Mammalia	ANCESTRAL SPECIES	68	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000166322	ENSGT00940000157011	ENSGT00940000159103
Theria	ANCESTRAL SPECIES	22	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000166322	ENSGT00940000157011	ENSGT00510000050001	ENSGT00940000159103	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00390000005362
Eutheria	ANCESTRAL SPECIES	8	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000159331.b #26	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257 #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Primates	ANCESTRAL SPECIES	2	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	2	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34	ENSGT00910000147045	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34	ENSGT00910000147045
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34
Vervet Monkey	MODERN SPECIES	18	TEX9 (ENSCSAG00000011830) #7	MNS1 (ENSCSAG00000011864) #8	ZNF280D (ENSCSAG00000011884) #9	TCF12 (ENSCSAG00000011901) #10	CGNL1 (ENSCSAG00000011914) #11	MYZAP (ENSCSAG00000011923) #12	POLR2M (ENSCSAG00000011931) #13	ENSCSAG00000011949 #14	ALDH1A2 (ENSCSAG00000011956) #15	AQP9 (ENSCSAG00000011963) #16	LIPC (ENSCSAG00000011971) #17	ADAM10 (ENSCSAG00000011980) #18	MINDY2 (ENSCSAG00000011994) #19	SLTM (ENSCSAG00000012004) #20	RNF111 (ENSCSAG00000012015) #21	CCNB2 (ENSCSAG00000012024) #22	LDHAL6B (ENSCSAG00000019742) #23	MYO1E (ENSCSAG00000012036) #24	FAM81A (ENSCSAG00000012043) #25	GCNT3 (ENSCSAG00000019741) #26	BNIP2 (ENSCSAG00000012052) #27	FOXB1 (ENSCSAG00000019740) #28	ANXA2 (ENSCSAG00000012062) #29	ICE2 (ENSCSAG00000012073) #30	RORA (ENSCSAG00000012081) #31	VPS13C (ENSCSAG00000012132) #32	C2CD4A (ENSCSAG00000019739) #33	C2CD4B (ENSCSAG00000019738) #34	ENSCSAG00000012210 #35	ENSCSAG00000012237 #36	TLN2 (ENSCSAG00000012262) #37
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000163242.e #23	ENSGT00940000157461 #24	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00910000147045
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00910000147045	ENSGT00940000154699 #37
Pig-tailed macaque	MODERN SPECIES	77	MNS1 (ENSMNEG00000041140) #8	ZNF280D (ENSMNEG00000042755) #9	ENSMNEG00000038740	TCF12 (ENSMNEG00000034483) #10	CGNL1 (ENSMNEG00000036681) #11	MYZAP (ENSMNEG00000036884) #12	ENSMNEG00000031595 #14	AQP9 (ENSMNEG00000041178) #16	ALDH1A2 (ENSMNEG00000035893) #15	LIPC (ENSMNEG00000034628) #17	ADAM10 (ENSMNEG00000040922) #18	MINDY2 (ENSMNEG00000042969) #19	ENSMNEG00000021451	SLTM (ENSMNEG00000025105) #20	RNF111 (ENSMNEG00000004287) #21	CCNB2 (ENSMNEG00000038718) #22	MYO1E (ENSMNEG00000002815) #24	ENSMNEG00000041217	ENSMNEG00000038663	FAM81A (ENSMNEG00000029984) #25	GCNT3 (ENSMNEG00000013859) #26	GTF2A2 (ENSMNEG00000030439)	BNIP2 (ENSMNEG00000033516) #27	FOXB1 (ENSMNEG00000015910) #28	ANXA2 (ENSMNEG00000043015) #29	ICE2 (ENSMNEG00000034514) #30	RORA (ENSMNEG00000020975) #31	VPS13C (ENSMNEG00000030758) #32	ENSMNEG00000013327	TLN2 (ENSMNEG00000028802) #37	ENSMNEG00000034201
Macaca_a	ANCESTRAL SPECIES	2	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000004985.b #25	ENSGT00940000154384.h.b	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00940000164709.a.b.b.a.b.b.b.b.a.a.d.b	ENSGT00940000164709.a.b.b.a.a.a.a.a.b.a	ENSGT00950000183083.a.d.a #32	ENSGT00390000008820.e.b.a.a.a
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000055870	RFX7 (ENSMFAG00000033176)	TEX9 (ENSMFAG00000037934) #7	MNS1 (ENSMFAG00000027011) #8	ZNF280D (ENSMFAG00000036502) #9	TCF12 (ENSMFAG00000031115) #10	CGNL1 (ENSMFAG00000036711) #11	MYZAP (ENSMFAG00000035568) #12	ALDH1A2 (ENSMFAG00000037327) #15	AQP9 (ENSMFAG00000039733) #16	LIPC (ENSMFAG00000034000) #17	ADAM10 (ENSMFAG00000003773) #18	MINDY2 (ENSMFAG00000033162) #19	SLTM (ENSMFAG00000033354) #20	RNF111 (ENSMFAG00000031221) #21	CCNB2 (ENSMFAG00000042779) #22	MYO1E (ENSMFAG00000032366) #24	LDHAL6B (ENSMFAG00000049071) #23	ENSMFAG00000048877	FAM81A (ENSMFAG00000044204) #25	ENSMFAG00000045407	GCNT3 (ENSMFAG00000038485) #26	ENSMFAG00000034656	BNIP2 (ENSMFAG00000033391) #27	ENSMFAG00000063104	FOXB1 (ENSMFAG00000013645) #28	ANXA2 (ENSMFAG00000030479) #29	ICE2 (ENSMFAG00000036919) #30	RORA (ENSMFAG00000043163) #31	ENSMFAG00000055173	ENSMFAG00000058783
Rhesus	MODERN SPECIES	17	TEX9 (ENSMMUG00000019484) #7	MNS1 (ENSMMUG00000019485) #8	ZNF280D (ENSMMUG00000008718) #9	TCF12 (ENSMMUG00000004091) #10	CGNL1 (ENSMMUG00000005179) #11	MYZAP (ENSMMUG00000012690) #12	ALDH1A2 (ENSMMUG00000019504) #15	AQP9 (ENSMMUG00000011225) #16	LIPC (ENSMMUG00000009566) #17	ADAM10 (ENSMMUG00000017507) #18	MINDY2 (ENSMMUG00000018109) #19	ENSMMUG00000061679	SLTM (ENSMMUG00000022200) #20	RNF111 (ENSMMUG00000013089) #21	ENSMMUG00000063524	CCNB2 (ENSMMUG00000029628) #22	MYO1E (ENSMMUG00000012933) #24	LDHAL6B (ENSMMUG00000060242) #23	FAM81A (ENSMMUG00000016390) #25	GCNT3 (ENSMMUG00000018426) #26	GTF2A2 (ENSMMUG00000039935)	BNIP2 (ENSMMUG00000020348) #27	FOXB1 (ENSMMUG00000001379) #28	ANXA2 (ENSMMUG00000012000) #29	ICE2 (ENSMMUG00000021320) #30	RORA (ENSMMUG00000018192) #31	ENSMMUG00000050503	ENSMMUG00000054271	ENSMMUG00000058446	ENSMMUG00000058418	ENSMMUG00000063453
Cercopithecinae_b	ANCESTRAL SPECIES	31	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000163242.e #23	ENSGT00940000157461 #24	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00440000034918.r.i	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	80															ENSPANG00000039559 #21	ENSPANG00000017195 #22	ENSPANG00000046812 #23	ENSPANG00000048292 #24
Olive baboon	MODERN SPECIES	88															ENSPANG00000047271 #21	ENSPANG00000043704 #22	ENSPANG00000017196 #24	ENSPANG00000049121 #23
Cercopithecinae_d	ANCESTRAL SPECIES	37	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00390000018706.m.a	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00390000008820.e.b.a.a.a.a	ENSGT00910000147045
Sooty mangabey	MODERN SPECIES	336	RFX7 (ENSCATG00000041703)	TEX9 (ENSCATG00000030510) #7	MNS1 (ENSCATG00000038230) #8	ZNF280D (ENSCATG00000012535) #9	ENSCATG00000042348	TCF12 (ENSCATG00000014938) #10	CGNL1 (ENSCATG00000036319) #11	MYZAP (ENSCATG00000041308) #12	AQP9 (ENSCATG00000044019) #16	ALDH1A2 (ENSCATG00000044324) #15	LIPC (ENSCATG00000039767) #17	ADAM10 (ENSCATG00000041125) #18	MINDY2 (ENSCATG00000043333) #19	SLTM (ENSCATG00000030254) #20	RNF111 (ENSCATG00000040370) #21	CCNB2 (ENSCATG00000037096) #22	MYO1E (ENSCATG00000034350) #24	ENSCATG00000030798	ENSCATG00000043413	FAM81A (ENSCATG00000031214) #25	GCNT3 (ENSCATG00000040930) #26	ENSCATG00000040454	BNIP2 (ENSCATG00000039445) #27	ENSCATG00000033079	FOXB1 (ENSCATG00000021214) #28	ENSCATG00000034012	ANXA2 (ENSCATG00000043236) #29	ICE2 (ENSCATG00000043106) #30	RORA (ENSCATG00000041834) #31	VPS13C (ENSCATG00000041944) #32	ENSCATG00000020724
Drill	MODERN SPECIES	868			TCF12 (ENSMLEG00000028923) #10	ENSMLEG00000037759	CGNL1 (ENSMLEG00000028818) #11	ENSMLEG00000038639	MYZAP (ENSMLEG00000005112) #12	ALDH1A2 (ENSMLEG00000036167) #15	AQP9 (ENSMLEG00000041087) #16	LIPC (ENSMLEG00000030869) #17	ADAM10 (ENSMLEG00000044106) #18	MINDY2 (ENSMLEG00000032776) #19	ENSMLEG00000028041	SLTM (ENSMLEG00000043355) #20	RNF111 (ENSMLEG00000043927) #21	CCNB2 (ENSMLEG00000032744) #22	MYO1E (ENSMLEG00000028117) #24	ENSMLEG00000014742	FAM81A (ENSMLEG00000041731) #25	ENSMLEG00000035811	GCNT3 (ENSMLEG00000027511) #26	GTF2A2 (ENSMLEG00000037560)	BNIP2 (ENSMLEG00000043321) #27	ENSMLEG00000029597
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	281	ENSGT00910000148328	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00910000147762	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb.a #22	ENSGT00390000016228.o	ENSGT00940000157461 #24	ENSGT00940000154384.h.b	ENSGT00390000004985.b #25
Golden snub-nosed monkey	MODERN SPECIES	1781		TEX9 (ENSRROG00000017857) #7	MNS1 (ENSRROG00000030941) #8	ZNF280D (ENSRROG00000045252) #9	TCF12 (ENSRROG00000038864) #10	CGNL1 (ENSRROG00000038869) #11	MYZAP (ENSRROG00000042851) #12	AQP9 (ENSRROG00000036711) #16	ALDH1A2 (ENSRROG00000038404) #15	LIPC (ENSRROG00000034862) #17	ADAM10 (ENSRROG00000040154) #18	MINDY2 (ENSRROG00000029314) #19	ENSRROG00000017628	SLTM (ENSRROG00000045301) #20	RNF111 (ENSRROG00000042594) #21	ENSRROG00000031107 #22	ENSRROG00000031519	MYO1E (ENSRROG00000033829) #24	ENSRROG00000041714	FAM81A (ENSRROG00000042062) #25	ENSRROG00000039634	GCNT3 (ENSRROG00000010325) #26	GTF2A2 (ENSRROG00000042120)	BNIP2 (ENSRROG00000039446) #27	FOXB1 (ENSRROG00000002054) #28	ANXA2 (ENSRROG00000044822) #29	ICE2 (ENSRROG00000043475) #30	RORA (ENSRROG00000044355) #31	VPS13C (ENSRROG00000031121) #32	C2CD4B (ENSRROG00000040328) #34	ENSRROG00000038361
Black snub-nosed monkey	MODERN SPECIES	128	ENSRBIG00000033708	TEX9 (ENSRBIG00000029670) #7	MNS1 (ENSRBIG00000040030) #8	ZNF280D (ENSRBIG00000044744) #9	TCF12 (ENSRBIG00000028241) #10	CGNL1 (ENSRBIG00000037972) #11	MYZAP (ENSRBIG00000039531) #12	AQP9 (ENSRBIG00000044874) #16	ALDH1A2 (ENSRBIG00000032417) #15	LIPC (ENSRBIG00000044876) #17	ADAM10 (ENSRBIG00000029485) #18	MINDY2 (ENSRBIG00000041728) #19	ENSRBIG00000017789	SLTM (ENSRBIG00000029226) #20	RNF111 (ENSRBIG00000044491) #21	ENSRBIG00000034154 #22	ENSRBIG00000037017	MYO1E (ENSRBIG00000011941) #24	ENSRBIG00000038080	FAM81A (ENSRBIG00000010649) #25	GTF2A2 (ENSRBIG00000043992)	BNIP2 (ENSRBIG00000038818) #27	FOXB1 (ENSRBIG00000022907) #28
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000155405.jb.b #22
Golden snub-nosed monkey	MODERN SPECIES	774																ENSRROG00000029152 #22
Black snub-nosed monkey	MODERN SPECIES	316															OTOGL (ENSRBIG00000041963)	ENSRBIG00000036936 #22	PPP1R12A (ENSRBIG00000039895)	PAWR (ENSRBIG00000029572)	SYT1 (ENSRBIG00000027508)
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000154355.e.b #14	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00680000100037.g.a.b.a.a	ENSGT00910000148040	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000154355.e.b #14	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34	ENSGT00910000147045	ENSGT00940000154699 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000154355.e.b #14	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a.e #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000163242.e #23	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00440000034918.r.i	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34	ENSGT00910000147045
Gorilla	MODERN SPECIES	6	TEX9 (ENSGGOG00000015030) #7	MNS1 (ENSGGOG00000004668) #8	ZNF280D (ENSGGOG00000006070) #9	TCF12 (ENSGGOG00000008166) #10	ENSGGOG00000040721	CGNL1 (ENSGGOG00000026524) #11	GCOM1 (ENSGGOG00000012125) #12	ALDH1A2 (ENSGGOG00000007661) #15	ENSGGOG00000040043 #14	AQP9 (ENSGGOG00000012151) #16	LIPC (ENSGGOG00000008125) #17	ADAM10 (ENSGGOG00000010649) #18	MINDY2 (ENSGGOG00000000256) #19	SLTM (ENSGGOG00000015866) #20	RNF111 (ENSGGOG00000017000) #21	CCNB2 (ENSGGOG00000007644) #22	MYO1E (ENSGGOG00000007653) #24	LDHAL6B (ENSGGOG00000022172) #23	ENSGGOG00000036165	ENSGGOG00000042225	ENSGGOG00000027194	FAM81A (ENSGGOG00000015899) #25	GCNT3 (ENSGGOG00000015222) #26	GTF2A2 (ENSGGOG00000024127)	ENSGGOG00000005147 #27	ENSGGOG00000042348	ENSGGOG00000040675	FOXB1 (ENSGGOG00000024062) #28	ENSGGOG00000009738 #29	ICE2 (ENSGGOG00000022206) #30	ENSGGOG00000040146
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000154355.e.b #14	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a.e #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000163242.e #23	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00440000034918.r.i	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.e.a #33	ENSGT00940000163765.e.b #34	ENSGT00910000147045
Human	MODERN SPECIES	6	MNS1 (ENSG00000138587) #8	ZNF280D (ENSG00000137871) #9	ENSG00000285253	TCF12 (ENSG00000140262) #10	CGNL1 (ENSG00000128849) #11	MYZAP (ENSG00000263155) #12	GCOM1 (ENSG00000137878)	POLR2M (ENSG00000255529) #13	ALDH1A2 (ENSG00000128918) #15	AQP9 (ENSG00000103569) #16	LIPC (ENSG00000166035) #17	ADAM10 (ENSG00000137845) #18	MINDY2 (ENSG00000128923) #19	RNF111 (ENSG00000157450) #21	SLTM (ENSG00000137776) #20	CCNB2 (ENSG00000157456) #22	MYO1E (ENSG00000157483) #24	LDHAL6B (ENSG00000171989) #23	FAM81A (ENSG00000157470) #25	GCNT3 (ENSG00000140297) #26	GTF2A2 (ENSG00000140307)	BNIP2 (ENSG00000140299) #27	FOXB1 (ENSG00000171956) #28	ANXA2 (ENSG00000182718) #29	ICE2 (ENSG00000128915) #30	RORA (ENSG00000069667) #31	VPS13C (ENSG00000129003) #32	C2CD4A (ENSG00000198535) #33	C2CD4B (ENSG00000205502) #34	TLN2 (ENSG00000171914) #37	TPM1 (ENSG00000140416)
Pan	ANCESTRAL SPECIES	20	ENSGT00940000158889 #9	ENSGT00940000153147.m.a.b.i.b	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00390000017491.s.a.b.a	ENSGT00950000183065.A #12	ENSGT00940000158898 #15	ENSGT00940000154355.e.b #14	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a.f #19	ENSGT00390000016607.a.e #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00940000163242.e #23	ENSGT00390000018706.m.b.b.l.a	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000167633	ENSGT00680000100037.g.a.b.a.a	ENSGT00910000148040	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32
Chimpanzee	MODERN SPECIES	6	ZNF280D (ENSPTRG00000007107) #9	TCF12 (ENSPTRG00000007109) #10	ENSPTRG00000051354	CGNL1 (ENSPTRG00000007110) #11	ENSPTRG00000003397	ENSPTRG00000007112 #12	ALDH1A2 (ENSPTRG00000007113) #15	ENSPTRG00000045953 #14	AQP9 (ENSPTRG00000007114) #16	LIPC (ENSPTRG00000007115) #17	ADAM10 (ENSPTRG00000007116) #18	ENSPTRG00000040458	MINDY2 (ENSPTRG00000044903) #19	SLTM (ENSPTRG00000007121) #20	RNF111 (ENSPTRG00000007122) #21	CCNB2 (ENSPTRG00000007123) #22	MYO1E (ENSPTRG00000007124) #24	LDHAL6B (ENSPTRG00000007125) #23	ENSPTRG00000045531	FAM81A (ENSPTRG00000007127) #25	GCNT3 (ENSPTRG00000007128) #26	GTF2A2 (ENSPTRG00000007129)	BNIP2 (ENSPTRG00000007130) #27	ENSPTRG00000049013	ENSPTRG00000047092	ENSPTRG00000048257	FOXB1 (ENSPTRG00000007131) #28	ANXA2 (ENSPTRG00000007132) #29	ENSPTRG00000042801	ICE2 (ENSPTRG00000007133) #30	RORA (ENSPTRG00000052707) #31
Bonobo	MODERN SPECIES	6	ZNF280D (ENSPPAG00000034034) #9	TCF12 (ENSPPAG00000035109) #10	ENSPPAG00000040384	CGNL1 (ENSPPAG00000031337) #11	ENSPPAG00000044087	ENSPPAG00000006446 #12	ALDH1A2 (ENSPPAG00000033733) #15	ENSPPAG00000027982 #14	AQP9 (ENSPPAG00000043955) #16	LIPC (ENSPPAG00000000168) #17	ADAM10 (ENSPPAG00000040346) #18	ENSPPAG00000006779	MINDY2 (ENSPPAG00000040407) #19	SLTM (ENSPPAG00000029308) #20	RNF111 (ENSPPAG00000023370) #21	CCNB2 (ENSPPAG00000037736) #22	MYO1E (ENSPPAG00000042211) #24	LDHAL6B (ENSPPAG00000017634) #23	ENSPPAG00000042872	FAM81A (ENSPPAG00000034650) #25	GCNT3 (ENSPPAG00000006538) #26	GTF2A2 (ENSPPAG00000037230)	ENSPPAG00000040483 #27	ENSPPAG00000036328	ENSPPAG00000004248	FOXB1 (ENSPPAG00000014279) #28	ANXA2 (ENSPPAG00000043943) #29	ICE2 (ENSPPAG00000004647) #30	RORA (ENSPPAG00000038168) #31	VPS13C (ENSPPAG00000029152) #32	ENSPPAG00000002371
Orangutan	MODERN SPECIES	6	ENSPPYG00000035319	TEX9 (ENSPPYG00000006503) #7	MNS1 (ENSPPYG00000037143) #8	ZNF280D (ENSPPYG00000006504) #9	TCF12 (ENSPPYG00000006505) #10	CGNL1 (ENSPPYG00000006506) #11	MYZAP (ENSPPYG00000006507) #12	POLR2M (ENSPPYG00000032331) #13	ALDH1A2 (ENSPPYG00000006508) #15	AQP9 (ENSPPYG00000006510) #16	LIPC (ENSPPYG00000006511) #17	ADAM10 (ENSPPYG00000006512) #18	MINDY2 (ENSPPYG00000006514) #19	SLTM (ENSPPYG00000006515) #20	RNF111 (ENSPPYG00000006516) #21	CCNB2 (ENSPPYG00000006517) #22	MYO1E (ENSPPYG00000006518) #24	LDHAL6B (ENSPPYG00000006520) #23	FAM81A (ENSPPYG00000006521) #25	GTF2A2 (ENSPPYG00000006523)	ENSPPYG00000006524 #27	FOXB1 (ENSPPYG00000006525) #28	ANXA2 (ENSPPYG00000006526) #29	ICE2 (ENSPPYG00000006527) #30	RORA (ENSPPYG00000006528) #31	VPS13C (ENSPPYG00000006529) #32	C2CD4A (ENSPPYG00000006530) #33	C2CD4B (ENSPPYG00000006531) #34	ENSPPYG00000033556	TLN2 (ENSPPYG00000006533) #37	TPM1 (ENSPPYG00000006534)
Gibbon	MODERN SPECIES	21	TUBGCP5 (ENSNLEG00000010987)	CYFIP1 (ENSNLEG00000011085)	NIPA2 (ENSNLEG00000035813)	NIPA1 (ENSNLEG00000030666)	ENSNLEG00000028832	ENSNLEG00000032090 ##35	ENSNLEG00000026899 #12	ALDH1A2 (ENSNLEG00000011260) #15	ENSNLEG00000028949 #14	AQP9 (ENSNLEG00000011318) #16	LIPC (ENSNLEG00000011332) #17	ADAM10 (ENSNLEG00000011378) #18	MINDY2 (ENSNLEG00000011420) #19	SLTM (ENSNLEG00000011440) #20	RNF111 (ENSNLEG00000011505) #21	CCNB2 (ENSNLEG00000011543) #22	MYO1E (ENSNLEG00000011582) #24	LDHAL6B (ENSNLEG00000018898) #23	FAM81A (ENSNLEG00000011636) #25	GCNT3 (ENSNLEG00000011644) #26	GTF2A2 (ENSNLEG00000030007)	ENSNLEG00000011659 #27	ENSNLEG00000027282	ENSNLEG00000028766	FOXB1 (ENSNLEG00000011675) #28	ANXA2 (ENSNLEG00000011678) #29	ICE2 (ENSNLEG00000011832) #30	RORA (ENSNLEG00000011865) #31	VPS13C (ENSNLEG00000011894) #32	C2CD4A (ENSNLEG00000012098) #33	ENSNLEG00000031415 #34
Platyrrhini	ANCESTRAL SPECIES	27	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.f ##33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Cebidae	ANCESTRAL SPECIES	29	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363	ENSGT00390000002049.c.b
Cebidae_a	ANCESTRAL SPECIES	39	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000163568.h	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.jb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.b #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00390000015930.w	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	73	MNS1 (ENSSBOG00000022774) #8	ZNF280D (ENSSBOG00000000088) #9	ENSSBOG00000028904	TCF12 (ENSSBOG00000030977) #10	CGNL1 (ENSSBOG00000034321) #11	MYZAP (ENSSBOG00000034819) #12	POLR2M (ENSSBOG00000033956) #13	ALDH1A2 (ENSSBOG00000033307) #15	AQP9 (ENSSBOG00000033895) #16	LIPC (ENSSBOG00000025703) #17	ADAM10 (ENSSBOG00000032599) #18	MINDY2 (ENSSBOG00000020545) #19	ENSSBOG00000036232	SLTM (ENSSBOG00000018883) #20	RNF111 (ENSSBOG00000024466) #21	ENSSBOG00000032233 #22	MYO1E (ENSSBOG00000033519) #24	FAM81A (ENSSBOG00000036216) #25	GTF2A2 (ENSSBOG00000029949)	BNIP2 (ENSSBOG00000020953) #27	ENSSBOG00000035928	FOXB1 (ENSSBOG00000004847) #28	ANXA2 (ENSSBOG00000019958) #29	ICE2 (ENSSBOG00000031514) #30	RORA (ENSSBOG00000018968) #31	VPS13C (ENSSBOG00000028193) #32	ENSSBOG00000020451	C2CD4A (ENSSBOG00000022275) #33	ENSSBOG00000024933
Bolivian squirrel monkey	MODERN SPECIES	68	ENSSBOG00000020157	ENSSBOG00000021229	REELD1 (ENSSBOG00000016008)	SLC10A7 (ENSSBOG00000026776)	POU4F2 (ENSSBOG00000029758)	TTC29 (ENSSBOG00000018366)	EDNRA (ENSSBOG00000034230)	ENSSBOG00000024941	PRMT9 (ENSSBOG00000030455)	ARHGAP10 (ENSSBOG00000026002)	NR3C2 (ENSSBOG00000020377)	ENSSBOG00000023349	IQCM (ENSSBOG00000032471)	DCLK2 (ENSSBOG00000032668)	MAB21L2 (ENSSBOG00000013535)	ENSSBOG00000032936 #22	ENSSBOG00000031656	ENSSBOG00000034372	LRBA (ENSSBOG00000032154)	ENSSBOG00000023852	PRSS48 (ENSSBOG00000035708)	SH3D19 (ENSSBOG00000029208)	FHIP1A (ENSSBOG00000025309)	GATB (ENSSBOG00000022495)	ENSSBOG00000013483	FBXW7 (ENSSBOG00000028715)	TMEM154 (ENSSBOG00000020640)	TIGD4 (ENSSBOG00000019445)	ENSSBOG00000034828	ARFIP1 (ENSSBOG00000029200)	ENSSBOG00000022577
Capuchin	MODERN SPECIES	74	TNFAIP8 (ENSCCAG00000031642)	DMXL1 (ENSCCAG00000027240)	ENSCCAG00000026798	ENSCCAG00000036816	DTWD2 (ENSCCAG00000035289)	ENSCCAG00000034575	ALDH1A2 (ENSCCAG00000032827) #15	AQP9 (ENSCCAG00000028790) #16	LIPC (ENSCCAG00000000841) #17	ADAM10 (ENSCCAG00000037950) #18	ENSCCAG00000019132	MINDY2 (ENSCCAG00000027011) #19	ENSCCAG00000034613	SLTM (ENSCCAG00000022982) #20	RNF111 (ENSCCAG00000036251) #21	CCNB2 (ENSCCAG00000022599) #22	MYO1E (ENSCCAG00000037233) #24	FAM81A (ENSCCAG00000036641) #25	GTF2A2 (ENSCCAG00000027372)	BNIP2 (ENSCCAG00000018887) #27	FOXB1 (ENSCCAG00000012040) #28	ENSCCAG00000033751	ENSCCAG00000018850	ENSCCAG00000022577 #29	ICE2 (ENSCCAG00000038126) #30
Marmoset	MODERN SPECIES	1	MNS1 (ENSCJAG00000046558) #8	ZNF280D (ENSCJAG00000045928) #9	ENSCJAG00000079886	TCF12 (ENSCJAG00000043084) #10	CGNL1 (ENSCJAG00000040972) #11	POLR2M (ENSCJAG00000047453) #13	ALDH1A2 (ENSCJAG00000002282) #15	AQP9 (ENSCJAG00000085239) #16	LIPC (ENSCJAG00000080400) #17	ENSCJAG00000072076	ADAM10 (ENSCJAG00000020430) #18	MINDY2 (ENSCJAG00000020424) #19	ENSCJAG00000075320	SLTM (ENSCJAG00000020395) #20	RNF111 (ENSCJAG00000020373) #21	CCNB2 (ENSCJAG00000047995) #22	MYO1E (ENSCJAG00000001979) #24	LDHAL6B (ENSCJAG00000054541) #23	ENSCJAG00000073399	FAM81A (ENSCJAG00000044349) #25	GTF2A2 (ENSCJAG00000015225)	GCNT3 (ENSCJAG00000022726) #26	ENSCJAG00000082299	ENSCJAG00000014722 #27	FOXB1 (ENSCJAG00000023331) #28	ENSCJAG00000082396	ANXA2 (ENSCJAG00000003888) #29	ICE2 (ENSCJAG00000003977) #30	RORA (ENSCJAG00000003989) #31	ENSCJAG00000083525	ENSCJAG00000077316
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1045	TEX9 (ENSANAG00000033184) #7	MNS1 (ENSANAG00000037519) #8	ZNF280D (ENSANAG00000036601) #9	ENSANAG00000025937	TCF12 (ENSANAG00000034734) #10	CGNL1 (ENSANAG00000009430) #11	MYZAP (ENSANAG00000037003) #12	POLR2M (ENSANAG00000023616) #13	AQP9 (ENSANAG00000025076) #16	ALDH1A2 (ENSANAG00000021292) #15	LIPC (ENSANAG00000032517) #17	ADAM10 (ENSANAG00000024000) #18	MINDY2 (ENSANAG00000028968) #19	SLTM (ENSANAG00000037031) #20	RNF111 (ENSANAG00000030291) #21	ENSANAG00000034564 #22	MYO1E (ENSANAG00000031231) #24	ENSANAG00000024145	FAM81A (ENSANAG00000030930) #25	ENSANAG00000033630	BNIP2 (ENSANAG00000036618) #27	FOXB1 (ENSANAG00000004930) #28	ENSANAG00000014778	ANXA2 (ENSANAG00000023201) #29	ICE2 (ENSANAG00000029936) #30	ENSANAG00000028963	RORA (ENSANAG00000024475) #31	ENSANAG00000035524	VPS13C (ENSANAG00000028331) #32	ENSANAG00000030627 ##33	TLN2 (ENSANAG00000038172) #37
Mas night monkey	MODERN SPECIES	729	ENSANAG00000032384	ZNF572 (ENSANAG00000019228)	MTSS1 (ENSANAG00000020239)	ENSANAG00000029867	TATDN1 (ENSANAG00000032344)	RNF139 (ENSANAG00000019348)	TMEM65 (ENSANAG00000025471)	FER1L6 (ENSANAG00000025928)	FAM91A1 (ENSANAG00000032395)	ANXA13 (ENSANAG00000025536)	KLHL38 (ENSANAG00000020814)	FBXO32 (ENSANAG00000034454)	ENSANAG00000025283	NTAQ1 (ENSANAG00000027919)	ATAD2 (ENSANAG00000021145)	ENSANAG00000016355 #22	ZHX1 (ENSANAG00000019585)	C8orf76 (ENSANAG00000021417)	FAM83A (ENSANAG00000009236)	TBC1D31 (ENSANAG00000029181)	ENSANAG00000023748	DERL1 (ENSANAG00000032815)	ZHX2 (ENSANAG00000015127)	ENSANAG00000029823	ENSANAG00000030853
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000155405.kb ##22
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00830000128380.q.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00910000147039	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00830000128380.q.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00940000154268.f.p.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029.u	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994.u	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732
Hominidae	ANCESTRAL SPECIES	11	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00940000154268.f.p.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029.u	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00390000001994.u	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000162732	ENSGT00940000159344
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	25	ENSGT00940000154018.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00950000182883.a.b.a.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029.u	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT01060000248928.A.b
Homo/Pan group	ANCESTRAL SPECIES	24	ENSGT00940000154018.b	ENSGT00440000033807	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00950000182883.a.b.a.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029.u	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT01060000248928.A.b
Pan	ANCESTRAL SPECIES	25	ENSGT00940000159770	ENSGT00940000157123	ENSGT00940000154546	ENSGT00940000159083	ENSGT00850000133584	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00940000154268.f.o	ENSGT00950000183206.b.c.a.b.a.b.c.b	ENSGT00940000162399.d	ENSGT00950000182883.a.b.a.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029.u	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT01060000248928.A.b
Chimpanzee	MODERN SPECIES	20	ENSPTRG00000048701	SCIN (ENSPTRG00000018941)	ENSPTRG00000051820	VWDE (ENSPTRG00000018938)	TMEM106B (ENSPTRG00000018937)	ENSPTRG00000052365	ENSPTRG00000051987	THSD7A (ENSPTRG00000018936)	PHF14 (ENSPTRG00000018935)	NDUFA4 (ENSPTRG00000048565)	ENSPTRG00000043057	ENSPTRG00000046649	NXPH1 (ENSPTRG00000018932)	ICA1 (ENSPTRG00000018931)	GLCCI1 (ENSPTRG00000018929)	ENSPTRG00000051825 ##22	UMAD1 (ENSPTRG00000051077)	RPA3 (ENSPTRG00000018927)	MIOS (ENSPTRG00000018926)	COL28A1 (ENSPTRG00000034434)	C1GALT1 (ENSPTRG00000048932)	ENSPTRG00000047119	ENSPTRG00000049642	ENSPTRG00000046263	CCZ1 (ENSPTRG00000051931)	ENSPTRG00000018921	PMS2 (ENSPTRG00000018902)	AIMP2 (ENSPTRG00000018903)	ANKRD61 (ENSPTRG00000018905)	EIF2AK1 (ENSPTRG00000018904)	USP42 (ENSPTRG00000018906)
Bonobo	MODERN SPECIES	20	ENSPPAG00000020570	DGKB (ENSPPAG00000036481)	ETV1 (ENSPPAG00000017100)	ENSPPAG00000022226	SCIN (ENSPPAG00000043890)	ENSPPAG00000013831	ENSPPAG00000036870	TMEM106B (ENSPPAG00000030504)	THSD7A (ENSPPAG00000028160)	PHF14 (ENSPPAG00000041166)	ENSPPAG00000037083	ENSPPAG00000035236	NXPH1 (ENSPPAG00000035580)	ICA1 (ENSPPAG00000031312)	ENSPPAG00000040691	ENSPPAG00000039829 ##22	UMAD1 (ENSPPAG00000030417)	RPA3 (ENSPPAG00000037814)	MIOS (ENSPPAG00000027157)	COL28A1 (ENSPPAG00000011821)	ENSPPAG00000010276	C1GALT1 (ENSPPAG00000029814)	ENSPPAG00000033611	ENSPPAG00000038462	ENSPPAG00000008012	ENSPPAG00000038166	ENSPPAG00000033351	ZNF12 (ENSPPAG00000029109)	ZNF853 (ENSPPAG00000036068)	ENSPPAG00000027476	ENSPPAG00000018724
Gorilla	MODERN SPECIES	20	ETV1 (ENSGGOG00000005918)	ENSGGOG00000044019	ENSGGOG00000039058	SCIN (ENSGGOG00000015597)	ENSGGOG00000036373	VWDE (ENSGGOG00000006434)	TMEM106B (ENSGGOG00000040053)	ENSGGOG00000036858	THSD7A (ENSGGOG00000008011)	PHF14 (ENSGGOG00000006206)	NDUFA4 (ENSGGOG00000001437)	ENSGGOG00000041547	NXPH1 (ENSGGOG00000012360)	ICA1 (ENSGGOG00000007090)	ENSGGOG00000011819	ENSGGOG00000024483 ##22	UMAD1 (ENSGGOG00000008291)	RPA3 (ENSGGOG00000022464)	MIOS (ENSGGOG00000000652)	COL28A1 (ENSGGOG00000010238)	C1GALT1 (ENSGGOG00000036533)	ENSGGOG00000037468	ENSGGOG00000036515	ENSGGOG00000002464	ENSGGOG00000043211	ENSGGOG00000036794	ZNF12 (ENSGGOG00000037007)	ZNF316 (ENSGGOG00000040823)	ZNF853 (ENSGGOG00000042292)	INTS15 (ENSGGOG00000026416)	GRID2IP (ENSGGOG00000008503)
Gibbon	MODERN SPECIES	1	DGKB (ENSNLEG00000016331)	ETV1 (ENSNLEG00000016296)	ARL4A (ENSNLEG00000016295)	SCIN (ENSNLEG00000016265)	ENSNLEG00000035206	ENSNLEG00000028754	VWDE (ENSNLEG00000016235)	TMEM106B (ENSNLEG00000016225)	THSD7A (ENSNLEG00000016197)	PHF14 (ENSNLEG00000016184)	ENSNLEG00000033241	ENSNLEG00000032207	NXPH1 (ENSNLEG00000016182)	ICA1 (ENSNLEG00000016162)	ENSNLEG00000016158	ENSNLEG00000035067 ##22	UMAD1 (ENSNLEG00000016155)	RPA3 (ENSNLEG00000033298)	MIOS (ENSNLEG00000016134)	COL28A1 (ENSNLEG00000016093)	C1GALT1 (ENSNLEG00000016087)	ENSNLEG00000033587	ASNS (ENSNLEG00000016044)	TAC1 (ENSNLEG00000016015)	SDHAF3 (ENSNLEG00000016014)	ENSNLEG00000016010	DLX6 (ENSNLEG00000016008)	ENSNLEG00000032740	ENSNLEG00000016002	ENSNLEG00000015998	SLC25A13 (ENSNLEG00000015945)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000159083	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.b	ENSGT00830000128380.q.a.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000153375.lb.pb.a	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00910000147039	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000159083	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.b	ENSGT00830000128380.q.a.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000153375.lb.pb.a	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00940000162732	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000154546.gb	ENSGT00940000159083	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.b	ENSGT00830000128380.q.a.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000153375.lb.pb.a	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00910000148269
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00940000159083	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.b.b	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.b	ENSGT00830000128380.q.a.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000153375.lb.pb.a	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00940000164236	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344
Cercopithecinae_d	ANCESTRAL SPECIES	10	ENSGT00940000154546.fb.a.b	ENSGT00940000159083	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.b	ENSGT00830000128380.q.a.a	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000153375.lb.pb.a	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00940000164236	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000163409	ENSGT00390000002695	ENSGT00940000159344
Sooty mangabey	MODERN SPECIES	185												ENSCATG00000044948	NXPH1 (ENSCATG00000037000)	ICA1 (ENSCATG00000043201)	GLCCI1 (ENSCATG00000044892)	ENSCATG00000030314 ##22	UMAD1 (ENSCATG00000033366)	RPA3 (ENSCATG00000028204)	MIOS (ENSCATG00000011011)	ENSCATG00000001666	COL28A1 (ENSCATG00000031059)	C1GALT1 (ENSCATG00000030704)	ENSCATG00000043335	ASNS (ENSCATG00000038317)	TAC1 (ENSCATG00000034795)	ENSCATG00000043998	ENSCATG00000032188	DLX5 (ENSCATG00000044853)	DLX6 (ENSCATG00000036157)	ENSCATG00000041545	ENSCATG00000014825
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000159083	ENSGT00850000133584	ENSGT00950000182767.b.b.d.hb.b.a.b.a.a.a.a	ENSGT01100000263477.F	ENSGT00390000005569.x.a.a.b	ENSGT00940000160835	ENSGT00940000158360	ENSGT00940000155427	ENSGT00940000156923	ENSGT00950000182901.a.a.b.b.a.b.a.a.a.b	ENSGT00940000154268.f.k.a	ENSGT00940000153095.g.b.a.a.a.b.a.a.b	ENSGT00950000182883.a.b.a	ENSGT00390000005530.a.b	ENSGT00950000183046.b	ENSGT00940000155405.kb ##22	ENSGT00390000003051	ENSGT00390000008029	ENSGT00390000015038	ENSGT00940000161647	ENSGT00940000155000.u	ENSGT00760000119441.b	ENSGT00390000001994	ENSGT00390000002457	ENSGT00390000008610.a.b.a.b	ENSGT00510000046985.h.b.a.b	ENSGT00390000010029	ENSGT00940000159188	ENSGT00940000157683	ENSGT00910000146930	ENSGT00940000162732
Pig-tailed macaque	MODERN SPECIES	534	ENSMNEG00000042009	ENSMNEG00000044560	ENSMNEG00000017088	ENSMNEG00000026112	VWDE (ENSMNEG00000026368)	TMEM106B (ENSMNEG00000030547)	THSD7A (ENSMNEG00000044846)	ENSMNEG00000033652	ENSMNEG00000041084	PHF14 (ENSMNEG00000031850)	ENSMNEG00000030955	ENSMNEG00000029668	NXPH1 (ENSMNEG00000039744)	ICA1 (ENSMNEG00000044278)	GLCCI1 (ENSMNEG00000040369)	ENSMNEG00000032658 ##22	UMAD1 (ENSMNEG00000044071)	RPA3 (ENSMNEG00000044584)	MIOS (ENSMNEG00000036023)	COL28A1 (ENSMNEG00000035662)	C1GALT1 (ENSMNEG00000029681)	ENSMNEG00000031471	ASNS (ENSMNEG00000043217)	TAC1 (ENSMNEG00000040665)	ENSMNEG00000030799	ENSMNEG00000031425	DLX5 (ENSMNEG00000021136)	DLX6 (ENSMNEG00000041272)	ENSMNEG00000029391	ENSMNEG00000045375	ENSMNEG00000045345
Tarsier	MODERN SPECIES	5046												ENSTSYG00000034109	MINDY2 (ENSTSYG00000000460) #19	SLTM (ENSTSYG00000013581) #20	RNF111 (ENSTSYG00000003352) #21	CCNB2 (ENSTSYG00000013818) #22	MYO1E (ENSTSYG00000007383) #24	FAM81A (ENSTSYG00000035068) #25	ENSTSYG00000027778
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Coquerels sifaka	MODERN SPECIES	729	RFX7 (ENSPCOG00000018306)	TEX9 (ENSPCOG00000010225) #7	MNS1 (ENSPCOG00000026806) #8	ZNF280D (ENSPCOG00000005546) #9	TCF12 (ENSPCOG00000018347) #10	CGNL1 (ENSPCOG00000027665) #11	MYZAP (ENSPCOG00000024273) #12	ENSPCOG00000024884 #13	ALDH1A2 (ENSPCOG00000025133) #15	AQP9 (ENSPCOG00000022893) #16	LIPC (ENSPCOG00000020000) #17	ADAM10 (ENSPCOG00000022185) #18	MINDY2 (ENSPCOG00000027791) #19	SLTM (ENSPCOG00000010624) #20	RNF111 (ENSPCOG00000025013) #21	CCNB2 (ENSPCOG00000023161) #22	MYO1E (ENSPCOG00000013210) #24	FAM81A (ENSPCOG00000008691) #25	ENSPCOG00000017610	BNIP2 (ENSPCOG00000013836) #27	FOXB1 (ENSPCOG00000006338) #28	ENSPCOG00000019595 ##29	ICE2 (ENSPCOG00000021818) #30	RORA (ENSPCOG00000023514) #31
Greater bamboo lemur	MODERN SPECIES	100									AQP9 (ENSPSMG00000020531) #16	LIPC (ENSPSMG00000020516) #17	ADAM10 (ENSPSMG00000020455) #18	ENSPSMG00000020351	MINDY2 (ENSPSMG00000020335) #19	SLTM (ENSPSMG00000020294) #20	RNF111 (ENSPSMG00000020183) #21	CCNB2 (ENSPSMG00000020142) #22	MYO1E (ENSPSMG00000020103) #24	ENSPSMG00000020076	FAM81A (ENSPSMG00000020067) #25	GCNT3 (ENSPSMG00000020054) #26	GTF2A2 (ENSPSMG00000020045)	BNIP2 (ENSPSMG00000020023) #27	FOXB1 (ENSPSMG00000019998) #28	ANXA2 (ENSPSMG00000019989) ##29	ICE2 (ENSPSMG00000019964) #30	RORA (ENSPSMG00000019899) #31	VPS13C (ENSPSMG00000019390) #32	ENSPSMG00000018733 #33
Mouse lemur	MODERN SPECIES	22	TEX9 (ENSMICG00000028185) #7	MNS1 (ENSMICG00000002649) #8	ZNF280D (ENSMICG00000013140) #9	TCF12 (ENSMICG00000009110) #10	CGNL1 (ENSMICG00000002354) #11	MYZAP (ENSMICG00000012910) #12	POLR2M (ENSMICG00000047017) #13	AQP9 (ENSMICG00000038252) #16	ALDH1A2 (ENSMICG00000006105) #15	ENSMICG00000038169	LIPC (ENSMICG00000005871) #17	ADAM10 (ENSMICG00000005882) #18	MINDY2 (ENSMICG00000038206) #19	SLTM (ENSMICG00000013069) #20	RNF111 (ENSMICG00000036162) #21	CCNB2 (ENSMICG00000011608) #22	MYO1E (ENSMICG00000011619) #24	FAM81A (ENSMICG00000011130) #25	ENSMICG00000031559	BNIP2 (ENSMICG00000011145) #27	FOXB1 (ENSMICG00000017700) #28	ANXA2 (ENSMICG00000017701) ##29	ICE2 (ENSMICG00000043974) #30	RORA (ENSMICG00000010861) #31	VPS13C (ENSMICG00000015617) #32	ENSMICG00000042306	ENSMICG00000032839 #33	TLN2 (ENSMICG00000002620) #37	TPM1 (ENSMICG00000028096)	LACTB (ENSMICG00000007103)	ENSMICG00000007109
Bushbaby	MODERN SPECIES	126	MNS1 (ENSOGAG00000001813) #8	ZNF280D (ENSOGAG00000001816) #9	TCF12 (ENSOGAG00000006485) #10	CGNL1 (ENSOGAG00000004011) #11	MYZAP (ENSOGAG00000004013) #12	POLR2M (ENSOGAG00000025752) #13	ALDH1A2 (ENSOGAG00000007796) #15	ENSOGAG00000031619	AQP9 (ENSOGAG00000000483) #16	ENSOGAG00000027328	LIPC (ENSOGAG00000033011) #17	ADAM10 (ENSOGAG00000004350) #18	ENSOGAG00000029975 #19	SLTM (ENSOGAG00000011297) #20	RNF111 (ENSOGAG00000009278) #21	CCNB2 (ENSOGAG00000012885) #22	MYO1E (ENSOGAG00000012887) #24	FAM81A (ENSOGAG00000012897) #25	GCNT3 (ENSOGAG00000014633) #26	GTF2A2 (ENSOGAG00000007061)	BNIP2 (ENSOGAG00000007065) #27	FOXB1 (ENSOGAG00000007643) #28	ENSOGAG00000025065	ENSOGAG00000027159	ENSOGAG00000009952 ##29	ICE2 (ENSOGAG00000007354) #30	RORA (ENSOGAG00000007357) #31	VPS13C (ENSOGAG00000002114) #32	ENSOGAG00000028784 #33	ENSOGAG00000032289 #33	TLN2 (ENSOGAG00000016126) #37
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Tree shrew	MODERN SPECIES	2806															RNF111 (ENSTBEG00000001600) #21	CCNB2 (ENSTBEG00000002739) #22	MYO1E (ENSTBEG00000003262) #24	ENSTBEG00000004904
Glires	ANCESTRAL SPECIES	15	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Lagomorpha	ANCESTRAL SPECIES	7	ENSGT00940000158905	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363
Rabbit	MODERN SPECIES	8	ZNF280D (ENSOCUG00000015094) #9	ENSOCUG00000025662	ENSOCUG00000023894	TCF12 (ENSOCUG00000017812) #10	ENSOCUG00000036890	CGNL1 (ENSOCUG00000003637) #11	MYZAP (ENSOCUG00000002296) #12	POLR2M (ENSOCUG00000036974) #13	ALDH1A2 (ENSOCUG00000016942) #15	AQP9 (ENSOCUG00000009796) #16	LIPC (ENSOCUG00000001647) #17	ADAM10 (ENSOCUG00000016023) #18	ENSOCUG00000006171 #19	SLTM (ENSOCUG00000003327) #20	RNF111 (ENSOCUG00000003338) #21	CCNB2 (ENSOCUG00000001652) #22	MYO1E (ENSOCUG00000015835) #24	FAM81A (ENSOCUG00000005790) #25	GCNT3 (ENSOCUG00000006282) #26	GTF2A2 (ENSOCUG00000011347)	BNIP2 (ENSOCUG00000006277) #27	ICE2 (ENSOCUG00000004153) #30	RORA (ENSOCUG00000012900) #31	VPS13C (ENSOCUG00000002801) #32	ENSOCUG00000010276 #33	ENSOCUG00000031516	ENSOCUG00000038392	TLN2 (ENSOCUG00000013064) #37	TPM1 (ENSOCUG00000014122)	ENSOCUG00000030711	LACTB (ENSOCUG00000009995)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Kangaroo rat	MODERN SPECIES	330	Nedd4 (ENSDORG00000008857)	Rfx7 (ENSDORG00000024632)	ENSDORG00000004539 #7	Mns1 (ENSDORG00000004541) #8	Zfp280d (ENSDORG00000010891) #9	Tcf12 (ENSDORG00000007054) #10	Cgnl1 (ENSDORG00000026162) #11	Myzap (ENSDORG00000015312) #12	ENSDORG00000026281	Aldh1a2 (ENSDORG00000011893) #15	Aqp9 (ENSDORG00000007593) #16	Adam10 (ENSDORG00000007459) #18	Mindy2 (ENSDORG00000007461) #19	Sltm (ENSDORG00000007463) #20	Rnf111 (ENSDORG00000006942) #21	Ccnb2 (ENSDORG00000006944) #22	Myo1e (ENSDORG00000008506) #24	ENSDORG00000008945 #25	Gcnt3 (ENSDORG00000005165) #26	Gtf2a2 (ENSDORG00000007867)	Bnip2 (ENSDORG00000009318) #27	ENSDORG00000029842	Foxb1 (ENSDORG00000027835) #28	ENSDORG00000024092	Anxa2 (ENSDORG00000015726) ##29	ENSDORG00000001443 #30	Rora (ENSDORG00000001826) #31	Vps13c (ENSDORG00000005969) #32	Tln2 (ENSDORG00000001561) #37	Tpm1 (ENSDORG00000002438)	Lactb (ENSDORG00000028713)
Myomorpha	ANCESTRAL SPECIES	25	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Muroidea	ANCESTRAL SPECIES	23	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.c #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579.c #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Cricetinae	ANCESTRAL SPECIES	6	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.c #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579.c #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00390000003710.c.a.b.a.b	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	284	Zfp280d (ENSCGRG00001015255) #9	Tcf12 (ENSCGRG00001017769) #10	Cgnl1 (ENSCGRG00001010637) #11	ENSCGRG00001020102	Myzap (ENSCGRG00001022094) #12	Polr2m (ENSCGRG00001022054) #13	Aldh1a2 (ENSCGRG00001024783) #15	Aqp9 (ENSCGRG00001002590) #16	Lipc (ENSCGRG00001023377) #17	ENSCGRG00001006102 #18	Adam10 (ENSCGRG00001024542) #18	Mindy2 (ENSCGRG00001009624) #19	ENSCGRG00001005799	Sltm (ENSCGRG00001022009) #20	Rnf111 (ENSCGRG00001012805) #21	Ccnb2 (ENSCGRG00001015914) #22	Myo1e (ENSCGRG00001015678) #24	Fam81a (ENSCGRG00001023777) #25	Gcnt3 (ENSCGRG00001010296) #26	ENSCGRG00001010848	Bnip2 (ENSCGRG00001022198) #27	Foxb1 (ENSCGRG00001010230) #28	ENSCGRG00001011336	Anxa2 (ENSCGRG00001011233) ##29	Ice2 (ENSCGRG00001014356) #30	Rora (ENSCGRG00001017588) #31	Vps13c (ENSCGRG00001011049) #32	C2cd4a (ENSCGRG00001012662)	C2cd4b (ENSCGRG00001010530)	Tln2 (ENSCGRG00001010300) #37	Tpm1 (ENSCGRG00001021042)
Golden Hamster	MODERN SPECIES	672						Cgnl1 (ENSMAUG00000021955) #11	Myzap (ENSMAUG00000022034) #12	Polr2m (ENSMAUG00000013480) #13	Aldh1a2 (ENSMAUG00000016151) #15	Aqp9 (ENSMAUG00000003309) #16	Lipc (ENSMAUG00000013594) #17	Adam10 (ENSMAUG00000014886) #18	Mindy2 (ENSMAUG00000022175) #19	Sltm (ENSMAUG00000014391) #20	Rnf111 (ENSMAUG00000012803) #21	Ccnb2 (ENSMAUG00000017817) #22	ENSMAUG00000008399 #24	ENSMAUG00000008961 #24	Fam81a (ENSMAUG00000020147) #25	Gcnt3 (ENSMAUG00000005994) #26	ENSMAUG00000018634	Bnip2 (ENSMAUG00000002456) #27	Foxb1 (ENSMAUG00000020300) #28	ENSMAUG00000008646	ENSMAUG00000004371	Anxa2 (ENSMAUG00000018332) ##29	Ice2 (ENSMAUG00000013954) #30	Rora (ENSMAUG00000018718) #31	Vps13c (ENSMAUG00000013205) #32	C2cd4a (ENSMAUG00000001316)	C2cd4b (ENSMAUG00000011284)
Cricetidae_B	ANCESTRAL SPECIES	24	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.c #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579.c #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Northern American deer mouse	MODERN SPECIES	20	Mns1 (ENSPEMG00000022047) #8	Zfp280d (ENSPEMG00000020404) #9	Tcf12 (ENSPEMG00000016404) #10	Cgnl1 (ENSPEMG00000021122) #11	Myzap (ENSPEMG00000021267) #12	ENSPEMG00000029794	Polr2m (ENSPEMG00000027979) #13	Aldh1a2 (ENSPEMG00000017997) #15	Aqp9 (ENSPEMG00000020420) #16	Lipc (ENSPEMG00000021222) #17	Adam10 (ENSPEMG00000023786) #18	ENSPEMG00000028321	Mindy2 (ENSPEMG00000030187) #19	Sltm (ENSPEMG00000013263) #20	Rnf111 (ENSPEMG00000011827) #21	Ccnb2 (ENSPEMG00000010693) #22	Myo1e (ENSPEMG00000020628) #24	Fam81a (ENSPEMG00000020609) #25	ENSPEMG00000026494	Gcnt3 (ENSPEMG00000009036) #26	Gtf2a2 (ENSPEMG00000012295)	Bnip2 (ENSPEMG00000008159) #27	Foxb1 (ENSPEMG00000026372) #28	Anxa2 (ENSPEMG00000020921) ##29	Ice2 (ENSPEMG00000023148) #30	Rora (ENSPEMG00000021178) #31	Vps13c (ENSPEMG00000016724) #32	C2cd4a (ENSPEMG00000013754)	C2cd4b (ENSPEMG00000016908)	ENSPEMG00000031152	Tln2 (ENSPEMG00000021042) #37
Prairie vole	MODERN SPECIES	13	Rfx7 (ENSMOCG00000002168)	Tex9 (ENSMOCG00000006358) #7	Mns1 (ENSMOCG00000012560) #8	Zfp280d (ENSMOCG00000022695) #9	Tcf12 (ENSMOCG00000022170) #10	Cgnl1 (ENSMOCG00000011190) #11	ENSMOCG00000021256 #12	ENSMOCG00000008322	Aldh1a2 (ENSMOCG00000015827) #15	Aqp9 (ENSMOCG00000019598) #16	Lipc (ENSMOCG00000021852) #17	Adam10 (ENSMOCG00000016984) #18	Mindy2 (ENSMOCG00000007504) #19	Sltm (ENSMOCG00000012419) #20	Rnf111 (ENSMOCG00000002746) #21	Ccnb2 (ENSMOCG00000014442) #22	Myo1e (ENSMOCG00000013989) #24	Fam81a (ENSMOCG00000021727) #25	Gcnt3 (ENSMOCG00000000478) #26	Gtf2a2 (ENSMOCG00000012789)	Bnip2 (ENSMOCG00000021145) #27	Foxb1 (ENSMOCG00000003704) #28	Anxa2 (ENSMOCG00000003789) ##29	Ice2 (ENSMOCG00000000614) #30	Rora (ENSMOCG00000016886) #31	Vps13c (ENSMOCG00000000853) #32	C2cd4a (ENSMOCG00000002214)	ENSMOCG00000002742	ENSMOCG00000012230 #37	ENSMOCG00000001381 #37	Tpm1 (ENSMOCG00000021399)
Murinae	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Mus	ANCESTRAL SPECIES	4	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Mus_A	ANCESTRAL SPECIES	4	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Mus_B	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Mus_C	ANCESTRAL SPECIES	8	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A.d.a #12	ENSGT00950000183065.A.d.b #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00520000062301	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.nd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.p	ENSGT00940000162206.o	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Steppe mouse	MODERN SPECIES	3341									Lipc (ENSMSIG00000024928) #17	Adam10 (ENSMSIG00000024905) #18	ENSMSIG00000024899	Mindy2 (ENSMSIG00000024872) #19	ENSMSIG00000024868	Sltm (ENSMSIG00000024797) #20	Rnf111 (ENSMSIG00000024613) #21	Ccnb2 (ENSMSIG00000024583) #22	Myo1e (ENSMSIG00000024480) #24	Fam81a (ENSMSIG00000024458) #25	Gcnt3 (ENSMSIG00000024447) #26	Gtf2a2 (ENSMSIG00000024440)	Bnip2 (ENSMSIG00000024382) #27	Foxb1 (ENSMSIG00000024373) #28	ENSMSIG00000024362	ENSMSIG00000024328 ##29	Ice2 (ENSMSIG00000024296) #30	Rora (ENSMSIG00000024229) #31	Vps13c (ENSMSIG00000023921) #32	C2cd4a (ENSMSIG00000023906)	C2cd4b (ENSMSIG00000023890)	Tln2 (ENSMSIG00000023708) #37	ENSMSIG00000023676
spretus	MODERN SPECIES	18	Mns1 (MGP_SPRETEiJ_G0033555) #8	Zfp280d (MGP_SPRETEiJ_G0033554) #9	Tcf12 (MGP_SPRETEiJ_G0033553) #10	Cgnl1 (MGP_SPRETEiJ_G0033552) #11	Myzap (MGP_SPRETEiJ_G0033551) #12	MGP_SPRETEiJ_G0033550 #12	MGP_SPRETEiJ_G0033549 #13	Aldh1a2 (MGP_SPRETEiJ_G0033548) #15	Aqp9 (MGP_SPRETEiJ_G0033547) #16	Lipc (MGP_SPRETEiJ_G0033546) #17	Adam10 (MGP_SPRETEiJ_G0033545) #18	MGP_SPRETEiJ_G0033544	Mindy2 (MGP_SPRETEiJ_G0033543) #19	Sltm (MGP_SPRETEiJ_G0033542) #20	Rnf111 (MGP_SPRETEiJ_G0033541) #21	Ccnb2 (MGP_SPRETEiJ_G0033540) #22	Myo1e (MGP_SPRETEiJ_G0033539) #24	Fam81a (MGP_SPRETEiJ_G0033538) #25	Gcnt3 (MGP_SPRETEiJ_G0033537) #26	Gtf2a2 (MGP_SPRETEiJ_G0033536)	Bnip2 (MGP_SPRETEiJ_G0033535) #27	Foxb1 (MGP_SPRETEiJ_G0033534) #28	Anxa2 (MGP_SPRETEiJ_G0033533) ##29	Ice2 (MGP_SPRETEiJ_G0033532) #30	Rora (MGP_SPRETEiJ_G0033531) #31	Vps13c (MGP_SPRETEiJ_G0033530) #32	C2cd4a (MGP_SPRETEiJ_G0033529)	MGP_SPRETEiJ_G0033528	Tln2 (MGP_SPRETEiJ_G0033527) #37	Tpm1 (MGP_SPRETEiJ_G0033526)	Lactb (MGP_SPRETEiJ_G0033525)
Mouse	MODERN SPECIES	18	Rfx7 (ENSMUSG00000037674)	Tex9 (ENSMUSG00000090626) #7	Mns1 (ENSMUSG00000032221) #8	Zfp280d (ENSMUSG00000038535) #9	Tcf12 (ENSMUSG00000032228) #10	Cgnl1 (ENSMUSG00000032232) #11	Myzap (ENSMUSG00000041361) #12	Polr2m (ENSMUSG00000032199) #13	Aldh1a2 (ENSMUSG00000013584) #15	Aqp9 (ENSMUSG00000032204) #16	Lipc (ENSMUSG00000032207) #17	Adam10 (ENSMUSG00000054693) #18	Mindy2 (ENSMUSG00000042444) #19	Sltm (ENSMUSG00000032212) #20	Rnf111 (ENSMUSG00000032217) #21	Ccnb2 (ENSMUSG00000032218) #22	Myo1e (ENSMUSG00000032220) #24	Fam81a (ENSMUSG00000032224) #25	Gcnt3 (ENSMUSG00000032226) #26	Gtf2a2 (ENSMUSG00000033543)	Bnip2 (ENSMUSG00000011958) #27	Foxb1 (ENSMUSG00000059246) #28	Anxa2 (ENSMUSG00000032231) ##29	Ice2 (ENSMUSG00000032235) #30	Rora (ENSMUSG00000032238) #31	Vps13c (ENSMUSG00000035284) #32	C2cd4a (ENSMUSG00000047990)	C2cd4b (ENSMUSG00000091956)	Tln2 (ENSMUSG00000052698) #37	Tpm1 (ENSMUSG00000032366)	Lactb (ENSMUSG00000032370)
Ryukyu mouse	MODERN SPECIES	18	Mns1 (MGP_CAROLIEiJ_G0032417) #8	Zfp280d (MGP_CAROLIEiJ_G0032416) #9	Tcf12 (MGP_CAROLIEiJ_G0032415) #10	Cgnl1 (MGP_CAROLIEiJ_G0032414) #11	Myzap (MGP_CAROLIEiJ_G0032413) #12	MGP_CAROLIEiJ_G0032412 #12	Polr2m (MGP_CAROLIEiJ_G0032411) #13	Aldh1a2 (MGP_CAROLIEiJ_G0032410) #15	Aqp9 (MGP_CAROLIEiJ_G0032409) #16	Lipc (MGP_CAROLIEiJ_G0032408) #17	Adam10 (MGP_CAROLIEiJ_G0032407) #18	MGP_CAROLIEiJ_G0032406	Mindy2 (MGP_CAROLIEiJ_G0032405) #19	Sltm (MGP_CAROLIEiJ_G0032404) #20	Rnf111 (MGP_CAROLIEiJ_G0032403) #21	Ccnb2 (MGP_CAROLIEiJ_G0032402) #22	Myo1e (MGP_CAROLIEiJ_G0032401) #24	Fam81a (MGP_CAROLIEiJ_G0032400) #25	Gcnt3 (MGP_CAROLIEiJ_G0032399) #26	Gtf2a2 (MGP_CAROLIEiJ_G0032398)	Bnip2 (MGP_CAROLIEiJ_G0032397) #27	Foxb1 (MGP_CAROLIEiJ_G0032396) #28	Anxa2 (MGP_CAROLIEiJ_G0032395) ##29	Ice2 (MGP_CAROLIEiJ_G0032394) #30	Rora (MGP_CAROLIEiJ_G0032393) #31	Vps13c (MGP_CAROLIEiJ_G0032392) #32	C2cd4a (MGP_CAROLIEiJ_G0032391)	C2cd4b (MGP_CAROLIEiJ_G0032390)	Tln2 (MGP_CAROLIEiJ_G0032389) #37	Tpm1 (MGP_CAROLIEiJ_G0032388)	Lactb (MGP_CAROLIEiJ_G0032387)
Shrew mouse	MODERN SPECIES	1	Mns1 (MGP_PahariEiJ_G0015281) #8	Zfp280d (MGP_PahariEiJ_G0015280) #9	Tcf12 (MGP_PahariEiJ_G0015279) #10	Cgnl1 (MGP_PahariEiJ_G0015278) #11	Myzap (MGP_PahariEiJ_G0015277) #12	MGP_PahariEiJ_G0015276 #12	Polr2m (MGP_PahariEiJ_G0015275) #13	Aldh1a2 (MGP_PahariEiJ_G0015274) #15	MGP_PahariEiJ_G0015273 #16	Lipc (MGP_PahariEiJ_G0015272) #17	Adam10 (MGP_PahariEiJ_G0015271) #18	MGP_PahariEiJ_G0015270	Mindy2 (MGP_PahariEiJ_G0015269) #19	Sltm (MGP_PahariEiJ_G0015268) #20	Rnf111 (MGP_PahariEiJ_G0015267) #21	Ccnb2 (MGP_PahariEiJ_G0015266) #22	Myo1e (MGP_PahariEiJ_G0015265) #24	Fam81a (MGP_PahariEiJ_G0015264) #25	Gcnt3 (MGP_PahariEiJ_G0015263) #26	Gtf2a2 (MGP_PahariEiJ_G0015262)	Bnip2 (MGP_PahariEiJ_G0015261) #27	Foxb1 (MGP_PahariEiJ_G0015260) #28	Anxa2 (MGP_PahariEiJ_G0015259) ##29	Ice2 (MGP_PahariEiJ_G0015258) #30	Rora (MGP_PahariEiJ_G0015257) #31	Vps13c (MGP_PahariEiJ_G0015256) #32	C2cd4a (MGP_PahariEiJ_G0015255)	C2cd4b (MGP_PahariEiJ_G0015254)	Tln2 (MGP_PahariEiJ_G0015253) #37	MGP_PahariEiJ_G0015252	Lactb (MGP_PahariEiJ_G0015251)
Rat	DUPLICATION
Rat	MODERN SPECIES		Taar7d (ENSRNOG00000068797)	Taar7e (ENSRNOG00000064447)	Taar7h (ENSRNOG00000063959)	ENSRNOG00000067484	Taar8a (ENSRNOG00000070320)	Taar8c (ENSRNOG00000062917)	Taar9 (ENSRNOG00000026096)	LOC108349831 (ENSRNOG00000068524)	Stx7 (ENSRNOG00000015670)	Moxd1 (ENSRNOG00000015321)	Ccn2 (ENSRNOG00000015036)	Enpp1 (ENSRNOG00000013994)	Enpp3 (ENSRNOG00000013791)	Med23 (ENSRNOG00000013422)	Arg1 (ENSRNOG00000013304)	Ccnb2-ps2 (ENSRNOG00000055111) #22	Akap7 (ENSRNOG00000013202)	Epb41l2 (ENSRNOG00000012346)	ENSRNOG00000067501	Hmgb2-ps6 (ENSRNOG00000026462)	Tmem200a (ENSRNOG00000047783)	LOC100360791 (ENSRNOG00000033517)	Samd3 (ENSRNOG00000039955)	L3mbtl3 (ENSRNOG00000011720)	AABR07004232.1 (ENSRNOG00000048904)	LOC120097699 (ENSRNOG00000063903)	Arhgap18 (ENSRNOG00000011245)	AABR07000583.1 (ENSRNOG00000046438)	Lama2 (ENSRNOG00000011134)	ENSRNOG00000069014	Ptprk (ENSRNOG00000047605)
Rat	MODERN SPECIES	18	ENSRNOG00000070052	Zfp280d (ENSRNOG00000055631) #9	Tcf12 (ENSRNOG00000057754) #10	Cgnl1 (ENSRNOG00000054080) #11	Polr2m (ENSRNOG00000057676) #12	Aldh1a2 (ENSRNOG00000055049) #15	Aqp9 (ENSRNOG00000061883) #16	ENSRNOG00000070532	AABR07038881.1 (ENSRNOG00000038181)	Lipc (ENSRNOG00000060338) #17	Adam10 (ENSRNOG00000054257) #18	AABR07070609.1 (ENSRNOG00000061240)	Mindy2 (ENSRNOG00000061337) #19	Sltm (ENSRNOG00000054446) #20	Rnf111 (ENSRNOG00000060750) #21	Ccnb2 (ENSRNOG00000063216) #22	ENSRNOG00000071086	Myo1e (ENSRNOG00000061928) #24	Fam81a (ENSRNOG00000057501) #25	Gcnt3 (ENSRNOG00000059540) #26	LOC103695118 (ENSRNOG00000056701)	Bnip2 (ENSRNOG00000056024) #27	Foxb1 (ENSRNOG00000068150)	Anxa2 (ENSRNOG00000010362) ##29	Ice2 (ENSRNOG00000010160) #30	Rora (ENSRNOG00000027145) #31	Vps13c (ENSRNOG00000030213) #32	C2cd4a (ENSRNOG00000034236)	C2cd4b (ENSRNOG00000065921)	Tln2 (ENSRNOG00000018373) #37	Tpm1 (ENSRNOG00000018184)
Upper Galilee mountains blind mole rat	MODERN SPECIES	972											Lipc (ENSNGAG00000010841) #17	Adam10 (ENSNGAG00000014635) #18	Mindy2 (ENSNGAG00000003074) #19	Sltm (ENSNGAG00000012328) #20	Rnf111 (ENSNGAG00000002795) #21	Ccnb2 (ENSNGAG00000009381) #22	Myo1e (ENSNGAG00000000794) #24	ENSNGAG00000002054 #25	Gcnt3 (ENSNGAG00000016220) #26	ENSNGAG00000006170	Bnip2 (ENSNGAG00000013361) #27	Foxb1 (ENSNGAG00000019195) #28	Anxa2 (ENSNGAG00000019852) ##29	Ice2 (ENSNGAG00000000786) #30	Rora (ENSNGAG00000001226) #31
Lesser Egyptian jerboa	MODERN SPECIES	92	Nedd4 (ENSJJAG00000023014)	Rfx7 (ENSJJAG00000004499)	ENSJJAG00000008835 #7	Mns1 (ENSJJAG00000006548) #8	Zfp280d (ENSJJAG00000010802) #9	Tcf12 (ENSJJAG00000014280) #10	Cgnl1 (ENSJJAG00000002516) #11	Myzap (ENSJJAG00000003683) #12	Aldh1a2 (ENSJJAG00000019176) #15	Aqp9 (ENSJJAG00000003289) #16	Lipc (ENSJJAG00000016366) #17	Adam10 (ENSJJAG00000020483) #18	Mindy2 (ENSJJAG00000015879) #19	Sltm (ENSJJAG00000006970) #20	Rnf111 (ENSJJAG00000013647) #21	Ccnb2 (ENSJJAG00000022154) #22	Myo1e (ENSJJAG00000010416) #24	Fam81a (ENSJJAG00000021870) #25	ENSJJAG00000016236	Bnip2 (ENSJJAG00000012193) #27	Foxb1 (ENSJJAG00000010310) #28	Anxa2 (ENSJJAG00000008193) ##29	ENSJJAG00000019838 #30	Rora (ENSJJAG00000018794) #31	Vps13c (ENSJJAG00000012718) #32	Tln2 (ENSJJAG00000016766) #37	Tpm1 (ENSJJAG00000022370)	Lactb (ENSJJAG00000009980)	ENSJJAG00000021616	Rab8b (ENSJJAG00000016477)	ENSJJAG00000018987
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.g #33	ENSGT00940000163765.h #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	TEX9 (ENSSVLG00005009884) #7	MNS1 (ENSSVLG00005010076) #8	ZNF280D (ENSSVLG00005010148) #9	TCF12 (ENSSVLG00005010240) #10	CGNL1 (ENSSVLG00005010468) #11	MYZAP (ENSSVLG00005010520) #12	ENSSVLG00005010581 #13	ALDH1A2 (ENSSVLG00005010692) #15	AQP9 (ENSSVLG00005011049) #16	LIPC (ENSSVLG00005011202) #17	ENSSVLG00005011609 #18	MINDY2 (ENSSVLG00005011765) #19	ENSSVLG00005011970	SLTM (ENSSVLG00005012027) #20	RNF111 (ENSSVLG00005012286) #21	ENSSVLG00005012381 #22	MYO1E (ENSSVLG00005012637) #24	FAM81A (ENSSVLG00005012717) #25	ENSSVLG00005012768	GCNT3 (ENSSVLG00005012791) #26	GTF2A2 (ENSSVLG00005012828)	BNIP2 (ENSSVLG00005012971) #27	FOXB1 (ENSSVLG00005013050) #28	ENSSVLG00005013204 ##29	ICE2 (ENSSVLG00005013300) #30	RORA (ENSSVLG00005013514) #31	VPS13C (ENSSVLG00005014425) #32	ENSSVLG00005017686 #33	ENSSVLG00005017744 #33	TLN2 (ENSSVLG00005017833) #37	TPM1 (ENSSVLG00005018158)
Eurasian red squirrel	MODERN SPECIES	2	OR52N4 (ENSSVLG00005008147)	ENSSVLG00005008162	ENSSVLG00005008174	ENSSVLG00005008186	ENSSVLG00005008212	ENSSVLG00005008237	ENSSVLG00005008274	ENSSVLG00005008286	OR52P1 (ENSSVLG00005008317)	ENSSVLG00005008332	ENSSVLG00005008341	ENSSVLG00005008355	TRIM5 (ENSSVLG00005004894)	ENSSVLG00005005152	TRIM34 (ENSSVLG00005005182)	ENSSVLG00005005208 #22	TRIM6 (ENSSVLG00005005234)	OR52B6 (ENSSVLG00005005287)	ENSSVLG00005005301	OR52H1 (ENSSVLG00005005309)	ENSSVLG00005005326	UBQLNL (ENSSVLG00005005398)	UBQLN3 (ENSSVLG00005005427)	ENSSVLG00005005439	ENSSVLG00005005452	ENSSVLG00005005482	ENSSVLG00005005502	ENSSVLG00005005517	ENSSVLG00005005539	ENSSVLG00005005551	ENSSVLG00005005572
Eurasian red squirrel	MODERN SPECIES	13	WAPL (ENSSVLG00005003658)	OPN4 (ENSSVLG00005003591)	LDB3 (ENSSVLG00005003371)	ENSSVLG00005003290	BMPR1A (ENSSVLG00005003269)	MMRN2 (ENSSVLG00005003238)	SNCG (ENSSVLG00005003209)	ADIRF (ENSSVLG00005003188)	ENSSVLG00005003177	ENSSVLG00005003158	ENSSVLG00005003124	ENSSVLG00005003056	ENSSVLG00005003008	GPRIN2 (ENSSVLG00005002992)	ENSSVLG00005002980	ENSSVLG00005002964 #22	CH25H (ENSSVLG00005002954)	ENSSVLG00005002938	LIPA (ENSSVLG00005002910)	ENSSVLG00005002898	IFIT2 (ENSSVLG00005002885)	ENSSVLG00005002871	ENSSVLG00005002858	ENSSVLG00005002836	ENSSVLG00005002818	ENSSVLG00005002790	ENSSVLG00005002769	IFIT5 (ENSSVLG00005002741)	SLC16A12 (ENSSVLG00005002727)	PANK1 (ENSSVLG00005002658)	KIF20B (ENSSVLG00005002566)
Marmotini	ANCESTRAL SPECIES	9	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.g #33	ENSGT00940000163765.h #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	4	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.pb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765.g #33	ENSGT00940000163765.h #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Arctic ground squirrel	MODERN SPECIES	33	MNS1 (ENSUPAG00010019137) #8	ZNF280D (ENSUPAG00010019149) #9	ENSUPAG00010019221	TCF12 (ENSUPAG00010019230) #10	ENSUPAG00010019275	CGNL1 (ENSUPAG00010019308) #11	MYZAP (ENSUPAG00010019369) #12	POLR2M (ENSUPAG00010019395) #13	ALDH1A2 (ENSUPAG00010019398) #15	AQP9 (ENSUPAG00010019410) #16	LIPC (ENSUPAG00010019417) #17	ADAM10 (ENSUPAG00010019425) #18	MINDY2 (ENSUPAG00010019437) #19	SLTM (ENSUPAG00010019462) #20	RNF111 (ENSUPAG00010019547) #21	ENSUPAG00010019571 #22	MYO1E (ENSUPAG00010019578) #24	FAM81A (ENSUPAG00010019613) #25	GCNT3 (ENSUPAG00010019625) #26	GTF2A2 (ENSUPAG00010019628)	BNIP2 (ENSUPAG00010019641) #27	FOXB1 (ENSUPAG00010019648) #28	ENSUPAG00010019652 ##29	ICE2 (ENSUPAG00010019658) #30	RORA (ENSUPAG00010019675) #31	VPS13C (ENSUPAG00010019706) #32	ENSUPAG00010019880 #33	ENSUPAG00010019882 #33	TLN2 (ENSUPAG00010019892) #37	TPM1 (ENSUPAG00010020041)	LACTB (ENSUPAG00010020113)
Squirrel	MODERN SPECIES	71	TEX9 (ENSSTOG00000003051) #7	MNS1 (ENSSTOG00000006850) #8	ZNF280D (ENSSTOG00000003775) #9	ENSSTOG00000001523 #10	CGNL1 (ENSSTOG00000015855) #11	MYZAP (ENSSTOG00000027285) #12	POLR2M (ENSSTOG00000026874) #13	ALDH1A2 (ENSSTOG00000000292) #15	AQP9 (ENSSTOG00000014131) #16	LIPC (ENSSTOG00000000547) #17	ADAM10 (ENSSTOG00000000561) #18	MINDY2 (ENSSTOG00000000569) #19	ENSSTOG00000030471	SLTM (ENSSTOG00000000584) #20	RNF111 (ENSSTOG00000001267) #21	ENSSTOG00000001275 #22	MYO1E (ENSSTOG00000001282) #24	FAM81A (ENSSTOG00000005017) #25	GCNT3 (ENSSTOG00000004004) #26	GTF2A2 (ENSSTOG00000004010)	BNIP2 (ENSSTOG00000020930) #27	FOXB1 (ENSSTOG00000020458) #28	ENSSTOG00000023376 ##29	ENSSTOG00000032826 #30	RORA (ENSSTOG00000012400) #31	VPS13C (ENSSTOG00000003166) #32	ENSSTOG00000003290 #33	TLN2 (ENSSTOG00000014824) #37	TPM1 (ENSSTOG00000009955)	LACTB (ENSSTOG00000009971)	RPS27L (ENSSTOG00000014532)
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000155187.B	ENSGT00390000015984	ENSGT00940000158117	ENSGT00940000159194	ENSGT00390000002661.b.w	ENSGT00390000011922	ENSGT00530000063880.b	ENSGT01100000263484.B.b.b	ENSGT00390000007776	ENSGT00390000011748	ENSGT00940000157594	ENSGT00390000004040.b	ENSGT00520000055634.a	ENSGT00940000159740	ENSGT00940000155549.b	ENSGT00940000155405.qb #22	ENSGT00940000157893	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01070000253911	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.A
Squirrel	MODERN SPECIES	70	ABRA (ENSSTOG00000011664)	ANGPT1 (ENSSTOG00000008023)	RSPO2 (ENSSTOG00000021427)	EIF3E (ENSSTOG00000008976)	EMC2 (ENSSTOG00000007594)	TMEM74 (ENSSTOG00000001096)	TRHR (ENSSTOG00000015264)	NUDCD1 (ENSSTOG00000015266)	ENY2 (ENSSTOG00000027768)	PKHD1L1 (ENSSTOG00000015273)	EBAG9 (ENSSTOG00000015326)	SYBU (ENSSTOG00000015331)	KCNV1 (ENSSTOG00000020827)	ENSSTOG00000031426	CSMD3 (ENSSTOG00000013255)	ENSSTOG00000032777 #22	TRPS1 (ENSSTOG00000026496)	EIF3H (ENSSTOG00000001403)	UTP23 (ENSSTOG00000001411)	RAD21 (ENSSTOG00000014316)	AARD (ENSSTOG00000030141)	SLC30A8 (ENSSTOG00000010500)	MED30 (ENSSTOG00000000638)	EXT1 (ENSSTOG00000015593)	SAMD12 (ENSSTOG00000021964)	TNFRSF11B (ENSSTOG00000009482)	COLEC10 (ENSSTOG00000001872)	MAL2 (ENSSTOG00000010053)	CCN3 (ENSSTOG00000010067)	ENPP2 (ENSSTOG00000001935)	TAF2 (ENSSTOG00000013027)
Arctic ground squirrel	MODERN SPECIES	30	ABRA (ENSUPAG00010014421)	ANGPT1 (ENSUPAG00010014401)	RSPO2 (ENSUPAG00010014385)	EIF3E (ENSUPAG00010014351)	EMC2 (ENSUPAG00010014324)	TMEM74 (ENSUPAG00010014313)	TRHR (ENSUPAG00010014305)	NUDCD1 (ENSUPAG00010014294)	ENY2 (ENSUPAG00010014269)	PKHD1L1 (ENSUPAG00010014083)	EBAG9 (ENSUPAG00010014065)	SYBU (ENSUPAG00010014018)	ENSUPAG00010014010	KCNV1 (ENSUPAG00010014000)	CSMD3 (ENSUPAG00010013720)	ENSUPAG00010013682 #22
Alpin marmot	MODERN SPECIES	7	MNS1 (ENSMMMG00000015043) #8	ZNF280D (ENSMMMG00000014982) #9	ENSMMMG00000014979	TCF12 (ENSMMMG00000014657) #10	CGNL1 (ENSMMMG00000014543) #11	MYZAP (ENSMMMG00000014508) #12	POLR2M (ENSMMMG00000014496) #13	ALDH1A2 (ENSMMMG00000014471) #15	AQP9 (ENSMMMG00000014447) #16	LIPC (ENSMMMG00000014432) #17	ADAM10 (ENSMMMG00000014417) #18	ENSMMMG00000014410	MINDY2 (ENSMMMG00000014393) #19	SLTM (ENSMMMG00000011563) #20	RNF111 (ENSMMMG00000011515) #21	CCNB2 (ENSMMMG00000011506) #22	MYO1E (ENSMMMG00000011477) #24	ENSMMMG00000011444	FAM81A (ENSMMMG00000011428) #25	GCNT3 (ENSMMMG00000011425) #26	GTF2A2 (ENSMMMG00000011388)	BNIP2 (ENSMMMG00000011312) #27	FOXB1 (ENSMMMG00000011291) #28	ENSMMMG00000011269 ##29	ENSMMMG00000011237 #30	ENSMMMG00000011212 #30	RORA (ENSMMMG00000011194) #31	VPS13C (ENSMMMG00000011042) #32	ENSMMMG00000011035 #33	ENSMMMG00000011024 #33	ENSMMMG00000011016
Hystricomorpha	ANCESTRAL SPECIES	36		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	38		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	35		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.dd	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.i.a ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363
Long-tailed chinchilla	MODERN SPECIES	157	TEX9 (ENSCLAG00000010721) #7	MNS1 (ENSCLAG00000009111) #8	ENSCLAG00000008975	ZNF280D (ENSCLAG00000010749) #9	TCF12 (ENSCLAG00000009457) #10	CGNL1 (ENSCLAG00000007046) #11	MYZAP (ENSCLAG00000006426) #12	POLR2M (ENSCLAG00000006251) #13	ALDH1A2 (ENSCLAG00000008024) #15	AQP9 (ENSCLAG00000007276) #16	LIPC (ENSCLAG00000009019) #17	ADAM10 (ENSCLAG00000008259) #18	MINDY2 (ENSCLAG00000007672) #19	SLTM (ENSCLAG00000007160) #20	RNF111 (ENSCLAG00000008225) #21	CCNB2 (ENSCLAG00000008353) #22	MYO1E (ENSCLAG00000008802) #24	FAM81A (ENSCLAG00000008454) #25	GCNT3 (ENSCLAG00000017684) #26	ENSCLAG00000007616	BNIP2 (ENSCLAG00000010658) #27	FOXB1 (ENSCLAG00000009811) #28	ENSCLAG00000007067 ##29	ENSCLAG00000008269 #30	ENSCLAG00000012071 #30	RORA (ENSCLAG00000012113) #31	VPS13C (ENSCLAG00000006472) #32	ENSCLAG00000016591	TLN2 (ENSCLAG00000009840) #37	TPM1 (ENSCLAG00000008921)	LACTB (ENSCLAG00000007519)
Degu	MODERN SPECIES	67	ZNF280D (ENSODEG00000017105) #9	ENSODEG00000017238	ENSODEG00000017113	ENSODEG00000017233 #10	ENSODEG00000017285 #10	CGNL1 (ENSODEG00000017187) #11	ENSODEG00000020457	MYZAP (ENSODEG00000017200) #12	ALDH1A2 (ENSODEG00000017335) #15	AQP9 (ENSODEG00000016950) #16	LIPC (ENSODEG00000017170) #17	ADAM10 (ENSODEG00000017007) #18	MINDY2 (ENSODEG00000017214) #19	SLTM (ENSODEG00000017077) #20	RNF111 (ENSODEG00000017237) #21	CCNB2 (ENSODEG00000016886) #22	ENSODEG00000017886	MYO1E (ENSODEG00000016979) #24	ENSODEG00000016827 #25	ENSODEG00000017154	ENSODEG00000017110 #27	FOXB1 (ENSODEG00000016892) #28	ENSODEG00000017529 ##29	ICE2 (ENSODEG00000017266) #30	RORA (ENSODEG00000016932) #31	VPS13C (ENSODEG00000017192) #32	ENSODEG00000020499	ENSODEG00000016956	TLN2 (ENSODEG00000016531) #37	TPM1 (ENSODEG00000017042)	LACTB (ENSODEG00000016877)
Guinea pig	MODERN SPECIES	101	MEGF11 (ENSCPOG00000006468)	RAB11A (ENSCPOG00000037599)	DENND4A (ENSCPOG00000013602)	SLC24A1 (ENSCPOG00000013596)	INTS14 (ENSCPOG00000000764)	HACD3 (ENSCPOG00000013593)	DPP8 (ENSCPOG00000014124)	IGDCC4 (ENSCPOG00000004519)	IGDCC3 (ENSCPOG00000006751)	PARP16 (ENSCPOG00000025232)	CILP (ENSCPOG00000036223)	CLPX (ENSCPOG00000003391)	MINDY2 (ENSCPOG00000002287) #19	SLTM (ENSCPOG00000026109) #20	RNF111 (ENSCPOG00000010550) #21	CCNB2 (ENSCPOG00000026977) #22	MYO1E (ENSCPOG00000002570) #24	FAM81A (ENSCPOG00000015628) #25	GCNT3 (ENSCPOG00000022353) #26	GTF2A2 (ENSCPOG00000035441)	BNIP2 (ENSCPOG00000004962) #27	FOXB1 (ENSCPOG00000020128) #28	ENSCPOG00000006400 ##29	ICE2 (ENSCPOG00000008486) #30	RORA (ENSCPOG00000008494) #31	VPS13C (ENSCPOG00000000102) #32
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000010333 #9	ENSHGLG00000038848 #10	ENSHGLG00000017862 #10	CGNL1 (ENSHGLG00000014971) #11	ENSHGLG00000032585	MYZAP (ENSHGLG00000012877) #12	ENSHGLG00000011124 #13	ALDH1A2 (ENSHGLG00000006822) #15	AQP9 (ENSHGLG00000040651) #16	LIPC (ENSHGLG00000017247) #17	ENSHGLG00000042059	ADAM10 (ENSHGLG00000008761) #18	MINDY2 (ENSHGLG00000005567) #19	ENSHGLG00000018512 #20	RNF111 (ENSHGLG00000017832) #21	ENSHGLG00000015169 #22	MYO1E (ENSHGLG00000015124) #24	ENSHGLG00000042902	FAM81A (ENSHGLG00000013990) #25	GCNT3 (ENSHGLG00000048945) #26	GTF2A2 (ENSHGLG00000037685)	ENSHGLG00000045803	ENSHGLG00000006545 #27	FOXB1 (ENSHGLG00000018464) #28	ENSHGLG00000038903	ENSHGLG00000008172 ##29	NARG2 (ENSHGLG00000041744) #30	RORA (ENSHGLG00000010547) #31	ENSHGLG00000005786 #32	ENSHGLG00000048789	ENSHGLG00000032199
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00910000147045	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00930000152855	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37
Suina	ANCESTRAL SPECIES	12	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00930000152855	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37
Pig	MODERN SPECIES		TCF12 (ENSSSCG00000004600) #10	CGNL1 (ENSSSCG00000035038) #11	MYZAP (ENSSSCG00000004598) #12	POLR2M (ENSSSCG00000030605) #13	ALDH1A2 (ENSSSCG00000025578) #15	ENSSSCG00000046774	AQP9 (ENSSSCG00000004597) #16	ENSSSCG00000055556	LIPC (ENSSSCG00000004596) #17	ENSSSCG00000024660	ADAM10 (ENSSSCG00000004595) #18	MINDY2 (ENSSSCG00000024131) #19	ENSSSCG00000034769	SLTM (ENSSSCG00000004592) #20	RNF111 (ENSSSCG00000004589) #21	CCNB2 (ENSSSCG00000004588) #22	MYO1E (ENSSSCG00000004587) #24	FAM81A (ENSSSCG00000004586) #25	ENSSSCG00000063018	GCNT3 (ENSSSCG00000004584) #26	ENSSSCG00000004583	BNIP2 (ENSSSCG00000004582) #27	FOXB1 (ENSSSCG00000035244) #28	ENSSSCG00000048426	ANXA2 (ENSSSCG00000004578) ##29	ICE2 (ENSSSCG00000004577) #30	RORA (ENSSSCG00000004576) #31	VPS13C (ENSSSCG00000036431) #32	ENSSSCG00000004573	ENSSSCG00000035016	ENSSSCG00000004572
Chacoan peccary	MODERN SPECIES	190									ALDH1A2 (ENSCWAG00000007109) #15	AQP9 (ENSCWAG00000007410) #16	LIPC (ENSCWAG00000007495) #17	ADAM10 (ENSCWAG00000007713) #18	MINDY2 (ENSCWAG00000000066) #19	SLTM (ENSCWAG00000000113) #20	RNF111 (ENSCWAG00000000151) #21	CCNB2 (ENSCWAG00000000194) #22	MYO1E (ENSCWAG00000000231) #24	FAM81A (ENSCWAG00000000260) #25	GCNT3 (ENSCWAG00000000278) #26	GTF2A2 (ENSCWAG00000000294)	BNIP2 (ENSCWAG00000000316) #27	FOXB1 (ENSCWAG00000000336) #28
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Cetacea	ANCESTRAL SPECIES	2	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.fb	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00390000015537.v.a.b.b	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00960000192699	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.fb	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00390000015537.v.a.b.b	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37
Sperm whale	DUPLICATION
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	2	MNS1 (ENSPCTG00005004828) #8	ZNF280D (ENSPCTG00005004865) #9	ENSPCTG00005004946	TCF12 (ENSPCTG00005005020) #10	CGNL1 (ENSPCTG00005005300) #11	MYZAP (ENSPCTG00005005348) #12	POLR2M (ENSPCTG00005005433) #13	ALDH1A2 (ENSPCTG00005005493) #15	AQP9 (ENSPCTG00005005660) #16	LIPC (ENSPCTG00005005721) #17	ADAM10 (ENSPCTG00005005786) #18	MINDY2 (ENSPCTG00005006000) #19	ENSPCTG00005006055	SLTM (ENSPCTG00005006094) #20	RNF111 (ENSPCTG00005006164) #21	CCNB2 (ENSPCTG00005008748) #22	MYO1E (ENSPCTG00005008840) #24	FAM81A (ENSPCTG00005009006) #25	GCNT3 (ENSPCTG00005009050) #26	GTF2A2 (ENSPCTG00005009084)	BNIP2 (ENSPCTG00005009246) #27	FOXB1 (ENSPCTG00005009501) #28	ANXA2 (ENSPCTG00005009521) ##29	ICE2 (ENSPCTG00005009584) #30	RORA (ENSPCTG00005009731) #31	ENSPCTG00005009916	VPS13C (ENSPCTG00005010003) #32	ENSPCTG00005010262	ENSPCTG00005010311	TLN2 (ENSPCTG00005010395) #37	TPM1 (ENSPCTG00005010565)
Sperm whale	MODERN SPECIES	11	MBD3 (ENSPCTG00005019289)	MRPL54 (ENSPCTG00005019236)	APBA3 (ENSPCTG00005019206)	ENSPCTG00005019177	ENSPCTG00005019154	PIP5K1C (ENSPCTG00005019009)	TLE2 (ENSPCTG00005018210)	TLE5 (ENSPCTG00005018020)	ENSPCTG00005017955	DOHH (ENSPCTG00005017916)	SMIM24 (ENSPCTG00005017813)	NFIC (ENSPCTG00005017610)	ENSPCTG00005017573	ENSPCTG00005017562	ZNF555 (ENSPCTG00005017508)	ENSPCTG00005017499 #22	RAX2 (ENSPCTG00005017465)	MATK (ENSPCTG00005017055)	ENSPCTG00005017007	ENSPCTG00005016973	ATCAY (ENSPCTG00005016906)	NMRK2 (ENSPCTG00005016732)	DAPK3 (ENSPCTG00005016679)	EEF2 (ENSPCTG00005016617)	PIAS4 (ENSPCTG00005016559)	CREB3L3 (ENSPCTG00005016528)	SIRT6 (ENSPCTG00005016278)	ENSPCTG00005016256	YJU2 (ENSPCTG00005016179)	SHD (ENSPCTG00005016052)	FSD1 (ENSPCTG00005015759)
Sperm whale	MODERN SPECIES	5	MAP3K14 (ENSPCTG00005014939)	ARHGAP27 (ENSPCTG00005014993)	ENSPCTG00005015310	RDM1 (ENSPCTG00005015356)	LYZL6 (ENSPCTG00005015532)	ENSPCTG00005015570	RPRML (ENSPCTG00005015584)	GOSR2 (ENSPCTG00005015631)	WNT9B (ENSPCTG00005016233)	WNT3 (ENSPCTG00005016337)	NSF (ENSPCTG00005016413)	ENSPCTG00005016474	ENSPCTG00005016519	ENSPCTG00005016576	KANSL1 (ENSPCTG00005016850)	ENSPCTG00005017051 #22	ENSPCTG00005017099	CDC27 (ENSPCTG00005017181)	MYL4 (ENSPCTG00005017300)	ITGB3 (ENSPCTG00005017389)	ENSPCTG00005017460	EFCAB3 (ENSPCTG00005017505)	METTL2A (ENSPCTG00005017723)	TLK2 (ENSPCTG00005017878)	ENSPCTG00005008823	MARCH10 (ENSPCTG00005008874)	TANC2 (ENSPCTG00005009102)	CYB561 (ENSPCTG00005009445)	ACE (ENSPCTG00005009598)	ENSPCTG00005009761	TACO1 (ENSPCTG00005009791)
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00910000148328	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.fb	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00390000015537.v.a.b.b	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00910000147045	ENSGT00940000154699 #37
Dolphin	MODERN SPECIES	3213										AQP9 (ENSTTRG00000005159) #16	LIPC (ENSTTRG00000005183) #17	ADAM10 (ENSTTRG00000005205) #18	MINDY2 (ENSTTRG00000005227) #19	SLTM (ENSTTRG00000005246) #20	RNF111 (ENSTTRG00000005259) #21	CCNB2 (ENSTTRG00000005262) #22	MYO1E (ENSTTRG00000005265) #24
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00500000044920.h	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.fb	ENSGT00940000158531 #27	ENSGT00940000154576.s.b	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00940000153096.b.c.b.a.b.b.a.a.a	ENSGT00390000015537.v.a.b.b	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g
Vaquita	MODERN SPECIES	11	TEX9 (ENSPSNG00000002550) #7	MNS1 (ENSPSNG00000002522) #8	ZNF280D (ENSPSNG00000002413) #9	TCF12 (ENSPSNG00000002365) #10	CGNL1 (ENSPSNG00000002273) #11	MYZAP (ENSPSNG00000002163) #12	POLR2M (ENSPSNG00000002108) #13	ALDH1A2 (ENSPSNG00000002037) #15	AQP9 (ENSPSNG00000001984) #16	LIPC (ENSPSNG00000001932) #17	ADAM10 (ENSPSNG00000001884) #18	MINDY2 (ENSPSNG00000001818) #19	SLTM (ENSPSNG00000001794) #20	RNF111 (ENSPSNG00000001766) #21	ENSPSNG00000001751	CCNB2 (ENSPSNG00000001729) #22	MYO1E (ENSPSNG00000001661) #24	FAM81A (ENSPSNG00000001585) #25	GCNT3 (ENSPSNG00000001564) #26	ENSPSNG00000001542	BNIP2 (ENSPSNG00000001478) #27	ENSPSNG00000001436	FOXB1 (ENSPSNG00000001422) #28	ANXA2 (ENSPSNG00000001393) ##29	ICE2 (ENSPSNG00000001344) #30	ENSPSNG00000001324	RORA (ENSPSNG00000001296) #31	ENSPSNG00000001268	VPS13C (ENSPSNG00000001057) #32	ENSPSNG00000000958	ENSPSNG00000000941
Monodontidae	ANCESTRAL SPECIES	27	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00500000044920.h	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572.fb	ENSGT00940000158531 #27	ENSGT00940000154576.s.b	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00940000153096.b.c.b.a.b.b.a.a.a	ENSGT00390000015537.v.a.b.b	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g
Narwhal	MODERN SPECIES	308	TEX9 (ENSMMNG00015008497) #7	MNS1 (ENSMMNG00015008552) #8	ZNF280D (ENSMMNG00015008588) #9	TCF12 (ENSMMNG00015008652) #10	CGNL1 (ENSMMNG00015008737) #11	MYZAP (ENSMMNG00015008782) #12	POLR2M (ENSMMNG00015008834) #13	ALDH1A2 (ENSMMNG00015008867) #15	AQP9 (ENSMMNG00015008896) #16	LIPC (ENSMMNG00015008926) #17	ADAM10 (ENSMMNG00015008952) #18	MINDY2 (ENSMMNG00015008982) #19	SLTM (ENSMMNG00015009010) #20	RNF111 (ENSMMNG00015009033) #21	ENSMMNG00015009045	CCNB2 (ENSMMNG00015009062) #22	MYO1E (ENSMMNG00015009083) #24	FAM81A (ENSMMNG00015009117) #25	GCNT3 (ENSMMNG00015009131) #26	ENSMMNG00015009139	BNIP2 (ENSMMNG00015009206) #27	ENSMMNG00015009251	FOXB1 (ENSMMNG00015009255) #28	ANXA2 (ENSMMNG00015009260) ##29	ICE2 (ENSMMNG00015009274) #30	RORA (ENSMMNG00015009290) #31	ENSMMNG00015009303	ENSMMNG00015009305	VPS13C (ENSMMNG00015009472) #32	ENSMMNG00015009789	TLN2 (ENSMMNG00015009817) #37
Beluga whale	MODERN SPECIES	20	MNS1 (ENSDLEG00000011429) #8	ZNF280D (ENSDLEG00000011456) #9	TCF12 (ENSDLEG00000011499) #10	CGNL1 (ENSDLEG00000011635) #11	MYZAP (ENSDLEG00000011677) #12	POLR2M (ENSDLEG00000011717) #13	ALDH1A2 (ENSDLEG00000011724) #15	AQP9 (ENSDLEG00000011745) #16	LIPC (ENSDLEG00000011760) #17	ADAM10 (ENSDLEG00000011799) #18	MINDY2 (ENSDLEG00000011823) #19	ENSDLEG00000011841	SLTM (ENSDLEG00000011855) #20	RNF111 (ENSDLEG00000011891) #21	ENSDLEG00000011930	CCNB2 (ENSDLEG00000011945) #22	MYO1E (ENSDLEG00000011982) #24	FAM81A (ENSDLEG00000012090) #25	ENSDLEG00000012103	GCNT3 (ENSDLEG00000012113) #26	GTF2A2 (ENSDLEG00000012117)	BNIP2 (ENSDLEG00000012134) #27	ENSDLEG00000012193	FOXB1 (ENSDLEG00000012206) #28	ANXA2 (ENSDLEG00000012217) ##29	ENSDLEG00000012242	ICE2 (ENSDLEG00000000261) #30	RORA (ENSDLEG00000000324) #31	ENSDLEG00000000365	ENSDLEG00000000383	VPS13C (ENSDLEG00000000606) #32
Blue whale	MODERN SPECIES	11	MNS1 (ENSBMSG00010002770) #8	ENSBMSG00010002765	ENSBMSG00010002756 #9	ENSBMSG00010002738	TCF12 (ENSBMSG00010002642) #10	CGNL1 (ENSBMSG00010002567) #11	MYZAP (ENSBMSG00010002466) #12	ENSBMSG00010002414 #13	ALDH1A2 (ENSBMSG00010002264) #15	AQP9 (ENSBMSG00010002216) #16	LIPC (ENSBMSG00010002097) #17	ADAM10 (ENSBMSG00010002053) #18	MINDY2 (ENSBMSG00010002021) #19	SLTM (ENSBMSG00010001996) #20	RNF111 (ENSBMSG00010001868) #21	CCNB2 (ENSBMSG00010001737) #22	MYO1E (ENSBMSG00010001489) #24	FAM81A (ENSBMSG00010001446) #25	ENSBMSG00010001413	BNIP2 (ENSBMSG00010001392) #27	FOXB1 (ENSBMSG00010001373) #28	ENSBMSG00010001360 ##29	ICE2 (ENSBMSG00010001345) #30	RORA (ENSBMSG00010001304) #31	ENSBMSG00010001281	VPS13C (ENSBMSG00010001188) #32	ENSBMSG00010001099	ENSBMSG00010001086	TLN2 (ENSBMSG00010001027) #37	TPM1 (ENSBMSG00010000776)	LACTB (ENSBMSG00010000701)
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	6	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Percora_a	ANCESTRAL SPECIES	8	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Bovidae	ANCESTRAL SPECIES	7	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000012916.y.a.b
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000015813.g.d	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT00390000001062.e	ENSGT00950000182891.a.a.a
Bos	ANCESTRAL SPECIES	13	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000015813.g.d	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT00390000012916.y.a.b
Bos_a	ANCESTRAL SPECIES	53	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000015813.g.d	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT00390000012916.y.a.b
Wild yak	MODERN SPECIES	283										LIPC (ENSBMUG00000004247) #17	ADAM10 (ENSBMUG00000004283) #18	ENSBMUG00000004290	MINDY2 (ENSBMUG00000004308) #19	SLTM (ENSBMUG00000004937) #20	RNF111 (ENSBMUG00000005930) #21	CCNB2 (ENSBMUG00000005975) #22	MYO1E (ENSBMUG00000005995) #24
Domestic yak	MODERN SPECIES	2	TCF12 (ENSBGRG00000012739) #10	CGNL1 (ENSBGRG00000012540) #11	MYZAP (ENSBGRG00000011974) #12	POLR2M (ENSBGRG00000011811) #13	ALDH1A2 (ENSBGRG00000011324) #15	AQP9 (ENSBGRG00000011032) #16	LIPC (ENSBGRG00000010472) #17	ADAM10 (ENSBGRG00000010308) #18	ENSBGRG00000010264	MINDY2 (ENSBGRG00000010110) #19	SLTM (ENSBGRG00000009817) #20	ENSBGRG00000009782	ENSBGRG00000009765	ENSBGRG00000009750	RNF111 (ENSBGRG00000009659) #21	ENSBGRG00000009460 #22	ENSBGRG00000009430	MYO1E (ENSBGRG00000008828) #24	FAM81A (ENSBGRG00000008720) #25	ENSBGRG00000008693	GCNT3 (ENSBGRG00000008683) #26	ENSBGRG00000008564	BNIP2 (ENSBGRG00000008392) #27	FOXB1 (ENSBGRG00000008353) #28	ANXA2 (ENSBGRG00000008299) ##29	ICE2 (ENSBGRG00000008178) #30	ENSBGRG00000008149	ENSBGRG00000008135	RORA (ENSBGRG00000007990) #31	ENSBGRG00000007967	VPS13C (ENSBGRG00000004877) #32
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000015813.g.d	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.a.b.b.a.a.a.b.b.b	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT00390000012916.y.a.b
Cow	MODERN SPECIES	1	ENSBTAG00000052391 #9	ENSBTAG00000053119 #10	TCF12 (ENSBTAG00000002586) #10	CGNL1 (ENSBTAG00000008575) #11	MYZAP (ENSBTAG00000002194) #12	POLR2M (ENSBTAG00000040384) #13	ALDH1A2 (ENSBTAG00000010119) #15	AQP9 (ENSBTAG00000013452) #16	ENSBTAG00000049039	LIPC (ENSBTAG00000005479) #17	ADAM10 (ENSBTAG00000005481) #18	ENSBTAG00000049189	MINDY2 (ENSBTAG00000012391) #19	SLTM (ENSBTAG00000011319) #20	RNF111 (ENSBTAG00000014181) #21	CCNB2 (ENSBTAG00000005269) #22	MYO1E (ENSBTAG00000021538) #24	FAM81A (ENSBTAG00000014699) #25	GCNT3 (ENSBTAG00000009443) #26	GTF2A2 (ENSBTAG00000010298)	BNIP2 (ENSBTAG00000013493) #27	FOXB1 (ENSBTAG00000019114) #28	ANXA2 (ENSBTAG00000009615) ##29	ICE2 (ENSBTAG00000005328) #30	RORA (ENSBTAG00000015904) #31	VPS13C (ENSBTAG00000038920) #32	ENSBTAG00000010952	C2CD4B (ENSBTAG00000020814)	TLN2 (ENSBTAG00000003667) #37	ENSBTAG00000040590	TPM1 (ENSBTAG00000005373)
Hybrid Bos Indicus	MODERN SPECIES	1	MNS1 (ENSBIXG00005018404) #8	ENSBIXG00005018423	ZNF280D (ENSBIXG00005018538) #9	TCF12 (ENSBIXG00005018770) #10	CGNL1 (ENSBIXG00005018869) #11	MYZAP (ENSBIXG00005019030) #12	POLR2M (ENSBIXG00005019093) #13	ALDH1A2 (ENSBIXG00005019214) #15	AQP9 (ENSBIXG00005019291) #16	LIPC (ENSBIXG00005003152) #17	ADAM10 (ENSBIXG00005019471) #18	ENSBIXG00005019503	MINDY2 (ENSBIXG00005019539) #19	SLTM (ENSBIXG00005003196) #20	RNF111 (ENSBIXG00005019694) #21	CCNB2 (ENSBIXG00005019754) #22	MYO1E (ENSBIXG00005019811) #24	FAM81A (ENSBIXG00005005864) #25	ENSBIXG00005019886	GCNT3 (ENSBIXG00005019900) #26	GTF2A2 (ENSBIXG00005003264)	BNIP2 (ENSBIXG00005020028) #27	FOXB1 (ENSBIXG00005003289) #28	ANXA2 (ENSBIXG00005020120) ##29	ENSBIXG00005020130	ICE2 (ENSBIXG00005020165) #30	RORA (ENSBIXG00005020235) #31	VPS13C (ENSBIXG00005020334) #32	ENSBIXG00005020414	ENSBIXG00005003454	TLN2 (ENSBIXG00005020508) #37
American bison	MODERN SPECIES	3000	ENSBBBG00000014604	MNS1 (ENSBBBG00000014599) #8	ZNF280D (ENSBBBG00000014586) #9	TCF12 (ENSBBBG00000009128) #10	CGNL1 (ENSBBBG00000014380) #11	MYZAP (ENSBBBG00000014366) #12	POLR2M (ENSBBBG00000014311) #13	ALDH1A2 (ENSBBBG00000014299) #15	AQP9 (ENSBBBG00000014231) #16	LIPC (ENSBBBG00000002888) #17	ADAM10 (ENSBBBG00000014183) #18	ENSBBBG00000014172	MINDY2 (ENSBBBG00000014166) #19	SLTM (ENSBBBG00000003203) #20	RNF111 (ENSBBBG00000003193) #21	CCNB2 (ENSBBBG00000014120) #22	MYO1E (ENSBBBG00000014100) #24	FAM81A (ENSBBBG00000003145) #25	GCNT3 (ENSBBBG00000003138) #26	GTF2A2 (ENSBBBG00000014065)	BNIP2 (ENSBBBG00000003121) #27
Caprinae	ANCESTRAL SPECIES	11	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405.hb #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.h	ENSGT00940000162206.g	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000012916.y.a.b
Goat	MODERN SPECIES	1	TEX9 (ENSCHIG00000016001) #7	MNS1 (ENSCHIG00000011779) #8	ZNF280D (ENSCHIG00000021583) #9	TCF12 (ENSCHIG00000008569) #10	CGNL1 (ENSCHIG00000012395) #11	MYZAP (ENSCHIG00000010101) #12	POLR2M (ENSCHIG00000000701) #13	ALDH1A2 (ENSCHIG00000025960) #15	AQP9 (ENSCHIG00000018286) #16	LIPC (ENSCHIG00000026829) #17	ADAM10 (ENSCHIG00000007232) #18	ENSCHIG00000004124	MINDY2 (ENSCHIG00000008343) #19	SLTM (ENSCHIG00000008780) #20	RNF111 (ENSCHIG00000023723) #21	CCNB2 (ENSCHIG00000014721) #22	MYO1E (ENSCHIG00000013110) #24	FAM81A (ENSCHIG00000015814) #25	GCNT3 (ENSCHIG00000009946) #26	GTF2A2 (ENSCHIG00000015247)	ENSCHIG00000004630	BNIP2 (ENSCHIG00000025922) #27	FOXB1 (ENSCHIG00000008336) #28	ENSCHIG00000017509	ENSCHIG00000006134 ##29	ICE2 (ENSCHIG00000025114) #30	RORA (ENSCHIG00000025775) #31	VPS13C (ENSCHIG00000021131) #32	ENSCHIG00000026417	ENSCHIG00000009551	ENSCHIG00000024274
Rambouillet Sheep	MODERN SPECIES	23	MNS1 (ENSOARG00020023210) #8	ZNF280D (ENSOARG00020022968) #9	TCF12 (ENSOARG00020022679) #10	ENSOARG00020022647	CGNL1 (ENSOARG00020022386) #11	MYZAP (ENSOARG00020022259) #12	POLR2M (ENSOARG00020022191) #13	ALDH1A2 (ENSOARG00020021892) #15	AQP9 (ENSOARG00020021823) #16	ENSOARG00020021759	LIPC (ENSOARG00020021564) #17	ADAM10 (ENSOARG00020021312) #18	MINDY2 (ENSOARG00020021211) #19	SLTM (ENSOARG00020021163) #20	RNF111 (ENSOARG00020021012) #21	CCNB2 (ENSOARG00020020879) #22	MYO1E (ENSOARG00020020182) #24	FAM81A (ENSOARG00020020134) #25	GCNT3 (ENSOARG00020020115) #26	GTF2A2 (ENSOARG00020019984)	BNIP2 (ENSOARG00020019895) #27	FOXB1 (ENSOARG00020019859) #28	ANXA2 (ENSOARG00020019713) ##29	ICE2 (ENSOARG00020019537) #30	RORA (ENSOARG00020019090) #31	VPS13C (ENSOARG00020011169) #32	ENSOARG00020010758	TLN2 (ENSOARG00020009618) #37	TPM1 (ENSOARG00020009011)	LACTB (ENSOARG00020008870)	RPS27L (ENSOARG00020008837)
Siberian musk deer	MODERN SPECIES	257	MNS1 (ENSMMSG00000020858) #8	ZNF280D (ENSMMSG00000020750) #9	TCF12 (ENSMMSG00000020389) #10	CGNL1 (ENSMMSG00000020305) #11	MYZAP (ENSMMSG00000020205) #12	POLR2M (ENSMMSG00000020150) #13	ALDH1A2 (ENSMMSG00000019982) #15	AQP9 (ENSMMSG00000019948) #16	LIPC (ENSMMSG00000019830) #17	ADAM10 (ENSMMSG00000019713) #18	ENSMMSG00000019695	MINDY2 (ENSMMSG00000019661) #19	SLTM (ENSMMSG00000019627) #20	ENSMMSG00000019602	RNF111 (ENSMMSG00000019565) #21	ENSMMSG00000019489 #22	ENSMMSG00000019472	MYO1E (ENSMMSG00000019415) #24	FAM81A (ENSMMSG00000019367) #25	GCNT3 (ENSMMSG00000019356) #26	GTF2A2 (ENSMMSG00000019278)	BNIP2 (ENSMMSG00000019237) #27	ENSMMSG00000019221	ENSMMSG00000019194	FOXB1 (ENSMMSG00000019181) #28	ENSMMSG00000019123 ##29	ICE2 (ENSMMSG00000019040) #30	RORA (ENSMMSG00000018934) #31	VPS13C (ENSMMSG00000016146) #32	ENSMMSG00000015819	ENSMMSG00000015806
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	3	ZNF280D (ENSCHYG00000017379) #9	ENSCHYG00000017295	TCF12 (ENSCHYG00000016611) #10	ENSCHYG00000016552	ENSCHYG00000016531	CGNL1 (ENSCHYG00000016114) #11	MYZAP (ENSCHYG00000015583) #12	ALDH1A2 (ENSCHYG00000014768) #15	ENSCHYG00000014708	AQP9 (ENSCHYG00000014576) #16	LIPC (ENSCHYG00000014377) #17	ADAM10 (ENSCHYG00000014132) #18	MINDY2 (ENSCHYG00000013931) #19	SLTM (ENSCHYG00000013792) #20	RNF111 (ENSCHYG00000013657) #21	ENSCHYG00000013470 #22	MYO1E (ENSCHYG00000013289) #24	FAM81A (ENSCHYG00000013193) #25	GCNT3 (ENSCHYG00000013172) #26	GTF2A2 (ENSCHYG00000013080)	BNIP2 (ENSCHYG00000012834) #27	FOXB1 (ENSCHYG00000012800) #28	ANXA2 (ENSCHYG00000012695) ##29	ICE2 (ENSCHYG00000012586) #30	RORA (ENSCHYG00000012326) #31	VPS13C (ENSCHYG00000008027) #32	ENSCHYG00000007764	ENSCHYG00000007733	ENSCHYG00000007706	TLN2 (ENSCHYG00000007530) #37	TPM1 (ENSCHYG00000007247)
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000013676	RBM10 (ENSCHYG00000013228)	NDUFB11 (ENSCHYG00000013137)	ENSCHYG00000013120	RGN (ENSCHYG00000012997)	JADE3 (ENSCHYG00000012941)	RP2 (ENSCHYG00000012920)	ENSCHYG00000012899	SLC9A7 (ENSCHYG00000012816)	CHST7 (ENSCHYG00000012799)	EDA2R (ENSCHYG00000012702)	ENSCHYG00000012671	ENSCHYG00000012635	ENSCHYG00000012623	AR (ENSCHYG00000012242)	ENSCHYG00000012187 #22	OPHN1 (ENSCHYG00000011647)	STARD8 (ENSCHYG00000011208)	EFNB1 (ENSCHYG00000011013)	ENSCHYG00000010871	ENSCHYG00000010850	EDA (ENSCHYG00000010808)	OTUD6A (ENSCHYG00000010784)	AWAT2 (ENSCHYG00000010677)	ENSCHYG00000010617	DGAT2L6 (ENSCHYG00000010532)	ENSCHYG00000010515	AWAT1 (ENSCHYG00000010414)	ARR3 (ENSCHYG00000010125)	P2RY4 (ENSCHYG00000009899)	KIF4A (ENSCHYG00000009559)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000155405.ib #22
Percora_a	ANCESTRAL SPECIES		ENSGT00940000159531	ENSGT00390000009693.c.a	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT01030000240140	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b.k	ENSGT00940000158850	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.d.b	ENSGT00940000159345.c.a	ENSGT00940000159345.c.b.a
Bovidae	ANCESTRAL SPECIES		ENSGT00940000154245.A	ENSGT00940000159531	ENSGT00390000009693.c.a	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b.k	ENSGT00940000158850.j	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.d.b	ENSGT00940000159345.c.a	ENSGT00940000159345.c.b.a
Bovinae	ANCESTRAL SPECIES	2	ENSGT00950000185146	ENSGT00940000159531	ENSGT00390000009693.c.a.a.b	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b.k	ENSGT00940000158850.j	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A	ENSGT00940000159345.d.a.b	ENSGT00940000159345.d.b	ENSGT00940000159345.c.a
Bos	ANCESTRAL SPECIES	3	ENSGT00950000185146	ENSGT00940000159531	ENSGT00390000009693.c.a.a.b	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00500000044831.a.a.b.k	ENSGT00390000013517	ENSGT00940000158850.j	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A.g.b	ENSGT00940000159345.d.a.b	ENSGT00940000159345.d.b	ENSGT00940000159345.c.a
Bos_a	ANCESTRAL SPECIES	2	ENSGT01030000234975	ENSGT00940000159531	ENSGT00390000009693.c.a.a.b	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00390000013517	ENSGT00500000044831.a.a.b.k	ENSGT00940000158850.j	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000159345.c.a	ENSGT00940000159345.c.b.a	ENSGT00940000161609	ENSGT00940000159345.c.b.b
Domestic yak	MODERN SPECIES	27	ENSBGRG00000000592	ATP10B (ENSBGRG00000000552)	ENSBGRG00000000492	SLU7 (ENSBGRG00000000435)	FAM200C (ENSBGRG00000017873)	C1QTNF2 (ENSBGRG00000017808)	FABP6 (ENSBGRG00000017725)	PWWP2A (ENSBGRG00000017485)	TTC1 (ENSBGRG00000017355)	ADRA1B (ENSBGRG00000017305)	ENSBGRG00000017048	IL12B (ENSBGRG00000016956)	UBLCP1 (ENSBGRG00000016766)	RNF145 (ENSBGRG00000016333)	EBF1 (ENSBGRG00000015942)	ENSBGRG00000015864 #22	CLINT1 (ENSBGRG00000015659)	LSM11 (ENSBGRG00000015580)	THG1L (ENSBGRG00000015516)	SOX30 (ENSBGRG00000015400)	ADAM19 (ENSBGRG00000015117)	NIPAL4 (ENSBGRG00000015077)	FNDC9 (ENSBGRG00000015053)	CYFIP2 (ENSBGRG00000014210)	ITK (ENSBGRG00000013958)	GARIN3 (ENSBGRG00000013910)	MED7 (ENSBGRG00000013891)	ENSBGRG00000013868	ENSBGRG00000013840	ENSBGRG00000013748	ENSBGRG00000013704
Bos_b	ANCESTRAL SPECIES	2	ENSGT00950000185146	ENSGT00940000159531	ENSGT00390000009693.c.a.a.b	ENSGT00390000002292.b	ENSGT00940000163112	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000010107	ENSGT00940000157281	ENSGT00950000182859.A.a.b.b	ENSGT00940000155405.ib #22	ENSGT00940000155650	ENSGT00390000012944	ENSGT00390000011705	ENSGT00940000161042	ENSGT00940000159624	ENSGT00940000159087	ENSGT00500000044831.a.a.b.k	ENSGT00390000013517	ENSGT00940000158850.j	ENSGT00940000162063	ENSGT00940000154444.B	ENSGT00940000154444.A.g.b	ENSGT00940000159345.d.a.b.a	ENSGT00940000159345.d.a.b.b	ENSGT00940000159345.d.b
Cow	MODERN SPECIES	26	PTTG1 (ENSBTAG00000012184)	SLU7 (ENSBTAG00000008457)	FAM200C (ENSBTAG00000030282)	C1QTNF2 (ENSBTAG00000054287)	CCNJL (ENSBTAG00000046343)	FABP6 (ENSBTAG00000010632)	ENSBTAG00000053260	PWWP2A (ENSBTAG00000010341)	TTC1 (ENSBTAG00000010321)	ADRA1B (ENSBTAG00000040253)	ENSBTAG00000050222	IL12B (ENSBTAG00000004741)	UBLCP1 (ENSBTAG00000009103)	RNF145 (ENSBTAG00000025099)	EBF1 (ENSBTAG00000037508)	ENSBTAG00000050321 #22	CLINT1 (ENSBTAG00000016199)	LSM11 (ENSBTAG00000010363)	THG1L (ENSBTAG00000010359)	SOX30 (ENSBTAG00000020491)	ADAM19 (ENSBTAG00000003836)	NIPAL4 (ENSBTAG00000020213)	CYFIP2 (ENSBTAG00000008916)	ITK (ENSBTAG00000000306)	GARIN3 (ENSBTAG00000013450)	MED7 (ENSBTAG00000050263)	HAVCR2 (ENSBTAG00000000495)	ENSBTAG00000036102	ENSBTAG00000052849	TIMD4 (ENSBTAG00000013185)	ENSBTAG00000030297
Siberian musk deer	MODERN SPECIES	64	FAM200C (ENSMMSG00000005473)	ENSMMSG00000005454	C1QTNF2 (ENSMMSG00000005413)	CCNJL (ENSMMSG00000005397)	FABP6 (ENSMMSG00000005362)	PWWP2A (ENSMMSG00000005304)	TTC1 (ENSMMSG00000005250)	ADRA1B (ENSMMSG00000005230)	ENSMMSG00000005198	ENSMMSG00000005162	IL12B (ENSMMSG00000005127)	UBLCP1 (ENSMMSG00000005080)	RNF145 (ENSMMSG00000004942)	ENSMMSG00000004886	EBF1 (ENSMMSG00000004757)	ENSMMSG00000004165 #22	CLINT1 (ENSMMSG00000004140)	LSM11 (ENSMMSG00000004127)	THG1L (ENSMMSG00000004121)	SOX30 (ENSMMSG00000004081)	ADAM19 (ENSMMSG00000004015)	NIPAL4 (ENSMMSG00000003992)	FNDC9 (ENSMMSG00000003985)	CYFIP2 (ENSMMSG00000003916)	ITK (ENSMMSG00000003869)	GARIN3 (ENSMMSG00000003849)	MED7 (ENSMMSG00000003843)	HAVCR2 (ENSMMSG00000003829)	ENSMMSG00000003817	ENSMMSG00000003800	ENSMMSG00000003791
Camelidae	ANCESTRAL SPECIES	23	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Arabian camel	MODERN SPECIES	32	TEX9 (ENSCDRG00005014221) #7	MNS1 (ENSCDRG00005014157) #8	ZNF280D (ENSCDRG00005013979) #9	TCF12 (ENSCDRG00005013440) #10	CGNL1 (ENSCDRG00005013208) #11	MYZAP (ENSCDRG00005012933) #12	POLR2M (ENSCDRG00005012854) #13	AQP9 (ENSCDRG00005012783) #16	ALDH1A2 (ENSCDRG00005012276) #15	LIPC (ENSCDRG00005012154) #17	ADAM10 (ENSCDRG00005011988) #18	ENSCDRG00005011957	MINDY2 (ENSCDRG00005011843) #19	SLTM (ENSCDRG00005011603) #20	RNF111 (ENSCDRG00005011330) #21	CCNB2 (ENSCDRG00005011168) #22	MYO1E (ENSCDRG00005010981) #24	FAM81A (ENSCDRG00005010891) #25	GCNT3 (ENSCDRG00005010851) #26	GTF2A2 (ENSCDRG00005010692)	BNIP2 (ENSCDRG00005010618) #27	FOXB1 (ENSCDRG00005010590) #28	ENSCDRG00005010380 ##29	ICE2 (ENSCDRG00005010259) #30	RORA (ENSCDRG00005010112) #31	VPS13C (ENSCDRG00005009482) #32	ENSCDRG00005009161	TLN2 (ENSCDRG00005008648) #37	TPM1 (ENSCDRG00005006508)	ENSCDRG00005006370	ENSCDRG00005004006
Alpaca	MODERN SPECIES	1313															RNF111 (ENSVPAG00000012478) #21	CCNB2 (ENSVPAG00000012481) #22	MYO1E (ENSVPAG00000012482) #24
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Carnivora	ANCESTRAL SPECIES		ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921	ENSGT00390000001062
Caniformia	ANCESTRAL SPECIES	12	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j.mb ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Ursidae	ANCESTRAL SPECIES	21	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898.j.a #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j.mb ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000154699.f #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Ursus	ANCESTRAL SPECIES	73	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898.j.a #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000161970	ENSGT00940000154257.j.mb ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000154699.f #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
American black bear	MODERN SPECIES	2332														ENSUAMG00000006773 #20	RNF111 (ENSUAMG00000006769) #21	CCNB2 (ENSUAMG00000006755) #22	MYO1E (ENSUAMG00000006435) #24
Polar bear	MODERN SPECIES	282	RFX7 (ENSUMAG00000023577)	TEX9 (ENSUMAG00000023578) #7	MNS1 (ENSUMAG00000023585) #8	ZNF280D (ENSUMAG00000023594) #9	TCF12 (ENSUMAG00000023601) #10	CGNL1 (ENSUMAG00000023607) #11	MYZAP (ENSUMAG00000023621) #12	POLR2M (ENSUMAG00000023632) #13	ALDH1A2 (ENSUMAG00000023636) #15	AQP9 (ENSUMAG00000023641) #16	LIPC (ENSUMAG00000023645) #17	ADAM10 (ENSUMAG00000023649) #18	MINDY2 (ENSUMAG00000023650) #19	SLTM (ENSUMAG00000023678) #20	RNF111 (ENSUMAG00000023950) #21	CCNB2 (ENSUMAG00000023954) #22	MYO1E (ENSUMAG00000023955) #24	FAM81A (ENSUMAG00000023957) #25	GCNT3 (ENSUMAG00000023958) #26	GTF2A2 (ENSUMAG00000023959)	BNIP2 (ENSUMAG00000023960) #27	ENSUMAG00000023966	ENSUMAG00000023968 ##29	ICE2 (ENSUMAG00000023974) #30	RORA (ENSUMAG00000023981) #31	ENSUMAG00000023995	VPS13C (ENSUMAG00000024057) #32	TLN2 (ENSUMAG00000024313) #37	TPM1 (ENSUMAG00000024489)	LACTB (ENSUMAG00000024551)	ENSUMAG00000024552
Giant Panda	MODERN SPECIES	15	MNS1 (ENSAMEG00000003083) #8	ZNF280D (ENSAMEG00000003065) #9	ENSAMEG00000026462	TCF12 (ENSAMEG00000010612) #10	CGNL1 (ENSAMEG00000010575) #11	MYZAP (ENSAMEG00000010550) #12	ENSAMEG00000026876 #13	AQP9 (ENSAMEG00000010516) #16	ENSAMEG00000010508	ENSAMEG00000010535 #15	LIPC (ENSAMEG00000003097) #17	ADAM10 (ENSAMEG00000003056) #18	MINDY2 (ENSAMEG00000026245) #19	SLTM (ENSAMEG00000004537) #20	RNF111 (ENSAMEG00000004568) #21	CCNB2 (ENSAMEG00000004603) #22	MYO1E (ENSAMEG00000004643) #24	FAM81A (ENSAMEG00000004782) #25	GCNT3 (ENSAMEG00000018673) #26	GTF2A2 (ENSAMEG00000005744)	BNIP2 (ENSAMEG00000005709) #27	FOXB1 (ENSAMEG00000019472) #28	ENSAMEG00000008055 ##29	ICE2 (ENSAMEG00000008039) #30	RORA (ENSAMEG00000008017) #31	ENSAMEG00000017453	VPS13C (ENSAMEG00000017363) #32	TLN2 (ENSAMEG00000012004) #37	ENSAMEG00000007224	LACTB (ENSAMEG00000007262)	RPS27L (ENSAMEG00000007270)
Mustelinae	ANCESTRAL SPECIES	57	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25
American mink	MODERN SPECIES	132	ENSNVIG00000001115	TCF12 (ENSNVIG00000000931) #10	CGNL1 (ENSNVIG00000000923) #11	MYZAP (ENSNVIG00000000857) #12	GRL1A (ENSNVIG00000000834) #13	AQP9 (ENSNVIG00000000811) #16	AL1A2 (ENSNVIG00000000690) #15	LIPC (ENSNVIG00000000464) #17	ADA10 (ENSNVIG00000000408) #18	ENSNVIG00000000402	MINDY2 (ENSNVIG00000000373) #19	SLTM (ENSNVIG00000000365) #20	ENSNVIG00000000361 #20	ENSNVIG00000000355	RNF111 (ENSNVIG00000000316) #21	CCNB2 (ENSNVIG00000000283) #22	MYO1E (ENSNVIG00000000225) #24	FAM81A (ENSNVIG00000000188) #25	ENSNVIG00000000181
Ferret	MODERN SPECIES	403				TCF12 (ENSMPUG00000004438) #10	CGNL1 (ENSMPUG00000004423) #11	MYZAP (ENSMPUG00000004417) #12	POLR2M (ENSMPUG00000004414) #13	ALDH1A2 (ENSMPUG00000004407) #15	AQP9 (ENSMPUG00000004398) #16	ENSMPUG00000004389	LIPC (ENSMPUG00000004381) #17	ADAM10 (ENSMPUG00000004375) #18	MINDY2 (ENSMPUG00000004320) #19	SLTM (ENSMPUG00000004229) #20	RNF111 (ENSMPUG00000004214) #21	CCNB2 (ENSMPUG00000004129) #22	MYO1E (ENSMPUG00000004116) #24	FAM81A (ENSMPUG00000004110) #25
Canidae	ANCESTRAL SPECIES	15	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921.b
Canis_lupus	ANCESTRAL SPECIES	17	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00390000006696.bb	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j.ob ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT01070000253911	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00950000184921.b
Dingo	MODERN SPECIES	205	ZNF280D (ENSCAFG00020012271) #9	ENSCAFG00020012249 #10	ENSCAFG00020012159 #10	CGNL1 (ENSCAFG00020011993) #11	ENSCAFG00020011988	MYZAP (ENSCAFG00020011984) #12	POLR2M (ENSCAFG00020011980) #13	ALDH1A2 (ENSCAFG00020011975) #15	ENSCAFG00020011974	AQP9 (ENSCAFG00020011973) #16	LIPC (ENSCAFG00020011968) #17	ADAM10 (ENSCAFG00020011960) #18	MINDY2 (ENSCAFG00020011948) #19	SLTM (ENSCAFG00020011253) #20	RNF111 (ENSCAFG00020011102) #21	CCNB2 (ENSCAFG00020011050) #22	MYO1E (ENSCAFG00020011013) #24	FAM81A (ENSCAFG00020010984) #25	GCNT3 (ENSCAFG00020010978) #26	GTF2A2 (ENSCAFG00020010969)	BNIP2 (ENSCAFG00020010953) #27	FOXB1 (ENSCAFG00020010944) #28	ENSCAFG00020010905 ##29	ICE2 (ENSCAFG00020010796) #30	RORA (ENSCAFG00020010743) #31	ENSCAFG00020010727	VPS13C (ENSCAFG00020010673) #32	TLN2 (ENSCAFG00020009609) #37	ENSCAFG00020009531	TPM1 (ENSCAFG00020009521)	LACTB (ENSCAFG00020009493)
Dog	MODERN SPECIES	23	TEX9 (ENSCAFG00845029502) #7	MNS1 (ENSCAFG00845029645) #8	ZNF280D (ENSCAFG00845029677) #9	TCF12 (ENSCAFG00845029773) #10	CGNL1 (ENSCAFG00845029856) #11	ENSCAFG00845029942	ENSCAFG00845030020 #12	ALDH1A2 (ENSCAFG00845030136) #15	ENSCAFG00845030206	AQP9 (ENSCAFG00845015193) #16	LIPC (ENSCAFG00845015307) #17	ADAM10 (ENSCAFG00845015520) #18	MINDY2 (ENSCAFG00845015725) #19	SLTM (ENSCAFG00845015853) #20	RNF111 (ENSCAFG00845016023) #21	CCNB2 (ENSCAFG00845016098) #22	MYO1E (ENSCAFG00845016229) #24	ENSCAFG00845016391	FAM81A (ENSCAFG00845016440) #25	ENSCAFG00845016556 #26	GTF2A2 (ENSCAFG00845016636)	BNIP2 (ENSCAFG00845016807) #27	FOXB1 (ENSCAFG00845016929) #28	ANXA2 (ENSCAFG00845017171) ##29	ICE2 (ENSCAFG00845017491) #30	RORA (ENSCAFG00845017841) #31	ENSCAFG00845018067	VPS13C (ENSCAFG00845018323) #32	ENSCAFG00845019202	TLN2 (ENSCAFG00845019529) #37	TPM1 (ENSCAFG00845019944)
Red fox	MODERN SPECIES		TEX9 (ENSVVUG00000000942) #7	MNS1 (ENSVVUG00000000969) #8	ZNF280D (ENSVVUG00000001009) #9	ENSVVUG00000001065 #10	TCF12 (ENSVVUG00000001081) #10	CGNL1 (ENSVVUG00000001119) #11	MYZAP (ENSVVUG00000001200) #12	POLR2M (ENSVVUG00000001253) #13	ALDH1A2 (ENSVVUG00000001283) #15	AQP9 (ENSVVUG00000001306) #16	LIPC (ENSVVUG00000001352) #17	ADAM10 (ENSVVUG00000001386) #18	MINDY2 (ENSVVUG00000001426) #19	SLTM (ENSVVUG00000001450) #20	RNF111 (ENSVVUG00000001485) #21	CCNB2 (ENSVVUG00000001497) #22	MYO1E (ENSVVUG00000001541) #24	ENSVVUG00000001567	FAM81A (ENSVVUG00000001584) #25	GCNT3 (ENSVVUG00000001601) #26	GTF2A2 (ENSVVUG00000001625)	BNIP2 (ENSVVUG00000001765) #27	FOXB1 (ENSVVUG00000001836) #28	ENSVVUG00000001864	ANXA2 (ENSVVUG00000001871) ##29	ICE2 (ENSVVUG00000001884) #30	RORA (ENSVVUG00000001910) #31	ENSVVUG00000001953	ENSVVUG00000001972	ENSVVUG00000002002	VPS13C (ENSVVUG00000002780) #32
Felidae	ANCESTRAL SPECIES	1	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00940000164336
Panthera	ANCESTRAL SPECIES	3	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00930000152855	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Tiger	MODERN SPECIES	204				ENSPTIG00000009862 #9	TCF12 (ENSPTIG00000010407) #10	CGNL1 (ENSPTIG00000016583) #11	MYZAP (ENSPTIG00000017186) #12	POLR2M (ENSPTIG00000019395) #13	ALDH1A2 (ENSPTIG00000021049) #15	AQP9 (ENSPTIG00000016760) #16	LIPC (ENSPTIG00000017416) #17	ADAM10 (ENSPTIG00000020483) #18	MINDY2 (ENSPTIG00000021426) #19	SLTM (ENSPTIG00000021933) #20	RNF111 (ENSPTIG00000022057) #21	CCNB2 (ENSPTIG00000022086) #22	MYO1E (ENSPTIG00000002391) #24	FAM81A (ENSPTIG00000007107) #25	GTF2A2 (ENSPTIG00000008342)	BNIP2 (ENSPTIG00000010345) #27	FOXB1 (ENSPTIG00000011045) #28	ANXA2 (ENSPTIG00000011256) ##29	ICE2 (ENSPTIG00000013570) #30	RORA (ENSPTIG00000015398) #31	VPS13C (ENSPTIG00000020414) #32	TLN2 (ENSPTIG00000013165) #37	TPM1 (ENSPTIG00000020687)	LACTB (ENSPTIG00000021953)	ENSPTIG00000000664	RAB8B (ENSPTIG00000005636)	ENSPTIG00000007292
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00960000187413	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206.j	ENSGT00930000152855	ENSGT00940000162206.i	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
leopard	MODERN SPECIES	7	ENSPPRG00000004158	TCF12 (ENSPPRG00000006795) #10	ENSPPRG00000007010	CGNL1 (ENSPPRG00000007520) #11	MYZAP (ENSPPRG00000008038) #12	ENSPPRG00000008155 #13	ENSPPRG00000008593	AQP9 (ENSPPRG00000008797) #16	ALDH1A2 (ENSPPRG00000009754) #15	LIPC (ENSPPRG00000010248) #17	ADAM10 (ENSPPRG00000010697) #18	MINDY2 (ENSPPRG00000011830) #19	SLTM (ENSPPRG00000012400) #20	ENSPPRG00000022159	RNF111 (ENSPPRG00000012896) #21	CCNB2 (ENSPPRG00000013358) #22	MYO1E (ENSPPRG00000013746) #24	FAM81A (ENSPPRG00000014412) #25	GCNT3 (ENSPPRG00000022210) #26	GTF2A2 (ENSPPRG00000015117)	BNIP2 (ENSPPRG00000015819) #27	FOXB1 (ENSPPRG00000014358) #28	ANXA2 (ENSPPRG00000017032) ##29	ICE2 (ENSPPRG00000019966) #30	RORA (ENSPPRG00000025030) #31	VPS13C (ENSPPRG00000024819) #32	ENSPPRG00000014483	ENSPPRG00000024744	ENSPPRG00000024704	TLN2 (ENSPPRG00000024152) #37	ENSPPRG00000023820
lion	MODERN SPECIES	6	RFX7 (ENSPLOG00000001487)	TEX9 (ENSPLOG00000001413) #7	MNS1 (ENSPLOG00000001293) #8	ZNF280D (ENSPLOG00000001244) #9	TCF12 (ENSPLOG00000001054) #10	CGNL1 (ENSPLOG00000000873) #11	MYZAP (ENSPLOG00000000827) #12	POLR2M (ENSPLOG00000000778) #13	AQP9 (ENSPLOG00000000752) #16	ALDH1A2 (ENSPLOG00000000630) #15	LIPC (ENSPLOG00000000384) #17	ADAM10 (ENSPLOG00000020025) #18	MINDY2 (ENSPLOG00000019972) #19	SLTM (ENSPLOG00000019866) #20	RNF111 (ENSPLOG00000019792) #21	CCNB2 (ENSPLOG00000019712) #22	MYO1E (ENSPLOG00000019658) #24	FAM81A (ENSPLOG00000019602) #25	GCNT3 (ENSPLOG00000019578) #26	GTF2A2 (ENSPLOG00000019533)	BNIP2 (ENSPLOG00000019485) #27	FOXB1 (ENSPLOG00000019463) #28	ANXA2 (ENSPLOG00000019362) ##29	ICE2 (ENSPLOG00000019330) #30	RORA (ENSPLOG00000019217) #31	VPS13C (ENSPLOG00000016750) #32	ENSPLOG00000016384	ENSPLOG00000016368	TLN2 (ENSPLOG00000015663) #37	TPM1 (ENSPLOG00000015292)	LACTB (ENSPLOG00000015093)
Cat	MODERN SPECIES	237	RFX7 (ENSFCAG00000029408)	ENSFCAG00000045000	TEX9 (ENSFCAG00000008935) #7	MNS1 (ENSFCAG00000042011) #8	ZNF280D (ENSFCAG00000030645) #9	TCF12 (ENSFCAG00000031674) #10	CGNL1 (ENSFCAG00000018538) #11	MYZAP (ENSFCAG00000014906) #12	POLR2M (ENSFCAG00000041205) #13	AQP9 (ENSFCAG00000028244) #16	ALDH1A2 (ENSFCAG00000033553) #15	LIPC (ENSFCAG00000008009) #17	MINDY2 (ENSFCAG00000025467) #19	ADAM10 (ENSFCAG00000023688) #20	RNF111 (ENSFCAG00000009412) #21	CCNB2 (ENSFCAG00000009413) #22	MYO1E (ENSFCAG00000009414) #24	FAM81A (ENSFCAG00000022356) #25	GCNT3 (ENSFCAG00000012912) #26	GTF2A2 (ENSFCAG00000012914)	BNIP2 (ENSFCAG00000012916) #27	FOXB1 (ENSFCAG00000026520) #28	ANXA2 (ENSFCAG00000007862) ##29	ICE2 (ENSFCAG00000024442) #30	RORA (ENSFCAG00000013642) #31	VPS13C (ENSFCAG00000026881) #32	ENSFCAG00000040967	TLN2 (ENSFCAG00000007306) #37	TPM1 (ENSFCAG00000037855)	LACTB (ENSFCAG00000027796)	ENSFCAG00000033932
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.b.l	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Chiroptera	ANCESTRAL SPECIES	17	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Microchiroptera	ANCESTRAL SPECIES	20	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00960000192699	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00930000152855	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a
Greater horseshoe bat	MODERN SPECIES	24	MNS1 (ENSRFEG00010015563) #8	ZNF280D (ENSRFEG00010015417) #9	TCF12 (ENSRFEG00010015112) #10	CGNL1 (ENSRFEG00010015008) #11	MYZAP (ENSRFEG00010014850) #12	POLR2M (ENSRFEG00010014706) #13	AQP9 (ENSRFEG00010014557) #16	ALDH1A2 (ENSRFEG00010014030) #15	LIPC (ENSRFEG00010013904) #17	ADAM10 (ENSRFEG00010013728) #18	ENSRFEG00010013690	MINDY2 (ENSRFEG00010013660) #19	SLTM (ENSRFEG00010013490) #20	ENSRFEG00010013430	RNF111 (ENSRFEG00010013280) #21	CCNB2 (ENSRFEG00010013118) #22	MYO1E (ENSRFEG00010013049) #24	FAM81A (ENSRFEG00010012996) #25	GCNT3 (ENSRFEG00010012952) #26	ENSRFEG00010012833	BNIP2 (ENSRFEG00010012661) #27	FOXB1 (ENSRFEG00010012632) #28	ENSRFEG00010012585	ENSRFEG00010012519	ANXA2 (ENSRFEG00010012337) ##29	ICE2 (ENSRFEG00010012249) #30	RORA (ENSRFEG00010011929) #31	VPS13C (ENSRFEG00010011688) #32	ENSRFEG00010011647	ENSRFEG00010011606	ENSRFEG00010011581
Microbat	MODERN SPECIES	960	ZNF280D (ENSMLUG00000001958) #9	TCF12 (ENSMLUG00000006205) #10	ENSMLUG00000028449	ENSMLUG00000028181	CGNL1 (ENSMLUG00000006276) #11	MYZAP (ENSMLUG00000010564) #12	POLR2M (ENSMLUG00000016026) #13	ALDH1A2 (ENSMLUG00000002098) #15	ENSMLUG00000001108 #16	LIPC (ENSMLUG00000027865) #17	ENSMLUG00000022615	ADAM10 (ENSMLUG00000005663) #18	MINDY2 (ENSMLUG00000000733) #19	SLTM (ENSMLUG00000000742) #20	RNF111 (ENSMLUG00000013496) #21	CCNB2 (ENSMLUG00000013505) #22
Megabat	MODERN SPECIES	1585															RNF111 (ENSPVAG00000000604) #21	CCNB2 (ENSPVAG00000000605) #22	MYO1E (ENSPVAG00000000606) #24
Equus	ANCESTRAL SPECIES	4	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257.j ##29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000163765 #33	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.b.l	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062
Horse	MODERN SPECIES		ZNF280D (ENSECAG00000008139) #9	ENSECAG00000055172	ENSECAG00000045013	TCF12 (ENSECAG00000011678) #10	CGNL1 (ENSECAG00000011325) #11	ALDH1A2 (ENSECAG00000014750) #15	ENSECAG00000046764	AQP9 (ENSECAG00000012789) #16	LIPC (ENSECAG00000020896) #17	ADAM10 (ENSECAG00000007963) #18	ENSECAG00000052250	ENSECAG00000059129	MINDY2 (ENSECAG00000019456) #19	SLTM (ENSECAG00000011267) #20	RNF111 (ENSECAG00000024602) #21	CCNB2 (ENSECAG00000014813) #22	MYO1E (ENSECAG00000024352) #24	ENSECAG00000038907	FAM81A (ENSECAG00000012692) #25	GTF2A2 (ENSECAG00000012182)	GCNT3 (ENSECAG00000004325) #26	BNIP2 (ENSECAG00000022557) #27	FOXB1 (ENSECAG00000004144) #28	ANXA2 (ENSECAG00000012670) ##29	ICE2 (ENSECAG00000008412) #30	RORA (ENSECAG00000016384) #31	VPS13C (ENSECAG00000017182) #32	ENSECAG00000038352 #33	ENSECAG00000035298 #33	ENSECAG00000052463	TLN2 (ENSECAG00000020488) #37
Donkey	MODERN SPECIES	11	MNS1 (ENSEASG00005009763) #8	ENSEASG00005024241	ENSEASG00005025175 #9	ENSEASG00005009750 #10	ENSEASG00005006845 #10	CGNL1 (ENSEASG00005006838) #11	MYZAP (ENSEASG00005006833) #12	POLR2M (ENSEASG00005006830) #13	ALDH1A2 (ENSEASG00005006828) #15	AQP9 (ENSEASG00005006825) #16	LIPC (ENSEASG00005006810) #17	ADAM10 (ENSEASG00005006804) #18	MINDY2 (ENSEASG00005006799) #19	SLTM (ENSEASG00005006792) #20	RNF111 (ENSEASG00005006789) #21	CCNB2 (ENSEASG00005006782) #22	MYO1E (ENSEASG00005006777) #24	FAM81A (ENSEASG00005006773) #25	GCNT3 (ENSEASG00005006772) #26	GTF2A2 (ENSEASG00005006771)	BNIP2 (ENSEASG00005006764) #27	FOXB1 (ENSEASG00005006761) #28	ANXA2 (ENSEASG00005006755) ##29	ICE2 (ENSEASG00005006725) #30	RORA (ENSEASG00005006718) #31	VPS13C (ENSEASG00005006073) #32	ENSEASG00005030086	ENSEASG00005032205	ENSEASG00005032522	TLN2 (ENSEASG00005005435) #37	ENSEASG00005024602
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155405 #22
Hedgehog	MODERN SPECIES	5124																ENSEEUG00000001143 #22
Common shrew	MODERN SPECIES	3964																CCNB2 (ENSSARG00000008300) #22
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000159331.b #26	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000160522 #28	ENSGT00940000154257 #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a
Afrotheria	ANCESTRAL SPECIES	58	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000154257 #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363	ENSGT00390000002049.c.b
Afrotheria_a	ANCESTRAL SPECIES	56	ENSGT01050000244970.b	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00390000014572	ENSGT00940000158531 #27	ENSGT00940000154257 #29	ENSGT00390000006883 #30	ENSGT00940000157387 #31	ENSGT00950000183083.a.d.a #32	ENSGT00940000162206	ENSGT00940000154699 #37	ENSGT01030000234542.b.a.a.b.a.a	ENSGT00390000001062	ENSGT00950000182891.a.a.a	ENSGT00940000155363	ENSGT00390000002049.c.b
Elephant	MODERN SPECIES	466	TEX9 (ENSLAFG00000016272) #7	MNS1 (ENSLAFG00000013495) #8	ZNF280D (ENSLAFG00000005060) #9	TCF12 (ENSLAFG00000010546) #10	CGNL1 (ENSLAFG00000015742) #11	MYZAP (ENSLAFG00000013840) #12	POLR2M (ENSLAFG00000028328) #13	ALDH1A2 (ENSLAFG00000018094) #15	AQP9 (ENSLAFG00000012160) #16	ENSLAFG00000028987	LIPC (ENSLAFG00000003533) #17	ADAM10 (ENSLAFG00000003535) #18	MINDY2 (ENSLAFG00000026046) #19	SLTM (ENSLAFG00000017922) #20	RNF111 (ENSLAFG00000004816) #21	CCNB2 (ENSLAFG00000004822) #22	MYO1E (ENSLAFG00000004825) #24	FAM81A (ENSLAFG00000014758) #25	GTF2A2 (ENSLAFG00000010773)	BNIP2 (ENSLAFG00000014187) #27	ANXA2 (ENSLAFG00000011404) #29	ICE2 (ENSLAFG00000017637) #30	RORA (ENSLAFG00000000577) #31	ENSLAFG00000012810 #32	ENSLAFG00000027908 #32	ENSLAFG00000013413	TLN2 (ENSLAFG00000000520) #37	TPM1 (ENSLAFG00000004960)	LACTB (ENSLAFG00000015480)	RPS27L (ENSLAFG00000015475)	RAB8B (ENSLAFG00000001771)
Hyrax	MODERN SPECIES	4206															RNF111 (ENSPCAG00000016268) #21	ENSPCAG00000016371 #22	ENSPCAG00000016411 #24
Tenrec	MODERN SPECIES	4952																CCNB2 (ENSETEG00000015475) #22
Xenarthra	ANCESTRAL SPECIES	307						ENSGT00940000155047 #10	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25
Sloth	MODERN SPECIES	4586																ENSCHOG00000005150 #22
Armadillo	MODERN SPECIES	959				ENSDNOG00000003182 #10	MYZAP (ENSDNOG00000003966) #12	ENSDNOG00000042909 #13	ENSDNOG00000044354	ALDH1A2 (ENSDNOG00000010541) #15	AQP9 (ENSDNOG00000044325) #16	LIPC (ENSDNOG00000040890) #17	ENSDNOG00000036584	ADAM10 (ENSDNOG00000040738) #18	MINDY2 (ENSDNOG00000013776) #19	SLTM (ENSDNOG00000002975) #20	RNF111 (ENSDNOG00000002542) #21	CCNB2 (ENSDNOG00000033547) #22	MYO1E (ENSDNOG00000003626) #24	ENSDNOG00000032898	FAM81A (ENSDNOG00000034819) #25
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B	ENSGT00940000156594	ENSGT00940000157011	ENSGT00510000050001	ENSGT00940000159103	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00550000074698.l	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00950000182907.a.b.b.b
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B.r	ENSGT00940000156594	ENSGT00940000157011	ENSGT00510000050001	ENSGT00940000159103	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00550000074698.l	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591	ENSGT00950000182907.a.b.b.b
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B.r	ENSGT00940000156594	ENSGT00940000157011	ENSGT00510000050001	ENSGT00940000159103	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00550000074698.l.d	ENSGT00550000074698.l.c.a	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000018333 #7	ENSGT00730000111210 #8	ENSGT00940000175332	ENSGT00940000158889 #9	ENSGT00940000155047 #10	ENSGT00940000154489.A #11	ENSGT00950000183065.A #12	ENSGT00950000183065.D #13	ENSGT00940000158898 #15	ENSGT00940000160582 #16	ENSGT00940000157602 #17	ENSGT00940000160579 #18	ENSGT00390000016607.a #19	ENSGT00940000156573 #20	ENSGT00940000157691 #21	ENSGT00940000155405 #22	ENSGT00940000157461 #24	ENSGT00390000004985.b #25	ENSGT00940000154617.B.r	ENSGT00940000156594	ENSGT00940000157011	ENSGT00510000050001	ENSGT00940000159103	ENSGT00940000157475	ENSGT01030000234519.e.b	ENSGT00550000074698.l.d	ENSGT00550000074698.l.c.a.a.b.a.a	ENSGT00940000155837	ENSGT00940000158844	ENSGT00390000006043	ENSGT00940000162591
koala	MODERN SPECIES		TEX9 (ENSPCIG00000018498) #7	MNS1 (ENSPCIG00000018499) #8	ZNF280D (ENSPCIG00000018502) #9	TCF12 (ENSPCIG00000026273) #10	CGNL1 (ENSPCIG00000026263) #11	MYZAP (ENSPCIG00000032158) #12	POLR2M (ENSPCIG00000026255) #13	ALDH1A2 (ENSPCIG00000026253) #15	AQP9 (ENSPCIG00000036207) #16	LIPC (ENSPCIG00000028345) #17	ADAM10 (ENSPCIG00000028347) #18	MINDY2 (ENSPCIG00000028352) #19	SLTM (ENSPCIG00000028356) #20	ENSPCIG00000028362	RNF111 (ENSPCIG00000023892) #21	CCNB2 (ENSPCIG00000023888) #22	MYO1E (ENSPCIG00000023881) #24	FAM81A (ENSPCIG00000023876) #25	ENSPCIG00000023869	THSD4 (ENSPCIG00000009624)	LRRC49 (ENSPCIG00000020753)	THAP10 (ENSPCIG00000020763)	LARP6 (ENSPCIG00000020765)	UACA (ENSPCIG00000020484)	TLE3 (ENSPCIG00000020857)	ENSPCIG00000034041	ENSPCIG00000020777	KIF23 (ENSPCIG00000013844)	PAQR5 (ENSPCIG00000013860)	GLCE (ENSPCIG00000013869)	NOX5 (ENSPCIG00000013880)
Common wonbat	MODERN SPECIES	581											LIPC (ENSVURG00010018727) #17	ADAM10 (ENSVURG00010018710) #18	MINDY2 (ENSVURG00010018700) #19	SLTM (ENSVURG00010018693) #20	RNF111 (ENSVURG00010018682) #21	CCNB2 (ENSVURG00010018670) #22	MYO1E (ENSVURG00010018655) #24	FAM81A (ENSVURG00010018639) #25	ENSVURG00010018634	ENSVURG00010018625	THSD4 (ENSVURG00010018583)	ENSVURG00010018573	LRRC49 (ENSVURG00010018538)	LARP6 (ENSVURG00010018515)	UACA (ENSVURG00010018458)	TLE3 (ENSVURG00010018378)	ENSVURG00010018359	ENSVURG00010018348	KIF23 (ENSVURG00010018250)	GLCE (ENSVURG00010018222)	NOX5 (ENSVURG00010018209)
Wallaby	MODERN SPECIES	6261																ENSMEUG00000016283 #22	MYO1E (ENSMEUG00000016292) #24
Tasmanian devil	MODERN SPECIES	1	TEX9 (ENSSHAG00000017749) #7	MNS1 (ENSSHAG00000017711) #8	ZNF280D (ENSSHAG00000017405) #9	ENSSHAG00000023900 #10	ENSSHAG00000015935 #10	CGNL1 (ENSSHAG00000014820) #11	MYZAP (ENSSHAG00000014214) #12	POLR2M (ENSSHAG00000013954) #13	ALDH1A2 (ENSSHAG00000012217) #15	AQP9 (ENSSHAG00000011444) #16	LIPC (ENSSHAG00000006097) #17	ADAM10 (ENSSHAG00000025847) #18	MINDY2 (ENSSHAG00000029720) #19	SLTM (ENSSHAG00000015395) #20	RNF111 (ENSSHAG00000014920) #21	CCNB2 (ENSSHAG00000014698) #22	MYO1E (ENSSHAG00000014042) #24	ENSSHAG00000012883 #25	ENSSHAG00000011727	LRRC49 (ENSSHAG00000023183)	THAP10 (ENSSHAG00000030659)	LARP6 (ENSSHAG00000018495)	UACA (ENSSHAG00000018301)	TLE3 (ENSSHAG00000017102)	ENSSHAG00000022254	RPLP1 (ENSSHAG00000014818)	KIF23 (ENSSHAG00000014701)	ENSSHAG00000014510	GLCE (ENSSHAG00000023440)	NOX5 (ENSSHAG00000012412)	ENSSHAG00000010906
Opossum	MODERN SPECIES		ENSMODG00000051438	TCF12 (ENSMODG00000008311) #10	CGNL1 (ENSMODG00000008365) #11	MYZAP (ENSMODG00000008437) #12	ENSMODG00000008459 #13	ENSMODG00000048733	ALDH1A2 (ENSMODG00000008641) #15	ENSMODG00000008662 #16	ENSMODG00000038854	LIPC (ENSMODG00000008689) #17	ADAM10 (ENSMODG00000008735) #18	ENSMODG00000039109	MINDY2 (ENSMODG00000008761) #19	ENSMODG00000008794 #20	RNF111 (ENSMODG00000008829) #21	CCNB2 (ENSMODG00000008862) #22	MYO1E (ENSMODG00000008886) #24	ENSMODG00000008897 #25	ENSMODG00000048044	ENSMODG00000008920	THSD4 (ENSMODG00000008931)	LRRC49 (ENSMODG00000009017)	THAP10 (ENSMODG00000009022)	LARP6 (ENSMODG00000046230)	UACA (ENSMODG00000009133)	TLE3 (ENSMODG00000009200)	ENSMODG00000009209	ENSMODG00000009218	KIF23 (ENSMODG00000009242)	PAQR5 (ENSMODG00000009253)	ENSMODG00000038950
Platypus	MODERN SPECIES	19	RFX7 (ENSOANG00000008526)	ENSOANG00000008525 #7	MNS1 (ENSOANG00000009459) #8	ZNF280D (ENSOANG00000046608) #9	TCF12 (ENSOANG00000009462) #10	CGNL1 (ENSOANG00000042911) #11	MYZAP (ENSOANG00000007558) #12	ENSOANG00000044862 #13	ALDH1A2 (ENSOANG00000047195) #15	AQP9 (ENSOANG00000041403) #16	LIPC (ENSOANG00000048492) #17	ADAM10 (ENSOANG00000009151) #18	ENSOANG00000038536 #19	SLTM (ENSOANG00000012311) #20	RNF111 (ENSOANG00000012312) #21	CCNB2 (ENSOANG00000012313) #22	MYO1E (ENSOANG00000031114) #24	FAM81A (ENSOANG00000009485) #25	ENSOANG00000038164	THSD4 (ENSOANG00000039575)	LRRC49 (ENSOANG00000014128)	ENSOANG00000041385	ENSOANG00000037386	ENSOANG00000038197	IQGAP1 (ENSOANG00000000671)	ENSOANG00000011894	ENSOANG00000050958	SEC11A (ENSOANG00000015254)	ENSOANG00000039259	ENSOANG00000036605	ENSOANG00000011884