Rodentia_A	ANCESTRAL SPECIES	12			ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00960000191470	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000165471 #12	ENSGT00940000154095.b.a #14	ENSGT00940000154205.h #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000162156	ENSGT00950000183019.e	ENSGT00950000183019.f.a
Hystricomorpha	ANCESTRAL SPECIES	35					ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000154095.b.a #14	ENSGT00940000154205.h #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000162156	ENSGT00950000183019.e	ENSGT00950000183019.f.a
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000042205 #7	ENSHGLG00000019103 #8	DYNC2I1 (ENSHGLG00000006228) #9	ESYT2 (ENSHGLG00000004302) #10	NCAPG2 (ENSHGLG00000005951) #11	ENSHGLG00000036053 #12	ENSHGLG00000050437 #13	ENSHGLG00000050124 #14	DNAJB6 (ENSHGLG00000018860) #15	UBE3C (ENSHGLG00000008254) #16	MNX1 (ENSHGLG00000006212) #17	NOM1 (ENSHGLG00000007392) #18	LMBR1 (ENSHGLG00000010444) #19	RNF32 (ENSHGLG00000037782) #20	ENSHGLG00000033097 #21	SHH (ENSHGLG00000005693) #22	RBM33 (ENSHGLG00000008580) #23	ENSHGLG00000003981 #24	EN2 (ENSHGLG00000050255) #25	ENSHGLG00000018944 #26	HTR5A (ENSHGLG00000013321) #27	ENSHGLG00000038895 #28	ENSHGLG00000010566 #29	ENSHGLG00000007949 #30	ENSHGLG00000034272 #31	ENSHGLG00000037188 #32	TPK1 (ENSHGLG00000034976) #33	ENSHGLG00000042656 #34	NOBOX (ENSHGLG00000047619) #35	ARHGEF5 (ENSHGLG00000013088) #36	ENSHGLG00000021206 #37
Hystricomorpha_a	ANCESTRAL SPECIES	40					ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000154095.b.a #14	ENSGT00940000154205.h #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000162156	ENSGT00950000183019.e	ENSGT00950000183019.f.a
Guinea pig	MODERN SPECIES	32	PPM1E (ENSCPOG00000037064)	RAD51C (ENSCPOG00000004586)	ENSCPOG00000001249	ENSCPOG00000027402	Vipr2 (ENSCPOG00000006143) #8	DYNC2I1 (ENSCPOG00000036377) #9	ESYT2 (ENSCPOG00000009970) #10	NCAPG2 (ENSCPOG00000009954) #11	ENSCPOG00000022941	DNAJB6 (ENSCPOG00000031435) #15	UBE3C (ENSCPOG00000013408) #16	ENSCPOG00000022207 #17	NOM1 (ENSCPOG00000025538) #18	LMBR1 (ENSCPOG00000003305) #19	RNF32 (ENSCPOG00000012026) #20	SHH (ENSCPOG00000023638) #22	RBM33 (ENSCPOG00000011852) #23	ENSCPOG00000009846 #24	EN2 (ENSCPOG00000024572) #25	INSIG1 (ENSCPOG00000014739) #26	HTR5A (ENSCPOG00000007970) #27	PAXIP1 (ENSCPOG00000001303)	DPP6 (ENSCPOG00000003511) #29	ENSCPOG00000003695	XRCC2 (ENSCPOG00000012263)	CCT8L2 (ENSCPOG00000020546)	KMT2C (ENSCPOG00000001857)	GALNT11 (ENSCPOG00000005174)	GALNTL5 (ENSCPOG00000005168)	ENSCPOG00000022472	PRKAG2 (ENSCPOG00000015691)
Hystricomorpha_b	ANCESTRAL SPECIES	40					ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000154095.b.a #14	ENSGT00940000154205.h.jc.a #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227	ENSGT00940000162156	ENSGT00950000183019.e	ENSGT00950000183019.f.a
Degu	MODERN SPECIES	68			VIPR2 (ENSODEG00000009696) #8	DYNC2I1 (ENSODEG00000013131) #9	ENSODEG00000010339	ESYT2 (ENSODEG00000011842) #10	NCAPG2 (ENSODEG00000012038) #11	ENSODEG00000011519 #15	UBE3C (ENSODEG00000009899) #16	MNX1 (ENSODEG00000010950) #17	NOM1 (ENSODEG00000009399) #18	ENSODEG00000019843	ENSODEG00000010749 #19	RNF32 (ENSODEG00000010017) #20	ENSODEG00000019851	SHH (ENSODEG00000010106) #22	ENSODEG00000009918 #23	ENSODEG00000010830 #23	ENSODEG00000010168 #24	EN2 (ENSODEG00000010942) #25	INSIG1 (ENSODEG00000010315) #26	HTR5A (ENSODEG00000014269) #27	PAXIP1 (ENSODEG00000011288)	DPP6 (ENSODEG00000011104) #29	ENSODEG00000009981	ENSODEG00000009802	ENSODEG00000010322	ENSODEG00000010160	GALNT11 (ENSODEG00000010700)	GALNTL5 (ENSODEG00000010884)	ENSODEG00000010230
Long-tailed chinchilla	MODERN SPECIES	198														ENSCLAG00000001407 #19	RNF32 (ENSCLAG00000001359) #20	ENSCLAG00000001349 #22	RBM33 (ENSCLAG00000001190) #23	ENSCLAG00000001129 #24	ENSCLAG00000001118 #25	INSIG1 (ENSCLAG00000001112) #26	HTR5A (ENSCLAG00000001100) #27	PAXIP1 (ENSCLAG00000000995)	ENSCLAG00000002985	DPP6 (ENSCLAG00000002591) #29	ENSCLAG00000002298	XRCC2 (ENSCLAG00000002275)	CCT8L2 (ENSCLAG00000002244)	KMT2C (ENSCLAG00000001864)	GALNT11 (ENSCLAG00000001492)	GALNTL5 (ENSCLAG00000001429)	PRKAG2 (ENSCLAG00000001384)
Sciuridae	ANCESTRAL SPECIES	7		ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00960000191470	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000165471 #12	ENSGT00940000154095.b.a #14	ENSGT00960000189764.a	ENSGT00940000154205.h #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227.e	ENSGT00940000162156	ENSGT00950000183019.f.a	ENSGT00940000159945
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005004583	VIPR2 (ENSSVLG00005004620) #8	ENSSVLG00005004685 #9	ENSSVLG00005004697	ESYT2 (ENSSVLG00005004730) #10	NCAPG2 (ENSSVLG00005004770) #11	ENSSVLG00005004918	ENSSVLG00005004938	ENSSVLG00005004992 #15	UBE3C (ENSSVLG00005005098) #16	MNX1 (ENSSVLG00005005127) #17	NOM1 (ENSSVLG00005005155) #18	LMBR1 (ENSSVLG00005005244) #19	RNF32 (ENSSVLG00005005337) #20	ENSSVLG00005005359	SHH (ENSSVLG00005005393) #22	ENSSVLG00005005430 #23	ENSSVLG00005005471 #23	ENSSVLG00005005541 #24	EN2 (ENSSVLG00005005587) #25	INSIG1 (ENSSVLG00005005612) #26	HTR5A (ENSSVLG00005005652) #27	PAXIP1 (ENSSVLG00005005680)	DPP6 (ENSSVLG00005005798) #29	ENSSVLG00005006154	XRCC2 (ENSSVLG00005006214)	CCT8L2 (ENSSVLG00005006281)	KMT2C (ENSSVLG00005006324)	ENSSVLG00005006622	GALNTL5 (ENSSVLG00005006658)	PRKAG2 (ENSSVLG00005006761)
Marmotini	ANCESTRAL SPECIES	32				ENSGT00940000158089 #8	ENSGT00390000013743 #9	ENSGT00940000156086 #10	ENSGT00490000043432 #11	ENSGT00940000165471 #12	ENSGT00940000154095.b.a #14	ENSGT00940000154205.h #15	ENSGT00940000156321 #16	ENSGT00940000160059.a.a #17	ENSGT00940000153458.A #18	ENSGT00390000007809.b #19	ENSGT00390000003759 #20	ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227.e	ENSGT00940000162156	ENSGT00950000183019.f.a	ENSGT00940000159945
Marmotini_b	ANCESTRAL SPECIES	45																ENSGT00940000159119.b #22	ENSGT00530000063891 #23	ENSGT00940000161119 #24	ENSGT00940000159935 #25	ENSGT00580000081600.c.a #26	ENSGT01010000222287.B.a.b.a #27	ENSGT00940000155757	ENSGT00940000156280 #29	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000163221	ENSGT00940000155281	ENSGT00940000158227.e	ENSGT00940000162156	ENSGT00950000183019.f.a	ENSGT00940000159945
Arctic ground squirrel	MODERN SPECIES	331																SHH (ENSUPAG00010012371) #22	RBM33 (ENSUPAG00010012258) #23	ENSUPAG00010012244 #24	EN2 (ENSUPAG00010012234) #25	INSIG1 (ENSUPAG00010012228) #26	HTR5A (ENSUPAG00010012226) #27	PAXIP1 (ENSUPAG00010012177)	DPP6 (ENSUPAG00010012064) #29
Squirrel	MODERN SPECIES	127																SHH (ENSSTOG00000021031) #22	RBM33 (ENSSTOG00000023973) #23	ENSSTOG00000033276	EN2 (ENSSTOG00000025941) #25	INSIG1 (ENSSTOG00000024857) #26	HTR5A (ENSSTOG00000014566) #27	PAXIP1 (ENSSTOG00000021376)	DPP6 (ENSSTOG00000003823) #29	ENSSTOG00000000969	XRCC2 (ENSSTOG00000002470)	CCT8L2 (ENSSTOG00000025875)	KMT2C (ENSSTOG00000013723)	GALNT11 (ENSSTOG00000005132)	GALNTL5 (ENSSTOG00000012361)	PRKAG2 (ENSSTOG00000021632)	RHEB (ENSSTOG00000004544)
Alpin marmot	MODERN SPECIES	81													NOM1 (ENSMMMG00000018772) #18	LMBR1 (ENSMMMG00000018812) #19	RNF32 (ENSMMMG00000018872) #20	ENSMMMG00000018886 #22	RBM33 (ENSMMMG00000018896) #23	ENSMMMG00000018993 #24	INSIG1 (ENSMMMG00000019001) #26	HTR5A (ENSMMMG00000019020) #27	PAXIP1 (ENSMMMG00000019027)	AKAP9 (ENSMMMG00000019079)	MTERF1 (ENSMMMG00000020406)	FZD1 (ENSMMMG00000020409)	CDK14 (ENSMMMG00000020433)	PTTG1IP2 (ENSMMMG00000020470)	CLDN12 (ENSMMMG00000020483)	GTPBP10 (ENSMMMG00000020487)	ENSMMMG00000020515	FAM237B (ENSMMMG00000020520)	CFAP69 (ENSMMMG00000020526)