000003087)	ccnb3 (ENSBSLG00000003095)	tnfsf10l (ENSBSLG00000003111)	CLCN5 (ENSBSLG00000003130)	ENSBSLG00000003674	ENSBSLG00000003717	bmp15 (ENSBSLG00000003728)	leap2 (ENSBSLG00000003738)	ENSBSLG00000004000	hdac8 (ENSBSLG00000004777)
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000011577	ENSMAMG00000011350	nop10 (ENSMAMG00000011331)	ENSMAMG00000025252	ENSMAMG00000011324	ENSMAMG00000011312	ENSMAMG00000011263	ENSMAMG00000011239	ENSMAMG00000011231	ENSMAMG00000011224	ENSMAMG00000011207	ENSMAMG00000011202	ENSMAMG00000028146	ENSMAMG00000011187	ENSMAMG00000011165	vbp1 (ENSMAMG00000011152) #22	ENSMAMG00000026216 #23	zgc:162171 (ENSMAMG00000011125)	ENSMAMG00000011068 #21	ENSMAMG00000027306	zgc:92429 (ENSMAMG00000011061)	ENSMAMG00000011016	ENSMAMG00000011007	zgc:109889 (ENSMAMG00000010924)	htr2cl1 (ENSMAMG00000010903)	ccnb3 (ENSMAMG00000010859)	tnfsf10l (ENSMAMG00000024540)	ENSMAMG00000010792	ENSMAMG00000010774	ENSMAMG00000010757	leap2 (ENSMAMG00000010754)
Carangaria	ANCESTRAL SPECIES	20	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT01040000240385.B.c.a	ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00940000163520.A.a.a.b.d.b.b.h	ENSGT00940000163520.A.a.a.b.d.b.b.g.a	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616	ENSGT00940000159479	ENSGT00940000160940
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00390000012563.a.a	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00940000177380	ENSGT00940000177388	ENSGT00940000165823.c	ENSGT00940000163520.A.a.a.b.d.b.b.h	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT01100000266879	ENSGT00940000163160.b.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616
Seriola	ANCESTRAL SPECIES	24	ENSGT00390000014495	ENSGT00940000154888.b.d	ENSGT00940000160238	ENSGT00390000012563.a.a	ENSGT01030000234574.A.b.b	ENSGT00990000204708	ENSGT00390000006970	ENSGT01100000263644.b	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000161519	ENSGT00940000160206.e	ENSGT00940000164991.a.a	ENSGT01040000240385.B.c.b	ENSGT00940000163520.A.a.a.b.d.b.b.h.b	ENSGT00390000018904 #22	ENSGT00940000158132.m.a #23	ENSGT00940000165121.b	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000159429	ENSGT00940000164406	ENSGT01060000248564.b.a.b.b.b.a	ENSGT00950000182962.a.b.a.c	ENSGT01050000244937.a.b.a.a	ENSGT00940000163852.c.a.a	ENSGT00940000160459	ENSGT01070000253816.a.a.a.d	ENSGT00940000153763.a	ENSGT00940000178616	ENSGT00940000159479	ENSGT00940000160940
Yellowtail amberjack	MODERN SPECIES	2941	emc4 (ENSSLDG00000008570)	ENSSLDG00000008593	ENSSLDG00000008625	ENSSLDG00000008666	ENSSLDG00000008698	ENSSLDG00000008720	ENSSLDG00000008757	ENSSLDG00000008783	ENSSLDG00000008796	ENSSLDG00000008805	ENSSLDG00000008815	ENSSLDG00000008858	ENSSLDG00000008950	ENSSLDG00000008987	ENSSLDG00000009005	vbp1 (ENSSLDG00000009049) #22	RAB39B (ENSSLDG00000009068) #23	zgc:162171 (ENSSLDG00000009086)	ENSSLDG00000009141 #21	zgc:92429 (ENSSLDG00000009291)
Greater amberjack	MODERN SPECIES	126												ENSSDUG00000014009	ENSSDUG00000014028	ENSSDUG00000014037	ENSSDUG00000014054	vbp1 (ENSSDUG00000014065) #22	RAB39B (ENSSDUG00000014091) #23	zgc:162171 (ENSSDUG00000014105)	ENSSDUG00000014133 #21	zgc:92429 (ENSSDUG00000014178)	ENSSDUG00000014267	ENSSDUG00000014359	zgc:109889 (ENSSDUG00000014367)	htr2cl1 (ENSSDUG00000014409)	ENSSDUG00000014421	ENSSDUG00000014429	ccnb3 (ENSSDUG00000014442)	tnfsf10l (ENSSDUG00000014488)	CLCN5 (ENSSDUG00000014512)	ENSSDUG00000014592	ENSSDUG00000014614
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1107												ENSLCAG00010011963	ENSLCAG00010011957	ENSLCAG00010011955	ENSLCAG00010011951	vbp1 (ENSLCAG00010011947) #22
Barramundi perch	MODERN SPECIES	396	ENSLCAG00010004749	ADCY4 (ENSLCAG00010004689)	ENSLCAG00010004677	ENSLCAG00010004670	ENSLCAG00010004666	ENSLCAG00010004662	ENSLCAG00010004661	ENSLCAG00010004657	ENSLCAG00010004654	ENSLCAG00010004653	ENSLCAG00010004650	ENSLCAG00010004649	ENSLCAG00010004646	ENSLCAG00010004643	ENSLCAG00010004640	vbp1 (ENSLCAG00010004636) #22	RAB39B (ENSLCAG00010004635) #23	zgc:162171 (ENSLCAG00010004634)	ENSLCAG00010004611 #21
Pleuronectoidei	ANCESTRAL SPECIES	74											ENSGT00940000159429	ENSGT00950000183068.a.a.a.b #21	ENSGT00940000165121.b	ENSGT00940000158132.m.a #23	ENSGT00940000163520.A.a.a.b.d.b.b.g.b	ENSGT00390000018904 #22	ENSGT00940000165823.c	ENSGT01040000240385.B.c.a	ENSGT01040000240385.B.c.b	ENSGT00940000164991.a.a	ENSGT00940000160206.e	ENSGT00940000161519	ENSGT00940000159445	ENSGT00390000018123.a.b	ENSGT00990000204708	ENSGT01100000263729	ENSGT00390000006970	ENSGT01030000234574.A.b.b	ENSGT00390000012563.b	ENSGT00940000160238	ENSGT00940000154888.b.d
Tongue sole	MODERN SPECIES		ENSCSEG00000018098	ppp1r14bb (ENSCSEG00000018093)	si:ch211-285j22.3 (ENSCSEG00000018086)	brms1 (ENSCSEG00000018079)	tmem179ba (ENSCSEG00000018073)	prox3 (ENSCSEG00000018067)	snx15 (ENSCSEG00000018054)	slc3a2a (ENSCSEG00000018043)	ENSCSEG00000018030	ENSCSEG00000018019	pcxb (ENSCSEG00000017955)	zgc:92429 (ENSCSEG00000017919)	ENSCSEG00000017883 #21	zgc:162171 (ENSCSEG00000017867)	RAB39B (ENSCSEG00000017861) #23	vbp1 (ENSCSEG00000017854) #22	ENSCSEG00000017849	ENSCSEG00000017843	ENSCSEG00000017833	ENSCSEG00000017820	ENSCSEG00000017755	ENSCSEG00000017737	ADCY4 (ENSCSEG00000017712)	ENSCSEG00000017652	ENSCSEG00000017637	emc4 (ENSCSEG00000017628)	lpcat4 (ENSCSEG00000017594)	nop10 (ENSCSEG00000017586)	ENSCSEG00000017582	SLC12A6 (ENSCSEG00000017498)	tox4b (ENSCSEG00000017468)
Turbot	MODERN SPECIES	11	ENSSMAG00000017819	ENSSMAG00000017995	ENSSMAG00000018088	ENSSMAG00000018195	ENSSMAG00000018222	ENSSMAG00000018237	ENSSMAG00000018246	ENSSMAG00000018260	ENSSMAG00000015484	ENSSMAG00000015460	zgc:92429 (ENSSMAG00000015434)	ENSSMAG00000015096 #21	zgc:162171 (ENSSMAG00000024461)	ENSSMAG00000029055 #23	ENSSMAG00000035714	ENSSMAG00000034907 #22	ENSSMAG00000017937	ENSSMAG00000033876	ENSSMAG00000033650	ENSSMAG00000013566	ENSSMAG00000013585	ENSSMAG00000013592	ENSSMAG00000013633	ENSSMAG00000013665	ENSSMAG00000013777	ENSSMAG00000013792	ENSSMAG00000035304	ENSSMAG00000032650	slc12a10.3 (ENSSMAG00000013809)	ENSSMAG00000013561	ENSSMAG00000015750
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005016220	ENSMMDG00005016221	ENSMMDG00005016224	ENSMMDG00005016226	ENSMMDG00005016228	ENSMMDG00005016233	ENSMMDG00005016236	ENSMMDG00005016238	ENSMMDG00005016240	ENSMMDG00005016242	ENSMMDG00005016246	ENSMMDG00005001520	ENSMMDG00005001573	ENSMMDG00005001936	ENSMMDG00005001939	vbp1 (ENSMMDG00005001943) #22	RAB39B (ENSMMDG00005001947) #23	zgc:162171 (ENSMMDG00005001950)	ENSMMDG00005001956 #21	zgc:92429 (ENSMMDG00005001967)	ENSMMDG00005002007	ENSMMDG00005002017	ENSMMDG00005002026	zgc:109889 (ENSMMDG00005002029)	htr2cl1 (ENSMMDG00005002037)	ENSMMDG00005002086	ccnb3 (ENSMMDG00005002089)	tnfsf10l (ENSMMDG00005002092)	CLCN5 (ENSMMDG00005002238)	ENSMMDG00005011054	ENSMMDG00005011055
Cod	MODERN SPECIES	8	ENSGMOG00000033571	lpcat4 (ENSGMOG00000004565)	ENSGMOG00000025081	emc4 (ENSGMOG00000004554)	ENSGMOG00000024744	ENSGMOG00000004421	ENSGMOG00000032743	ENSGMOG00000017572	ENSGMOG00000029798	ENSGMOG00000036768	ENSGMOG00000024226	ENSGMOG00000033065	ENSGMOG00000008447	ENSGMOG00000034541	ENSGMOG00000008448	vbp1 (ENSGMOG00000008449) #22	ENSGMOG00000008450 #23	zgc:162171 (ENSGMOG00000015340)	ENSGMOG00000027328 #21	zgc:92429 (ENSGMOG00000015367)	ENSGMOG00000030446	ENSGMOG00000028135	zgc:109889 (ENSGMOG00000027049)	htr2cl1 (ENSGMOG00000032489)	ENSGMOG00000034325	ccnb3 (ENSGMOG00000028821)	tnfsf10l (ENSGMOG00000035908)	ENSGMOG00000013464	ENSGMOG00000030791	ENSGMOG00000034838	ENSGMOG00000023189
Spotted gar	MODERN SPECIES	673	prps1a (ENSLOCG00000014886)	zgc:66447 (ENSLOCG00000014887)	znf711 (ENSLOCG00000014891)	ENSLOCG00000014894	ENSLOCG00000014895	zgc:92907 (ENSLOCG00000014897)	ENSLOCG00000014901	CXorf65 (ENSLOCG00000014906)	ENSLOCG00000014909	ENSLOCG00000014911	FOXO4 (ENSLOCG00000014915)	snx12 (ENSLOCG00000014918)	ENSLOCG00000014919	slc7a3a (ENSLOCG00000014920)	ENSLOCG00000017484	vbp1 (ENSLOCG00000014923) #22	rab39bb (ENSLOCG00000014927) #23	zgc:162171 (ENSLOCG00000014930)	ENSLOCG00000014931 #21	zgc:92429 (ENSLOCG00000014938)	siah2l (ENSLOCG00000014942)	ENSLOCG00000014943	GPR119 (ENSLOCG00000017485)	slc25a14 (ENSLOCG00000014944)	ENSLOCG00000014948	pou4f4 (ENSLOCG00000014949)	klf5l (ENSLOCG00000014951)	RIPPLY1 (ENSLOCG00000014954)	klf8 (ENSLOCG00000014956)	rbm41 (ENSLOCG00000014958)	zgc:152774 (ENSLOCG00000014959)
Reedfish	MODERN SPECIES	3	gpc4 (ENSECRG00000012276)	hs6st2 (ENSECRG00000012263)	mbnl3 (ENSECRG00000012236)	ENSECRG00000012201	rap2c (ENSECRG00000012181)	ENSECRG00000012165	ENSECRG00000012129	zgc:92907 (ENSECRG00000012110)	il2rgb (ENSECRG00000012091)	ENSECRG00000012076	FOXO4 (ENSECRG00000012058)	snx12 (ENSECRG00000012044)	SLC7A3 (ENSECRG00000012024)	ubl3b (ENSECRG00000012000)	ENSECRG00000011978	vbp1 (ENSECRG00000011967) #22	rab39bb (ENSECRG00000011956) #23	zgc:162171 (ENSECRG00000011941)	ENSECRG00000011930	ENSECRG00000011917	ENSECRG00000011898	med12 (ENSECRG00000011825)	ENSECRG00000011696	ENSECRG00000011645	ENSECRG00000011635	SLITRK4 (ENSECRG00000011626)	ENSECRG00000011617	ENSECRG00000011605	ENSECRG00000011596	SLITRK2 (ENSECRG00000011585)	slc6a14 (ENSECRG00000011571)