Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470 #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Glires	ANCESTRAL SPECIES		ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00940000163422	ENSGT00390000016470 #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Rodentia	ANCESTRAL SPECIES		ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00940000163422	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00900000143258	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00940000163422	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37
Sciuridae	ANCESTRAL SPECIES		ENSGT01050000245064	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Marmotini	ANCESTRAL SPECIES	34	ENSGT01100000264964	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00390000016470.n.u.a #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Alpin marmot	MODERN SPECIES	29	PRRC2C (ENSMMMG00000018040) #7	ENSMMMG00000018036 #8	MYOC (ENSMMMG00000018016) #9	VAMP4 (ENSMMMG00000017953) #10	METTL13 (ENSMMMG00000017943) #11	DNM3 (ENSMMMG00000017811) #12	PIGC (ENSMMMG00000017797) #13	SUCO (ENSMMMG00000017766) #14	FASLG (ENSMMMG00000017759) #15	TNFSF18 (ENSMMMG00000017735) #16	TNFSF4 (ENSMMMG00000017713) #17	PRDX6 (ENSMMMG00000017711) #18	SLC9C2 (ENSMMMG00000017686) #19	TEX50 (ENSMMMG00000017676) #20	ANKRD45 (ENSMMMG00000017671) #21	KLHL20 (ENSMMMG00000017654) #22	CENPL (ENSMMMG00000017640) #23	ENSMMMG00000017635 #24	ZBTB37 (ENSMMMG00000017588) #25	SERPINC1 (ENSMMMG00000017585) #26	RC3H1 (ENSMMMG00000017561) #27	RABGAP1L (ENSMMMG00000017520) #28	ENSMMMG00000017512 #29	MRPS14 (ENSMMMG00000017506) #30	TNN (ENSMMMG00000017452) #31	KIAA0040 (ENSMMMG00000017447) #32	ENSMMMG00000017442 #33	TNR (ENSMMMG00000017403) #34	COP1 (ENSMMMG00000017367) #35	ENSMMMG00000017355 #36	PAPPA2 (ENSMMMG00000017335) #37
Marmotini_b	ANCESTRAL SPECIES	28	ENSGT01100000264964	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00390000016470.n.u.a.a #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A	ENSGT00940000160314
Arctic ground squirrel	MODERN SPECIES	59	METTL13 (ENSUPAG00010001200) #11	DNM3 (ENSUPAG00010001218) #12	ENSUPAG00010001407	C1orf105 (ENSUPAG00010001419)	PIGC (ENSUPAG00010001429) #13	SUCO (ENSUPAG00010001439) #14	FASLG (ENSUPAG00010001504) #15	ENSUPAG00010001518	ENSUPAG00010001537	TNFSF18 (ENSUPAG00010001546) #16	TNFSF4 (ENSUPAG00010001562) #17	PRDX6 (ENSUPAG00010001574) #18	SLC9C2 (ENSUPAG00010001598) #19	ANKRD45 (ENSUPAG00010001652) #21	TEX50 (ENSUPAG00010001667) #20	KLHL20 (ENSUPAG00010001676) #22	CENPL (ENSUPAG00010001726) #23	DARS2 (ENSUPAG00010001761) #24	ZBTB37 (ENSUPAG00010001937) #25	SERPINC1 (ENSUPAG00010001955) #26	RC3H1 (ENSUPAG00010001972) #27	RABGAP1L (ENSUPAG00010002047) #28	CACYBP (ENSUPAG00010002157) #29	MRPS14 (ENSUPAG00010002176) #30	TNN (ENSUPAG00010002190) #31	KIAA0040 (ENSUPAG00010002263) #32	TNR (ENSUPAG00010002271) #34	COP1 (ENSUPAG00010002315) #35	PAPPA2 (ENSUPAG00010002380) #37	ASTN1 (ENSUPAG00010002420)	BRINP2 (ENSUPAG00010002510)
Squirrel	MODERN SPECIES	81	ENSSTOG00000028302	ENSSTOG00000021033	PRRC2C (ENSSTOG00000003769) #7	ENSSTOG00000034019	MYOC (ENSSTOG00000003836) #9	VAMP4 (ENSSTOG00000003843) #10	METTL13 (ENSSTOG00000003852) #11	DNM3 (ENSSTOG00000007645) #12	PIGC (ENSSTOG00000027996) #13	ENSSTOG00000029696	SUCO (ENSSTOG00000007710) #14	ENSSTOG00000007743	TNFSF18 (ENSSTOG00000010210) #16	PRDX6 (ENSSTOG00000015224) #18	ANKRD45 (ENSSTOG00000015243) #21	KLHL20 (ENSSTOG00000015246) #22	CENPL (ENSSTOG00000028774) #23	DARS2 (ENSSTOG00000015250) #24	ZBTB37 (ENSSTOG00000022488) #25	SERPINC1 (ENSSTOG00000016029) #26	RC3H1 (ENSSTOG00000016033) #27	ENSSTOG00000029661	RABGAP1L (ENSSTOG00000002212) #28	ENSSTOG00000010859 #29	MRPS14 (ENSSTOG00000025353) #30	TNN (ENSSTOG00000010862) #31	TNR (ENSSTOG00000011036) #34	COP1 (ENSSTOG00000008436) #35	PAPPA2 (ENSSTOG00000011863) #37	ASTN1 (ENSSTOG00000011879)	BRINP2 (ENSSTOG00000011896)
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005022026 #10	METTL13 (ENSSVLG00005021966) #11	DNM3 (ENSSVLG00005021575) #12	ENSSVLG00005021524 #13	C1orf105 (ENSSVLG00005021465)	SUCO (ENSSVLG00005021419) #14	FASLG (ENSSVLG00005021366) #15	ENSSVLG00005021357	ENSSVLG00005021325 #16	ENSSVLG00005021284 #16	TNFSF4 (ENSSVLG00005021241) #17	PRDX6 (ENSSVLG00005021201) #18	SLC9C2 (ENSSVLG00005020979) #19	TEX50 (ENSSVLG00005020930) #20	ANKRD45 (ENSSVLG00005020863) #21	KLHL20 (ENSSVLG00005020822) #22	CENPL (ENSSVLG00005020781) #23	DARS2 (ENSSVLG00005020666) #24	ENSSVLG00005020562	SERPINC1 (ENSSVLG00005020496) #26	ENSSVLG00005020459 #27	ENSSVLG00005020417	ENSSVLG00005020375	RABGAP1L (ENSSVLG00005020022) #28	ENSSVLG00005019799 #29	MRPS14 (ENSSVLG00005019743) #30	EXOSC5 (ENSSVLG00005019702)	TNN (ENSSVLG00005019600) #31	KIAA0040 (ENSSVLG00005019376) #32	ENSSVLG00005019301 #33	TNR (ENSSVLG00005019207) #34
Hystricomorpha	ANCESTRAL SPECIES	29	ENSGT00950000183161.b #7	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000015231	ENSGT00390000005496 #13	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00940000163422	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000160256.b	ENSGT00950000183161.b #7	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000015231	ENSGT00390000005496 #13	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Guinea pig	MODERN SPECIES	12	FMO2 (ENSCPOG00000013986)	FMO1 (ENSCPOG00000013990)	FMO4 (ENSCPOG00000013998)	PRRC2C (ENSCPOG00000001917) #7	MYOC (ENSCPOG00000030652) #9	ENSCPOG00000032516 #10	METTL13 (ENSCPOG00000004377) #11	DNM3 (ENSCPOG00000000836) #12	PIGC (ENSCPOG00000000840) #13	SUCO (ENSCPOG00000008308) #14	ENSCPOG00000035809	TNFSF18 (ENSCPOG00000033073) #16	TNFSF4 (ENSCPOG00000032219) #17	PRDX6 (ENSCPOG00000036256) #18	ENSCPOG00000010568	KLHL20 (ENSCPOG00000004644) #22	CENPL (ENSCPOG00000023610) #23	DARS2 (ENSCPOG00000010575) #24	ZBTB37 (ENSCPOG00000004346) #25	ENSCPOG00000035770 #26	ENSCPOG00000000420 #26	RC3H1 (ENSCPOG00000004349) #27	GPR52 (ENSCPOG00000009048)	RABGAP1L (ENSCPOG00000014829) #28	ENSCPOG00000038347 #29	MRPS14 (ENSCPOG00000033627) #30	TNN (ENSCPOG00000012246) #31	KIAA0040 (ENSCPOG00000038996) #32	TNR (ENSCPOG00000007606) #34	COP1 (ENSCPOG00000010759) #35	PAPPA2 (ENSCPOG00000003637) #37
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000160945	ENSGT00940000160256.b	ENSGT00950000183161.b #7	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000015231	ENSGT00390000005496 #13	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00940000163422	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A	ENSGT00940000160314
Degu	MODERN SPECIES	58	ENSODEG00000012929 #7	ENSODEG00000012798 #7	MYOC (ENSODEG00000013127) #9	ENSODEG00000012825 #10	METTL13 (ENSODEG00000013057) #11	DNM3 (ENSODEG00000012288) #12	PIGC (ENSODEG00000020006) #13	SUCO (ENSODEG00000012824) #14	FASLG (ENSODEG00000013657) #15	ENSODEG00000012275	ENSODEG00000011983	ENSODEG00000011586	TNFSF4 (ENSODEG00000013566) #17	ENSODEG00000012361 #18	ANKRD45 (ENSODEG00000015522) #21	KLHL20 (ENSODEG00000011896) #22	CENPL (ENSODEG00000012023) #23	DARS2 (ENSODEG00000012436) #24	ZBTB37 (ENSODEG00000012780) #25	ENSODEG00000011939	RC3H1 (ENSODEG00000014185) #27	ENSODEG00000013399	ENSODEG00000012722 #28	GPR52 (ENSODEG00000020014)	ENSODEG00000019890	ENSODEG00000012029	ENSODEG00000013023 #28	ENSODEG00000013050 #29	MRPS14 (ENSODEG00000011705) #30	TNN (ENSODEG00000011528) #31	TNR (ENSODEG00000010742) #34
Long-tailed chinchilla	MODERN SPECIES	113	FMO4 (ENSCLAG00000013722)	PRRC2C (ENSCLAG00000008666) #7	ENSCLAG00000014209	MYOC (ENSCLAG00000011961) #9	VAMP4 (ENSCLAG00000008855) #10	METTL13 (ENSCLAG00000014345) #11	DNM3 (ENSCLAG00000014682) #12	C1orf105 (ENSCLAG00000011095)	PIGC (ENSCLAG00000007794) #13	SUCO (ENSCLAG00000010802) #14	FASLG (ENSCLAG00000011225) #15	TNFSF4 (ENSCLAG00000010664) #17	PRDX6 (ENSCLAG00000011339) #18	SLC9C2 (ENSCLAG00000014938) #19	ANKRD45 (ENSCLAG00000012745) #21	KLHL20 (ENSCLAG00000009509) #22	CENPL (ENSCLAG00000011751) #23	DARS2 (ENSCLAG00000008286) #24	ZBTB37 (ENSCLAG00000008175) #25	SERPINC1 (ENSCLAG00000011793) #26	RC3H1 (ENSCLAG00000011267) #27	RABGAP1L (ENSCLAG00000010188) #28	GPR52 (ENSCLAG00000011501)	ENSCLAG00000015327 #29	MRPS14 (ENSCLAG00000013217) #30	TNN (ENSCLAG00000012508) #31	TNR (ENSCLAG00000015252) #34	COP1 (ENSCLAG00000014979) #35	PAPPA2 (ENSCLAG00000014894) #37	ASTN1 (ENSCLAG00000011685)	BRINP2 (ENSCLAG00000011561)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	16	DNM3 (ENSHGLG00000005733) #12	ENSHGLG00000041130	PIGC (ENSHGLG00000003872) #13	ENSHGLG00000008712	SUCO (ENSHGLG00000018923) #14	ENSHGLG00000011544 #15	ENSHGLG00000049185	ENSHGLG00000042599	ENSHGLG00000038556 #16	ENSHGLG00000036984 #17	ENSHGLG00000007539 #18	SLC9C2 (ENSHGLG00000005341) #19	ENSHGLG00000034914	ANKRD45 (ENSHGLG00000044904) #21	ENSHGLG00000034251 #20	KLHL20 (ENSHGLG00000010402) #22	CENPL (ENSHGLG00000007718) #23	DARS2 (ENSHGLG00000006680) #24	ZBTB37 (ENSHGLG00000009397) #25	SERPINC1 (ENSHGLG00000007370) #26	ENSHGLG00000010929 #27	ENSHGLG00000049347	ENSHGLG00000033461	ENSHGLG00000005120 #28	ENSHGLG00000020503	ENSHGLG00000004714	ENSHGLG00000020421	GPR52 (ENSHGLG00000042550)	ENSHGLG00000049562	ENSHGLG00000035326	ENSHGLG00000019690
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000005686	ENSHGLG00000041185	CDK1 (ENSHGLG00000032747)	RHOBTB1 (ENSHGLG00000003590)	TMEM26 (ENSHGLG00000034884)	CABCOCO1 (ENSHGLG00000006002)	ENSHGLG00000041127	ARID5B (ENSHGLG00000004939)	ENSHGLG00000003838	ENSHGLG00000000372	ENSHGLG00000003191	ENSHGLG00000017102	ENSHGLG00000017121	ENSHGLG00000049656	ENSHGLG00000037220	ENSHGLG00000016644 #22	ENSHGLG00000019280	ENSHGLG00000016681	PBLD (ENSHGLG00000011042)	HNRNPH3 (ENSHGLG00000011321)	RUFY2 (ENSHGLG00000011743)	DNA2 (ENSHGLG00000012094)	SLC25A16 (ENSHGLG00000034726)	ENSHGLG00000036289	CCAR1 (ENSHGLG00000012835)	ENSHGLG00000037043	STOX1 (ENSHGLG00000013313)	DDX50 (ENSHGLG00000013466)	DDX21 (ENSHGLG00000038462)	ENSHGLG00000033477	ENSHGLG00000043847
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37
Muroidea	ANCESTRAL SPECIES	9	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000183161.b #7	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A	ENSGT00940000160314
Chinese hamster chok1gshd	MODERN SPECIES	2	Myocos (ENSCGRG00001024195)	Myoc (ENSCGRG00001024390) #9	ENSCGRG00001021945 #10	Mettl13 (ENSCGRG00001014417) #11	Dnm3 (ENSCGRG00001006319) #12	ENSCGRG00001016808	ENSCGRG00001019129	Pigc (ENSCGRG00001004968) #13	ENSCGRG00001012607	Suco (ENSCGRG00001018892) #14	Fasl (ENSCGRG00001018720) #15	Tnfsf18 (ENSCGRG00001013049) #16	Tnfsf4 (ENSCGRG00001013801) #17	ENSCGRG00001000609 #18	Ankrd45 (ENSCGRG00001016754) #21	Klhl20 (ENSCGRG00001023082) #22	Cenpl (ENSCGRG00001017145) #23	Dars2 (ENSCGRG00001021217) #24	Zbtb37 (ENSCGRG00001010444) #25	Serpinc1 (ENSCGRG00001013087) #26	Rc3h1 (ENSCGRG00001020812) #27	ENSCGRG00001012330	Rabgap1l (ENSCGRG00001011111) #28	ENSCGRG00001002480	Cacybp (ENSCGRG00001020422) #29	Mrps14 (ENSCGRG00001024975) #30	Tnn (ENSCGRG00001020838) #31	4930523C07Rik (ENSCGRG00001004457) #32	Tnr (ENSCGRG00001010577) #34	Cop1 (ENSCGRG00001018835) #35	Pappa2 (ENSCGRG00001021710) #37
Golden Hamster	MODERN SPECIES	644	ENSMAUG00000009383	Myoc (ENSMAUG00000017072) #9	Vamp4 (ENSMAUG00000021533) #10	Mettl13 (ENSMAUG00000021447) #11	Dnm3 (ENSMAUG00000015161) #12	Pigc (ENSMAUG00000020179) #13	4930558K02Rik (ENSMAUG00000022155)	Suco (ENSMAUG00000007691) #14	Fasl (ENSMAUG00000008049) #15	Tnfsf18 (ENSMAUG00000011424) #16	Tnfsf4 (ENSMAUG00000012037) #17	ENSMAUG00000012265 #18	Tex50 (ENSMAUG00000007631) #20	Ankrd45 (ENSMAUG00000001353) #21	ENSMAUG00000000878	Klhl20 (ENSMAUG00000020502) #22	Dars2 (ENSMAUG00000002392) #24	ENSMAUG00000018191	Serpinc1 (ENSMAUG00000019496) #26	Rc3h1 (ENSMAUG00000020864) #27	ENSMAUG00000009533	ENSMAUG00000021252 #28	ENSMAUG00000015678 #28	Mrps14 (ENSMAUG00000018062) #30	Tnn (ENSMAUG00000014939) #31	4930523C07Rik (ENSMAUG00000016508) #32	Tnr (ENSMAUG00000000637) #34	Cop1 (ENSMAUG00000001871) #35	Pappa2 (ENSMAUG00000011215) #37	Astn1 (ENSMAUG00000021977)	Brinp2 (ENSMAUG00000016427)
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Prairie vole	MODERN SPECIES	80	Myoc (ENSMOCG00000011618) #9	Vamp4 (ENSMOCG00000015230) #10	Mettl13 (ENSMOCG00000011261) #11	ENSMOCG00000008075	ENSMOCG00000008821	Dnm3 (ENSMOCG00000020210) #12	Pigc (ENSMOCG00000003546) #13	4930558K02Rik (ENSMOCG00000000623)	Suco (ENSMOCG00000005241) #14	Fasl (ENSMOCG00000002112) #15	ENSMOCG00000022063	Tnfsf18 (ENSMOCG00000021434) #16	Tnfsf4 (ENSMOCG00000016434) #17	ENSMOCG00000011324 #18	Ankrd45 (ENSMOCG00000021366) #21	ENSMOCG00000005640 #22	Cenpl (ENSMOCG00000015725) #23	Dars2 (ENSMOCG00000020112) #24	Zbtb37 (ENSMOCG00000005828) #25	Serpinc1 (ENSMOCG00000019599) #26	ENSMOCG00000014126	Rc3h1 (ENSMOCG00000016587) #27	ENSMOCG00000009195	Rabgap1l (ENSMOCG00000007533) #28	Gpr52 (ENSMOCG00000007360)	ENSMOCG00000001406 #28	Cacybp (ENSMOCG00000022835) #29	Mrps14 (ENSMOCG00000019730) #30	Tnn (ENSMOCG00000019938) #31	Tnr (ENSMOCG00000005133) #34	Cop1 (ENSMOCG00000016946) #35
Northern American deer mouse	MODERN SPECIES	2	Vamp4 (ENSPEMG00000019730) #10	Mettl13 (ENSPEMG00000019591) #11	Dnm3 (ENSPEMG00000019627) #12	Pigc (ENSPEMG00000019430) #13	4930558K02Rik (ENSPEMG00000025431)	Suco (ENSPEMG00000018224) #14	Fasl (ENSPEMG00000018529) #15	ENSPEMG00000000037	Tnfsf18 (ENSPEMG00000000142) #16	Tnfsf4 (ENSPEMG00000000194) #17	ENSPEMG00000025021	ENSPEMG00000000906 #18	ENSPEMG00000027768 #19	Tex50 (ENSPEMG00000027839) #20	Ankrd45 (ENSPEMG00000001617) #21	Klhl20 (ENSPEMG00000004233) #22	Cenpl (ENSPEMG00000006763) #23	Dars2 (ENSPEMG00000009176) #24	Zbtb37 (ENSPEMG00000010456) #25	Serpinc1 (ENSPEMG00000011148) #26	Rc3h1 (ENSPEMG00000011966) #27	ENSPEMG00000029500	Rabgap1l (ENSPEMG00000013743) #28	ENSPEMG00000026549	Mrps14 (ENSPEMG00000012879) #30	Tnn (ENSPEMG00000011401) #31	4930523C07Rik (ENSPEMG00000030790) #32	Tnr (ENSPEMG00000012890) #34	Cop1 (ENSPEMG00000010128) #35	Pappa2 (ENSPEMG00000019822) #37	Astn1 (ENSPEMG00000019936)
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00900000143258	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794 #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.e.a ##35	ENSGT00940000158543 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794.db #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.e.a ##35	ENSGT00940000158543 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794.db #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n.c #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.e.a.a ##35	ENSGT00940000158543 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794.db #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470.n.c #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.e.a.a ##35	ENSGT00940000158543 #37
Mouse	MODERN SPECIES		Prrc2c (ENSMUSG00000040225) #7	Myocos (ENSMUSG00000091060)	Myoc (ENSMUSG00000026697) #9	Vamp4 (ENSMUSG00000026696) #10	Mettl13 (ENSMUSG00000026694) #11	Dnm3 (ENSMUSG00000040265) #12	Pigc (ENSMUSG00000026698) #13	4930558K02Rik (ENSMUSG00000086277)	Suco (ENSMUSG00000040297) #14	Fasl (ENSMUSG00000000817) #15	Tnfsf18 (ENSMUSG00000066755) #16	Tnfsf4 (ENSMUSG00000026700) #17	Prdx6 (ENSMUSG00000026701) #18	Tex50 (ENSMUSG00000049160) #20	Ankrd45 (ENSMUSG00000044835) #21	Klhl20 (ENSMUSG00000026705) #22	Cenpl (ENSMUSG00000026708) #23	Dars2 (ENSMUSG00000026709) #24	Zbtb37 (ENSMUSG00000043467) #25	Serpinc1 (ENSMUSG00000026715) #26	Rc3h1 (ENSMUSG00000040423) #27	Gpr52 (ENSMUSG00000118401)	Rabgap1l (ENSMUSG00000026721) #28	Cacybp (ENSMUSG00000014226) #29	Mrps14 (ENSMUSG00000058267) #30	Tnn (ENSMUSG00000026725) #31	4930523C07Rik (ENSMUSG00000090394) #32	Tnr (ENSMUSG00000015829) #34	Cop1 (ENSMUSG00000040782) ##35	Pappa2 (ENSMUSG00000073530) #37	Astn1 (ENSMUSG00000026587)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00860000135681	ENSGT00940000158561 #9	ENSGT00940000155005 #10	ENSGT00510000047399 #11	ENSGT00940000158056 #12	ENSGT00390000005496 #13	ENSGT00390000015231	ENSGT00390000013502.b #14	ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00550000074794.db #18	ENSGT00940000162785 #19	ENSGT00520000059630 #20	ENSGT00390000008829 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611 #28	ENSGT00390000016470.n.c #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00620000089392 #32	ENSGT00940000157761 #34	ENSGT00920000149161.e.a.a ##35	ENSGT00390000003140.A	ENSGT00940000160314
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3079				ENSMSIG00000021345	Dnm3 (ENSMSIG00000021050) #12	Pigc (ENSMSIG00000021029) #13	ENSMSIG00000020954	Suco (ENSMSIG00000020741) #14	Fasl (ENSMSIG00000020712) #15	Tnfsf18 (ENSMSIG00000020687) #16	Tnfsf4 (ENSMSIG00000020669) #17	Prdx6 (ENSMSIG00000020620) #18	ENSMSIG00000020579 #19	Tex50 (ENSMSIG00000020563) #20	Ankrd45 (ENSMSIG00000020519) #21	ENSMSIG00000020512 #22	Cenpl (ENSMSIG00000020490) #23	Dars2 (ENSMSIG00000020458) #24	Zbtb37 (ENSMSIG00000020393) #25	Serpinc1 (ENSMSIG00000020371) #26	Rc3h1 (ENSMSIG00000020291) #27	ENSMSIG00000020284	ENSMSIG00000019952 #28	Cacybp (ENSMSIG00000019929) #29
Steppe mouse	MODERN SPECIES	2677														ENSMSIG00000012361	Tpk1 (ENSMSIG00000012370)	ENSMSIG00000012412 #22	Nobox (ENSMSIG00000012416)	Arhgef5 (ENSMSIG00000012437)	Or2a20 (ENSMSIG00000012455)	Or2a51 (ENSMSIG00000012459)	Or2a7 (ENSMSIG00000012473)	Or2a52 (ENSMSIG00000012477)	Or2a14 (ENSMSIG00000012483)	Or2a54 (ENSMSIG00000012495)	ENSMSIG00000012503	ENSMSIG00000012508
spretus	MODERN SPECIES		MGP_SPRETEiJ_G0015583	Prrc2c (MGP_SPRETEiJ_G0015582) #7	Myocos (MGP_SPRETEiJ_G0015581)	Myoc (MGP_SPRETEiJ_G0015580) #9	Vamp4 (MGP_SPRETEiJ_G0015579) #10	Mettl13 (MGP_SPRETEiJ_G0015578) #11	Dnm3 (MGP_SPRETEiJ_G0015577) #12	Pigc (MGP_SPRETEiJ_G0015576) #13	4930558K02Rik (MGP_SPRETEiJ_G0015575)	Suco (MGP_SPRETEiJ_G0015574) #14	Fasl (MGP_SPRETEiJ_G0015573) #15	Tnfsf18 (MGP_SPRETEiJ_G0015572) #16	Tnfsf4 (MGP_SPRETEiJ_G0015571) #17	Prdx6 (MGP_SPRETEiJ_G0015570) #18	Ankrd45 (MGP_SPRETEiJ_G0015569) #21	Klhl20 (MGP_SPRETEiJ_G0015568) #22	Cenpl (MGP_SPRETEiJ_G0015567) #23	Dars2 (MGP_SPRETEiJ_G0015566) #24	Zbtb37 (MGP_SPRETEiJ_G0015565) #25	Serpinc1 (MGP_SPRETEiJ_G0015564) #26	Rc3h1 (MGP_SPRETEiJ_G0015563) #27	Rabgap1l (MGP_SPRETEiJ_G0015562) #28	Cacybp (MGP_SPRETEiJ_G0015561) #29	Mrps14 (MGP_SPRETEiJ_G0015560) #30	Tnn (MGP_SPRETEiJ_G0015559) #31	4930523C07Rik (MGP_SPRETEiJ_G0015558) #32	Tnr (MGP_SPRETEiJ_G0015557) #34	Cop1 (MGP_SPRETEiJ_G0015556) ##35	Astn1 (MGP_SPRETEiJ_G0015554)	Brinp2 (MGP_SPRETEiJ_G0015553)	Sec16b (MGP_SPRETEiJ_G0015552)
Ryukyu mouse	MODERN SPECIES		Fmo4 (MGP_CAROLIEiJ_G0014776)	Prrc2c (MGP_CAROLIEiJ_G0014775) #7	Myocos (MGP_CAROLIEiJ_G0014774)	Myoc (MGP_CAROLIEiJ_G0014773) #9	Vamp4 (MGP_CAROLIEiJ_G0014772) #10	Mettl13 (MGP_CAROLIEiJ_G0014771) #11	Dnm3 (MGP_CAROLIEiJ_G0014770) #12	Pigc (MGP_CAROLIEiJ_G0014769) #13	4930558K02Rik (MGP_CAROLIEiJ_G0014768)	Suco (MGP_CAROLIEiJ_G0014767) #14	Fasl (MGP_CAROLIEiJ_G0014766) #15	Tnfsf18 (MGP_CAROLIEiJ_G0014765) #16	Tnfsf4 (MGP_CAROLIEiJ_G0014764) #17	Prdx6 (MGP_CAROLIEiJ_G0014763) #18	Ankrd45 (MGP_CAROLIEiJ_G0014762) #21	Klhl20 (MGP_CAROLIEiJ_G0014761) #22	Cenpl (MGP_CAROLIEiJ_G0014760) #23	Dars2 (MGP_CAROLIEiJ_G0014759) #24	Zbtb37 (MGP_CAROLIEiJ_G0014758) #25	Serpinc1 (MGP_CAROLIEiJ_G0014757) #26	Rc3h1 (MGP_CAROLIEiJ_G0014756) #27	Rabgap1l (MGP_CAROLIEiJ_G0014755) #28	Cacybp (MGP_CAROLIEiJ_G0014754) #29	Mrps14 (MGP_CAROLIEiJ_G0014753) #30	Tnn (MGP_CAROLIEiJ_G0014752) #31	4930523C07Rik (MGP_CAROLIEiJ_G0014751) #32	Tnr (MGP_CAROLIEiJ_G0014750) #34	Cop1 (MGP_CAROLIEiJ_G0014749) ##35	Pappa2 (MGP_CAROLIEiJ_G0014748) #37	Astn1 (MGP_CAROLIEiJ_G0014747)	Brinp2 (MGP_CAROLIEiJ_G0014746)
Shrew mouse	MODERN SPECIES	18	Prrc2c (MGP_PahariEiJ_G0028012) #7	Myocos (MGP_PahariEiJ_G0028011)	Myoc (MGP_PahariEiJ_G0028010) #9	Vamp4 (MGP_PahariEiJ_G0028009) #10	Mettl13 (MGP_PahariEiJ_G0028008) #11	Dnm3 (MGP_PahariEiJ_G0028007) #12	Pigc (MGP_PahariEiJ_G0028006) #13	4930558K02Rik (MGP_PahariEiJ_G0028005)	Suco (MGP_PahariEiJ_G0028004) #14	Fasl (MGP_PahariEiJ_G0028003) #15	Tnfsf18 (MGP_PahariEiJ_G0028002) #16	Tnfsf4 (MGP_PahariEiJ_G0028001) #17	MGP_PahariEiJ_G0028000	Prdx6 (MGP_PahariEiJ_G0027999) #18	MGP_PahariEiJ_G0027998 #21	Klhl20 (MGP_PahariEiJ_G0027997) #22	Cenpl (MGP_PahariEiJ_G0027996) #23	Dars2 (MGP_PahariEiJ_G0027995) #24	Zbtb37 (MGP_PahariEiJ_G0027994) #25	Serpinc1 (MGP_PahariEiJ_G0027993) #26	Rc3h1 (MGP_PahariEiJ_G0027992) #27	Rabgap1l (MGP_PahariEiJ_G0027991) #28	MGP_PahariEiJ_G0027990 ##29	Mrps14 (MGP_PahariEiJ_G0027989) #30	Tnn (MGP_PahariEiJ_G0027988) #31	Tnr (MGP_PahariEiJ_G0027986) #34	Cop1 (MGP_PahariEiJ_G0027985) ##35	Pappa2 (MGP_PahariEiJ_G0027984) #37	Astn1 (MGP_PahariEiJ_G0027983)	Brinp2 (MGP_PahariEiJ_G0027982)	Sec16b (MGP_PahariEiJ_G0027981)
Rat	MODERN SPECIES	4	Mettl13 (ENSRNOG00000003042) #11	AABR07021591.1 (ENSRNOG00000029459)	Dnm3 (ENSRNOG00000026490) #12	RGD1309106 (ENSRNOG00000026523)	Pigc (ENSRNOG00000026497) #13	Suco (ENSRNOG00000026542) #14	Faslg (ENSRNOG00000002978) #15	ENSRNOG00000070334	Tnfsf18 (ENSRNOG00000026607) #16	Tnfsf4 (ENSRNOG00000002968) #17	AABR07021573.2 (ENSRNOG00000026917)	Prdx6 (ENSRNOG00000066585) #18	Slc9c2 (ENSRNOG00000026797) #19	Tex50 (ENSRNOG00000038786) #20	Slc9c2 (ENSRNOG00000002890) #21	Klhl20 (ENSRNOG00000002875) #22	Cenpl (ENSRNOG00000038789) #23	Dars2 (ENSRNOG00000002813) #24	Zbtb37 (ENSRNOG00000026907) #25	Serpinc1 (ENSRNOG00000002783) #26	Rc3h1 (ENSRNOG00000002750) #27	Gpr52 (ENSRNOG00000055673)	AABR07007905.2 (ENSRNOG00000053229)	Rabgap1l (ENSRNOG00000002736) #28	Cacybp (ENSRNOG00000002572) #29	Mrps14 (ENSRNOG00000002569) #30	Tnn (ENSRNOG00000002548) #31	Kiaa0040 (ENSRNOG00000049537) #32	Tnr (ENSRNOG00000002468) #34	Cop1 (ENSRNOG00000042492) ##35	Pappa2 (ENSRNOG00000042860) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1891																Klhl20 (ENSNGAG00000015797) #22	Cenpl (ENSNGAG00000017679) #23	Dars2 (ENSNGAG00000000825) #24	Zbtb37 (ENSNGAG00000011887) #25	Serpinc1 (ENSNGAG00000017331) #26	Rc3h1 (ENSNGAG00000011135) #27	ENSNGAG00000012137	Rabgap1l (ENSNGAG00000013357) #28	Gpr52 (ENSNGAG00000018099)	ENSNGAG00000017871 #28	ENSNGAG00000020083	ENSNGAG00000000603 #29	Mrps14 (ENSNGAG00000013183) #30	Tnn (ENSNGAG00000018970) #31	Tnr (ENSNGAG00000019874) #34	Cop1 (ENSNGAG00000017396) #35
Lesser Egyptian jerboa	MODERN SPECIES	68	ENSJJAG00000020009	ENSJJAG00000021042 #7	ENSJJAG00000012503 #7	ENSJJAG00000012807 #7	ENSJJAG00000000508	Myoc (ENSJJAG00000021766) #9	Vamp4 (ENSJJAG00000011517) #10	Mettl13 (ENSJJAG00000020197) #11	Dnm3 (ENSJJAG00000015123) #12	Pigc (ENSJJAG00000011522) #13	Suco (ENSJJAG00000020836) #14	ENSJJAG00000014761 #15	Tnfsf18 (ENSJJAG00000024372) #16	ENSJJAG00000020424 #18	Ankrd45 (ENSJJAG00000022245) #21	Klhl20 (ENSJJAG00000022994) #22	Cenpl (ENSJJAG00000022879) #23	Dars2 (ENSJJAG00000024152) #24	Zbtb37 (ENSJJAG00000000458) #25	Serpinc1 (ENSJJAG00000014088) #26	Rc3h1 (ENSJJAG00000018915) #27	Rabgap1l (ENSJJAG00000019779) #28	Gpr52 (ENSJJAG00000011780)	ENSJJAG00000011265 #28	ENSJJAG00000012812 #29	Mrps14 (ENSJJAG00000005950) #30	Tnn (ENSJJAG00000015915) #31	Tnr (ENSJJAG00000007027) #34	Cop1 (ENSJJAG00000021784) #35	Pappa2 (ENSJJAG00000018691) #37	Astn1 (ENSJJAG00000016409)
Kangaroo rat	MODERN SPECIES	346	Tex43 (ENSDORG00000027663)	Lmnb1 (ENSDORG00000006632)	Marchf3 (ENSDORG00000006633)	C330018D20Rik (ENSDORG00000009280)	Megf10 (ENSDORG00000015201)	Prrc1 (ENSDORG00000015204)	Ctxn3 (ENSDORG00000029508)	Ccdc192 (ENSDORG00000025240)	Slc12a2 (ENSDORG00000007298)	Fbn2 (ENSDORG00000005003)	Slc27a6 (ENSDORG00000010692)	ENSDORG00000026322	4930438A08Rik (ENSDORG00000025928)	ENSDORG00000004177 #18	ENSDORG00000004183 #21	Klhl20 (ENSDORG00000014072) #22	Cenpl (ENSDORG00000023151) #23	Dars2 (ENSDORG00000014074) #24	Zbtb37 (ENSDORG00000008483) #25	Serpinc1 (ENSDORG00000008479) #26	Rc3h1 (ENSDORG00000004855) #27	Rabgap1l (ENSDORG00000012321) #28	ENSDORG00000024936	ENSDORG00000025251 #29	Mrps14 (ENSDORG00000001869) #30	Tnn (ENSDORG00000008100) #31	4930523C07Rik (ENSDORG00000025115) #32	Tnr (ENSDORG00000016019) #34	Cop1 (ENSDORG00000013376) #35	Astn1 (ENSDORG00000015498)	Brinp2 (ENSDORG00000015506)
Lagomorpha	ANCESTRAL SPECIES	83									ENSGT01060000248544.a.a.b.a.b #15	ENSGT00390000002560 #16	ENSGT00390000015127 #17	ENSGT00940000164279	ENSGT00940000162785 #19	ENSGT00390000008829 #21	ENSGT00520000059630 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554 #25	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000163422	ENSGT00940000154611 #28	ENSGT00390000016470 #29	ENSGT00390000015663 #30	ENSGT00940000160553 #31	ENSGT01030000235811	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #37	ENSGT00390000003140.A
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	4							ENSOCUG00000030746	FASLG (ENSOCUG00000028219) #15	ENSOCUG00000032946	TNFSF18 (ENSOCUG00000021634) #16	TNFSF4 (ENSOCUG00000008587) #17	PRDX6 (ENSOCUG00000015217)	SLC9C2 (ENSOCUG00000015222) #19	ENSOCUG00000036875 #21	TEX50 (ENSOCUG00000029559) #20	ENSOCUG00000009345 #22	CENPL (ENSOCUG00000023803) #23	DARS2 (ENSOCUG00000007841) #24	ZBTB37 (ENSOCUG00000017475) #25	SERPINC1 (ENSOCUG00000002891) #26	RC3H1 (ENSOCUG00000004930) #27	RABGAP1L (ENSOCUG00000027957) #28	GPR52 (ENSOCUG00000038946)	ENSOCUG00000026497 #30	TNN (ENSOCUG00000008543) #31	ENSOCUG00000026409	TNR (ENSOCUG00000017799) #34	COP1 (ENSOCUG00000005463) #35	PAPPA2 (ENSOCUG00000015524) #37	ASTN1 (ENSOCUG00000015550)	BRINP2 (ENSOCUG00000017739)
Rabbit	MODERN SPECIES	558										ENSOCUG00000032762	ZBED1 (ENSOCUG00000023740)	ENSOCUG00000034589	ENSOCUG00000029567	ENSOCUG00000013711	ENSOCUG00000029570	ENSOCUG00000023002 #22	ENSOCUG00000038002	ENSOCUG00000029772	ENSOCUG00000036430
Tree shrew	MODERN SPECIES	5050																KLHL20 (ENSTBEG00000000930) #22	CENPL (ENSTBEG00000002272) #23	DARS2 (ENSTBEG00000002835) #24	ZBTB37 (ENSTBEG00000004052) #25	SERPINC1 (ENSTBEG00000004209) #26	RC3H1 (ENSTBEG00000005015) #27