Percora_a	ANCESTRAL SPECIES	15	ENSGT01030000234531.A.b.b.b.i.a.a.b.b ##17	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b ##17	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##17	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #7	ENSGT01030000234531.A.b.b.b.i.a.b.d #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a ##17	ENSGT01030000234531.A.b.b.b.j ##17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00940000162785.e.b ##19	ENSGT00940000162785.e.a #19	ENSGT00520000059630 #21	ENSGT00390000008829 #20	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000171257	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663 #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Bovidae	ANCESTRAL SPECIES	15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #8	ENSGT01030000234531.A.b.b.b.i.a.b.d #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a #11	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00940000162785.e.b ##19	ENSGT00940000162785.e.a #19	ENSGT00390000008829 #20	ENSGT00520000059630 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000171257	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Caprinae	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a.h ##17	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a #11	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b.a #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.b.d #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00550000074794.k.a #18	ENSGT00940000162785.e.a #19	ENSGT00390000008829 #20	ENSGT00520000059630 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35	ENSGT00940000158543 #36	ENSGT00390000003140.A #37
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020010970 #7	ENSOARG00020011175 #8	ENSOARG00020011744 #9	ENSOARG00020011972 #10	ENSOARG00020012138 #11	ENSOARG00020012197 #12	ENSOARG00020012350 #13	ENSOARG00020012846 #14	ENSOARG00020013654 #15	ENSOARG00020013835 #16	ENSOARG00020014021 #17	PRDX6 (ENSOARG00020014193) #18	SLC9C2 (ENSOARG00020014285) #19	ANKRD45 (ENSOARG00020014528) #20	TEX50 (ENSOARG00020014586) #21	KLHL20 (ENSOARG00020014628) #22	CENPL (ENSOARG00020014693) #23	DARS2 (ENSOARG00020014755) #24	ENSOARG00020015310 #25	SERPINC1 (ENSOARG00020015384) #26	RC3H1 (ENSOARG00020015501) #27	CACYBP (ENSOARG00020017064) #28	MRPS14 (ENSOARG00020017142) #29	ENSOARG00020017178 #30	TNN (ENSOARG00020017235) #31	KIAA0040 (ENSOARG00020018039) #32	ENSOARG00020018060 #33	TNR (ENSOARG00020018083) #34	COP1 (ENSOARG00020018276) #35	PAPPA2 (ENSOARG00020019091) #36	ASTN1 (ENSOARG00020019347) #37
Goat	MODERN SPECIES	7	PDPN (ENSCHIG00000018527)	LRRC38 (ENSCHIG00000025277)	ENSCHIG00000014605 ##17	ENSCHIG00000004814 ##17	ENSCHIG00000014501 #15	ENSCHIG00000020507 #11	ENSCHIG00000008224 #13	ENSCHIG00000014888 ##17	ENSCHIG00000020333 #17	CFAP107 (ENSCHIG00000011019)	AADACL3 (ENSCHIG00000019769)	ENSCHIG00000016311 ##18	SLC9C2 (ENSCHIG00000025093) #19	ANKRD45 (ENSCHIG00000023019) #20	TEX50 (ENSCHIG00000012059) #21	KLHL20 (ENSCHIG00000017507) #22	CENPL (ENSCHIG00000013061) #23	DARS2 (ENSCHIG00000024830) #24	ZBTB37 (ENSCHIG00000020050)	SERPINC1 (ENSCHIG00000010653) #26	RC3H1 (ENSCHIG00000002873) #27	RABGAP1L (ENSCHIG00000025778)	CACYBP (ENSCHIG00000021556) #28	MRPS14 (ENSCHIG00000009993) #29	TNN (ENSCHIG00000016451) #31	KIAA0040 (ENSCHIG00000012091) #32	ENSCHIG00000011098 #33	TNR (ENSCHIG00000009082) #34	COP1 (ENSCHIG00000017410) #35	ENSCHIG00000014154	ENSCHIG00000008095
Bovinae	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #8	ENSGT01030000234531.A.b.b.b.i.a.b.d #15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #7	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a #11	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00940000162785.e.b ##19	ENSGT00390000008829 #20	ENSGT00520000059630 #21	ENSGT00940000155161 #22	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000171257	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
American bison	MODERN SPECIES	3204	ENSBBBG00000015138 ##17	ENSBBBG00000015074 #8	ENSBBBG00000015055 #15	ENSBBBG00000003719 #7	ENSBBBG00000003702 #12	ENSBBBG00000006952 #13	ENSBBBG00000003594 #14	ENSBBBG00000000878 #16	ENSBBBG00000001187 #17	CFAP107 (ENSBBBG00000001198)	AADACL3 (ENSBBBG00000001223)	ENSBBBG00000001232 ##18	ENSBBBG00000014915 ##19	ANKRD45 (ENSBBBG00000014894) #20	TEX50 (ENSBBBG00000014893) #21	KLHL20 (ENSBBBG00000003672) #22	CENPL (ENSBBBG00000014872) #23	DARS2 (ENSBBBG00000014851) #24	ZBTB37 (ENSBBBG00000014612)	SERPINC1 (ENSBBBG00000014603) #26	RC3H1 (ENSBBBG00000014592) #27	RABGAP1L (ENSBBBG00000007217)	CACYBP (ENSBBBG00000003339) #28	ENSBBBG00000014428 #29	TNN (ENSBBBG00000003322) #31	KIAA0040 (ENSBBBG00000003278) #32	ENSBBBG00000003276 #33	TNR (ENSBBBG00000014346) #34	COP1 (ENSBBBG00000007454) #35	ENSBBBG00000001427	PAPPA2 (ENSBBBG00000014249) #36
Bos	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #7	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a #11	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00940000162785.e.a #19	ENSGT00520000059630 #21	ENSGT00940000162785.e.b ##19	ENSGT00390000008829 #20	ENSGT00940000155161 #22	ENSGT01100000263481.n.a.a.a.b.b.b.a.a.a.b.b.a.a.a.a	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000171257	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34
Bos_b	ANCESTRAL SPECIES	27	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a ##17	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #8	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a #11	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b.b ##18	ENSGT00940000162785.e.b ##19	ENSGT00390000008829 #20	ENSGT00520000059630 #21	ENSGT00940000155161 #22	ENSGT01100000263481.n.a.a.a.b.b.b.a.a.a.b.b.a.a.a.a	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT00940000171257	ENSGT00940000163422	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34
Cow	MODERN SPECIES	7	ENSBTAG00000054313 #7	ENSBTAG00000051774 #7	ENSBTAG00000053765 #7	ENSBTAG00000053475 #11	ENSBTAG00000052938 #12	ENSBTAG00000054186 #13	ENSBTAG00000052006 #14	ENSBTAG00000051707 #16	ENSBTAG00000012389 #17	CFAP107 (ENSBTAG00000012158)	AADACL3 (ENSBTAG00000015373)	PRDX6 (ENSBTAG00000004855) ##18	ENSBTAG00000002231 ##19	ANKRD45 (ENSBTAG00000044117) #20	TEX50 (ENSBTAG00000046799) #21	KLHL20 (ENSBTAG00000024485) #22	CENPL (ENSBTAG00000006925) #23	DARS2 (ENSBTAG00000004358) #24	ZBTB37 (ENSBTAG00000004361)	SERPINC1 (ENSBTAG00000004362) #26	RC3H1 (ENSBTAG00000052708) #27	RABGAP1L (ENSBTAG00000027809)	ENSBTAG00000049490	GPR52 (ENSBTAG00000055112)	ENSBTAG00000024482	CACYBP (ENSBTAG00000001107) #28	MRPS14 (ENSBTAG00000001109) #29	TNN (ENSBTAG00000015650) #31	KIAA0040 (ENSBTAG00000017691) #32	ENSBTAG00000051894 #33	TNR (ENSBTAG00000011706) #34
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005010530 ##17	ENSBIXG00005010457 ##17	ENSBIXG00005000883 ##17	ENSBIXG00005000864 #8	ENSBIXG00005010103 #15	ENSBIXG00005006987 #11	ENSBIXG00005009912 #12	ENSBIXG00005007254 #14	ENSBIXG00005009342 #16	ENSBIXG00005008982 #17	CFAP107 (ENSBIXG00005008930)	AADACL3 (ENSBIXG00005008924)	ENSBIXG00005008899 #18	ANKRD45 (ENSBIXG00005008801) #20	TEX50 (ENSBIXG00005008775) #21	KLHL20 (ENSBIXG00005008757) #22	ENSBIXG00005008720	CENPL (ENSBIXG00005008715) #23	ENSBIXG00005008696	DARS2 (ENSBIXG00005008677) #24	ZBTB37 (ENSBIXG00005008598)	SERPINC1 (ENSBIXG00005008583) #26	RC3H1 (ENSBIXG00005008560) #27	RABGAP1L (ENSBIXG00005000199)	ENSBIXG00005008402	ENSBIXG00005008391	CACYBP (ENSBIXG00005008338) #28	ENSBIXG00005005899 #29	TNN (ENSBIXG00005008259) #31	KIAA0040 (ENSBIXG00005000118) #32	ENSBIXG00005008100 #33
Bos_a	ANCESTRAL SPECIES	8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #8	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #7	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b #17	ENSGT00390000014553	ENSGT00940000162160	ENSGT00550000074794.k.b ##18	ENSGT00940000162785.e.b ##19	ENSGT00520000059630 #21	ENSGT00940000162785.e.a #19	ENSGT00390000008829 #20	ENSGT00940000155161 #22	ENSGT01100000263481.n.a.a.a.b.b.b.a.a.a.b.b.a.a.a.a	ENSGT00390000013877 #23	ENSGT01030000234618.B #24	ENSGT00940000159554	ENSGT00940000157967 #26	ENSGT00940000157143 #27	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.a.b.a.b.b.a.a.a	ENSGT00940000154611	ENSGT00390000016470 #28	ENSGT00390000015663.s #29	ENSGT00940000160553 #31	ENSGT00620000089392 #32	ENSGT00900000143593 #33	ENSGT00940000157761 #34	ENSGT00920000149161.f #35
Domestic yak	MODERN SPECIES	5	ENSBGRG00000021508 #7	ENSBGRG00000021556 #12	ENSBGRG00000021586 #13	ENSBGRG00000021633	ENSBGRG00000021643 #14	ENSBGRG00000021649 #16	ENSBGRG00000021662 #17	ENSBGRG00000021698	CFAP107 (ENSBGRG00000021714)	ENSBGRG00000021790	PRDX6 (ENSBGRG00000021918) ##18	ENSBGRG00000021978 ##19	ENSBGRG00000022059 #19	ANKRD45 (ENSBGRG00000022136) #20	TEX50 (ENSBGRG00000022239) #21	KLHL20 (ENSBGRG00000022259) #22	ENSBGRG00000022365	ENSBGRG00000003761 #23	DARS2 (ENSBGRG00000003809) #24	ZBTB37 (ENSBGRG00000004020)	SERPINC1 (ENSBGRG00000004062) #26	RC3H1 (ENSBGRG00000004088) #27	ENSBGRG00000004220	RABGAP1L (ENSBGRG00000004274)	ENSBGRG00000004651	ENSBGRG00000004677	CACYBP (ENSBGRG00000004812) #28	MRPS14 (ENSBGRG00000004938) #29	TNN (ENSBGRG00000005011) #31	KIAA0040 (ENSBGRG00000005374) #32	ENSBGRG00000005388 #33
Wild yak	MODERN SPECIES	349				ENSBMUG00000006654 #13	ENSBMUG00000006641	ENSBMUG00000006581 #14	ENSBMUG00000006168 #16	ENSBMUG00000005846 #17	CFAP107 (ENSBMUG00000005829)	AADACL3 (ENSBMUG00000005806)	PRDX6 (ENSBMUG00000005743) ##18	ENSBMUG00000005719 ##19	ENSBMUG00000005698 #19	TEX50 (ENSBMUG00000005675) #21	ANKRD45 (ENSBMUG00000005670) #20	KLHL20 (ENSBMUG00000005662) #22	CENPL (ENSBMUG00000005639) #23	DARS2 (ENSBMUG00000005332) #24	ZBTB37 (ENSBMUG00000004980)	SERPINC1 (ENSBMUG00000004958) #26	RC3H1 (ENSBMUG00000004934) #27	RABGAP1L (ENSBMUG00000004856)	CACYBP (ENSBMUG00000004739) #28	MRPS14 (ENSBMUG00000004719) #29	TNN (ENSBMUG00000004709) #31	KIAA0040 (ENSBMUG00000004668) #32	ENSBMUG00000004652 #33
Siberian musk deer	MODERN SPECIES	389	ENSMMSG00000005559 #15	ENSMMSG00000005419 #8	ENSMMSG00000005284 #7	ENSMMSG00000005072 ##17	ENSMMSG00000004665 #13	ENSMMSG00000022826 #14	ENSMMSG00000022796 #15	ENSMMSG00000022549 #16	ENSMMSG00000022525 ##17	CFAP107 (ENSMMSG00000022463)	AADACL3 (ENSMMSG00000022451)	PRDX6 (ENSMMSG00000022441) ##18	SLC9C2 (ENSMMSG00000022406) ##19	TEX50 (ENSMMSG00000022386) #21	ANKRD45 (ENSMMSG00000022372) #20	KLHL20 (ENSMMSG00000022338) #22	ENSMMSG00000022323 #23	DARS2 (ENSMMSG00000022150) #24	ZBTB37 (ENSMMSG00000022040)	SERPINC1 (ENSMMSG00000022012) #26	RC3H1 (ENSMMSG00000021966) #27	ENSMMSG00000021949	RABGAP1L (ENSMMSG00000021419)	CACYBP (ENSMMSG00000021336) #28	MRPS14 (ENSMMSG00000021314) #29	TNN (ENSMMSG00000020875) #31	KIAA0040 (ENSMMSG00000020785) #32	TNR (ENSMMSG00000020695) #34	COP1 (ENSMMSG00000020527) #35	PAPPA2 (ENSMMSG00000020443) #36	ASTN1 (ENSMMSG00000020289) #37