Rodentia ANCESTRAL SPECIES 3 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00960000192699 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765 ENSGT00940000162206 #33 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Rodentia_B ANCESTRAL SPECIES 11 ENSGT01050000244970.b #7 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206 #33 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Myomorpha ANCESTRAL SPECIES 25 ENSGT01050000244970.b #7 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206 #33 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Muroidea ANCESTRAL SPECIES 23 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206 #33 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Muroidea_A ANCESTRAL SPECIES 6 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Murinae ANCESTRAL SPECIES 3 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Mus ANCESTRAL SPECIES 4 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Mus_A ANCESTRAL SPECIES 4 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Mus_B ANCESTRAL SPECIES 3 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Mouse MODERN SPECIES 18 Rfx7 (ENSMUSG00000037674) #7 Tex9 (ENSMUSG00000090626) #8 Mns1 (ENSMUSG00000032221) #9 Zfp280d (ENSMUSG00000038535) #10 Tcf12 (ENSMUSG00000032228) #11 Cgnl1 (ENSMUSG00000032232) #12 Myzap (ENSMUSG00000041361) #13 Polr2m (ENSMUSG00000032199) #14 Aldh1a2 (ENSMUSG00000013584) #15 Aqp9 (ENSMUSG00000032204) #16 Lipc (ENSMUSG00000032207) #17 Adam10 (ENSMUSG00000054693) #18 Mindy2 (ENSMUSG00000042444) #19 Sltm (ENSMUSG00000032212) #20 Rnf111 (ENSMUSG00000032217) #21 Ccnb2 (ENSMUSG00000032218) #22 Myo1e (ENSMUSG00000032220) #23 Fam81a (ENSMUSG00000032224) #24 Gcnt3 (ENSMUSG00000032226) #25 Gtf2a2 (ENSMUSG00000033543) #26 Bnip2 (ENSMUSG00000011958) #27 Foxb1 (ENSMUSG00000059246) #28 Anxa2 (ENSMUSG00000032231) #29 Ice2 (ENSMUSG00000032235) #30 Rora (ENSMUSG00000032238) #31 Vps13c (ENSMUSG00000035284) #32 C2cd4a (ENSMUSG00000047990) #33 C2cd4b (ENSMUSG00000091956) #34 Tln2 (ENSMUSG00000052698) #35 Tpm1 (ENSMUSG00000032366) #36 Lactb (ENSMUSG00000032370) #37 Mus_C ANCESTRAL SPECIES 8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.d.a #13 ENSGT00950000183065.A.d.b ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Steppe mouse MODERN SPECIES 3341 Lipc (ENSMSIG00000024928) #17 Adam10 (ENSMSIG00000024905) #18 ENSMSIG00000024899 Mindy2 (ENSMSIG00000024872) #19 ENSMSIG00000024868 Sltm (ENSMSIG00000024797) #20 Rnf111 (ENSMSIG00000024613) #21 Ccnb2 (ENSMSIG00000024583) #22 Myo1e (ENSMSIG00000024480) #23 Fam81a (ENSMSIG00000024458) #24 Gcnt3 (ENSMSIG00000024447) #25 Gtf2a2 (ENSMSIG00000024440) #26 Bnip2 (ENSMSIG00000024382) #27 Foxb1 (ENSMSIG00000024373) #28 ENSMSIG00000024362 ENSMSIG00000024328 #29 Ice2 (ENSMSIG00000024296) #30 Rora (ENSMSIG00000024229) #31 Vps13c (ENSMSIG00000023921) #32 C2cd4a (ENSMSIG00000023906) #33 C2cd4b (ENSMSIG00000023890) #34 Tln2 (ENSMSIG00000023708) #35 ENSMSIG00000023676 spretus MODERN SPECIES 18 Mns1 (MGP_SPRETEiJ_G0033555) #9 Zfp280d (MGP_SPRETEiJ_G0033554) #10 Tcf12 (MGP_SPRETEiJ_G0033553) #11 Cgnl1 (MGP_SPRETEiJ_G0033552) #12 Myzap (MGP_SPRETEiJ_G0033551) #13 MGP_SPRETEiJ_G0033550 ##13 MGP_SPRETEiJ_G0033549 #14 Aldh1a2 (MGP_SPRETEiJ_G0033548) #15 Aqp9 (MGP_SPRETEiJ_G0033547) #16 Lipc (MGP_SPRETEiJ_G0033546) #17 Adam10 (MGP_SPRETEiJ_G0033545) #18 MGP_SPRETEiJ_G0033544 Mindy2 (MGP_SPRETEiJ_G0033543) #19 Sltm (MGP_SPRETEiJ_G0033542) #20 Rnf111 (MGP_SPRETEiJ_G0033541) #21 Ccnb2 (MGP_SPRETEiJ_G0033540) #22 Myo1e (MGP_SPRETEiJ_G0033539) #23 Fam81a (MGP_SPRETEiJ_G0033538) #24 Gcnt3 (MGP_SPRETEiJ_G0033537) #25 Gtf2a2 (MGP_SPRETEiJ_G0033536) ##26 Bnip2 (MGP_SPRETEiJ_G0033535) #27 Foxb1 (MGP_SPRETEiJ_G0033534) #28 Anxa2 (MGP_SPRETEiJ_G0033533) #29 Ice2 (MGP_SPRETEiJ_G0033532) #30 Rora (MGP_SPRETEiJ_G0033531) #31 Vps13c (MGP_SPRETEiJ_G0033530) #32 C2cd4a (MGP_SPRETEiJ_G0033529) #33 MGP_SPRETEiJ_G0033528 #34 Tln2 (MGP_SPRETEiJ_G0033527) #35 Tpm1 (MGP_SPRETEiJ_G0033526) #36 Lactb (MGP_SPRETEiJ_G0033525) #37 Ryukyu mouse MODERN SPECIES 18 Mns1 (MGP_CAROLIEiJ_G0032417) #9 Zfp280d (MGP_CAROLIEiJ_G0032416) #10 Tcf12 (MGP_CAROLIEiJ_G0032415) #11 Cgnl1 (MGP_CAROLIEiJ_G0032414) #12 Myzap (MGP_CAROLIEiJ_G0032413) #13 MGP_CAROLIEiJ_G0032412 ##13 Polr2m (MGP_CAROLIEiJ_G0032411) #14 Aldh1a2 (MGP_CAROLIEiJ_G0032410) #15 Aqp9 (MGP_CAROLIEiJ_G0032409) #16 Lipc (MGP_CAROLIEiJ_G0032408) #17 Adam10 (MGP_CAROLIEiJ_G0032407) #18 MGP_CAROLIEiJ_G0032406 Mindy2 (MGP_CAROLIEiJ_G0032405) #19 Sltm (MGP_CAROLIEiJ_G0032404) #20 Rnf111 (MGP_CAROLIEiJ_G0032403) #21 Ccnb2 (MGP_CAROLIEiJ_G0032402) #22 Myo1e (MGP_CAROLIEiJ_G0032401) #23 Fam81a (MGP_CAROLIEiJ_G0032400) #24 Gcnt3 (MGP_CAROLIEiJ_G0032399) #25 Gtf2a2 (MGP_CAROLIEiJ_G0032398) #26 Bnip2 (MGP_CAROLIEiJ_G0032397) #27 Foxb1 (MGP_CAROLIEiJ_G0032396) #28 Anxa2 (MGP_CAROLIEiJ_G0032395) #29 Ice2 (MGP_CAROLIEiJ_G0032394) #30 Rora (MGP_CAROLIEiJ_G0032393) #31 Vps13c (MGP_CAROLIEiJ_G0032392) #32 C2cd4a (MGP_CAROLIEiJ_G0032391) #33 C2cd4b (MGP_CAROLIEiJ_G0032390) #34 Tln2 (MGP_CAROLIEiJ_G0032389) #35 Tpm1 (MGP_CAROLIEiJ_G0032388) #36 Lactb (MGP_CAROLIEiJ_G0032387) #37 Shrew mouse MODERN SPECIES 1 Mns1 (MGP_PahariEiJ_G0015281) #9 Zfp280d (MGP_PahariEiJ_G0015280) #10 Tcf12 (MGP_PahariEiJ_G0015279) #11 Cgnl1 (MGP_PahariEiJ_G0015278) #12 Myzap (MGP_PahariEiJ_G0015277) #13 MGP_PahariEiJ_G0015276 ##13 Polr2m (MGP_PahariEiJ_G0015275) #14 Aldh1a2 (MGP_PahariEiJ_G0015274) #15 MGP_PahariEiJ_G0015273 #16 Lipc (MGP_PahariEiJ_G0015272) #17 Adam10 (MGP_PahariEiJ_G0015271) #18 MGP_PahariEiJ_G0015270 Mindy2 (MGP_PahariEiJ_G0015269) #19 Sltm (MGP_PahariEiJ_G0015268) #20 Rnf111 (MGP_PahariEiJ_G0015267) #21 Ccnb2 (MGP_PahariEiJ_G0015266) #22 Myo1e (MGP_PahariEiJ_G0015265) #23 Fam81a (MGP_PahariEiJ_G0015264) #24 Gcnt3 (MGP_PahariEiJ_G0015263) #25 Gtf2a2 (MGP_PahariEiJ_G0015262) #26 Bnip2 (MGP_PahariEiJ_G0015261) #27 Foxb1 (MGP_PahariEiJ_G0015260) #28 Anxa2 (MGP_PahariEiJ_G0015259) #29 Ice2 (MGP_PahariEiJ_G0015258) #30 Rora (MGP_PahariEiJ_G0015257) #31 Vps13c (MGP_PahariEiJ_G0015256) #32 C2cd4a (MGP_PahariEiJ_G0015255) #33 C2cd4b (MGP_PahariEiJ_G0015254) #34 Tln2 (MGP_PahariEiJ_G0015253) #35 MGP_PahariEiJ_G0015252 #36 Lactb (MGP_PahariEiJ_G0015251) #37 Rat DUPLICATION Rat MODERN SPECIES Taar7d (ENSRNOG00000068797) Taar7e (ENSRNOG00000064447) Taar7h (ENSRNOG00000063959) ENSRNOG00000067484 Taar8a (ENSRNOG00000070320) Taar8c (ENSRNOG00000062917) Taar9 (ENSRNOG00000026096) LOC108349831 (ENSRNOG00000068524) Stx7 (ENSRNOG00000015670) Moxd1 (ENSRNOG00000015321) Ccn2 (ENSRNOG00000015036) Enpp1 (ENSRNOG00000013994) Enpp3 (ENSRNOG00000013791) Med23 (ENSRNOG00000013422) Arg1 (ENSRNOG00000013304) Ccnb2-ps2 (ENSRNOG00000055111) #22 Akap7 (ENSRNOG00000013202) Epb41l2 (ENSRNOG00000012346) ENSRNOG00000067501 Hmgb2-ps6 (ENSRNOG00000026462) Tmem200a (ENSRNOG00000047783) LOC100360791 (ENSRNOG00000033517) Samd3 (ENSRNOG00000039955) L3mbtl3 (ENSRNOG00000011720) AABR07004232.1 (ENSRNOG00000048904) LOC120097699 (ENSRNOG00000063903) Arhgap18 (ENSRNOG00000011245) AABR07000583.1 (ENSRNOG00000046438) Lama2 (ENSRNOG00000011134) ENSRNOG00000069014 Ptprk (ENSRNOG00000047605) Rat MODERN SPECIES 18 ENSRNOG00000070052 Zfp280d (ENSRNOG00000055631) #10 Tcf12 (ENSRNOG00000057754) #11 Cgnl1 (ENSRNOG00000054080) #12 Polr2m (ENSRNOG00000057676) ##13 Aldh1a2 (ENSRNOG00000055049) #15 Aqp9 (ENSRNOG00000061883) #16 ENSRNOG00000070532 AABR07038881.1 (ENSRNOG00000038181) Lipc (ENSRNOG00000060338) #17 Adam10 (ENSRNOG00000054257) #18 AABR07070609.1 (ENSRNOG00000061240) Mindy2 (ENSRNOG00000061337) #19 Sltm (ENSRNOG00000054446) #20 Rnf111 (ENSRNOG00000060750) #21 Ccnb2 (ENSRNOG00000063216) #22 ENSRNOG00000071086 Myo1e (ENSRNOG00000061928) #23 Fam81a (ENSRNOG00000057501) #24 Gcnt3 (ENSRNOG00000059540) #25 LOC103695118 (ENSRNOG00000056701) #26 Bnip2 (ENSRNOG00000056024) #27 Foxb1 (ENSRNOG00000068150) Anxa2 (ENSRNOG00000010362) #29 Ice2 (ENSRNOG00000010160) #30 Rora (ENSRNOG00000027145) #31 Vps13c (ENSRNOG00000030213) #32 C2cd4a (ENSRNOG00000034236) #33 C2cd4b (ENSRNOG00000065921) #34 Tln2 (ENSRNOG00000018373) #35 Tpm1 (ENSRNOG00000018184) #36 Cricetidae ANCESTRAL SPECIES 4 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.c ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579.c #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Cricetinae ANCESTRAL SPECIES 6 ENSGT01050000244970.b #7 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.c ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579.c #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00390000003710.c.a.b.a.b ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 Chinese hamster chok1gshd MODERN SPECIES 284 Zfp280d (ENSCGRG00001015255) #10 Tcf12 (ENSCGRG00001017769) #11 Cgnl1 (ENSCGRG00001010637) #12 ENSCGRG00001020102 Myzap (ENSCGRG00001022094) ##13 Polr2m (ENSCGRG00001022054) #14 Aldh1a2 (ENSCGRG00001024783) #15 Aqp9 (ENSCGRG00001002590) #16 Lipc (ENSCGRG00001023377) #17 ENSCGRG00001006102 #18 Adam10 (ENSCGRG00001024542) #18 Mindy2 (ENSCGRG00001009624) #19 ENSCGRG00001005799 Sltm (ENSCGRG00001022009) #20 Rnf111 (ENSCGRG00001012805) #21 Ccnb2 (ENSCGRG00001015914) #22 Myo1e (ENSCGRG00001015678) #23 Fam81a (ENSCGRG00001023777) #24 Gcnt3 (ENSCGRG00001010296) #25 ENSCGRG00001010848 #26 Bnip2 (ENSCGRG00001022198) #27 Foxb1 (ENSCGRG00001010230) #28 ENSCGRG00001011336 Anxa2 (ENSCGRG00001011233) #29 Ice2 (ENSCGRG00001014356) #30 Rora (ENSCGRG00001017588) #31 Vps13c (ENSCGRG00001011049) #32 C2cd4a (ENSCGRG00001012662) #33 C2cd4b (ENSCGRG00001010530) #34 Tln2 (ENSCGRG00001010300) #35 Tpm1 (ENSCGRG00001021042) #36 Golden Hamster MODERN SPECIES 672 Cgnl1 (ENSMAUG00000021955) #12 Myzap (ENSMAUG00000022034) ##13 Polr2m (ENSMAUG00000013480) #14 Aldh1a2 (ENSMAUG00000016151) #15 Aqp9 (ENSMAUG00000003309) #16 Lipc (ENSMAUG00000013594) #17 Adam10 (ENSMAUG00000014886) #18 Mindy2 (ENSMAUG00000022175) #19 Sltm (ENSMAUG00000014391) #20 Rnf111 (ENSMAUG00000012803) #21 Ccnb2 (ENSMAUG00000017817) #22 ENSMAUG00000008399 #23 ENSMAUG00000008961 #23 Fam81a (ENSMAUG00000020147) #24 Gcnt3 (ENSMAUG00000005994) #25 ENSMAUG00000018634 #26 Bnip2 (ENSMAUG00000002456) #27 Foxb1 (ENSMAUG00000020300) #28 ENSMAUG00000008646 ENSMAUG00000004371 Anxa2 (ENSMAUG00000018332) #29 Ice2 (ENSMAUG00000013954) #30 Rora (ENSMAUG00000018718) #31 Vps13c (ENSMAUG00000013205) #32 C2cd4a (ENSMAUG00000001316) #33 C2cd4b (ENSMAUG00000011284) #34 Cricetidae_B ANCESTRAL SPECIES 24 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A.c ##13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579.c #18 ENSGT00520000062301 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.nd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.j #29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000162206.p #33 ENSGT00940000162206.o #34 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Northern American deer mouse MODERN SPECIES 20 Mns1 (ENSPEMG00000022047) #9 Zfp280d (ENSPEMG00000020404) #10 Tcf12 (ENSPEMG00000016404) #11 Cgnl1 (ENSPEMG00000021122) #12 Myzap (ENSPEMG00000021267) ##13 ENSPEMG00000029794 Polr2m (ENSPEMG00000027979) #14 Aldh1a2 (ENSPEMG00000017997) #15 Aqp9 (ENSPEMG00000020420) #16 Lipc (ENSPEMG00000021222) #17 Adam10 (ENSPEMG00000023786) #18 ENSPEMG00000028321 Mindy2 (ENSPEMG00000030187) #19 Sltm (ENSPEMG00000013263) #20 Rnf111 (ENSPEMG00000011827) #21 Ccnb2 (ENSPEMG00000010693) #22 Myo1e (ENSPEMG00000020628) #23 Fam81a (ENSPEMG00000020609) #24 ENSPEMG00000026494 Gcnt3 (ENSPEMG00000009036) #25 Gtf2a2 (ENSPEMG00000012295) ##26 Bnip2 (ENSPEMG00000008159) #27 Foxb1 (ENSPEMG00000026372) #28 Anxa2 (ENSPEMG00000020921) #29 Ice2 (ENSPEMG00000023148) #30 Rora (ENSPEMG00000021178) #31 Vps13c (ENSPEMG00000016724) #32 C2cd4a (ENSPEMG00000013754) #33 C2cd4b (ENSPEMG00000016908) #34 ENSPEMG00000031152 Tln2 (ENSPEMG00000021042) #35 Prairie vole MODERN SPECIES 13 Rfx7 (ENSMOCG00000002168) #7 Tex9 (ENSMOCG00000006358) #8 Mns1 (ENSMOCG00000012560) #9 Zfp280d (ENSMOCG00000022695) #10 Tcf12 (ENSMOCG00000022170) #11 Cgnl1 (ENSMOCG00000011190) #12 ENSMOCG00000021256 ##13 ENSMOCG00000008322 Aldh1a2 (ENSMOCG00000015827) #15 Aqp9 (ENSMOCG00000019598) #16 Lipc (ENSMOCG00000021852) #17 Adam10 (ENSMOCG00000016984) #18 Mindy2 (ENSMOCG00000007504) #19 Sltm (ENSMOCG00000012419) #20 Rnf111 (ENSMOCG00000002746) #21 Ccnb2 (ENSMOCG00000014442) #22 Myo1e (ENSMOCG00000013989) #23 Fam81a (ENSMOCG00000021727) #24 Gcnt3 (ENSMOCG00000000478) #25 Gtf2a2 (ENSMOCG00000012789) #26 Bnip2 (ENSMOCG00000021145) #27 Foxb1 (ENSMOCG00000003704) #28 Anxa2 (ENSMOCG00000003789) #29 Ice2 (ENSMOCG00000000614) #30 Rora (ENSMOCG00000016886) #31 Vps13c (ENSMOCG00000000853) #32 C2cd4a (ENSMOCG00000002214) #33 ENSMOCG00000002742 ENSMOCG00000012230 #35 ENSMOCG00000001381 #35 Tpm1 (ENSMOCG00000021399) #36 Upper Galilee mountains blind mole rat MODERN SPECIES 972 Lipc (ENSNGAG00000010841) #17 Adam10 (ENSNGAG00000014635) #18 Mindy2 (ENSNGAG00000003074) #19 Sltm (ENSNGAG00000012328) #20 Rnf111 (ENSNGAG00000002795) #21 Ccnb2 (ENSNGAG00000009381) #22 Myo1e (ENSNGAG00000000794) #23 ENSNGAG00000002054 #24 Gcnt3 (ENSNGAG00000016220) #25 ENSNGAG00000006170 ##26 Bnip2 (ENSNGAG00000013361) #27 Foxb1 (ENSNGAG00000019195) #28 Anxa2 (ENSNGAG00000019852) #29 Ice2 (ENSNGAG00000000786) #30 Rora (ENSNGAG00000001226) #31 Lesser Egyptian jerboa MODERN SPECIES 92 Nedd4 (ENSJJAG00000023014) Rfx7 (ENSJJAG00000004499) #7 ENSJJAG00000008835 #8 Mns1 (ENSJJAG00000006548) #9 Zfp280d (ENSJJAG00000010802) #10 Tcf12 (ENSJJAG00000014280) #11 Cgnl1 (ENSJJAG00000002516) #12 Myzap (ENSJJAG00000003683) #13 Aldh1a2 (ENSJJAG00000019176) #15 Aqp9 (ENSJJAG00000003289) #16 Lipc (ENSJJAG00000016366) #17 Adam10 (ENSJJAG00000020483) #18 Mindy2 (ENSJJAG00000015879) #19 Sltm (ENSJJAG00000006970) #20 Rnf111 (ENSJJAG00000013647) #21 Ccnb2 (ENSJJAG00000022154) #22 Myo1e (ENSJJAG00000010416) #23 Fam81a (ENSJJAG00000021870) #24 ENSJJAG00000016236 ##26 Bnip2 (ENSJJAG00000012193) #27 Foxb1 (ENSJJAG00000010310) #28 Anxa2 (ENSJJAG00000008193) ##29 ENSJJAG00000019838 #30 Rora (ENSJJAG00000018794) #31 Vps13c (ENSJJAG00000012718) #32 Tln2 (ENSJJAG00000016766) #35 Tpm1 (ENSJJAG00000022370) #36 Lactb (ENSJJAG00000009980) #37 ENSJJAG00000021616 Rab8b (ENSJJAG00000016477) ENSJJAG00000018987 Kangaroo rat MODERN SPECIES 330 Nedd4 (ENSDORG00000008857) Rfx7 (ENSDORG00000024632) #7 ENSDORG00000004539 #8 Mns1 (ENSDORG00000004541) #9 Zfp280d (ENSDORG00000010891) #10 Tcf12 (ENSDORG00000007054) #11 Cgnl1 (ENSDORG00000026162) #12 Myzap (ENSDORG00000015312) #13 ENSDORG00000026281 Aldh1a2 (ENSDORG00000011893) #15 Aqp9 (ENSDORG00000007593) #16 Adam10 (ENSDORG00000007459) #18 Mindy2 (ENSDORG00000007461) #19 Sltm (ENSDORG00000007463) #20 Rnf111 (ENSDORG00000006942) #21 Ccnb2 (ENSDORG00000006944) #22 Myo1e (ENSDORG00000008506) #23 ENSDORG00000008945 #24 Gcnt3 (ENSDORG00000005165) #25 Gtf2a2 (ENSDORG00000007867) #26 Bnip2 (ENSDORG00000009318) #27 ENSDORG00000029842 Foxb1 (ENSDORG00000027835) #28 ENSDORG00000024092 Anxa2 (ENSDORG00000015726) #29 ENSDORG00000001443 #30 Rora (ENSDORG00000001826) #31 Vps13c (ENSDORG00000005969) #32 Tln2 (ENSDORG00000001561) #35 Tpm1 (ENSDORG00000002438) #36 Lactb (ENSDORG00000028713) #37 Rodentia_A ANCESTRAL SPECIES 2 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00960000192699 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Sciuridae ANCESTRAL SPECIES 11 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00960000192699 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765.g ENSGT00940000163765.h ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 11 TEX9 (ENSSVLG00005009884) #8 MNS1 (ENSSVLG00005010076) #9 ZNF280D (ENSSVLG00005010148) #10 TCF12 (ENSSVLG00005010240) #11 CGNL1 (ENSSVLG00005010468) #12 MYZAP (ENSSVLG00005010520) #13 ENSSVLG00005010581 #14 ALDH1A2 (ENSSVLG00005010692) #15 AQP9 (ENSSVLG00005011049) #16 LIPC (ENSSVLG00005011202) #17 ENSSVLG00005011609 #18 MINDY2 (ENSSVLG00005011765) #19 ENSSVLG00005011970 SLTM (ENSSVLG00005012027) #20 RNF111 (ENSSVLG00005012286) #21 ENSSVLG00005012381 #22 MYO1E (ENSSVLG00005012637) #23 FAM81A (ENSSVLG00005012717) #24 ENSSVLG00005012768 GCNT3 (ENSSVLG00005012791) #25 GTF2A2 (ENSSVLG00005012828) #26 BNIP2 (ENSSVLG00005012971) #27 FOXB1 (ENSSVLG00005013050) #28 ENSSVLG00005013204 ##29 ICE2 (ENSSVLG00005013300) #30 RORA (ENSSVLG00005013514) #31 VPS13C (ENSSVLG00005014425) #32 ENSSVLG00005017686 ENSSVLG00005017744 TLN2 (ENSSVLG00005017833) #35 TPM1 (ENSSVLG00005018158) #36 Eurasian red squirrel MODERN SPECIES 2 OR52N4 (ENSSVLG00005008147) ENSSVLG00005008162 ENSSVLG00005008174 ENSSVLG00005008186 ENSSVLG00005008212 ENSSVLG00005008237 ENSSVLG00005008274 ENSSVLG00005008286 OR52P1 (ENSSVLG00005008317) ENSSVLG00005008332 ENSSVLG00005008341 ENSSVLG00005008355 TRIM5 (ENSSVLG00005004894) ENSSVLG00005005152 TRIM34 (ENSSVLG00005005182) ENSSVLG00005005208 #22 TRIM6 (ENSSVLG00005005234) OR52B6 (ENSSVLG00005005287) ENSSVLG00005005301 OR52H1 (ENSSVLG00005005309) ENSSVLG00005005326 UBQLNL (ENSSVLG00005005398) UBQLN3 (ENSSVLG00005005427) ENSSVLG00005005439 ENSSVLG00005005452 ENSSVLG00005005482 ENSSVLG00005005502 ENSSVLG00005005517 ENSSVLG00005005539 ENSSVLG00005005551 ENSSVLG00005005572 Eurasian red squirrel MODERN SPECIES 13 WAPL (ENSSVLG00005003658) OPN4 (ENSSVLG00005003591) LDB3 (ENSSVLG00005003371) ENSSVLG00005003290 BMPR1A (ENSSVLG00005003269) MMRN2 (ENSSVLG00005003238) SNCG (ENSSVLG00005003209) ADIRF (ENSSVLG00005003188) ENSSVLG00005003177 ENSSVLG00005003158 ENSSVLG00005003124 ENSSVLG00005003056 ENSSVLG00005003008 GPRIN2 (ENSSVLG00005002992) ENSSVLG00005002980 ENSSVLG00005002964 #22 CH25H (ENSSVLG00005002954) ENSSVLG00005002938 LIPA (ENSSVLG00005002910) ENSSVLG00005002898 IFIT2 (ENSSVLG00005002885) ENSSVLG00005002871 ENSSVLG00005002858 ENSSVLG00005002836 ENSSVLG00005002818 ENSSVLG00005002790 ENSSVLG00005002769 IFIT5 (ENSSVLG00005002741) SLC16A12 (ENSSVLG00005002727) PANK1 (ENSSVLG00005002658) KIF20B (ENSSVLG00005002566) Marmotini ANCESTRAL SPECIES 9 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00960000192699 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765.g ENSGT00940000163765.h ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 4 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00960000192699 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405.pb #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765.g ENSGT00940000163765.h ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 Arctic ground squirrel MODERN SPECIES 33 MNS1 (ENSUPAG00010019137) #9 ZNF280D (ENSUPAG00010019149) #10 ENSUPAG00010019221 TCF12 (ENSUPAG00010019230) #11 ENSUPAG00010019275 CGNL1 (ENSUPAG00010019308) #12 MYZAP (ENSUPAG00010019369) #13 POLR2M (ENSUPAG00010019395) #14 ALDH1A2 (ENSUPAG00010019398) #15 AQP9 (ENSUPAG00010019410) #16 LIPC (ENSUPAG00010019417) #17 ADAM10 (ENSUPAG00010019425) #18 MINDY2 (ENSUPAG00010019437) #19 SLTM (ENSUPAG00010019462) #20 RNF111 (ENSUPAG00010019547) #21 ENSUPAG00010019571 #22 MYO1E (ENSUPAG00010019578) #23 FAM81A (ENSUPAG00010019613) #24 GCNT3 (ENSUPAG00010019625) #25 GTF2A2 (ENSUPAG00010019628) #26 BNIP2 (ENSUPAG00010019641) #27 FOXB1 (ENSUPAG00010019648) #28 ENSUPAG00010019652 ##29 ICE2 (ENSUPAG00010019658) #30 RORA (ENSUPAG00010019675) #31 VPS13C (ENSUPAG00010019706) #32 ENSUPAG00010019880 ENSUPAG00010019882 TLN2 (ENSUPAG00010019892) #35 TPM1 (ENSUPAG00010020041) #36 LACTB (ENSUPAG00010020113) #37 Squirrel MODERN SPECIES 71 TEX9 (ENSSTOG00000003051) #8 MNS1 (ENSSTOG00000006850) #9 ZNF280D (ENSSTOG00000003775) #10 ENSSTOG00000001523 #11 CGNL1 (ENSSTOG00000015855) #12 MYZAP (ENSSTOG00000027285) #13 POLR2M (ENSSTOG00000026874) #14 ALDH1A2 (ENSSTOG00000000292) #15 AQP9 (ENSSTOG00000014131) #16 LIPC (ENSSTOG00000000547) #17 ADAM10 (ENSSTOG00000000561) #18 MINDY2 (ENSSTOG00000000569) #19 ENSSTOG00000030471 SLTM (ENSSTOG00000000584) #20 RNF111 (ENSSTOG00000001267) #21 ENSSTOG00000001275 #22 MYO1E (ENSSTOG00000001282) #23 FAM81A (ENSSTOG00000005017) #24 GCNT3 (ENSSTOG00000004004) #25 GTF2A2 (ENSSTOG00000004010) #26 BNIP2 (ENSSTOG00000020930) #27 FOXB1 (ENSSTOG00000020458) #28 ENSSTOG00000023376 ##29 ENSSTOG00000032826 #30 RORA (ENSSTOG00000012400) #31 VPS13C (ENSSTOG00000003166) #32 ENSSTOG00000003290 TLN2 (ENSSTOG00000014824) #35 TPM1 (ENSSTOG00000009955) #36 LACTB (ENSSTOG00000009971) #37 RPS27L (ENSSTOG00000014532) Marmotini_b ANCESTRAL SPECIES 6 ENSGT00940000155187.B ENSGT00390000015984 ENSGT00940000158117 ENSGT00940000159194 ENSGT00390000002661.b.w ENSGT00390000011922 ENSGT00530000063880.b ENSGT01100000263484.B.b.b ENSGT00390000007776 ENSGT00390000011748 ENSGT00940000157594 ENSGT00390000004040.b ENSGT00520000055634.a ENSGT00940000159740 ENSGT00940000155549.b ENSGT00940000155405.qb #22 ENSGT00940000157893 ENSGT00730000111042 ENSGT00940000153117.A ENSGT00940000154655.a ENSGT01070000253911 ENSGT00390000007815 ENSGT00940000160706 ENSGT00390000010887.a ENSGT00940000155321 ENSGT00390000008161.a.b ENSGT00940000155167.b.b ENSGT00940000159374 ENSGT00940000159514 ENSGT00940000159963 ENSGT00940000155778.A Squirrel MODERN SPECIES 70 ABRA (ENSSTOG00000011664) ANGPT1 (ENSSTOG00000008023) RSPO2 (ENSSTOG00000021427) EIF3E (ENSSTOG00000008976) EMC2 (ENSSTOG00000007594) TMEM74 (ENSSTOG00000001096) TRHR (ENSSTOG00000015264) NUDCD1 (ENSSTOG00000015266) ENY2 (ENSSTOG00000027768) PKHD1L1 (ENSSTOG00000015273) EBAG9 (ENSSTOG00000015326) SYBU (ENSSTOG00000015331) KCNV1 (ENSSTOG00000020827) ENSSTOG00000031426 CSMD3 (ENSSTOG00000013255) ENSSTOG00000032777 #22 TRPS1 (ENSSTOG00000026496) EIF3H (ENSSTOG00000001403) UTP23 (ENSSTOG00000001411) RAD21 (ENSSTOG00000014316) AARD (ENSSTOG00000030141) SLC30A8 (ENSSTOG00000010500) MED30 (ENSSTOG00000000638) EXT1 (ENSSTOG00000015593) SAMD12 (ENSSTOG00000021964) TNFRSF11B (ENSSTOG00000009482) COLEC10 (ENSSTOG00000001872) MAL2 (ENSSTOG00000010053) CCN3 (ENSSTOG00000010067) ENPP2 (ENSSTOG00000001935) TAF2 (ENSSTOG00000013027) Arctic ground squirrel MODERN SPECIES 30 ABRA (ENSUPAG00010014421) ANGPT1 (ENSUPAG00010014401) RSPO2 (ENSUPAG00010014385) EIF3E (ENSUPAG00010014351) EMC2 (ENSUPAG00010014324) TMEM74 (ENSUPAG00010014313) TRHR (ENSUPAG00010014305) NUDCD1 (ENSUPAG00010014294) ENY2 (ENSUPAG00010014269) PKHD1L1 (ENSUPAG00010014083) EBAG9 (ENSUPAG00010014065) SYBU (ENSUPAG00010014018) ENSUPAG00010014010 KCNV1 (ENSUPAG00010014000) CSMD3 (ENSUPAG00010013720) ENSUPAG00010013682 #22 Alpin marmot MODERN SPECIES 7 MNS1 (ENSMMMG00000015043) #9 ZNF280D (ENSMMMG00000014982) #10 ENSMMMG00000014979 TCF12 (ENSMMMG00000014657) #11 CGNL1 (ENSMMMG00000014543) #12 MYZAP (ENSMMMG00000014508) #13 POLR2M (ENSMMMG00000014496) #14 ALDH1A2 (ENSMMMG00000014471) #15 AQP9 (ENSMMMG00000014447) #16 LIPC (ENSMMMG00000014432) #17 ADAM10 (ENSMMMG00000014417) #18 ENSMMMG00000014410 MINDY2 (ENSMMMG00000014393) #19 SLTM (ENSMMMG00000011563) #20 RNF111 (ENSMMMG00000011515) #21 CCNB2 (ENSMMMG00000011506) #22 MYO1E (ENSMMMG00000011477) #23 ENSMMMG00000011444 FAM81A (ENSMMMG00000011428) #24 GCNT3 (ENSMMMG00000011425) #25 GTF2A2 (ENSMMMG00000011388) #26 BNIP2 (ENSMMMG00000011312) #27 FOXB1 (ENSMMMG00000011291) #28 ENSMMMG00000011269 ##29 ENSMMMG00000011237 #30 ENSMMMG00000011212 #30 RORA (ENSMMMG00000011194) #31 VPS13C (ENSMMMG00000011042) #32 ENSMMMG00000011035 ENSMMMG00000011024 ENSMMMG00000011016 Hystricomorpha ANCESTRAL SPECIES 36 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Hystricomorpha_a ANCESTRAL SPECIES 38 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572 #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000163765 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a Hystricomorpha_b ANCESTRAL SPECIES 35 ENSGT00390000018333 #8 ENSGT00730000111210 #9 ENSGT00940000158889 #10 ENSGT00940000155047 #11 ENSGT00940000154489.A #12 ENSGT00950000183065.A #13 ENSGT00950000183065.D #14 ENSGT00940000158898 #15 ENSGT00940000160582 #16 ENSGT00940000157602 #17 ENSGT00940000160579 #18 ENSGT00390000016607.a #19 ENSGT00940000156573 #20 ENSGT00940000157691 #21 ENSGT00940000155405 #22 ENSGT00940000157461 #23 ENSGT00390000004985.b #24 ENSGT00940000159331.b #25 ENSGT00390000014572.dd #26 ENSGT00940000158531 #27 ENSGT00940000160522 #28 ENSGT00940000154257.i.a ##29 ENSGT00390000006883 #30 ENSGT00940000157387 #31 ENSGT00950000183083.a.d.a #32 ENSGT00940000154699 #35 ENSGT01030000234542.b.a.a.b.a.a #36 ENSGT00390000001062 #37 ENSGT00950000182891.a.a.a ENSGT00940000155363 Long-tailed chinchilla MODERN SPECIES 157 TEX9 (ENSCLAG00000010721) #8 MNS1 (ENSCLAG00000009111) #9 ENSCLAG00000008975 ZNF280D (ENSCLAG00000010749) #10 TCF12 (ENSCLAG00000009457) #11 CGNL1 (ENSCLAG00000007046) #12 MYZAP (ENSCLAG00000006426) #13 POLR2M (ENSCLAG00000006251) #14 ALDH1A2 (ENSCLAG00000008024) #15 AQP9 (ENSCLAG00000007276) #16 LIPC (ENSCLAG00000009019) #17 ADAM10 (ENSCLAG00000008259) #18 MINDY2 (ENSCLAG00000007672) #19 SLTM (ENSCLAG00000007160) #20 RNF111 (ENSCLAG00000008225) #21 CCNB2 (ENSCLAG00000008353) #22 MYO1E (ENSCLAG00000008802) #23 FAM81A (ENSCLAG00000008454) #24 GCNT3 (ENSCLAG00000017684) #25 ENSCLAG00000007616 #26 BNIP2 (ENSCLAG00000010658) #27 FOXB1 (ENSCLAG00000009811) #28 ENSCLAG00000007067 ##29 ENSCLAG00000008269 #30 ENSCLAG00000012071 #30 RORA (ENSCLAG00000012113) #31 VPS13C (ENSCLAG00000006472) #32 ENSCLAG00000016591 TLN2 (ENSCLAG00000009840) #35 TPM1 (ENSCLAG00000008921) #36 LACTB (ENSCLAG00000007519) #37 Degu MODERN SPECIES 67 ZNF280D (ENSODEG00000017105) #10 ENSODEG00000017238 ENSODEG00000017113 ENSODEG00000017233 #11 ENSODEG00000017285 #11 CGNL1 (ENSODEG00000017187) #12 ENSODEG00000020457 MYZAP (ENSODEG00000017200) #13 ALDH1A2 (ENSODEG00000017335) #15 AQP9 (ENSODEG00000016950) #16 LIPC (ENSODEG00000017170) #17 ADAM10 (ENSODEG00000017007) #18 MINDY2 (ENSODEG00000017214) #19 SLTM (ENSODEG00000017077) #20 RNF111 (ENSODEG00000017237) #21 CCNB2 (ENSODEG00000016886) #22 ENSODEG00000017886 MYO1E (ENSODEG00000016979) #23 ENSODEG00000016827 #24 ENSODEG00000017154 #26 ENSODEG00000017110 #27 FOXB1 (ENSODEG00000016892) #28 ENSODEG00000017529 ##29 ICE2 (ENSODEG00000017266) #30 RORA (ENSODEG00000016932) #31 VPS13C (ENSODEG00000017192) #32 ENSODEG00000020499 ENSODEG00000016956 TLN2 (ENSODEG00000016531) #35 TPM1 (ENSODEG00000017042) #36 LACTB (ENSODEG00000016877) #37 Guinea pig MODERN SPECIES 101 MEGF11 (ENSCPOG00000006468) RAB11A (ENSCPOG00000037599) DENND4A (ENSCPOG00000013602) SLC24A1 (ENSCPOG00000013596) INTS14 (ENSCPOG00000000764) HACD3 (ENSCPOG00000013593) DPP8 (ENSCPOG00000014124) IGDCC4 (ENSCPOG00000004519) IGDCC3 (ENSCPOG00000006751) PARP16 (ENSCPOG00000025232) CILP (ENSCPOG00000036223) CLPX (ENSCPOG00000003391) MINDY2 (ENSCPOG00000002287) #19 SLTM (ENSCPOG00000026109) #20 RNF111 (ENSCPOG00000010550) #21 CCNB2 (ENSCPOG00000026977) #22 MYO1E (ENSCPOG00000002570) #23 FAM81A (ENSCPOG00000015628) #24 GCNT3 (ENSCPOG00000022353) #25 GTF2A2 (ENSCPOG00000035441) #26 BNIP2 (ENSCPOG00000004962) #27 FOXB1 (ENSCPOG00000020128) #28 ENSCPOG00000006400 ##29 ICE2 (ENSCPOG00000008486) #30 RORA (ENSCPOG00000008494) #31 VPS13C (ENSCPOG00000000102) #32 Naked mole-rat female MODERN SPECIES 19 ENSHGLG00000010333 #10 ENSHGLG00000038848 #11 ENSHGLG00000017862 #11 CGNL1 (ENSHGLG00000014971) #12 ENSHGLG00000032585 MYZAP (ENSHGLG00000012877) #13 ENSHGLG00000011124 #14 ALDH1A2 (ENSHGLG00000006822) #15 AQP9 (ENSHGLG00000040651) #16 LIPC (ENSHGLG00000017247) #17 ENSHGLG00000042059 ADAM10 (ENSHGLG00000008761) #18 MINDY2 (ENSHGLG00000005567) #19 ENSHGLG00000018512 #20 RNF111 (ENSHGLG00000017832) #21 ENSHGLG00000015169 #22 MYO1E (ENSHGLG00000015124) #23 ENSHGLG00000042902 FAM81A (ENSHGLG00000013990) #24 GCNT3 (ENSHGLG00000048945) #25 GTF2A2 (ENSHGLG00000037685) #26 ENSHGLG00000045803 ENSHGLG00000006545 #27 FOXB1 (ENSHGLG00000018464) #28 ENSHGLG00000038903 ENSHGLG00000008172 ##29 NARG2 (ENSHGLG00000041744) #30 RORA (ENSHGLG00000010547) #31 ENSHGLG00000005786 #32 ENSHGLG00000048789 ENSHGLG00000032199