Mammalia	ANCESTRAL SPECIES	126															ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34
Theria	ANCESTRAL SPECIES	16															ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01100000263839
Eutheria	ANCESTRAL SPECIES		ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01100000263839
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01100000263839
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Primates	ANCESTRAL SPECIES	4	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Simiiformes	ANCESTRAL SPECIES	3	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.u ##14	ENSGT01090000263471	ENSGT00940000154383.v.a.b ##14	ENSGT00910000147199	ENSGT00940000154383.v.a.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000169281	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Platyrrhini	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b.g.a #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.a #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00390000012430.d	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000169281	ENSGT00940000155058.c #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	1	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b.g.a #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.a #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00390000012430.d	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.ab #22	ENSGT00510000047363 #23	ENSGT00940000155058.c #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Cebidae_a	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b.g.a #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.a #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00390000012430.d	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.ab #22	ENSGT00510000047363 #23	ENSGT00940000155058.c #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	135	IQCC (ENSSBOG00000028040) #7	CCDC28B (ENSSBOG00000025914) #8	TXLNA (ENSSBOG00000035001) #9	KPNA6 (ENSSBOG00000026463) #10	TMEM39B (ENSSBOG00000029137) #11	KHDRBS1 (ENSSBOG00000031548) #12	ENSSBOG00000022787 #13	ENSSBOG00000030499 #14	SPOCD1 (ENSSBOG00000028069) #15	ADGRB2 (ENSSBOG00000032588) #16	COL16A1 (ENSSBOG00000031855) #17	ENSSBOG00000035586 #18	HCRTR1 (ENSSBOG00000036269) #19	TINAGL1 (ENSSBOG00000036278) #20	SERINC2 (ENSSBOG00000029623) #21	FABP3 (ENSSBOG00000024843) #22	ZCCHC17 (ENSSBOG00000029249) #23	SNRNP40 (ENSSBOG00000019987) #24	NKAIN1 (ENSSBOG00000000522) #25	PUM1 (ENSSBOG00000032037) #26	ENSSBOG00000021400 #27	SDC3 (ENSSBOG00000034809) #28	LAPTM5 (ENSSBOG00000036012) #29	MATN1 (ENSSBOG00000025737) #30	PTPRU (ENSSBOG00000032299) #31	MECR (ENSSBOG00000035605) #32	SRSF4 (ENSSBOG00000027098) #33	EPB41 (ENSSBOG00000034516) #34	OPRD1 (ENSSBOG00000018704) #35	ENSSBOG00000028922 #36	YTHDF2 (ENSSBOG00000034045) #37
Bolivian squirrel monkey	MODERN SPECIES	106	KCTD4 (ENSSBOG00000019746)	ENSSBOG00000021983	NUFIP1 (ENSSBOG00000028111)	TSC22D1 (ENSSBOG00000021407)	SERP2 (ENSSBOG00000023986)	SMIM2 (ENSSBOG00000025045)	LACC1 (ENSSBOG00000032664)	CCDC122 (ENSSBOG00000024643)	ENOX1 (ENSSBOG00000035177)	DNAJC15 (ENSSBOG00000033169)	EPSTI1 (ENSSBOG00000034834)	ENSSBOG00000031675	FAM216B (ENSSBOG00000028998)	TNFSF11 (ENSSBOG00000027654)	ENSSBOG00000033805	ENSSBOG00000024102 ##22	AKAP11 (ENSSBOG00000013175)	DGKH (ENSSBOG00000019023)	VWA8 (ENSSBOG00000031026)	ENSSBOG00000016579	RGCC (ENSSBOG00000034616)	NAA16 (ENSSBOG00000030176)	MTRF1 (ENSSBOG00000004572)	ENSSBOG00000025048	KBTBD7 (ENSSBOG00000011075)	KBTBD6 (ENSSBOG00000008935)	WBP4 (ENSSBOG00000026978)	ELF1 (ENSSBOG00000024356)	ENSSBOG00000024617	SLC25A15 (ENSSBOG00000003370)	MRPS31 (ENSSBOG00000034159)
Capuchin	MODERN SPECIES	96								LACC1 (ENSCCAG00000036612)	CCDC122 (ENSCCAG00000031193)	ENOX1 (ENSCCAG00000033756)	DNAJC15 (ENSCCAG00000032014)	EPSTI1 (ENSCCAG00000028457)	FAM216B (ENSCCAG00000020670)	TNFSF11 (ENSCCAG00000021412)	ENSCCAG00000031208	ENSCCAG00000031576 #22	AKAP11 (ENSCCAG00000021435)	DGKH (ENSCCAG00000033754)	ERBB3 (ENSCCAG00000034488)	ENSCCAG00000030569	ENSCCAG00000038067	ENSCCAG00000027265	ENSCCAG00000020214	ESYT1 (ENSCCAG00000037028)	ENSCCAG00000028306	MYL6 (ENSCCAG00000034648)	SMARCC2 (ENSCCAG00000023462)	ENSCCAG00000029583	NABP2 (ENSCCAG00000030372)	SLC39A5 (ENSCCAG00000037965)	ANKRD52 (ENSCCAG00000020543)
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155104.`b.a ##22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000155104.`b.a ##22
Capuchin	MODERN SPECIES	31	ENSCCAG00000001577	ENSCCAG00000024189	ENSCCAG00000035629	CNGA3 (ENSCCAG00000036994)	INPP4A (ENSCCAG00000032743)	COA5 (ENSCCAG00000031470)	UNC50 (ENSCCAG00000028599)	MGAT4A (ENSCCAG00000025882)	CRACDL (ENSCCAG00000029992)	C2orf15 (ENSCCAG00000027023)	TSGA10 (ENSCCAG00000029564)	LIPT1 (ENSCCAG00000018953)	MITD1 (ENSCCAG00000031759)	RASSF2 (ENSCCAG00000034388)	SLC23A2 (ENSCCAG00000027857)	ENSCCAG00000019801 ##22	ENSCCAG00000028801	PCNA (ENSCCAG00000037224)	CDS2 (ENSCCAG00000026795)	ENSCCAG00000032595	PROKR2 (ENSCCAG00000037325)	ENSCCAG00000030115	ENSCCAG00000023107	ENSCCAG00000030617	GPCPD1 (ENSCCAG00000025356)	SHLD1 (ENSCCAG00000029838)	CHGB (ENSCCAG00000026987)	TRMT6 (ENSCCAG00000026939)	MCM8 (ENSCCAG00000026974)	CRLS1 (ENSCCAG00000037351)	LRRN4 (ENSCCAG00000030748)
Marmoset	MODERN SPECIES	19	CCDC28B (ENSCJAG00000006747) #8	TXLNA (ENSCJAG00000006728) #9	KPNA6 (ENSCJAG00000006669) #10	TMEM39B (ENSCJAG00000006630) #11	ENSCJAG00000076153	ENSCJAG00000006580 #12	PTP4A2 (ENSCJAG00000044384) ##14	ENSCJAG00000006536 #15	ADGRB2 (ENSCJAG00000006434) #16	COL16A1 (ENSCJAG00000006371) #17	ENSCJAG00000006355 #18	HCRTR1 (ENSCJAG00000006342) #19	TINAGL1 (ENSCJAG00000006317) #20	ENSCJAG00000075483	SERINC2 (ENSCJAG00000006312) #21	ENSCJAG00000067643 ##22	ENSCJAG00000065200	ENSCJAG00000006259 #23	ENSCJAG00000006212 #24	NKAIN1 (ENSCJAG00000038268) #25	ENSCJAG00000075386	PUM1 (ENSCJAG00000006035) #26	ENSCJAG00000073130	SDC3 (ENSCJAG00000085360) #28	LAPTM5 (ENSCJAG00000062185) #29	MATN1 (ENSCJAG00000005964) #30	PTPRU (ENSCJAG00000010031) #31	MECR (ENSCJAG00000009994) #32	SRSF4 (ENSCJAG00000047192) #33	EPB41 (ENSCJAG00000009831) #34	OPRD1 (ENSCJAG00000009824) #35
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155104.`b.b ##22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000155104.`b.b ##22
Capuchin	MODERN SPECIES	51	CCDC28B (ENSCCAG00000022531) #8	TXLNA (ENSCCAG00000034796) #9	ENSCCAG00000034188 ##10	TMEM39B (ENSCCAG00000030953) #11	KHDRBS1 (ENSCCAG00000034524) #12	ENSCCAG00000015641	ENSCCAG00000035514 ##14	SPOCD1 (ENSCCAG00000035023) #15	ADGRB2 (ENSCCAG00000024219) #16	COL16A1 (ENSCCAG00000034225) #17	PEF1 (ENSCCAG00000034817) #18	HCRTR1 (ENSCCAG00000034394) #19	TINAGL1 (ENSCCAG00000035538) #20	ENSCCAG00000028620	SERINC2 (ENSCCAG00000022777) #21	FABP3 (ENSCCAG00000037665) ##22	ZCCHC17 (ENSCCAG00000033666) #23	SNRNP40 (ENSCCAG00000030763) #24	NKAIN1 (ENSCCAG00000033899) #25	ENSCCAG00000003174	ENSCCAG00000032489 #27	ENSCCAG00000029909 #26	TMOD1 (ENSCCAG00000032163)	TSTD2 (ENSCCAG00000036487)	NCBP1 (ENSCCAG00000032297)	XPA (ENSCCAG00000033822)	FOXE1 (ENSCCAG00000019725)	TRMO (ENSCCAG00000031902)	HEMGN (ENSCCAG00000032925)	ANP32B (ENSCCAG00000003754)	NANS (ENSCCAG00000025455)
Mas night monkey	MODERN SPECIES	1281			TMEM39B (ENSANAG00000023084) #11	KHDRBS1 (ENSANAG00000026939) #12	ENSANAG00000026331 ##13	ENSANAG00000025612	PTP4A2 (ENSANAG00000030836) ##14	SPOCD1 (ENSANAG00000031653) #15	ADGRB2 (ENSANAG00000029461) #16	COL16A1 (ENSANAG00000024652) #17	ENSANAG00000032316 #18	HCRTR1 (ENSANAG00000025201) #19	TINAGL1 (ENSANAG00000025062) #20	ENSANAG00000024434	SERINC2 (ENSANAG00000026109) #21	FABP3 (ENSANAG00000023651) #22	ZCCHC17 (ENSANAG00000024208) #23	ENSANAG00000021594	SNRNP40 (ENSANAG00000024470) #24	NKAIN1 (ENSANAG00000021249) #25	ENSANAG00000021771 #27	PUM1 (ENSANAG00000027865) #26	SDC3 (ENSANAG00000024425) #28	LAPTM5 (ENSANAG00000020926) #29	MATN1 (ENSANAG00000001841) #30	PTPRU (ENSANAG00000021332) #31	MECR (ENSANAG00000022014) #32	SRSF4 (ENSANAG00000037134) #33	TMEM200B (ENSANAG00000021732)	EPB41 (ENSANAG00000020638) #34	OPRD1 (ENSANAG00000036570) #35
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.u ##14	ENSGT01090000263471	ENSGT00940000154383.v.a.b ##14	ENSGT00940000154383.v.a.a #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.f #24	ENSGT00940000169281	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Vervet Monkey	MODERN SPECIES	12	TMEM234 (ENSCSAG00000001049)	IQCC (ENSCSAG00000001048) #7	CCDC28B (ENSCSAG00000001047) #8	TXLNA (ENSCSAG00000001046) #9	KPNA6 (ENSCSAG00000001045) #10	TMEM39B (ENSCSAG00000001044) #11	KHDRBS1 (ENSCSAG00000001043) #12	ENSCSAG00000001042 ##14	SPOCD1 (ENSCSAG00000001041) #15	ADGRB2 (ENSCSAG00000001040) #16	ENSCSAG00000001039 #17	PEF1 (ENSCSAG00000001038) ##18	HCRTR1 (ENSCSAG00000001037) #19	TINAGL1 (ENSCSAG00000001036) #20	SERINC2 (ENSCSAG00000001035) #21	FABP3 (ENSCSAG00000001033) #22	ZCCHC17 (ENSCSAG00000001032) #23	SNRNP40 (ENSCSAG00000001031) #24	NKAIN1 (ENSCSAG00000001030) #25	ENSCSAG00000001029	PUM1 (ENSCSAG00000001028) #26	SDC3 (ENSCSAG00000001027) #28	LAPTM5 (ENSCSAG00000001026) #29	MATN1 (ENSCSAG00000001025) #30	PTPRU (ENSCSAG00000001024) #31	MECR (ENSCSAG00000001023) #32	SRSF4 (ENSCSAG00000001022) #33	TMEM200B (ENSCSAG00000000655)	EPB41 (ENSCSAG00000001021) #34	OPRD1 (ENSCSAG00000001020) #35	ENSCSAG00000001019
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000164617	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b.a ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000164617	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Olive baboon	MODERN SPECIES		CCDC28B (ENSPANG00000015080) #8	TXLNA (ENSPANG00000020220) #9	KPNA6 (ENSPANG00000007649) #10	TMEM39B (ENSPANG00000016297) #11	KHDRBS1 (ENSPANG00000023230) #12	ENSPANG00000040456	PTP4A2 (ENSPANG00000008254) ##14	SPOCD1 (ENSPANG00000017826) #15	ADGRB2 (ENSPANG00000005575) #16	COL16A1 (ENSPANG00000025216) #17	ENSPANG00000005576 ##18	HCRTR1 (ENSPANG00000019532) #19	ENSPANG00000002587	TINAGL1 (ENSPANG00000017800) #20	ENSPANG00000021935	FABP3 (ENSPANG00000000127) #22	ZCCHC17 (ENSPANG00000016167) #23	SNRNP40 (ENSPANG00000017889) #24	NKAIN1 (ENSPANG00000037021) #25	ENSPANG00000043235	ENSPANG00000036631	ENSPANG00000038636	ENSPANG00000046354	PUM1 (ENSPANG00000016338) #26	SDC3 (ENSPANG00000008025) #28	LAPTM5 (ENSPANG00000016018) #29	MATN1 (ENSPANG00000016577) #30	ENSPANG00000038388	PTPRU (ENSPANG00000011555) #31	MECR (ENSPANG00000007687) #32	SRSF4 (ENSPANG00000021937) #33
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b.a ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Sooty mangabey	MODERN SPECIES	227	IQCC (ENSCATG00000033168) #7	CCDC28B (ENSCATG00000033193) #8	TXLNA (ENSCATG00000043679) #9	KPNA6 (ENSCATG00000035399) #10	TMEM39B (ENSCATG00000033795) #11	KHDRBS1 (ENSCATG00000044448) #12	PTP4A2 (ENSCATG00000029937) ##14	SPOCD1 (ENSCATG00000044230) #15	ADGRB2 (ENSCATG00000036238) #16	COL16A1 (ENSCATG00000044173) #17	ENSCATG00000043554 ##18	HCRTR1 (ENSCATG00000044141) #19	TINAGL1 (ENSCATG00000044434) #20	SERINC2 (ENSCATG00000044118) #21	ENSCATG00000020444	FABP3 (ENSCATG00000043604) #22	ZCCHC17 (ENSCATG00000044586) #23	SNRNP40 (ENSCATG00000027459) #24	NKAIN1 (ENSCATG00000033203) #25	PUM1 (ENSCATG00000017991) #26	SDC3 (ENSCATG00000043852) #28	LAPTM5 (ENSCATG00000043956) #29	MATN1 (ENSCATG00000044560) #30	PTPRU (ENSCATG00000036995) #31	MECR (ENSCATG00000043979) #32	SRSF4 (ENSCATG00000031440) #33	TMEM200B (ENSCATG00000005039)	EPB41 (ENSCATG00000028944) #34	ENSCATG00000006297	OPRD1 (ENSCATG00000027331) #35	YTHDF2 (ENSCATG00000044332) #37
Drill	DUPLICATION
Drill	MODERN SPECIES	465	GTF2F2 (ENSMLEG00000014777)	KCTD4 (ENSMLEG00000023023)	ENSMLEG00000038702	NUFIP1 (ENSMLEG00000027383)	ENSMLEG00000031148	TSC22D1 (ENSMLEG00000033850)	SERP2 (ENSMLEG00000028135)	SMIM2 (ENSMLEG00000044402)	LACC1 (ENSMLEG00000035433)	CCDC122 (ENSMLEG00000034489)	ENOX1 (ENSMLEG00000027764)	DNAJC15 (ENSMLEG00000035648)	EPSTI1 (ENSMLEG00000042839)	FAM216B (ENSMLEG00000029691)	TNFSF11 (ENSMLEG00000043519)	ENSMLEG00000036105 #22	AKAP11 (ENSMLEG00000042723)	DGKH (ENSMLEG00000018820)	ENSMLEG00000030444
Drill	MODERN SPECIES	426	CCDC28B (ENSMLEG00000035364) #8	TXLNA (ENSMLEG00000035260) #9	KPNA6 (ENSMLEG00000043272) #10	TMEM39B (ENSMLEG00000042460) #11	KHDRBS1 (ENSMLEG00000032825) #12	ENSMLEG00000038580 ##14	SPOCD1 (ENSMLEG00000016232) #15	ADGRB2 (ENSMLEG00000036379) #16	COL16A1 (ENSMLEG00000033357) #17	ENSMLEG00000027504 ##18	HCRTR1 (ENSMLEG00000039071) #19	ENSMLEG00000027924	TINAGL1 (ENSMLEG00000038929) #20	ENSMLEG00000040265	SERINC2 (ENSMLEG00000036834) #21	FABP3 (ENSMLEG00000035716) #22	ZCCHC17 (ENSMLEG00000040817) #23	ENSMLEG00000027010	SNRNP40 (ENSMLEG00000035197) #24	NKAIN1 (ENSMLEG00000044395) #25	PUM1 (ENSMLEG00000038743) #26	SDC3 (ENSMLEG00000032383) #28	LAPTM5 (ENSMLEG00000034084) #29	MATN1 (ENSMLEG00000042029) #30
Macaca	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b.d.a ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000164617	ENSGT00940000160023 #20	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00390000010721.a.a.b	ENSGT00940000157669 #35
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	180	KCTD4 (ENSMNEG00000025133)	GPALPP1 (ENSMNEG00000033610)	NUFIP1 (ENSMNEG00000033299)	ENSMNEG00000004676	ENSMNEG00000035585	TSC22D1 (ENSMNEG00000000209)	SERP2 (ENSMNEG00000042638)	SMIM2 (ENSMNEG00000042675)	LACC1 (ENSMNEG00000045105)	CCDC122 (ENSMNEG00000039888)	ENOX1 (ENSMNEG00000040967)	DNAJC15 (ENSMNEG00000039087)	EPSTI1 (ENSMNEG00000027227)	FAM216B (ENSMNEG00000040597)	TNFSF11 (ENSMNEG00000031662)	ENSMNEG00000036293 #22	AKAP11 (ENSMNEG00000045160)	DGKH (ENSMNEG00000038131)	VWA8 (ENSMNEG00000039926)	RGCC (ENSMNEG00000036862)	NAA16 (ENSMNEG00000036159)	MTRF1 (ENSMNEG00000035487)	KBTBD7 (ENSMNEG00000018279)	KBTBD6 (ENSMNEG00000038336)	WBP4 (ENSMNEG00000039992)	ELF1 (ENSMNEG00000044466)	SLC25A15 (ENSMNEG00000042783)	MRPS31 (ENSMNEG00000031161)	ENSMNEG00000030680	FOXO1 (ENSMNEG00000031472)	COG6 (ENSMNEG00000042440)
Pig-tailed macaque	MODERN SPECIES	217	CCDC28B (ENSMNEG00000041534) #8	TXLNA (ENSMNEG00000042689) #9	KPNA6 (ENSMNEG00000044554) #10	TMEM39B (ENSMNEG00000020570) #11	KHDRBS1 (ENSMNEG00000035607) #12	PTP4A2 (ENSMNEG00000030559) ##14	SPOCD1 (ENSMNEG00000028459) #15	ADGRB2 (ENSMNEG00000033277) #16	COL16A1 (ENSMNEG00000030754) #17	PEF1 (ENSMNEG00000039313) ##18	HCRTR1 (ENSMNEG00000042588) #19	ENSMNEG00000014998	TINAGL1 (ENSMNEG00000013230) #20	ENSMNEG00000033066	SERINC2 (ENSMNEG00000034138) #21	FABP3 (ENSMNEG00000028162) #22	ZCCHC17 (ENSMNEG00000032021) #23	ENSMNEG00000030407	SNRNP40 (ENSMNEG00000033437) #24	NKAIN1 (ENSMNEG00000041535) #25	PUM1 (ENSMNEG00000034639) #26	SDC3 (ENSMNEG00000030268) #28	LAPTM5 (ENSMNEG00000012765) #29	MATN1 (ENSMNEG00000031564) #30	PTPRU (ENSMNEG00000044104) #31	MECR (ENSMNEG00000042809) #32	SRSF4 (ENSMNEG00000034931) #33	TMEM200B (ENSMNEG00000025032)	EPB41 (ENSMNEG00000029961) #34	ENSMNEG00000002799	OPRD1 (ENSMNEG00000039650) #35
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.v.a.b.c ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b.d.a ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000164617	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00910000147267 #27	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.b.a.b.a.b.a.b.a.a.a	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00390000010721.a.a.b
Crab-eating macaque	MODERN SPECIES		CCDC28B (ENSMFAG00000031708) #8	TXLNA (ENSMFAG00000041015) #9	KPNA6 (ENSMFAG00000000429) #10	TMEM39B (ENSMFAG00000036558) #11	KHDRBS1 (ENSMFAG00000001194) #12	PTP4A2 (ENSMFAG00000038041) ##14	SPOCD1 (ENSMFAG00000030849) #15	ADGRB2 (ENSMFAG00000028460) #16	COL16A1 (ENSMFAG00000042878) #17	PEF1 (ENSMFAG00000030472) ##18	HCRTR1 (ENSMFAG00000044224) #19	ENSMFAG00000033663	TINAGL1 (ENSMFAG00000001721) #20	SERINC2 (ENSMFAG00000042146) #21	ZCCHC17 (ENSMFAG00000039045) #23	FABP3 (ENSMFAG00000031211) #22	SNRNP40 (ENSMFAG00000031418) #24	NKAIN1 (ENSMFAG00000036574) #25	PUM1 (ENSMFAG00000010291) #26	ENSMFAG00000051031 #27	SDC3 (ENSMFAG00000045826) #28	LAPTM5 (ENSMFAG00000022085) #29	MATN1 (ENSMFAG00000031992) #30	ENSMFAG00000044095	ENSMFAG00000063061	PTPRU (ENSMFAG00000001608) #31	MECR (ENSMFAG00000000155) #32	SRSF4 (ENSMFAG00000041784) #33	TMEM200B (ENSMFAG00000038738)	ENSMFAG00000062308	EPB41 (ENSMFAG00000046344) #34
Rhesus	MODERN SPECIES		CCDC28B (ENSMMUG00000015066) #8	TXLNA (ENSMMUG00000015580) #9	KPNA6 (ENSMMUG00000008455) #10	TMEM39B (ENSMMUG00000015650) #11	KHDRBS1 (ENSMMUG00000023438) #12	PTP4A2 (ENSMMUG00000046901) ##14	SPOCD1 (ENSMMUG00000005466) #15	ADGRB2 (ENSMMUG00000023401) #16	COL16A1 (ENSMMUG00000023398) #17	ENSMMUG00000023397 ##18	HCRTR1 (ENSMMUG00000023396) #19	ENSMMUG00000023395	SERINC2 (ENSMMUG00000013188) #20	ENSMMUG00000049574	ZCCHC17 (ENSMMUG00000012156) #23	FABP3 (ENSMMUG00000064353) #22	SNRNP40 (ENSMMUG00000019406) #24	NKAIN1 (ENSMMUG00000019884) #25	PUM1 (ENSMMUG00000013520) #26	ENSMMUG00000063979 #27	SDC3 (ENSMMUG00000013519) #28	LAPTM5 (ENSMMUG00000008744) #29	MATN1 (ENSMMUG00000054963) #30	ENSMMUG00000051737	ENSMMUG00000057173	PTPRU (ENSMMUG00000015661) #31	MECR (ENSMMUG00000015659) #32	SRSF4 (ENSMMUG00000007110) #33	TMEM200B (ENSMMUG00000011378)	EPB41 (ENSMMUG00000011377) #34	YTHDF2 (ENSMMUG00000011391) #37
Rhinopithecus	ANCESTRAL SPECIES	156	ENSGT00940000159552	ENSGT00390000012569.b	ENSGT00390000003758	ENSGT00390000003628.b.c.b.a.a.a	ENSGT00940000159144.B	ENSGT00940000163647	ENSGT00940000162467.b	ENSGT00390000014262	ENSGT00390000000693	ENSGT00390000005130	ENSGT00390000006788.a.b	ENSGT00940000159907	ENSGT00390000013820	ENSGT00940000154512.a	ENSGT01070000253816.a.a.b	ENSGT00940000155104 #22	ENSGT00510000047363 #23
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	1507												ENSRBIG00000028379	MAGEL2 (ENSRBIG00000007801)	NDN (ENSRBIG00000009280)	TNFSF11 (ENSRBIG00000036386)	ENSRBIG00000037894 #22	AKAP11 (ENSRBIG00000036023)	DGKH (ENSRBIG00000030309)	VWA8 (ENSRBIG00000034278)	RGCC (ENSRBIG00000031991)	NAA16 (ENSRBIG00000037675)	ENSRBIG00000026954	ENSRBIG00000043748	MTRF1 (ENSRBIG00000007069)	ENSRBIG00000030206	ENSRBIG00000035054	KBTBD6 (ENSRBIG00000037297)	WBP4 (ENSRBIG00000041962)	ELF1 (ENSRBIG00000028865)	ENSRBIG00000000771	SLC25A15 (ENSRBIG00000037546)
Black snub-nosed monkey	MODERN SPECIES	1873	DCDC2B (ENSRBIG00000039126)	IQCC (ENSRBIG00000027307) #7	CCDC28B (ENSRBIG00000022149) #8	TXLNA (ENSRBIG00000044142) #9	KPNA6 (ENSRBIG00000036564) #10	TMEM39B (ENSRBIG00000026786) #11	KHDRBS1 (ENSRBIG00000028373) #12	ENSRBIG00000044763 ##14	SPOCD1 (ENSRBIG00000035234) #15	ADGRB2 (ENSRBIG00000039470) #16	COL16A1 (ENSRBIG00000031525) #17	PEF1 (ENSRBIG00000044431) ##18	HCRTR1 (ENSRBIG00000029068) #19	TINAGL1 (ENSRBIG00000037828) #20	SERINC2 (ENSRBIG00000035929) #21	FABP3 (ENSRBIG00000007191) #22	ZCCHC17 (ENSRBIG00000033939) #23	ENSRBIG00000007354	SNRNP40 (ENSRBIG00000027853) #24	NKAIN1 (ENSRBIG00000037899) #25	PUM1 (ENSRBIG00000042521) #26	SDC3 (ENSRBIG00000029710) #28	LAPTM5 (ENSRBIG00000036618) #29	MATN1 (ENSRBIG00000043616) #30
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1793													ENSRROG00000034426	FAM216B (ENSRROG00000003798)	TNFSF11 (ENSRROG00000028662)	ENSRROG00000025518 #22	AKAP11 (ENSRROG00000030390)	DGKH (ENSRROG00000030004)	VWA8 (ENSRROG00000043191)	RGCC (ENSRROG00000029679)	NAA16 (ENSRROG00000031116)	ENSRROG00000024797	ENSRROG00000015827	MTRF1 (ENSRROG00000035345)	KBTBD7 (ENSRROG00000028641)	ENSRROG00000037292	KBTBD6 (ENSRROG00000026268)	WBP4 (ENSRROG00000044405)	ELF1 (ENSRROG00000037511)	ENSRROG00000043031	SLC25A15 (ENSRROG00000041123)
Golden snub-nosed monkey	MODERN SPECIES	783	DCDC2B (ENSRROG00000031886)	IQCC (ENSRROG00000029490) #7	CCDC28B (ENSRROG00000027591) #8	TXLNA (ENSRROG00000004597) #9	KPNA6 (ENSRROG00000045186) #10	TMEM39B (ENSRROG00000043561) #11	KHDRBS1 (ENSRROG00000043518) #12	ENSRROG00000030559 ##14	SPOCD1 (ENSRROG00000044215) #15	ADGRB2 (ENSRROG00000038153) #16	COL16A1 (ENSRROG00000041136) #17	PEF1 (ENSRROG00000042803) ##18	HCRTR1 (ENSRROG00000031014) #19	TINAGL1 (ENSRROG00000029462) #20	SERINC2 (ENSRROG00000045551) #21	FABP3 (ENSRROG00000042992) #22	ZCCHC17 (ENSRROG00000028866) #23	ENSRROG00000042063	SNRNP40 (ENSRROG00000028537) #24	NKAIN1 (ENSRROG00000038223) #25	ENSRROG00000005322	PUM1 (ENSRROG00000020156) #26
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000167695.b	ENSGT00940000154383.v.a.b ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000158302.d.b	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000169281	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Gibbon	MODERN SPECIES	2	ENSNLEG00000002386 #8	TXLNA (ENSNLEG00000002301) #9	KPNA6 (ENSNLEG00000026894) #10	TMEM39B (ENSNLEG00000002175) #11	ENSNLEG00000002148 #12	ENSNLEG00000018196	PTP4A2 (ENSNLEG00000002137) ##14	SPOCD1 (ENSNLEG00000002098) #15	ADGRB2 (ENSNLEG00000002059) #16	ENSNLEG00000036165	PEF1 (ENSNLEG00000001979) ##18	HCRTR1 (ENSNLEG00000001953) #19	TINAGL1 (ENSNLEG00000001808) #20	ENSNLEG00000018195	SERINC2 (ENSNLEG00000001605) #21	FABP3 (ENSNLEG00000035320) #22	ZCCHC17 (ENSNLEG00000001493) #23	ENSNLEG00000034052	SNRNP40 (ENSNLEG00000034156) #24	NKAIN1 (ENSNLEG00000001297) #25	ENSNLEG00000032088	ENSNLEG00000032957 #27	PUM1 (ENSNLEG00000001151) #26	SDC3 (ENSNLEG00000001148) #28	LAPTM5 (ENSNLEG00000032538) #29	MATN1 (ENSNLEG00000001107) #30
Hominidae	ANCESTRAL SPECIES	3	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000167695.b	ENSGT00940000154383.v.a.b ##14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00550000076338	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000169281	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000167695.b	ENSGT00940000154383.v.a.b ##14	ENSGT00910000147199.b	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000169281	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Gorilla	MODERN SPECIES		TXLNA (ENSGGOG00000001571) #9	KPNA6 (ENSGGOG00000004016) #10	TMEM39B (ENSGGOG00000008638) #11	KHDRBS1 (ENSGGOG00000008633) #12	ENSGGOG00000043990	PTP4A2 (ENSGGOG00000013057) ##14	ENSGGOG00000038353	SPOCD1 (ENSGGOG00000016748) #15	ADGRB2 (ENSGGOG00000016616) #16	COL16A1 (ENSGGOG00000015740) #17	PEF1 (ENSGGOG00000015897) ##18	HCRTR1 (ENSGGOG00000015894) #19	TINAGL1 (ENSGGOG00000015888) #20	ENSGGOG00000027763	SERINC2 (ENSGGOG00000008227) #21	FABP3 (ENSGGOG00000014432) #22	ZCCHC17 (ENSGGOG00000009126) #23	ENSGGOG00000037147	SNRNP40 (ENSGGOG00000001034) #24	NKAIN1 (ENSGGOG00000009189) #25	ENSGGOG00000041055	PUM1 (ENSGGOG00000011983) #26	SDC3 (ENSGGOG00000027183) #28	LAPTM5 (ENSGGOG00000017026) #29	MATN1 (ENSGGOG00000007826) #30	PTPRU (ENSGGOG00000006305) #31	ENSGGOG00000003122 #32	SRSF4 (ENSGGOG00000002444) #33	TMEM200B (ENSGGOG00000036267)	EPB41 (ENSGGOG00000004272) #34	OPRD1 (ENSGGOG00000002157) #35
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000167695.b	ENSGT00940000154383.v.a.b ##14	ENSGT00910000147199.b	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Human	MODERN SPECIES		IQCC (ENSG00000160051) #7	CCDC28B (ENSG00000160050) #8	TXLNA (ENSG00000084652) #9	KPNA6 (ENSG00000025800) #10	TMEM39B (ENSG00000121775) #11	KHDRBS1 (ENSG00000121774) #12	ENSG00000288678	PTP4A2 (ENSG00000184007) ##14	SPOCD1 (ENSG00000134668) #15	ADGRB2 (ENSG00000121753) #16	COL16A1 (ENSG00000084636) #17	PEF1 (ENSG00000162517) ##18	HCRTR1 (ENSG00000121764) #19	TINAGL1 (ENSG00000142910) #20	SERINC2 (ENSG00000168528) #21	FABP3 (ENSG00000121769) #22	ZCCHC17 (ENSG00000121766) #23	SNRNP40 (ENSG00000060688) #24	NKAIN1 (ENSG00000084628) #25	PUM1 (ENSG00000134644) #26	SDC3 (ENSG00000162512) #28	LAPTM5 (ENSG00000162511) #29	MATN1 (ENSG00000162510) #30	ENSG00000289710	PTPRU (ENSG00000060656) #31	MECR (ENSG00000116353) #32	SRSF4 (ENSG00000116350) #33	TMEM200B (ENSG00000253304)	EPB41 (ENSG00000159023) #34	OPRD1 (ENSG00000116329) #35	YTHDF2 (ENSG00000198492) #37
Pan	ANCESTRAL SPECIES		ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000167695.b	ENSGT00940000154383.v.a.b ##14	ENSGT00910000147199.b	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.m.b ##18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058.e.a #24	ENSGT00940000159949 #25	ENSGT00940000161069.e.a	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	4	KCTD4 (ENSPTRG00000047173)	GTF2F2 (ENSPTRG00000005840)	GPALPP1 (ENSPTRG00000024388)	NUFIP1 (ENSPTRG00000005838)	ENSPTRG00000048209	TSC22D1 (ENSPTRG00000005837)	SERP2 (ENSPTRG00000049445)	SMIM2 (ENSPTRG00000045031)	LACC1 (ENSPTRG00000005834)	CCDC122 (ENSPTRG00000005833)	ENOX1 (ENSPTRG00000005832)	DNAJC15 (ENSPTRG00000047723)	EPSTI1 (ENSPTRG00000045006)	FAM216B (ENSPTRG00000050984)	TNFSF11 (ENSPTRG00000005827)	ENSPTRG00000050423 #22	AKAP11 (ENSPTRG00000005824)	ENSPTRG00000042691	DGKH (ENSPTRG00000005823)	VWA8 (ENSPTRG00000005820)	RGCC (ENSPTRG00000005819)	ENSPTRG00000048809	NAA16 (ENSPTRG00000005816)	MTRF1 (ENSPTRG00000005815)	KBTBD7 (ENSPTRG00000045760)	ENSPTRG00000050292	KBTBD6 (ENSPTRG00000044355)	WBP4 (ENSPTRG00000005812)	ELF1 (ENSPTRG00000005811)	SLC25A15 (ENSPTRG00000044827)	MRPS31 (ENSPTRG00000005808)
Chimpanzee	MODERN SPECIES		TXLNA (ENSPTRG00000000472) #9	KPNA6 (ENSPTRG00000000471) #10	TMEM39B (ENSPTRG00000000470) #11	KHDRBS1 (ENSPTRG00000000469) #12	ENSPTRG00000052338	PTP4A2 (ENSPTRG00000047405) ##14	ENSPTRG00000047303	SPOCD1 (ENSPTRG00000000466) #15	ADGRB2 (ENSPTRG00000000465) #16	COL16A1 (ENSPTRG00000000464) #17	PEF1 (ENSPTRG00000000463) ##18	HCRTR1 (ENSPTRG00000000462) #19	TINAGL1 (ENSPTRG00000000461) #20	ENSPTRG00000048355	SERINC2 (ENSPTRG00000000458) #21	FABP3 (ENSPTRG00000000457) #22	ZCCHC17 (ENSPTRG00000000456) #23	SNRNP40 (ENSPTRG00000000455) #24	ENSPTRG00000051686	NKAIN1 (ENSPTRG00000000454) #25	ENSPTRG00000034023	PUM1 (ENSPTRG00000000453) #26	SDC3 (ENSPTRG00000000451) #28	LAPTM5 (ENSPTRG00000000450) #29	MATN1 (ENSPTRG00000000449) #30	PTPRU (ENSPTRG00000000447) #31	MECR (ENSPTRG00000000446) #32	SRSF4 (ENSPTRG00000000445) #33	TMEM200B (ENSPTRG00000000444)	EPB41 (ENSPTRG00000000442) #34	OPRD1 (ENSPTRG00000000440) #35
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	317											ENOX1 (ENSPPAG00000026244)	DNAJC15 (ENSPPAG00000023934)	EPSTI1 (ENSPPAG00000020892)	FAM216B (ENSPPAG00000000821)	TNFSF11 (ENSPPAG00000034988)	ENSPPAG00000034821 #22	AKAP11 (ENSPPAG00000034496)	DGKH (ENSPPAG00000026670)
Bonobo	MODERN SPECIES		ENSPPAG00000033019 #8	TXLNA (ENSPPAG00000003695) #9	KPNA6 (ENSPPAG00000017972) #10	TMEM39B (ENSPPAG00000031146) #11	KHDRBS1 (ENSPPAG00000035456) #12	ENSPPAG00000018477	PTP4A2 (ENSPPAG00000032126) ##14	ENSPPAG00000010696 #15	ADGRB2 (ENSPPAG00000031666) #16	ENSPPAG00000035093 #17	PEF1 (ENSPPAG00000035001) ##18	HCRTR1 (ENSPPAG00000029321) #19	TINAGL1 (ENSPPAG00000036194) #20	ENSPPAG00000015380	SERINC2 (ENSPPAG00000003963) #21	FABP3 (ENSPPAG00000029757) #22	ZCCHC17 (ENSPPAG00000030937) #23	SNRNP40 (ENSPPAG00000017296) #24	ENSPPAG00000042046	NKAIN1 (ENSPPAG00000022775) #25	ENSPPAG00000041563	PUM1 (ENSPPAG00000044003) #26	SDC3 (ENSPPAG00000032002) #28	LAPTM5 (ENSPPAG00000030829) #29	MATN1 (ENSPPAG00000003456) #30	ENSPPAG00000022035	PTPRU (ENSPPAG00000001262) #31	MECR (ENSPPAG00000038550) #32	SRSF4 (ENSPPAG00000028357) #33	EPB41 (ENSPPAG00000038163) #34	OPRD1 (ENSPPAG00000041756) #35
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	4	ENSPPYG00000005335	KCTD4 (ENSPPYG00000005334)	GTF2F2 (ENSPPYG00000005333)	GPALPP1 (ENSPPYG00000005332)	NUFIP1 (ENSPPYG00000005331)	TSC22D1 (ENSPPYG00000005330)	SERP2 (ENSPPYG00000014205)	SMIM2 (ENSPPYG00000005328)	LACC1 (ENSPPYG00000005327)	CCDC122 (ENSPPYG00000005326)	ENOX1 (ENSPPYG00000005324)	DNAJC15 (ENSPPYG00000005323)	ENSPPYG00000005322	FAM216B (ENSPPYG00000005321)	TNFSF11 (ENSPPYG00000005320)	ENSPPYG00000034024 #22	AKAP11 (ENSPPYG00000005319)	DGKH (ENSPPYG00000005318)	VWA8 (ENSPPYG00000005317)	RGCC (ENSPPYG00000005316)	NAA16 (ENSPPYG00000005314)	MTRF1 (ENSPPYG00000005313)	KBTBD7 (ENSPPYG00000032922)	KBTBD6 (ENSPPYG00000037658)	WBP4 (ENSPPYG00000005310)	ELF1 (ENSPPYG00000005309)	SLC25A15 (ENSPPYG00000005307)	MRPS31 (ENSPPYG00000005306)	FOXO1 (ENSPPYG00000005304)	ENSPPYG00000005302	COG6 (ENSPPYG00000005301)
Orangutan	MODERN SPECIES		TXLNA (ENSPPYG00000001602) #9	KPNA6 (ENSPPYG00000001603) #10	TMEM39B (ENSPPYG00000001604) #11	KHDRBS1 (ENSPPYG00000001605) #12	PTP4A2 (ENSPPYG00000001606) ##14	ENSPPYG00000001607	SPOCD1 (ENSPPYG00000001608) #15	ADGRB2 (ENSPPYG00000001609) #16	COL16A1 (ENSPPYG00000001610) #17	PEF1 (ENSPPYG00000001611) ##18	HCRTR1 (ENSPPYG00000001612) #19	TINAGL1 (ENSPPYG00000001613) #20	ENSPPYG00000034280	SERINC2 (ENSPPYG00000001615) #21	ENSPPYG00000001614	FABP3 (ENSPPYG00000038558) #22	ZCCHC17 (ENSPPYG00000001617) #23	SNRNP40 (ENSPPYG00000001618) #24	NKAIN1 (ENSPPYG00000001619) #25	PUM1 (ENSPPYG00000001621) #26	SDC3 (ENSPPYG00000001623) #28	LAPTM5 (ENSPPYG00000001624) #29	MATN1 (ENSPPYG00000001625) #30	PTPRU (ENSPPYG00000001627) #31	ENSPPYG00000041302	ENSPPYG00000001628 #32	SRSF4 (ENSPPYG00000001629) #33	TMEM200B (ENSPPYG00000001630)	EPB41 (ENSPPYG00000001631) #34	OPRD1 (ENSPPYG00000001633) #35	YTHDF2 (ENSPPYG00000001634) #37
Tarsier	MODERN SPECIES	4040																FABP3 (ENSTSYG00000000492) #22	ZCCHC17 (ENSTSYG00000000490) #23	SNRNP40 (ENSTSYG00000010363) #24	NKAIN1 (ENSTSYG00000030800) #25
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Bushbaby	MODERN SPECIES	299				ENSOGAG00000004583 #11	KHDRBS1 (ENSOGAG00000004582) #12	ENSOGAG00000026969	PTP4A2 (ENSOGAG00000029603) #14	SPOCD1 (ENSOGAG00000016702) #15	ADGRB2 (ENSOGAG00000006787) #16	COL16A1 (ENSOGAG00000004599) #17	PEF1 (ENSOGAG00000004597) #18	HCRTR1 (ENSOGAG00000004595) #19	TINAGL1 (ENSOGAG00000004594) #20	SERINC2 (ENSOGAG00000013759) #21	PGAM1 (ENSOGAG00000027180)	FABP3 (ENSOGAG00000013757) #22	ZCCHC17 (ENSOGAG00000013749) #23	ENSOGAG00000004538 #24	NKAIN1 (ENSOGAG00000004537) #25	PUM1 (ENSOGAG00000011063) #26	SDC3 (ENSOGAG00000031276) #28	ENSOGAG00000033118	LAPTM5 (ENSOGAG00000014958) #29	MATN1 (ENSOGAG00000014950) #30	PTPRU (ENSOGAG00000015523) #31	MECR (ENSOGAG00000015520) #32	SRSF4 (ENSOGAG00000015515) #33	TMEM200B (ENSOGAG00000025912)	EPB41 (ENSOGAG00000001603) #34	ENSOGAG00000025718	OPRD1 (ENSOGAG00000025601) #35
Lemuriformes	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Lemuriformes_a	ANCESTRAL SPECIES	58	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00910000147199	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30
Greater bamboo lemur	MODERN SPECIES	1298							PTP4A2 (ENSPSMG00000002248) #14	ENSPSMG00000002141	SPOCD1 (ENSPSMG00000002126) #15	ADGRB2 (ENSPSMG00000001920) #16	COL16A1 (ENSPSMG00000001723) #17	PEF1 (ENSPSMG00000001687) #18	HCRTR1 (ENSPSMG00000001664) #19	TINAGL1 (ENSPSMG00000001632) #20	SERINC2 (ENSPSMG00000001571) #21	FABP3 (ENSPSMG00000001498) #22	ZCCHC17 (ENSPSMG00000001472) #23	SNRNP40 (ENSPSMG00000001390) #24	NKAIN1 (ENSPSMG00000001353) #25
Coquerels sifaka	MODERN SPECIES	257	DCDC2B (ENSPCOG00000014846)	IQCC (ENSPCOG00000018338) #7	CCDC28B (ENSPCOG00000020784) #8	TXLNA (ENSPCOG00000023840) #9	KPNA6 (ENSPCOG00000002597) #10	TMEM39B (ENSPCOG00000013093) #11	ENSPCOG00000019588 #12	PTP4A2 (ENSPCOG00000014261) #14	SPOCD1 (ENSPCOG00000023602) #15	ADGRB2 (ENSPCOG00000020386) #16	COL16A1 (ENSPCOG00000018868) #17	PEF1 (ENSPCOG00000023703) #18	HCRTR1 (ENSPCOG00000000086) #19	TINAGL1 (ENSPCOG00000022206) #20	SERINC2 (ENSPCOG00000017242) #21	FABP3 (ENSPCOG00000014637) #22	ZCCHC17 (ENSPCOG00000024007) #23	SNRNP40 (ENSPCOG00000019627) #24	NKAIN1 (ENSPCOG00000025478) #25	PUM1 (ENSPCOG00000004398) #26	SDC3 (ENSPCOG00000021485) #28	LAPTM5 (ENSPCOG00000017689) #29	MATN1 (ENSPCOG00000022136) #30
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	11	TMEM234 (ENSMICG00000017799)	DCDC2B (ENSMICG00000017798)	CCDC28B (ENSMICG00000017797) #8	TXLNA (ENSMICG00000043957) #9	KPNA6 (ENSMICG00000001434) #10	TMEM39B (ENSMICG00000001430) #11	KHDRBS1 (ENSMICG00000001428) #12	PTP4A2 (ENSMICG00000001424) #14	SPOCD1 (ENSMICG00000001411) #15	ADGRB2 (ENSMICG00000001400) #16	COL16A1 (ENSMICG00000001377) #17	PEF1 (ENSMICG00000001374) #18	HCRTR1 (ENSMICG00000001367) #19	TINAGL1 (ENSMICG00000001362) #20	SERINC2 (ENSMICG00000009364) #21	ENSMICG00000009359 #22	ENSMICG00000009354 #23	GUCA2B (ENSMICG00000011582)	GUCA2A (ENSMICG00000010437)	FOXJ3 (ENSMICG00000010441)	RIMKLA (ENSMICG00000014895)	ZMYND12 (ENSMICG00000043809)	PPCS (ENSMICG00000014936)	CCDC30 (ENSMICG00000014950)	PPIH (ENSMICG00000014971)	ENSMICG00000014984	ENSMICG00000033725	CLDN19 (ENSMICG00000029190)	P3H1 (ENSMICG00000015012)	C1orf50 (ENSMICG00000015041)	TMEM269 (ENSMICG00000044647)
Mouse lemur	MODERN SPECIES	7	MRPL38 (ENSMICG00000045774)	FBF1 (ENSMICG00000007674)	ACOX1 (ENSMICG00000033103)	TEN1 (ENSMICG00000042402)	CDK3 (ENSMICG00000045151)	EVPL (ENSMICG00000007705)	SRP68 (ENSMICG00000007726)	GALR2 (ENSMICG00000038284)	ZACN (ENSMICG00000007743)	EXOC7 (ENSMICG00000007750)	FOXJ1 (ENSMICG00000030811)	RNF157 (ENSMICG00000013253)	UBALD2 (ENSMICG00000034419)	ENSMICG00000013287	PRPSAP1 (ENSMICG00000013330)	ENSMICG00000036750 #22	SPHK1 (ENSMICG00000013341)	UBE2O (ENSMICG00000013365)	AANAT (ENSMICG00000047145)	RHBDF2 (ENSMICG00000013408)	CYGB (ENSMICG00000013429)	ENSMICG00000037981	PRCD (ENSMICG00000046674)	ENSMICG00000033881	ST6GALNAC2 (ENSMICG00000007518)	ST6GALNAC1 (ENSMICG00000030490)	ENSMICG00000032525	JMJD6 (ENSMICG00000016945)	METTL23 (ENSMICG00000016953)	SRSF2 (ENSMICG00000016956)	MFSD11 (ENSMICG00000016959)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Tree shrew	MODERN SPECIES	2167																FABP3 (ENSTBEG00000009632) #22	ZCCHC17 (ENSTBEG00000009625) #23	SNRNP40 (ENSTBEG00000009621) #24
Glires	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Rodentia	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Kangaroo rat	MODERN SPECIES	370	Ccdc28b (ENSDORG00000029193) #8	Txlna (ENSDORG00000000197) #9	Kpna6 (ENSDORG00000007257) #10	Tmem39b (ENSDORG00000015092) #11	Khdrbs1 (ENSDORG00000011530) #12	Ptp4a2 (ENSDORG00000029587) #14	ENSDORG00000014399 #15	Adgrb2 (ENSDORG00000014398) #16	ENSDORG00000026075	ENSDORG00000014393	Pef1 (ENSDORG00000014391) #18	Hcrtr1 (ENSDORG00000014389) #19	Tinagl1 (ENSDORG00000014387) #20	Ldc1 (ENSDORG00000029290)	Serinc2 (ENSDORG00000001817) #21	Fabp3 (ENSDORG00000024318) #22	Zcchc17 (ENSDORG00000004128) #23	Snrnp40 (ENSDORG00000004126) #24	ENSDORG00000029852	Usp1 (ENSDORG00000008268)	Dock7 (ENSDORG00000008269)	Angptl3 (ENSDORG00000008279)	Atg4c (ENSDORG00000027209)	Alg6 (ENSDORG00000013729)	Efcab7 (ENSDORG00000013731)	Pgm1 (ENSDORG00000006501)	Ror1 (ENSDORG00000014715)	Cachd1 (ENSDORG00000011104)	Raver2 (ENSDORG00000002498)	Jak1 (ENSDORG00000013462)	Ak4 (ENSDORG00000023966)
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Muroidea	ANCESTRAL SPECIES	3	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	480	Dcdc2b (ENSNGAG00000012094)	Iqcc (ENSNGAG00000016738) #7	Ccdc28b (ENSNGAG00000013903) #8	Txlna (ENSNGAG00000005336) #9	Kpna6 (ENSNGAG00000019228) #10	Tmem39b (ENSNGAG00000003422) #11	Khdrbs1 (ENSNGAG00000021015) #12	ENSNGAG00000017009 #14	ENSNGAG00000017658 #15	Adgrb2 (ENSNGAG00000015374) #16	Col16a1 (ENSNGAG00000018680) #17	Pef1 (ENSNGAG00000020163) #18	Hcrtr1 (ENSNGAG00000021551) #19	Tinagl1 (ENSNGAG00000010974) #20	ENSNGAG00000021891 #21	Fabp3 (ENSNGAG00000022125) #22	Zcchc17 (ENSNGAG00000022689) #23	Snrnp40 (ENSNGAG00000023014) #24	Nkain1 (ENSNGAG00000010072) #25
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Chinese hamster chok1gshd	MODERN SPECIES	111	Iqcc (ENSCGRG00001015818) #7	Ccdc28b (ENSCGRG00001015232) #8	Txlna (ENSCGRG00001000523) #9	Kpna6 (ENSCGRG00001024507) #10	Tmem39b (ENSCGRG00001017232) #11	Khdrbs1 (ENSCGRG00001018212) #12	Ptp4a2 (ENSCGRG00001017228) #14	ENSCGRG00001015782 #15	Adgrb2 (ENSCGRG00001008451) #16	Col16a1 (ENSCGRG00001016090) #17	Pef1 (ENSCGRG00001012610) #18	Hcrtr1 (ENSCGRG00001011434) #19	Tinagl1 (ENSCGRG00001024931) #20	ENSCGRG00001023178	Serinc2 (ENSCGRG00001018501) #21	Fabp3 (ENSCGRG00001015716) #22	Zcchc17 (ENSCGRG00001014387) #23	Snrnp40 (ENSCGRG00001004488) #24	Nkain1 (ENSCGRG00001009372) #25	ENSCGRG00001012052	Pum1 (ENSCGRG00001024949) #26	Sdc3 (ENSCGRG00001023681) #28	Laptm5 (ENSCGRG00001021108) #29	Matn1 (ENSCGRG00001019479) #30	Ptpru (ENSCGRG00001023937) #31	Mecr (ENSCGRG00001024597) #32	Srsf4 (ENSCGRG00001021115) #33	Tmem200b (ENSCGRG00001010757)	Epb41 (ENSCGRG00001021983) #34	ENSCGRG00001024915	Oprd1 (ENSCGRG00001010255) #35
Golden Hamster	MODERN SPECIES	709	Ccdc28b (ENSMAUG00000008126) #8	Txlna (ENSMAUG00000017494) #9	Kpna6 (ENSMAUG00000015502) #10	Tmem39b (ENSMAUG00000012747) #11	Khdrbs1 (ENSMAUG00000014931) #12	ENSMAUG00000021254 #14	ENSMAUG00000014337 #15	Adgrb2 (ENSMAUG00000013391) #16	ENSMAUG00000019908	ENSMAUG00000017808	ENSMAUG00000016866 #18	Hcrtr1 (ENSMAUG00000011268) #19	Tinagl1 (ENSMAUG00000001156) #20	Ldc1 (ENSMAUG00000021361)	Serinc2 (ENSMAUG00000012888) #21	Fabp3 (ENSMAUG00000003807) #22	Zcchc17 (ENSMAUG00000005269) #23	Snrnp40 (ENSMAUG00000016062) #24	Nkain1 (ENSMAUG00000010811) #25	Pum1 (ENSMAUG00000022090) #26	Laptm5 (ENSMAUG00000013566) #29	Matn1 (ENSMAUG00000019156) #30	Ptpru (ENSMAUG00000016330) #31	Mecr (ENSMAUG00000021996) #32	Srsf4 (ENSMAUG00000021940) #33	Tmem200b (ENSMAUG00000021672)	ENSMAUG00000001636 #34	Oprd1 (ENSMAUG00000012704) #35	ENSMAUG00000010032 #37	Gmeb1 (ENSMAUG00000008912)	Taf12 (ENSMAUG00000019991)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Prairie vole	MODERN SPECIES	1	Ccdc28b (ENSMOCG00000017821) #8	Txlna (ENSMOCG00000012537) #9	Kpna6 (ENSMOCG00000014850) #10	Tmem39b (ENSMOCG00000001707) #11	Khdrbs1 (ENSMOCG00000022233) #12	ENSMOCG00000011243	Ptp4a2 (ENSMOCG00000009816) #14	ENSMOCG00000013559 #15	Adgrb2 (ENSMOCG00000000435) #16	Col16a1 (ENSMOCG00000009865) #17	ENSMOCG00000016846 #18	Hcrtr1 (ENSMOCG00000015876) #19	Tinagl1 (ENSMOCG00000021429) #20	Ldc1 (ENSMOCG00000014529)	Serinc2 (ENSMOCG00000002463) #21	Fabp3 (ENSMOCG00000021759) #22	Zcchc17 (ENSMOCG00000014937) #23	Snrnp40 (ENSMOCG00000000680) #24	Nkain1 (ENSMOCG00000019951) #25	Pum1 (ENSMOCG00000015463) #26	Sdc3 (ENSMOCG00000020345) #28	Laptm5 (ENSMOCG00000014297) #29	Matn1 (ENSMOCG00000011816) #30	Ptpru (ENSMOCG00000019862) #31	Mecr (ENSMOCG00000017926) #32	Srsf4 (ENSMOCG00000013319) #33	Tmem200b (ENSMOCG00000014010)	Epb41 (ENSMOCG00000022373) #34	Oprd1 (ENSMOCG00000018388) #35	Ythdf2 (ENSMOCG00000018361) #37	Gmeb1 (ENSMOCG00000012332)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	21	Ebf1 (ENSPEMG00000022652)	Clint1 (ENSPEMG00000022779)	Lsm11 (ENSPEMG00000028614)	Thg1l (ENSPEMG00000022707)	Sox30 (ENSPEMG00000000554)	Adam19 (ENSPEMG00000011893)	Nipal4 (ENSPEMG00000030993)	Cyfip2 (ENSPEMG00000013244)	Fndc9 (ENSPEMG00000030039)	Itk (ENSPEMG00000014168)	Garin3 (ENSPEMG00000007819)	Med7 (ENSPEMG00000019778)	Havcr2 (ENSPEMG00000019286)	ENSPEMG00000029530	ENSPEMG00000019712	ENSPEMG00000028909 #22	ENSPEMG00000025066	ENSPEMG00000024940	ENSPEMG00000030816	Timd4 (ENSPEMG00000012210)	Sgcd (ENSPEMG00000011649)	ENSPEMG00000027931	Rack1 (ENSPEMG00000011124)	Trim41 (ENSPEMG00000017879)	Trim7 (ENSPEMG00000012640)	Irgm1 (ENSPEMG00000018645)	ENSPEMG00000028500	ENSPEMG00000015679	ENSPEMG00000018053	ENSPEMG00000029540	Ifi47 (ENSPEMG00000017464)
Northern American deer mouse	MODERN SPECIES	389																ENSPEMG00000030321 #22
Northern American deer mouse	MODERN SPECIES	11	Dcdc2b (ENSPEMG00000024085)	Iqcc (ENSPEMG00000022559) #7	Ccdc28b (ENSPEMG00000026808) #8	Txlna (ENSPEMG00000017204) #9	Kpna6 (ENSPEMG00000011504) #10	Tmem39b (ENSPEMG00000024093) #11	Khdrbs1 (ENSPEMG00000024209) #12	Ptp4a2 (ENSPEMG00000026135) #14	Adgrb2 (ENSPEMG00000002482) #16	Col16a1 (ENSPEMG00000003734) #17	Pef1 (ENSPEMG00000015241) #18	Hcrtr1 (ENSPEMG00000001404) #19	Tinagl1 (ENSPEMG00000009430) #20	Ldc1 (ENSPEMG00000018044)	Serinc2 (ENSPEMG00000005498) #21	ENSPEMG00000015403 #22	Zcchc17 (ENSPEMG00000015853) #23	Snrnp40 (ENSPEMG00000016783) #24	Nkain1 (ENSPEMG00000000116) #25	Pum1 (ENSPEMG00000010009) #26	Sdc3 (ENSPEMG00000015709) #28	Laptm5 (ENSPEMG00000016483) #29	Matn1 (ENSPEMG00000017513) #30	Ptpru (ENSPEMG00000010874) #31	Mecr (ENSPEMG00000009582) #32	Srsf4 (ENSPEMG00000003365) #33	Tmem200b (ENSPEMG00000012688)	Epb41 (ENSPEMG00000016438) #34	Oprd1 (ENSPEMG00000007805) #35	Ythdf2 (ENSPEMG00000014903) #37	Taf12 (ENSPEMG00000015879)
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Mus	ANCESTRAL SPECIES	3	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00860000135801	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00860000135801	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Mouse	MODERN SPECIES	13	Iqcc (ENSMUSG00000040795) #7	Ccdc28b (ENSMUSG00000028795) #8	Txlna (ENSMUSG00000053841) #9	Kpna6 (ENSMUSG00000003731) #10	Tmem39b (ENSMUSG00000053730) #11	Khdrbs1 (ENSMUSG00000028790) #12	Ptp4a2 (ENSMUSG00000028788) #14	Spocd1 (ENSMUSG00000028784) #15	Adgrb2 (ENSMUSG00000028782) #16	Col16a1 (ENSMUSG00000040690) #17	Pef1 (ENSMUSG00000028779) #18	Hcrtr1 (ENSMUSG00000028778) #19	Tinagl1 (ENSMUSG00000028776) #20	Ldc1 (ENSMUSG00000023120)	Serinc2 (ENSMUSG00000023232) #21	Fabp3 (ENSMUSG00000028773) #22	Zcchc17 (ENSMUSG00000028772) #23	Snrnp40 (ENSMUSG00000074088) #24	Nkain1 (ENSMUSG00000078532) #25	Pum1 (ENSMUSG00000028580) #26	Sdc3 (ENSMUSG00000025743) #28	Laptm5 (ENSMUSG00000028581) #29	Matn1 (ENSMUSG00000040533) #30	Ptpru (ENSMUSG00000028909) #31	Mecr (ENSMUSG00000028910) #32	Srsf4 (ENSMUSG00000028911) #33	Tmem200b (ENSMUSG00000070720)	Epb41 (ENSMUSG00000028906) #34	Oprd1 (ENSMUSG00000050511) #35	Ythdf2 (ENSMUSG00000040025) #37	Gmeb1 (ENSMUSG00000028901)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.s.b.b.c #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00860000135801	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00860000135912	ENSGT00940000157669 #35	ENSGT00940000156761 #37
spretus	MODERN SPECIES	13	Ccdc28b (MGP_SPRETEiJ_G0027510) #8	Txlna (MGP_SPRETEiJ_G0027511) #9	Kpna6 (MGP_SPRETEiJ_G0027512) #10	Tmem39b (MGP_SPRETEiJ_G0027513) #11	Khdrbs1 (MGP_SPRETEiJ_G0027514) #12	Ptp4a2 (MGP_SPRETEiJ_G0027515) #14	MGP_SPRETEiJ_G0027516 #15	Adgrb2 (MGP_SPRETEiJ_G0027517) #16	Col16a1 (MGP_SPRETEiJ_G0027518) #17	Pef1 (MGP_SPRETEiJ_G0027519) #18	Hcrtr1 (MGP_SPRETEiJ_G0027520) #19	Tinagl1 (MGP_SPRETEiJ_G0027521) #20	Ldc1 (MGP_SPRETEiJ_G0027522)	Serinc2 (MGP_SPRETEiJ_G0027523) #21	MGP_SPRETEiJ_G0027524	Fabp3 (MGP_SPRETEiJ_G0027525) #22	Zcchc17 (MGP_SPRETEiJ_G0027526) #23	Snrnp40 (MGP_SPRETEiJ_G0027527) #24	Nkain1 (MGP_SPRETEiJ_G0027528) #25	Pum1 (MGP_SPRETEiJ_G0027529) #26	Sdc3 (MGP_SPRETEiJ_G0027530) #28	Laptm5 (MGP_SPRETEiJ_G0027531) #29	Matn1 (MGP_SPRETEiJ_G0027532) #30	Ptpru (MGP_SPRETEiJ_G0027533) #31	MGP_SPRETEiJ_G0027534 #32	Srsf4 (MGP_SPRETEiJ_G0027535) #33	Tmem200b (MGP_SPRETEiJ_G0027536)	Epb41 (MGP_SPRETEiJ_G0027537) #34	MGP_SPRETEiJ_G0027538	Oprd1 (MGP_SPRETEiJ_G0027539) #35	MGP_SPRETEiJ_G0027540 #37
Steppe mouse	MODERN SPECIES	3021														Ldc1 (ENSMSIG00000031904)	Serinc2 (ENSMSIG00000031905) #21	Fabp3 (ENSMSIG00000031907) #22	Zcchc17 (ENSMSIG00000031908) #23	Snrnp40 (ENSMSIG00000031909) #24	Nkain1 (ENSMSIG00000031910) #25	Pum1 (ENSMSIG00000031911) #26	Sdc3 (ENSMSIG00000031914) #28	Laptm5 (ENSMSIG00000031916) #29	Matn1 (ENSMSIG00000031917) #30	ENSMSIG00000031920	Ptpru (ENSMSIG00000031924) #31	Mecr (ENSMSIG00000031925) #32	Srsf4 (ENSMSIG00000031926) #33
Ryukyu mouse	MODERN SPECIES	13	Ccdc28b (MGP_CAROLIEiJ_G0026530) #8	MGP_CAROLIEiJ_G0026531 #9	Kpna6 (MGP_CAROLIEiJ_G0026532) #10	Tmem39b (MGP_CAROLIEiJ_G0026533) #11	Khdrbs1 (MGP_CAROLIEiJ_G0026534) #12	Ptp4a2 (MGP_CAROLIEiJ_G0026535) #14	MGP_CAROLIEiJ_G0026536 #15	Adgrb2 (MGP_CAROLIEiJ_G0026537) #16	Col16a1 (MGP_CAROLIEiJ_G0026538) #17	Pef1 (MGP_CAROLIEiJ_G0026539) #18	Hcrtr1 (MGP_CAROLIEiJ_G0026540) #19	Tinagl1 (MGP_CAROLIEiJ_G0026541) #20	MGP_CAROLIEiJ_G0026542	Serinc2 (MGP_CAROLIEiJ_G0026543) #21	MGP_CAROLIEiJ_G0026544	Fabp3 (MGP_CAROLIEiJ_G0026545) #22	Zcchc17 (MGP_CAROLIEiJ_G0026546) #23	Snrnp40 (MGP_CAROLIEiJ_G0026547) #24	Nkain1 (MGP_CAROLIEiJ_G0026548) #25	Pum1 (MGP_CAROLIEiJ_G0026549) #26	Sdc3 (MGP_CAROLIEiJ_G0026550) #28	Laptm5 (MGP_CAROLIEiJ_G0026551) #29	Matn1 (MGP_CAROLIEiJ_G0026552) #30	Ptpru (MGP_CAROLIEiJ_G0026553) #31	Mecr (MGP_CAROLIEiJ_G0026554) #32	Srsf4 (MGP_CAROLIEiJ_G0026555) #33	Tmem200b (MGP_CAROLIEiJ_G0026556)	Epb41 (MGP_CAROLIEiJ_G0026557) #34	MGP_CAROLIEiJ_G0026558	Oprd1 (MGP_CAROLIEiJ_G0026559) #35	Gmeb1 (MGP_CAROLIEiJ_G0026561)
Shrew mouse	MODERN SPECIES	19	Ccdc28b (MGP_PahariEiJ_G0028862) #8	MGP_PahariEiJ_G0028863 #9	Kpna6 (MGP_PahariEiJ_G0028864) #10	MGP_PahariEiJ_G0028865 #11	Khdrbs1 (MGP_PahariEiJ_G0028866) #12	Ptp4a2 (MGP_PahariEiJ_G0028867) #14	MGP_PahariEiJ_G0028868 #15	Adgrb2 (MGP_PahariEiJ_G0028869) #16	Col16a1 (MGP_PahariEiJ_G0028870) #17	Pef1 (MGP_PahariEiJ_G0028871) #18	Hcrtr1 (MGP_PahariEiJ_G0028872) #19	Tinagl1 (MGP_PahariEiJ_G0028873) #20	Ldc1 (MGP_PahariEiJ_G0028874)	Serinc2 (MGP_PahariEiJ_G0028875) #21	MGP_PahariEiJ_G0028876	Fabp3 (MGP_PahariEiJ_G0028877) #22	Zcchc17 (MGP_PahariEiJ_G0028878) #23	Snrnp40 (MGP_PahariEiJ_G0028879) #24	Nkain1 (MGP_PahariEiJ_G0028880) #25	Pum1 (MGP_PahariEiJ_G0028881) #26	Sdc3 (MGP_PahariEiJ_G0028882) #28	Laptm5 (MGP_PahariEiJ_G0028883) #29	Matn1 (MGP_PahariEiJ_G0028884) #30	Ptpru (MGP_PahariEiJ_G0028885) #31	Mecr (MGP_PahariEiJ_G0028886) #32	Srsf4 (MGP_PahariEiJ_G0028887) #33	Tmem200b (MGP_PahariEiJ_G0028888)	Epb41 (MGP_PahariEiJ_G0028889) #34	MGP_PahariEiJ_G0028890	Oprd1 (MGP_PahariEiJ_G0028891) #35	Ythdf2 (MGP_PahariEiJ_G0028892) #37
Rat	DUPLICATION
Rat	MODERN SPECIES	15	Penk (ENSRNOG00000008943)	Sdr16c6 (ENSRNOG00000067216)	Sdr16c6 (ENSRNOG00000040151)	Sdr16c5 (ENSRNOG00000008871)	Chchd7 (ENSRNOG00000031769)	Plag1 (ENSRNOG00000008846)	LOC100364265 (ENSRNOG00000012088)	Mos (ENSRNOG00000008567)	Rps20-ps10 (ENSRNOG00000008555)	Lyn (ENSRNOG00000008180)	Tgs1 (ENSRNOG00000008156)	Tmem68 (ENSRNOG00000008872)	Xkr4 (ENSRNOG00000027276)	Cyld-ps1 (ENSRNOG00000008861)	Rp1 (ENSRNOG00000008807)	ENSRNOG00000065942 #22	Sumo4 (ENSRNOG00000069967)	Sox17 (ENSRNOG00000027357)	Mrpl15 (ENSRNOG00000008566)	Lypla1 (ENSRNOG00000008320)	Tcea1 (ENSRNOG00000022323)	Rgs20 (ENSRNOG00000008100)	Atp6v1h (ENSRNOG00000030862)	Oprk1 (ENSRNOG00000007647)	Npbwr1 (ENSRNOG00000007640)	Rb1cc1 (ENSRNOG00000006833)	Alkal1 (ENSRNOG00000048703)	St18 (ENSRNOG00000006200)	AABR07046956.1 (ENSRNOG00000040219)	Pcmtd1 (ENSRNOG00000005730)	ENSRNOG00000064844
Rat	MODERN SPECIES	15	Iqcc (ENSRNOG00000048553) #7	Ccdc28b (ENSRNOG00000047578) #8	Txlna (ENSRNOG00000048242) #9	Kpna6 (ENSRNOG00000000127) #10	Tmem39b (ENSRNOG00000023746) #11	Khdrbs1 (ENSRNOG00000046794) #12	Ptp4a2 (ENSRNOG00000050044) #14	ENSRNOG00000064683 #15	Adgrb2 (ENSRNOG00000014375) #16	Col16a1 (ENSRNOG00000031475) #17	Pef1 (ENSRNOG00000013972) #18	Hcrtr1 (ENSRNOG00000013838) #19	Tinagl1 (ENSRNOG00000013179) #20	Ldc1 (ENSRNOG00000024788)	Serinc2 (ENSRNOG00000012989) #21	Fabp3 (ENSRNOG00000012879) #22	Zcchc17 (ENSRNOG00000012266) #23	Snrnp40 (ENSRNOG00000012219) #24	Nkain1 (ENSRNOG00000011445) #25	Pum1 (ENSRNOG00000011709) #26	Sdc3 (ENSRNOG00000011927) #28	Laptm5 (ENSRNOG00000011054) #29	Matn1 (ENSRNOG00000010932) #30	Ptpru (ENSRNOG00000013515) #31	Mecr (ENSRNOG00000028047) #32	Srsf4 (ENSRNOG00000010007) #33	Tmem200b (ENSRNOG00000065288)	Epb41 (ENSRNOG00000010037) #34	Oprd1 (ENSRNOG00000010531) #35	Ythdf2 (ENSRNOG00000010892) #37	Gmeb1 (ENSRNOG00000010910)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Long-tailed chinchilla	MODERN SPECIES	159	DCDC2B (ENSCLAG00000007816)	IQCC (ENSCLAG00000008687) #7	CCDC28B (ENSCLAG00000007795) #8	TXLNA (ENSCLAG00000011184) #9	KPNA6 (ENSCLAG00000014985) #10	TMEM39B (ENSCLAG00000015108) #11	KHDRBS1 (ENSCLAG00000015761) #12	PTP4A2 (ENSCLAG00000012319) #14	ADGRB2 (ENSCLAG00000008574) #16	COL16A1 (ENSCLAG00000009542) #17	ENSCLAG00000013223	PEF1 (ENSCLAG00000009480) #18	HCRTR1 (ENSCLAG00000015340) #19	TINAGL1 (ENSCLAG00000009256) #20	SERINC2 (ENSCLAG00000014936) #21	FABP3 (ENSCLAG00000009015) #22	ZCCHC17 (ENSCLAG00000008794) #23	SNRNP40 (ENSCLAG00000007507) #24	NKAIN1 (ENSCLAG00000007310) #25	PUM1 (ENSCLAG00000007662) #26	SDC3 (ENSCLAG00000010987) #28	LAPTM5 (ENSCLAG00000009573) #29	MATN1 (ENSCLAG00000008049) #30	PTPRU (ENSCLAG00000014778) #31	MECR (ENSCLAG00000010792) #32	ENSCLAG00000017721	SRSF4 (ENSCLAG00000009008) #33	EPB41 (ENSCLAG00000008568) #34	OPRD1 (ENSCLAG00000010788) #35	YTHDF2 (ENSCLAG00000007438) #37	GMEB1 (ENSCLAG00000006804)
Degu	MODERN SPECIES	204	TXLNA (ENSODEG00000003515) #9	KPNA6 (ENSODEG00000003468) #10	TMEM39B (ENSODEG00000003418) #11	KHDRBS1 (ENSODEG00000003368) #12	ENSODEG00000003337	ENSODEG00000018961	ENSODEG00000004690 #14	ENSODEG00000004659	ENSODEG00000004641 #15	ADGRB2 (ENSODEG00000004337) #16	COL16A1 (ENSODEG00000004050) #17	PEF1 (ENSODEG00000003947) #18	HCRTR1 (ENSODEG00000003919) #19	TINAGL1 (ENSODEG00000003816) #20	SERINC2 (ENSODEG00000003724) #21	FABP3 (ENSODEG00000003694) #22	ENSODEG00000003683 #23	SNRNP40 (ENSODEG00000003666) #24	NKAIN1 (ENSODEG00000003633) #25	ENSODEG00000003597	PUM1 (ENSODEG00000003465) #26	SDC3 (ENSODEG00000003364) #28	ENSODEG00000003328	LAPTM5 (ENSODEG00000003300) #29	MATN1 (ENSODEG00000003275) #30	PTPRU (ENSODEG00000003405) #31	MECR (ENSODEG00000003260) #32	SRSF4 (ENSODEG00000003230) #33	TMEM200B (ENSODEG00000003209)	ENSODEG00000003196 #34	ENSODEG00000003178
Guinea pig	MODERN SPECIES	25	ENSCPOG00000034197 #7	CCDC28B (ENSCPOG00000011980) #8	TXLNA (ENSCPOG00000011977) #9	KPNA6 (ENSCPOG00000011972) #10	TMEM39B (ENSCPOG00000006494) #11	KHDRBS1 (ENSCPOG00000024148) #12	ENSCPOG00000020765 #14	ENSCPOG00000007225 #15	ADGRB2 (ENSCPOG00000007198) #16	ENSCPOG00000007157	COL16A1 (ENSCPOG00000040230) #17	PEF1 (ENSCPOG00000007151) #18	HCRTR1 (ENSCPOG00000007144) #19	TINAGL1 (ENSCPOG00000022228) #20	SERINC2 (ENSCPOG00000004531) #21	FABP3 (ENSCPOG00000031850) #22	ENSCPOG00000000106 #23	SNRNP40 (ENSCPOG00000004486) #24	NKAIN1 (ENSCPOG00000005407) #25	PUM1 (ENSCPOG00000031613) #26	SDC3 (ENSCPOG00000022452) #28	LAPTM5 (ENSCPOG00000007128) #29	MATN1 (ENSCPOG00000010146) #30	ENSCPOG00000001380	PTPRU (ENSCPOG00000000424) #31	MECR (ENSCPOG00000037475) #32	SRSF4 (ENSCPOG00000036234) #33	TMEM200B (ENSCPOG00000020258)	EPB41 (ENSCPOG00000007254) #34	OPRD1 (ENSCPOG00000039511) #35	YTHDF2 (ENSCPOG00000019907) #37
Naked mole-rat female	MODERN SPECIES	26	DCDC2B (ENSHGLG00000011118)	ENSHGLG00000038406 #7	CCDC28B (ENSHGLG00000012406) #8	TXLNA (ENSHGLG00000011869) #9	KPNA6 (ENSHGLG00000011028) #10	TMEM39B (ENSHGLG00000012355) #11	KHDRBS1 (ENSHGLG00000011935) #12	PTP4A2 (ENSHGLG00000037737) #14	SPOCD1 (ENSHGLG00000017620) #15	ADGRB2 (ENSHGLG00000019091) #16	COL16A1 (ENSHGLG00000012914) #17	PEF1 (ENSHGLG00000043182) #18	HCRTR1 (ENSHGLG00000013949) #19	TINAGL1 (ENSHGLG00000012932) #20	SERINC2 (ENSHGLG00000011176) #21	FABP3 (ENSHGLG00000010081) #22	ENSHGLG00000019323 #23	ENSHGLG00000016092 #24	NKAIN1 (ENSHGLG00000036969) #25	Pum1 (ENSHGLG00000013819) #26	SDC3 (ENSHGLG00000033191) #28	LAPTM5 (ENSHGLG00000011268) #29	ENSHGLG00000018463 #30	ENSHGLG00000040884	ENSHGLG00000034685	ENSHGLG00000045877	ENSHGLG00000014761 #31	MECR (ENSHGLG00000012855) #32	SRSF4 (ENSHGLG00000011842) #33	TMEM200B (ENSHGLG00000049796)	EPB41 (ENSHGLG00000012118) #34
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005020761 #7	CCDC28B (ENSSVLG00005020735) #8	TXLNA (ENSSVLG00005020708) #9	KPNA6 (ENSSVLG00005020665) #10	TMEM39B (ENSSVLG00005020611) #11	KHDRBS1 (ENSSVLG00005020568) #12	PTP4A2 (ENSSVLG00005020371) #14	ENSSVLG00005020176 #15	ADGRB2 (ENSSVLG00005019143) #16	COL16A1 (ENSSVLG00005018905) #17	PEF1 (ENSSVLG00005018866) #18	HCRTR1 (ENSSVLG00005018697) #19	TINAGL1 (ENSSVLG00005018633) #20	ENSSVLG00005018517	SERINC2 (ENSSVLG00005018336) #21	ENSSVLG00005018275 #22	ENSSVLG00005017969 #23	SNRNP40 (ENSSVLG00005017915) #24	NKAIN1 (ENSSVLG00005017873) #25	ENSSVLG00005017810	PUM1 (ENSSVLG00005017124) #26	SDC3 (ENSSVLG00005016980) #28	LAPTM5 (ENSSVLG00005016884) #29	MATN1 (ENSSVLG00005016798) #30	PTPRU (ENSSVLG00005016704) #31	MECR (ENSSVLG00005016630) #32	SRSF4 (ENSSVLG00005016599) #33	TMEM200B (ENSSVLG00005016580)	EPB41 (ENSSVLG00005014395) #34	OPRD1 (ENSSVLG00005012967) #35	ENSSVLG00005012949
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005017780	ENSSVLG00005017761	ENSSVLG00005017706	ENSSVLG00005017467	ENSSVLG00005017010	FAM177B (ENSSVLG00005016899)	DISP1 (ENSSVLG00005016863)	TLR5 (ENSSVLG00005016843)	ENSSVLG00005016801	SUSD4 (ENSSVLG00005016664)	CCDC185 (ENSSVLG00005016646)	CAPN8 (ENSSVLG00005016359)	CAPN2 (ENSSVLG00005016131)	TP53BP2 (ENSSVLG00005015950)	FBXO28 (ENSSVLG00005015889)	ENSSVLG00005015831 #22	ENSSVLG00005015789	DEGS1 (ENSSVLG00005015737)	NVL (ENSSVLG00005014283)	CNIH4 (ENSSVLG00005013000)	WDR26 (ENSSVLG00005012677)	CNIH3 (ENSSVLG00005012576)	ENSSVLG00005012453	ENSSVLG00005012320	ENSSVLG00005012197	LBR (ENSSVLG00005012135)	ENSSVLG00005011796	ENSSVLG00005011720	ENSSVLG00005011663	ENSSVLG00005011588	BOP1 (ENSSVLG00005011521)
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.y.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.t #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00900000142807	ENSGT00980000198702	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.y.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761.j #37	ENSGT00410000025596.a.b
Arctic ground squirrel	MODERN SPECIES	92				TMEM39B (ENSUPAG00010018807) #11	KHDRBS1 (ENSUPAG00010018830) #12	ENSUPAG00010018849	PTP4A2 (ENSUPAG00010018860) #14	ENSUPAG00010018876 #15	ADGRB2 (ENSUPAG00010018905) #16	COL16A1 (ENSUPAG00010019281) #17	PEF1 (ENSUPAG00010019416) #18	HCRTR1 (ENSUPAG00010019430) #19	TINAGL1 (ENSUPAG00010019451) #20	ENSUPAG00010019492	SERINC2 (ENSUPAG00010019553) #21	ENSUPAG00010019566 #22	ZCCHC17 (ENSUPAG00010019575) #23	SNRNP40 (ENSUPAG00010019580) #24	NKAIN1 (ENSUPAG00010019587) #25	PUM1 (ENSUPAG00010019620) #26	SDC3 (ENSUPAG00010019810) #28	LAPTM5 (ENSUPAG00010019820) #29	MATN1 (ENSUPAG00010019827) #30	PTPRU (ENSUPAG00010019842) #31	MECR (ENSUPAG00010019905) #32	SRSF4 (ENSUPAG00010019922) #33	TMEM200B (ENSUPAG00010019926)	EPB41 (ENSUPAG00010019935) #34	OPRD1 (ENSUPAG00010020681) #35	YTHDF2 (ENSUPAG00010020684) #37	GMEB1 (ENSUPAG00010020697)
Squirrel	MODERN SPECIES	74	CCDC28B (ENSSTOG00000012044) #8	TXLNA (ENSSTOG00000019412) #9	KPNA6 (ENSSTOG00000012014) #10	TMEM39B (ENSSTOG00000012007) #11	KHDRBS1 (ENSSTOG00000014138) #12	PTP4A2 (ENSSTOG00000002775) #14	ENSSTOG00000001962 #15	ADGRB2 (ENSSTOG00000005617) #16	ENSSTOG00000005523	ENSSTOG00000032249	PEF1 (ENSSTOG00000026429) #18	HCRTR1 (ENSSTOG00000005508) #19	TINAGL1 (ENSSTOG00000024715) #20	ENSSTOG00000020547	SERINC2 (ENSSTOG00000001504) #21	Fabp3 (ENSSTOG00000003842) #22	ZCCHC17 (ENSSTOG00000003825) #23	SNRNP40 (ENSSTOG00000003798) #24	NKAIN1 (ENSSTOG00000033908) #25	PUM1 (ENSSTOG00000010757) #26	SDC3 (ENSSTOG00000027125) #28	LAPTM5 (ENSSTOG00000021660) #29	MATN1 (ENSSTOG00000014709) #30	PTPRU (ENSSTOG00000015915) #31	MECR (ENSSTOG00000026575) #32	SRSF4 (ENSSTOG00000015908) #33	TMEM200B (ENSSTOG00000034064)	EPB41 (ENSSTOG00000032103) #34	OPRD1 (ENSSTOG00000011943) #35	YTHDF2 (ENSSTOG00000025075) #37	GMEB1 (ENSSTOG00000000088)
Alpin marmot	MODERN SPECIES	15	CCDC28B (ENSMMMG00000009026) #8	TXLNA (ENSMMMG00000009034) #9	KPNA6 (ENSMMMG00000009064) #10	TMEM39B (ENSMMMG00000009100) #11	KHDRBS1 (ENSMMMG00000009128) #12	PTP4A2 (ENSMMMG00000009225) #14	ENSMMMG00000009241 #15	ADGRB2 (ENSMMMG00000009281) #16	COL16A1 (ENSMMMG00000010975) #17	ENSMMMG00000011120 #18	ENSMMMG00000011137	HCRTR1 (ENSMMMG00000011144) #19	TINAGL1 (ENSMMMG00000011199) #20	ENSMMMG00000011266	SERINC2 (ENSMMMG00000011290) #21	ENSMMMG00000011348 #22	ZCCHC17 (ENSMMMG00000011356) #23	ENSMMMG00000011373	SNRNP40 (ENSMMMG00000011381) #24	NKAIN1 (ENSMMMG00000011409) #25	PUM1 (ENSMMMG00000011433) #26	SDC3 (ENSMMMG00000011746) #28	LAPTM5 (ENSMMMG00000011800) #29	PTPRU (ENSMMMG00000011811) #31	MECR (ENSMMMG00000011938) #32	SRSF4 (ENSMMMG00000011951) #33	TMEM200B (ENSMMMG00000011965)	EPB41 (ENSMMMG00000011984) #34	OPRD1 (ENSMMMG00000012823) #35	YTHDF2 (ENSMMMG00000012863) #37	GMEB1 (ENSMMMG00000012888)
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000155104.y.b #22
Alpin marmot	MODERN SPECIES	8	CFLAR (ENSMMMG00000012269)	CASP10 (ENSMMMG00000012307)	CASP8 (ENSMMMG00000012315)	FLACC1 (ENSMMMG00000012333)	TRAK2 (ENSMMMG00000012358)	STRADB (ENSMMMG00000012410)	ENSMMMG00000012437	TMEM237 (ENSMMMG00000012468)	MPP4 (ENSMMMG00000012482)	ENSMMMG00000012669	ALS2 (ENSMMMG00000012683)	CDK15 (ENSMMMG00000012752)	KIAA2012 (ENSMMMG00000012837)	SUMO1 (ENSMMMG00000012871)	NOP58 (ENSMMMG00000012922)	ENSMMMG00000012982 #22	ENSMMMG00000012991	BMPR2 (ENSMMMG00000012999)	ENSMMMG00000013017	ENSMMMG00000013051	ENSMMMG00000013060	ICA1L (ENSMMMG00000013064)	WDR12 (ENSMMMG00000013110)	CARF (ENSMMMG00000013161)	NBEAL1 (ENSMMMG00000013229)	CYP20A1 (ENSMMMG00000013312)	ABI2 (ENSMMMG00000013329)	ENSMMMG00000013568	CD28 (ENSMMMG00000013599)	CTLA4 (ENSMMMG00000013609)	ICOS (ENSMMMG00000013624)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000155104.y.b #22
Squirrel	MODERN SPECIES	98	SPCS2 (ENSSTOG00000012647)	XRRA1 (ENSSTOG00000000466)	ENSSTOG00000034261	RNF169 (ENSSTOG00000000462)	CHRDL2 (ENSSTOG00000000457)	POLD3 (ENSSTOG00000000455)	LIPT2 (ENSSTOG00000026720)	KCNE3 (ENSSTOG00000012391)	PGM2L1 (ENSSTOG00000012379)	P4HA3 (ENSSTOG00000007908)	PPME1 (ENSSTOG00000007881)	C2CD3 (ENSSTOG00000004903)	UCP3 (ENSSTOG00000004880)	UCP2 (ENSSTOG00000010715)	DNAJB13 (ENSSTOG00000010709)	ENSSTOG00000031455 #22	PAAF1 (ENSSTOG00000010701)	COA4 (ENSSTOG00000010697)	MRPL48 (ENSSTOG00000010694)	ENSSTOG00000023497	PLEKHB1 (ENSSTOG00000022422)	FAM168A (ENSSTOG00000014507)	RELT (ENSSTOG00000014491)	ARHGEF17 (ENSSTOG00000014476)	P2RY6 (ENSSTOG00000024044)	P2RY2 (ENSSTOG00000029054)	FCHSD2 (ENSSTOG00000003831)	ATG16L2 (ENSSTOG00000003790)	STARD10 (ENSSTOG00000020779)	ARAP1 (ENSSTOG00000014711)	PDE2A (ENSSTOG00000004792)
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000155104.z #22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00940000155104.z #22
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	317	CFLAR (ENSUPAG00010014940)	CASP10 (ENSUPAG00010014765)	CASP8 (ENSUPAG00010014705)	FLACC1 (ENSUPAG00010014658)	TRAK2 (ENSUPAG00010014606)	STRADB (ENSUPAG00010014591)	ENSUPAG00010014524	TMEM237 (ENSUPAG00010014479)	MPP4 (ENSUPAG00010014266)	ALS2 (ENSUPAG00010014184)	CDK15 (ENSUPAG00010014153)	FZD7 (ENSUPAG00010014150)	KIAA2012 (ENSUPAG00010014115)	SUMO1 (ENSUPAG00010014098)	NOP58 (ENSUPAG00010014015)	ENSUPAG00010014007 #22	ENSUPAG00010014004	BMPR2 (ENSUPAG00010013984)	FAM117B (ENSUPAG00010013968)	ICA1L (ENSUPAG00010013914)	WDR12 (ENSUPAG00010013907)	CARF (ENSUPAG00010013873)	NBEAL1 (ENSUPAG00010013702)
Arctic ground squirrel	MODERN SPECIES	680					ENSUPAG00010023095	LIPT2 (ENSUPAG00010023099)	KCNE3 (ENSUPAG00010023101)	PGM2L1 (ENSUPAG00010023103)	ENSUPAG00010023111	P4HA3 (ENSUPAG00010023112)	PPME1 (ENSUPAG00010023113)	C2CD3 (ENSUPAG00010023114)	UCP3 (ENSUPAG00010023118)	UCP2 (ENSUPAG00010023121)	DNAJB13 (ENSUPAG00010023122)	ENSUPAG00010023124 #22	PAAF1 (ENSUPAG00010023126)	COA4 (ENSUPAG00010023131)	ENSUPAG00010023132
Lagomorpha	ANCESTRAL SPECIES	21															ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Pika	MODERN SPECIES	10054																FABP3 (ENSOPRG00000002661) #22
Rabbit	MODERN SPECIES	4	NBL1 (ENSOCUG00000008065)	MICOS10 (ENSOCUG00000030087)	CAPZB (ENSOCUG00000014711)	SLC66A1 (ENSOCUG00000027668)	AKR7L (ENSOCUG00000000153)	ENSOCUG00000029709	ENSOCUG00000014622	MRTO4 (ENSOCUG00000000274)	EMC1 (ENSOCUG00000000272)	UBR4 (ENSOCUG00000000264)	IFFO2 (ENSOCUG00000021074)	ALDH4A1 (ENSOCUG00000015315)	TAS1R2 (ENSOCUG00000010652)	PAX7 (ENSOCUG00000006146)	IGSF21 (ENSOCUG00000022332)	FABP3 (ENSOCUG00000014608) #22	ENSOCUG00000014599 #23	SNRNP40 (ENSOCUG00000014588) #24	ENSOCUG00000004783 #25	PUM1 (ENSOCUG00000008641) #26	SDC3 (ENSOCUG00000006838) #28	MATN1 (ENSOCUG00000008153) #30	PTPRU (ENSOCUG00000012661) #31	MECR (ENSOCUG00000012645) #32	SRSF4 (ENSOCUG00000001837) #33	TMEM200B (ENSOCUG00000025757)	EPB41 (ENSOCUG00000006641) #34	ENSOCUG00000030120	OPRD1 (ENSOCUG00000001033) #35	YTHDF2 (ENSOCUG00000010612) #37	GMEB1 (ENSOCUG00000010893)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01100000263839
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Carnivora	ANCESTRAL SPECIES	1	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Caniformia	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Ferret	MODERN SPECIES	167	IQCC (ENSMPUG00000015298) #7	CCDC28B (ENSMPUG00000015300) #8	TXLNA (ENSMPUG00000015304) #9	KPNA6 (ENSMPUG00000015306) #10	TMEM39B (ENSMPUG00000015352) #11	KHDRBS1 (ENSMPUG00000015353) #12	ENSMPUG00000015354	PTP4A2 (ENSMPUG00000015355) #14	SPOCD1 (ENSMPUG00000015359) #15	ADGRB2 (ENSMPUG00000015362) #16	COL16A1 (ENSMPUG00000015420) #17	PEF1 (ENSMPUG00000015427) #18	HCRTR1 (ENSMPUG00000015430) #19	TINAGL1 (ENSMPUG00000015431) #20	SERINC2 (ENSMPUG00000015434) #21	FABP3 (ENSMPUG00000015436) #22	ZCCHC17 (ENSMPUG00000015442) #23	SNRNP40 (ENSMPUG00000015451) #24	NKAIN1 (ENSMPUG00000015453) #25	PUM1 (ENSMPUG00000015454) #26	SDC3 (ENSMPUG00000015458) #28	LAPTM5 (ENSMPUG00000015459) #29	MATN1 (ENSMPUG00000015461) #30	ENSMPUG00000015464	PTPRU (ENSMPUG00000015467) #31	MECR (ENSMPUG00000015468) #32	SRSF4 (ENSMPUG00000015470) #33	EPB41 (ENSMPUG00000015472) #34	OPRD1 (ENSMPUG00000015498) #35	ENSMPUG00000015500	YTHDF2 (ENSMPUG00000015501) #37
American mink	MODERN SPECIES	9	IQCC (ENSNVIG00000024263) #7	CCDC28B (ENSNVIG00000024262) #8	TXLNA (ENSNVIG00000024259) #9	KPNA6 (ENSNVIG00000024252) #10	TMEM39B (ENSNVIG00000024249) #11	ENSNVIG00000024246 #11	KHDRBS1 (ENSNVIG00000024241) #12	PTP4A2 (ENSNVIG00000024240) #14	ENSNVIG00000024238 #15	ADGRB2 (ENSNVIG00000024172) #16	COL16A1 (ENSNVIG00000024163) #17	PEF1 (ENSNVIG00000024162) #18	HCRTR1 (ENSNVIG00000024161) #19	TINAGL1 (ENSNVIG00000024159) #20	SERINC2 (ENSNVIG00000024153) #21	FABPH (ENSNVIG00000024151) #22	ZCCHC17 (ENSNVIG00000024150) #23	SNR40 (ENSNVIG00000024147) #24	NKAIN1 (ENSNVIG00000024142) #25	PUM1 (ENSNVIG00000024082) #26	SDC3 (ENSNVIG00000024078) #28	LAPM5 (ENSNVIG00000024073) #29	MATN1 (ENSNVIG00000024071) #30	ENSNVIG00000024069	PTPRU (ENSNVIG00000024060) #31	MECR (ENSNVIG00000024055) #32	SRSF4 (ENSNVIG00000024050) #33	TMEM200B (ENSNVIG00000024049)	EPB41 (ENSNVIG00000023862) #34	OPRD1 (ENSNVIG00000023851) #35	YTHDF2 (ENSNVIG00000023849) #37
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000155104.k #22
Giant Panda	MODERN SPECIES	1343																ENSAMEG00000026188 #22
Ursidae	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718.l #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.l #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00390000000885.b	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Ursus	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718.l #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.l #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079.o #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00390000000885.b	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000156761 #37
Polar bear	MODERN SPECIES	189	ENSUMAG00000008447 #7	CCDC28B (ENSUMAG00000008448) #8	TXLNA (ENSUMAG00000008458) #9	KPNA6 (ENSUMAG00000008518) #10	TMEM39B (ENSUMAG00000008531) #11	KHDRBS1 (ENSUMAG00000008568) #12	PTP4A2 (ENSUMAG00000008574) #14	ENSUMAG00000008598 #15	ADGRB2 (ENSUMAG00000008682) #16	COL16A1 (ENSUMAG00000009136) #17	PEF1 (ENSUMAG00000009169) #18	HCRTR1 (ENSUMAG00000009171) #19	TINAGL1 (ENSUMAG00000009176) #20	ENSUMAG00000009179	SERINC2 (ENSUMAG00000009183) #21	FABP3 (ENSUMAG00000009186) #22	ENSUMAG00000009188 #23	SNRNP40 (ENSUMAG00000009191) #24	NKAIN1 (ENSUMAG00000009198) #25	PUM1 (ENSUMAG00000009211) #26	LAPTM5 (ENSUMAG00000009235) #29	MATN1 (ENSUMAG00000009240) #30	PTPRU (ENSUMAG00000009390) #31	MECR (ENSUMAG00000010949) #32	ENSUMAG00000010957	ENSUMAG00000010964	EPB41 (ENSUMAG00000010982) #34	YTHDF2 (ENSUMAG00000011040) #37	GMEB1 (ENSUMAG00000011042)	TAF12 (ENSUMAG00000011046)	RAB42 (ENSUMAG00000011052)
American black bear	MODERN SPECIES	213																FABP3 (ENSUAMG00000018257) #22	ENSUAMG00000018258 #23	SNRNP40 (ENSUAMG00000018260) #24	NKAIN1 (ENSUAMG00000018261) #25	ENSUAMG00000018262 #26	ENSUAMG00000018266 #26	SDC3 (ENSUAMG00000018267) #28	LAPTM5 (ENSUAMG00000018268) #29	MATN1 (ENSUAMG00000018269) #30
Giant Panda	MODERN SPECIES	11	DCDC2B (ENSAMEG00000007821)	IQCC (ENSAMEG00000007823) #7	TXLNA (ENSAMEG00000007842) #9	KPNA6 (ENSAMEG00000007879) #10	TMEM39B (ENSAMEG00000007943) #11	KHDRBS1 (ENSAMEG00000007969) #12	PTP4A2 (ENSAMEG00000025118) #14	SPOCD1 (ENSAMEG00000017802) #15	ADGRB2 (ENSAMEG00000017786) #16	COL16A1 (ENSAMEG00000027160) #17	PEF1 (ENSAMEG00000017781) #18	HCRTR1 (ENSAMEG00000017770) #19	TINAGL1 (ENSAMEG00000017754) #20	ENSAMEG00000017744	SERINC2 (ENSAMEG00000017719) #21	ENSAMEG00000017717 #22	ZCCHC17 (ENSAMEG00000017710) #23	SNRNP40 (ENSAMEG00000017689) #24	NKAIN1 (ENSAMEG00000017682) #25	PUM1 (ENSAMEG00000017656) #26	SDC3 (ENSAMEG00000024696) #28	LAPTM5 (ENSAMEG00000017647) #29	PTPRU (ENSAMEG00000000455) #31	MECR (ENSAMEG00000000564) #32	SRSF4 (ENSAMEG00000025913) #33	ENSAMEG00000020210	TMEM200B (ENSAMEG00000030570)	EPB41 (ENSAMEG00000011446) #34	OPRD1 (ENSAMEG00000011437) #35	YTHDF2 (ENSAMEG00000011429) #37	GMEB1 (ENSAMEG00000011405)
Canidae	ANCESTRAL SPECIES	14	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00390000013067.a.a	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Red fox	MODERN SPECIES	103	ENSVVUG00000015100	DCDC2B (ENSVVUG00000015092)	IQCC (ENSVVUG00000015085) #7	CCDC28B (ENSVVUG00000015064) #8	TXLNA (ENSVVUG00000015057) #9	KPNA6 (ENSVVUG00000015050) #10	TMEM39B (ENSVVUG00000015039) #11	KHDRBS1 (ENSVVUG00000015032) #12	PTP4A2 (ENSVVUG00000015025) #14	ENSVVUG00000015008 #15	ADGRB2 (ENSVVUG00000014710) #16	PEF1 (ENSVVUG00000014698) #18	HCRTR1 (ENSVVUG00000014694) #19	TINAGL1 (ENSVVUG00000014683) #20	SERINC2 (ENSVVUG00000014676) #21	FABP3 (ENSVVUG00000014673) #22	ENSVVUG00000014670 #23	ENSVVUG00000014666	SNRNP40 (ENSVVUG00000014661) #24	NKAIN1 (ENSVVUG00000014660) #25	PUM1 (ENSVVUG00000014631) #26	SDC3 (ENSVVUG00000014622) #28	LAPTM5 (ENSVVUG00000014616) #29	MATN1 (ENSVVUG00000014610) #30	ENSVVUG00000014580	PTPRU (ENSVVUG00000012797) #31	MECR (ENSVVUG00000012707) #32	ENSVVUG00000012696	SRSF4 (ENSVVUG00000012690) #33	TMEM200B (ENSVVUG00000012687)	EPB41 (ENSVVUG00000012664) #34
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363.w #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00390000013067.a.a	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Dog	MODERN SPECIES	11	DCDC2B (ENSCAFG00845005026)	ENSCAFG00845005039 #7	CCDC28B (ENSCAFG00845005050) #8	TXLNA (ENSCAFG00845005054) #9	KPNA6 (ENSCAFG00845005057) #10	TMEM39B (ENSCAFG00845005063) #11	KHDRBS1 (ENSCAFG00845005081) #12	PTP4A2 (ENSCAFG00845005093) #14	ENSCAFG00845005129 #15	ADGRB2 (ENSCAFG00845005333) #16	COL16A1 (ENSCAFG00845005746) #17	PEF1 (ENSCAFG00845005805) #18	HCRTR1 (ENSCAFG00845005853) #19	TINAGL1 (ENSCAFG00845005917) #20	SERINC2 (ENSCAFG00845005979) #21	FABP3 (ENSCAFG00845006076) #22	ZCCHC17 (ENSCAFG00845006145) #23	SNRNP40 (ENSCAFG00845006219) #24	NKAIN1 (ENSCAFG00845006311) #25	PUM1 (ENSCAFG00845006517) #26	SDC3 (ENSCAFG00845007282) #28	LAPTM5 (ENSCAFG00845007384) #29	MATN1 (ENSCAFG00845007456) #30	PTPRU (ENSCAFG00845007699) #31	MECR (ENSCAFG00845008187) #32	ENSCAFG00845008272	SRSF4 (ENSCAFG00845008307) #33	TMEM200B (ENSCAFG00845008383)	EPB41 (ENSCAFG00845008658) #34	OPRD1 (ENSCAFG00845009543) #35	YTHDF2 (ENSCAFG00845009574) #37
Dingo	MODERN SPECIES	41	TMEM234 (ENSCAFG00020025349)	DCDC2B (ENSCAFG00020025344)	IQCC (ENSCAFG00020025342) #7	CCDC28B (ENSCAFG00020025340) #8	TXLNA (ENSCAFG00020025332) #9	KPNA6 (ENSCAFG00020025180) #10	TMEM39B (ENSCAFG00020025156) #11	KHDRBS1 (ENSCAFG00020025153) #12	PTP4A2 (ENSCAFG00020025152) #14	ADGRB2 (ENSCAFG00020024936) #16	COL16A1 (ENSCAFG00020024875) #17	PEF1 (ENSCAFG00020024871) #18	HCRTR1 (ENSCAFG00020024868) #19	TINAGL1 (ENSCAFG00020024850) #20	SERINC2 (ENSCAFG00020024846) #21	FABP3 (ENSCAFG00020024841) #22	ENSCAFG00020024828 #23	SNRNP40 (ENSCAFG00020024822) #24	NKAIN1 (ENSCAFG00020024820) #25	PUM1 (ENSCAFG00020024616) #26	SDC3 (ENSCAFG00020024595) #28	LAPTM5 (ENSCAFG00020024579) #29	MATN1 (ENSCAFG00020024574) #30	ENSCAFG00020024568	PTPRU (ENSCAFG00020024014) #31	MECR (ENSCAFG00020023972) #32	ENSCAFG00020023966	SRSF4 (ENSCAFG00020023963) #33	TMEM200B (ENSCAFG00020023960)	EPB41 (ENSCAFG00020023692) #34	OPRD1 (ENSCAFG00020023627) #35
Felidae	ANCESTRAL SPECIES	18	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Cat	MODERN SPECIES	239	IQCC (ENSFCAG00000012479) #7	CCDC28B (ENSFCAG00000012478) #8	TXLNA (ENSFCAG00000027741) #9	KPNA6 (ENSFCAG00000000456) #10	TMEM39B (ENSFCAG00000003036) #11	KHDRBS1 (ENSFCAG00000006511) #12	PTP4A2 (ENSFCAG00000044159) #14	SPOCD1 (ENSFCAG00000052810) #15	ADGRB2 (ENSFCAG00000015677) #16	COL16A1 (ENSFCAG00000015669) #17	PEF1 (ENSFCAG00000022785) #18	HCRTR1 (ENSFCAG00000015666) #19	TINAGL1 (ENSFCAG00000015664) #20	ENSFCAG00000025357	SERINC2 (ENSFCAG00000004198) #21	FABP3 (ENSFCAG00000028555) #22	ZCCHC17 (ENSFCAG00000004196) #23	SNRNP40 (ENSFCAG00000004195) #24	NKAIN1 (ENSFCAG00000045405) #25	PUM1 (ENSFCAG00000010374) #26	SDC3 (ENSFCAG00000010378) #28	LAPTM5 (ENSFCAG00000022721) #29	MATN1 (ENSFCAG00000028893) #30	PTPRU (ENSFCAG00000002203) #31	MECR (ENSFCAG00000002202) #32	SRSF4 (ENSFCAG00000027821) #33	TMEM200B (ENSFCAG00000026969)	EPB41 (ENSFCAG00000007752) #34	YTHDF2 (ENSFCAG00000012446) #37	GMEB1 (ENSFCAG00000018209)	TAF12 (ENSFCAG00000029658)
Panthera	ANCESTRAL SPECIES	4	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01030000238400
Tiger	MODERN SPECIES	383	DCDC2B (ENSPTIG00000016307)	IQCC (ENSPTIG00000015691) #7	CCDC28B (ENSPTIG00000013947) #8	TXLNA (ENSPTIG00000011523) #9	KPNA6 (ENSPTIG00000011029) #10	TMEM39B (ENSPTIG00000010261) #11	KHDRBS1 (ENSPTIG00000007835) #12	PTP4A2 (ENSPTIG00000001830) #14	ADGRB2 (ENSPTIG00000019491) #16	COL16A1 (ENSPTIG00000008255) #17	PEF1 (ENSPTIG00000000902) #18	HCRTR1 (ENSPTIG00000020803) #19	TINAGL1 (ENSPTIG00000019282) #20	ENSPTIG00000017797	SERINC2 (ENSPTIG00000013724) #21	FABP3 (ENSPTIG00000013482) #22	ZCCHC17 (ENSPTIG00000010650) #23	SNRNP40 (ENSPTIG00000009045) #24	NKAIN1 (ENSPTIG00000008164) #25	PUM1 (ENSPTIG00000010798) #26	SDC3 (ENSPTIG00000009773) #28	LAPTM5 (ENSPTIG00000008231) #29	MATN1 (ENSPTIG00000004971) #30
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT01030000238400
leopard	MODERN SPECIES	127	IQCC (ENSPPRG00000010633) #7	CCDC28B (ENSPPRG00000010624) #8	TXLNA (ENSPPRG00000010535) #9	KPNA6 (ENSPPRG00000010224) #10	TMEM39B (ENSPPRG00000009830) #11	KHDRBS1 (ENSPPRG00000009461) #12	PTP4A2 (ENSPPRG00000008367) #14	ENSPPRG00000008092 #15	ADGRB2 (ENSPPRG00000007298) #16	COL16A1 (ENSPPRG00000005381) #17	PEF1 (ENSPPRG00000004793) #18	HCRTR1 (ENSPPRG00000004639) #19	TINAGL1 (ENSPPRG00000004222) #20	ENSPPRG00000004049	SERINC2 (ENSPPRG00000003681) #21	FABP3 (ENSPPRG00000003186) #22	ENSPPRG00000003044 #23	SNRNP40 (ENSPPRG00000001741) #24	NKAIN1 (ENSPPRG00000001569) #25	PUM1 (ENSPPRG00000001370) #26	SDC3 (ENSPPRG00000023387) #28	LAPTM5 (ENSPPRG00000024111) #29	MATN1 (ENSPPRG00000024148) #30
lion	MODERN SPECIES	8	IQCC (ENSPLOG00000006445) #7	CCDC28B (ENSPLOG00000006486) #8	TXLNA (ENSPLOG00000006509) #9	KPNA6 (ENSPLOG00000006524) #10	TMEM39B (ENSPLOG00000006558) #11	KHDRBS1 (ENSPLOG00000006616) #12	PTP4A2 (ENSPLOG00000006684) #14	ENSPLOG00000006734 #15	ADGRB2 (ENSPLOG00000007005) #16	COL16A1 (ENSPLOG00000007816) #17	PEF1 (ENSPLOG00000008094) #18	HCRTR1 (ENSPLOG00000008121) #19	TINAGL1 (ENSPLOG00000008299) #20	ENSPLOG00000008479	SERINC2 (ENSPLOG00000008596) #21	FABP3 (ENSPLOG00000008749) #22	ZCCHC17 (ENSPLOG00000008804) #23	SNRNP40 (ENSPLOG00000008874) #24	NKAIN1 (ENSPLOG00000008936) #25	ENSPLOG00000008981	PUM1 (ENSPLOG00000009086) #26	SDC3 (ENSPLOG00000009532) #28	LAPTM5 (ENSPLOG00000009567) #29	MATN1 (ENSPLOG00000009594) #30	PTPRU (ENSPLOG00000009674) #31	MECR (ENSPLOG00000010095) #32	SRSF4 (ENSPLOG00000010130) #33	TMEM200B (ENSPLOG00000010145)	EPB41 (ENSPLOG00000010573) #34	OPRD1 (ENSPLOG00000012612) #35	YTHDF2 (ENSPLOG00000012653) #37
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Chiroptera	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Megabat	MODERN SPECIES	3493															SERINC2 (ENSPVAG00000014749) #21	FABP3 (ENSPVAG00000014748) #22	ZCCHC17 (ENSPVAG00000014747) #23	SNRNP40 (ENSPVAG00000014746) #24	NKAIN1 (ENSPVAG00000014745) #25
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Greater horseshoe bat	MODERN SPECIES	27	TMEM234 (ENSRFEG00010013438)	ENSRFEG00010013228 #7	TXLNA (ENSRFEG00010013068) #9	KPNA6 (ENSRFEG00010013020) #10	TMEM39B (ENSRFEG00010012978) #11	KHDRBS1 (ENSRFEG00010012885) #12	PRL-2 (ENSRFEG00010012695) #14	SPOCD1 (ENSRFEG00010012355) #15	ADGRB2 (ENSRFEG00010010464) #16	COL16A1 (ENSRFEG00010010120) #17	PEF1 (ENSRFEG00010010072) #18	HCRTR1 (ENSRFEG00010009916) #19	TINAGL1 (ENSRFEG00010009829) #20	ENSRFEG00010009671	SERINC2 (ENSRFEG00010009481) #21	FABP3 (ENSRFEG00010009426) #22	ZCCHC17 (ENSRFEG00010009305) #23	SNRNP40 (ENSRFEG00010009229) #24	NKAIN1 (ENSRFEG00010009190) #25	PUM1 (ENSRFEG00010008671) #26	SDC3 (ENSRFEG00010008579) #28	LAPTM5 (ENSRFEG00010008534) #29	MATN1 (ENSRFEG00010008435) #30	PTPRU (ENSRFEG00010008351) #31	MECR (ENSRFEG00010008283) #32	SRSF4 (ENSRFEG00010008251) #33	TMEM200B (ENSRFEG00010008234)	ENSRFEG00010008226	EPB41 (ENSRFEG00010007813) #34	OPRD1 (ENSRFEG00010007729) #35	ENSRFEG00010007704
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1247	MISP3 (ENSMLUG00000017771)	C19orf67 (ENSMLUG00000024756)	PRKACA (ENSMLUG00000008255)	ASF1B (ENSMLUG00000000537)	ADGRL1 (ENSMLUG00000000503)	ADGRE5 (ENSMLUG00000009235)	ENSMLUG00000009280	PKN1 (ENSMLUG00000008347)	PTGER1 (ENSMLUG00000008382)	GIPC1 (ENSMLUG00000008387)	DNAJB1 (ENSMLUG00000012065)	TECR (ENSMLUG00000008415)	ENSMLUG00000008446	CLEC17A (ENSMLUG00000008456)	ADGRE3 (ENSMLUG00000010862)	ENSMLUG00000022362 #22	ENSMLUG00000010883	ENSMLUG00000025927	ENSMLUG00000028398	ENSMLUG00000028004	ENSMLUG00000022908	ENSMLUG00000024262	ENSMLUG00000024081
Microbat	MODERN SPECIES	1374														ENSMLUG00000027317	SERINC2 (ENSMLUG00000000597) #21	FABP3 (ENSMLUG00000013609) #22	ZCCHC17 (ENSMLUG00000000594) #23	ENSMLUG00000000586 #24	NKAIN1 (ENSMLUG00000006038) #25	PUM1 (ENSMLUG00000006490) #26	SDC3 (ENSMLUG00000006485) #28	LAPTM5 (ENSMLUG00000001194) #29	MATN1 (ENSMLUG00000001190) #30
Equus	ANCESTRAL SPECIES	2	ENSGT00390000017195 #7	ENSGT00500000044870.b.a.b ##8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT01090000263471	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Donkey	MODERN SPECIES	25	ENSEASG00005023676	ENSEASG00005028960 ##8	TXLNA (ENSEASG00005010943) #9	KPNA6 (ENSEASG00005010939) #10	TMEM39B (ENSEASG00005010933) #11	KHDRBS1 (ENSEASG00005010927) #12	ENSEASG00005037968	PTP4A2 (ENSEASG00005028274) #14	SPOCD1 (ENSEASG00005010908) #15	ADGRB2 (ENSEASG00005010827) #16	COL16A1 (ENSEASG00005010825) #17	PEF1 (ENSEASG00005010824) #18	HCRTR1 (ENSEASG00005010823) #19	TINAGL1 (ENSEASG00005010822) #20	SERINC2 (ENSEASG00005010821) #21	FABP3 (ENSEASG00005033124) #22	ZCCHC17 (ENSEASG00005010819) #23	SNRNP40 (ENSEASG00005010818) #24	NKAIN1 (ENSEASG00005010817) #25	PUM1 (ENSEASG00005010813) #26	SDC3 (ENSEASG00005010812) #28	LAPTM5 (ENSEASG00005010811) #29	MATN1 (ENSEASG00005010809) #30	PTPRU (ENSEASG00005010255) #31	MECR (ENSEASG00005010173) #32	ENSEASG00005024193	SRSF4 (ENSEASG00005010168) #33	TMEM200B (ENSEASG00005030825)	EPB41 (ENSEASG00005010160) #34	OPRD1 (ENSEASG00005010156) #35	YTHDF2 (ENSEASG00005010152) #37
Horse	DUPLICATION
Horse	MODERN SPECIES	11	TMEM234 (ENSECAG00000014363)	IQCC (ENSECAG00000015656) #7	TXLNA (ENSECAG00000019321) #9	KPNA6 (ENSECAG00000004549) #10	TMEM39B (ENSECAG00000013603) #11	KHDRBS1 (ENSECAG00000019346) #12	PTP4A2 (ENSECAG00000005653) #14	SPOCD1 (ENSECAG00000009300) #15	ADGRB2 (ENSECAG00000009739) #16	COL16A1 (ENSECAG00000024119) #17	PEF1 (ENSECAG00000021283) #18	HCRTR1 (ENSECAG00000008995) #19	TINAGL1 (ENSECAG00000014247) #20	SERINC2 (ENSECAG00000020956) #21	ZCCHC17 (ENSECAG00000025040) #23	FABP3 (ENSECAG00000024852) #22	SNRNP40 (ENSECAG00000006955) #24	NKAIN1 (ENSECAG00000016649) #25	PUM1 (ENSECAG00000021369) #26	LAPTM5 (ENSECAG00000000686) #29	MATN1 (ENSECAG00000008747) #30	PTPRU (ENSECAG00000012344) #31	MECR (ENSECAG00000015370) #32	ENSECAG00000045698	SRSF4 (ENSECAG00000021350) #33	EPB41 (ENSECAG00000022255) #34	TMEM200B (ENSECAG00000040505)	OPRD1 (ENSECAG00000022616) #35	YTHDF2 (ENSECAG00000023108) #37	GMEB1 (ENSECAG00000009764)	TAF12 (ENSECAG00000012688)
Horse	MODERN SPECIES	11	ENSECAG00000014997	ENSECAG00000030364	TRIM61 (ENSECAG00000014985)	ENSECAG00000038371	ENSECAG00000042205	ENSECAG00000034596	ENSECAG00000014971	ENSECAG00000042254	TRIM75 (ENSECAG00000036019)	TMEM192 (ENSECAG00000014003)	KLHL2 (ENSECAG00000010727)	MSMO1 (ENSECAG00000010554)	CPE (ENSECAG00000009256)	TLL1 (ENSECAG00000002251)	SPOCK3 (ENSECAG00000024906)	ENSECAG00000032479 #22	ANXA10 (ENSECAG00000024897)	ENSECAG00000048862	ENSECAG00000032492	DDX60 (ENSECAG00000053648)	DDX60L (ENSECAG00000024062)	ENSECAG00000036595	PALLD (ENSECAG00000023122)	CBR4 (ENSECAG00000022089)	ENSECAG00000034250	SH3RF1 (ENSECAG00000021240)	NEK1 (ENSECAG00000017058)	CLCN3 (ENSECAG00000014556)	HPF1 (ENSECAG00000013735)	MFAP3L (ENSECAG00000002425)	AADAT (ENSECAG00000013400)
Artiodactyla	DUPLICATION
Artiodactyla	DUPLICATION
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Suina	ANCESTRAL SPECIES	10	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Pig	DUPLICATION
Pig	MODERN SPECIES	14	IQCC (ENSSSCG00000003610) #7	CCDC28B (ENSSSCG00000031514) #8	TXLNA (ENSSSCG00000003617) #9	KPNA6 (ENSSSCG00000034017) #10	TMEM39B (ENSSSCG00000032563) #11	KHDRBS1 (ENSSSCG00000023122) #12	PTP4A2 (ENSSSCG00000039885) #14	SPOCD1 (ENSSSCG00000003606) #15	ADGRB2 (ENSSSCG00000003604) #16	COL16A1 (ENSSSCG00000003603) #17	PEF1 (ENSSSCG00000034810) #18	HCRTR1 (ENSSSCG00000003601) #19	TINAGL1 (ENSSSCG00000003600) #20	ENSSSCG00000003599	SERINC2 (ENSSSCG00000023585) #21	FABP3 (ENSSSCG00000036883) #22	ZCCHC17 (ENSSSCG00000031639) #23	SNRNP40 (ENSSSCG00000003596) #24	NKAIN1 (ENSSSCG00000032193) #25	PUM1 (ENSSSCG00000003591) #26	SDC3 (ENSSSCG00000003592) #28	LAPTM5 (ENSSSCG00000025034) #29	MATN1 (ENSSSCG00000022554) #30	ENSSSCG00000049560	PTPRU (ENSSSCG00000003590) #31	MECR (ENSSSCG00000003589) #32	SRSF4 (ENSSSCG00000051929) #33	TMEM200B (ENSSSCG00000058017)	ENSSSCG00000059283	EPB41 (ENSSSCG00000003586) #34	OPRD1 (ENSSSCG00000047080) #35
Pig	MODERN SPECIES	13	DDX23 (ENSSSCG00000000176)	CACNB3 (ENSSSCG00000032967)	ADCY6 (ENSSSCG00000000175)	TEX49 (ENSSSCG00000000174)	CCNT1 (ENSSSCG00000038181)	C12orf75 (ENSSSCG00000031661)	NUAK1 (ENSSSCG00000032861)	CKAP4 (ENSSSCG00000000171)	TCP11L2 (ENSSSCG00000024881)	POLR3B (ENSSSCG00000057209)	RFX4 (ENSSSCG00000052141)	RIC8B (ENSSSCG00000000167)	TMEM263 (ENSSSCG00000038968)	MTERF2 (ENSSSCG00000039109)	CRY1 (ENSSSCG00000000164)	ENSSSCG00000036971 #22	ABTB3 (ENSSSCG00000000162)	PWP1 (ENSSSCG00000000161)	PRDM4 (ENSSSCG00000000160)	ASCL4 (ENSSSCG00000000159)	RTCB (ENSSSCG00000000158)	BPIFC (ENSSSCG00000000157)	FBXO7 (ENSSSCG00000000156)	SYN3 (ENSSSCG00000040453)	TIMP3 (ENSSSCG00000031866)	ENSSSCG00000000151	ENSSSCG00000046062	RBFOX2 (ENSSSCG00000000152)	ENSSSCG00000039706	ENSSSCG00000000148	MYH9 (ENSSSCG00000000145)
Chacoan peccary	MODERN SPECIES	192														VPS13C (ENSCWAG00000000579)	ENSCWAG00000000676	ENSCWAG00000000689 #22	ENSCWAG00000000701	ENSCWAG00000000707	ENSCWAG00000000712	TLN2 (ENSCWAG00000000763)	ENSCWAG00000000960	TPM1 (ENSCWAG00000001033)	LACTB (ENSCWAG00000001493)	RPS27L (ENSCWAG00000001510)	RAB8B (ENSCWAG00000001533)	APH1B (ENSCWAG00000001558)	CA12 (ENSCWAG00000001590)	USP3 (ENSCWAG00000001654)	FBXL22 (ENSCWAG00000001746)	HERC1 (ENSCWAG00000001772)	DAPK2 (ENSCWAG00000001815)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Pecora	ANCESTRAL SPECIES	16	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Yarkand deer	MODERN SPECIES	31	IQCC (ENSCHYG00000013128) #7	TXLNA (ENSCHYG00000013058) #9	KPNA6 (ENSCHYG00000013007) #10	TMEM39B (ENSCHYG00000012917) #11	KHDRBS1 (ENSCHYG00000012801) #12	ENSCHYG00000012576 #14	SPOCD1 (ENSCHYG00000012395) #15	ADGRB2 (ENSCHYG00000010702) #16	COL16A1 (ENSCHYG00000009055) #17	PEF1 (ENSCHYG00000008877) #18	HCRTR1 (ENSCHYG00000008769) #19	ENSCHYG00000008740	TINAGL1 (ENSCHYG00000008643) #20	ENSCHYG00000008439	SERINC2 (ENSCHYG00000008301) #21	ENSCHYG00000008252 #22	ENSCHYG00000008153	ZCCHC17 (ENSCHYG00000007996) #23	SNRNP40 (ENSCHYG00000007905) #24	NKAIN1 (ENSCHYG00000007858) #25	ENSCHYG00000007839	PUM1 (ENSCHYG00000007161) #26	SDC3 (ENSCHYG00000007038) #28	LAPTM5 (ENSCHYG00000006997) #29	MATN1 (ENSCHYG00000006958) #30	PTPRU (ENSCHYG00000006797) #31	MECR (ENSCHYG00000006636) #32	SRSF4 (ENSCHYG00000006560) #33	TMEM200B (ENSCHYG00000006532)	EPB41 (ENSCHYG00000006045) #34	OPRD1 (ENSCHYG00000005893) #35
Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Bovidae	ANCESTRAL SPECIES	8	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Caprinae	ANCESTRAL SPECIES	5	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Rambouillet Sheep	MODERN SPECIES	11	IQCC (ENSOARG00020021634) #7	CCDC28B (ENSOARG00020021703) #8	TXLNA (ENSOARG00020021753) #9	KPNA6 (ENSOARG00020021837) #10	TMEM39B (ENSOARG00020006564) #11	KHDRBS1 (ENSOARG00020006608) #12	PTP4A2 (ENSOARG00020006704) #14	SPOCD1 (ENSOARG00020006930) #15	ADGRB2 (ENSOARG00020007152) #16	COL16A1 (ENSOARG00020008158) #17	PEF1 (ENSOARG00020010058) #18	HCRTR1 (ENSOARG00020010140) #19	TINAGL1 (ENSOARG00020010269) #20	ENSOARG00020010572	SERINC2 (ENSOARG00020010687) #21	FABP3 (ENSOARG00020010991) #22	ZCCHC17 (ENSOARG00020011140) #23	SNRNP40 (ENSOARG00020011614) #24	PUM1 (ENSOARG00020011853) #26	SDC3 (ENSOARG00020013780) #28	LAPTM5 (ENSOARG00020013915) #29	MATN1 (ENSOARG00020013966) #30	PTPRU (ENSOARG00020014061) #31	MECR (ENSOARG00020015587) #32	SRSF4 (ENSOARG00020015684) #33	TMEM200B (ENSOARG00020015783)	EPB41 (ENSOARG00020015888) #34	OPRD1 (ENSOARG00020017834) #35	YTHDF2 (ENSOARG00020017875) #37	GMEB1 (ENSOARG00020017971)	ENSOARG00020018054
Goat	MODERN SPECIES	11	IQCC (ENSCHIG00000020479) #7	CCDC28B (ENSCHIG00000011414) #8	TXLNA (ENSCHIG00000026604) #9	KPNA6 (ENSCHIG00000016075) #10	TMEM39B (ENSCHIG00000018445) #11	KHDRBS1 (ENSCHIG00000013092) #12	PTP4A2 (ENSCHIG00000025158) #14	SPOCD1 (ENSCHIG00000022249) #15	ADGRB2 (ENSCHIG00000024973) #16	COL16A1 (ENSCHIG00000023822) #17	PEF1 (ENSCHIG00000018305) #18	HCRTR1 (ENSCHIG00000011364) #19	TINAGL1 (ENSCHIG00000021015) #20	ENSCHIG00000006579	SERINC2 (ENSCHIG00000008007) #21	FABP3 (ENSCHIG00000014068) #22	ZCCHC17 (ENSCHIG00000015629) #23	SNRNP40 (ENSCHIG00000009344) #24	NKAIN1 (ENSCHIG00000026515) #25	PUM1 (ENSCHIG00000012952) #26	ENSCHIG00000015655 #28	LAPTM5 (ENSCHIG00000013968) #29	MATN1 (ENSCHIG00000008350) #30	PTPRU (ENSCHIG00000018867) #31	MECR (ENSCHIG00000007022) #32	SRSF4 (ENSCHIG00000022096) #33	TMEM200B (ENSCHIG00000005464)	EPB41 (ENSCHIG00000014338) #34	OPRD1 (ENSCHIG00000016495) #35	YTHDF2 (ENSCHIG00000022985) #37	GMEB1 (ENSCHIG00000000629)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT00390000008767.b.d.b.a	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.a #22	ENSGT00510000047363.c #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Bos	ANCESTRAL SPECIES	6	ENSGT00940000158303 #9	ENSGT00390000008767.b.d.b.a	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00960000191283	ENSGT00940000155104.q.a #22	ENSGT00510000047363.c #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.b.a	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000158303 #9	ENSGT00390000008767.b.d.b.a	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00960000191283	ENSGT00940000155104.q.a #22	ENSGT00510000047363.c #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.b.a	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Domestic yak	MODERN SPECIES	11	ENSBGRG00000011364	KPNA6 (ENSBGRG00000011110) #10	TMEM39B (ENSBGRG00000011031) #11	KHDRBS1 (ENSBGRG00000010825) #12	ENSBGRG00000010792	PTP4A2 (ENSBGRG00000010487) #14	SPOCD1 (ENSBGRG00000010336) #15	ADGRB2 (ENSBGRG00000009144) #16	COL16A1 (ENSBGRG00000008612) #17	PEF1 (ENSBGRG00000008534) #18	HCRTR1 (ENSBGRG00000008440) #19	TINAGL1 (ENSBGRG00000008317) #20	ENSBGRG00000008192	SERINC2 (ENSBGRG00000007968) #21	ENSBGRG00000007937	H-FABP (ENSBGRG00000007849) #22	ENSBGRG00000007511 #23	SNRNP40 (ENSBGRG00000007293) #24	ENSBGRG00000007229 #25	ENSBGRG00000007212	PUM1 (ENSBGRG00000022335) #26	SDC3 (ENSBGRG00000022187) #28	LAPTM5 (ENSBGRG00000022099) #29	MATN1 (ENSBGRG00000022057) #30	PTPRU (ENSBGRG00000021855) #31	MECR (ENSBGRG00000021789) #32	SRSF4 (ENSBGRG00000021699) #33	TMEM200B (ENSBGRG00000021675)	EPB41 (ENSBGRG00000016000) #34	OPRD1 (ENSBGRG00000015656) #35	YTHDF2 (ENSBGRG00000015573) #37
Wild yak	MODERN SPECIES	1876	TXLNA (ENSBMUG00000008713) #9	ENSBMUG00000008700	KPNA6 (ENSBMUG00000008689) #10	TMEM39B (ENSBMUG00000008680) #11	KHDRBS1 (ENSBMUG00000008662) #12	PTP4A2 (ENSBMUG00000008583) #14	ENSBMUG00000008539 #15	ADGRB2 (ENSBMUG00000008460) #16	COL16A1 (ENSBMUG00000008384) #17	PEF1 (ENSBMUG00000008334) #18	HCRTR1 (ENSBMUG00000008325) #19	TINAGL1 (ENSBMUG00000008291) #20	ENSBMUG00000008184	ENSBMUG00000008171	SERINC2 (ENSBMUG00000008159) #21	ENSBMUG00000008083 #22	ZCCHC17 (ENSBMUG00000008010) #23	SNRNP40 (ENSBMUG00000007915) #24	NKAIN1 (ENSBMUG00000007902) #25	PUM1 (ENSBMUG00000007497) #26	SDC3 (ENSBMUG00000007334) #28	LAPTM5 (ENSBMUG00000007307) #29	MATN1 (ENSBMUG00000007280) #30
Bos_b	ANCESTRAL SPECIES	20	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT01030000234623.a.a.b #21	ENSGT00960000191283	ENSGT00940000155104.q.a #22	ENSGT00510000047363.c #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.b.a	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00390000007797.a.a	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35
Hybrid Bos Indicus	MODERN SPECIES	11	TMEM39B (ENSBIXG00005013001) #11	KHDRBS1 (ENSBIXG00005012974) #12	ENSBIXG00005012926	ENSBIXG00005001439	PTP4A2 (ENSBIXG00005012848) #14	SPOCD1 (ENSBIXG00005001401) #15	ADGRB2 (ENSBIXG00005012674) #16	COL16A1 (ENSBIXG00005007002) #17	ENSBIXG00005001345	PEF1 (ENSBIXG00005012479) #18	HCRTR1 (ENSBIXG00005012446) #19	TINAGL1 (ENSBIXG00005012419) #20	ENSBIXG00005001320	SERINC2 (ENSBIXG00005012372) #21	ENSBIXG00005001298	ENSBIXG00005012303 #22	ZCCHC17 (ENSBIXG00005001280) #23	SNRNP40 (ENSBIXG00005001257) #24	NKAIN1 (ENSBIXG00005012157) #25	ENSBIXG00005012110	PUM1 (ENSBIXG00005006792) #26	ENSBIXG00005011490	SDC3 (ENSBIXG00005011445) #28	LAPTM5 (ENSBIXG00005011398) #29	MATN1 (ENSBIXG00005001095) #30	ENSBIXG00005011338	PTPRU (ENSBIXG00005001071) #31	MECR (ENSBIXG00005007751) #32	SRSF4 (ENSBIXG00005011082) #33	TMEM200B (ENSBIXG00005007469)	EPB41 (ENSBIXG00005010985) #34
Cow	MODERN SPECIES	11	ENSBTAG00000048869 #9	CLDN12 (ENSBTAG00000019486)	SHOX (ENSBTAG00000026788)	ENSBTAG00000051364	ENSBTAG00000040518	PTP4A2 (ENSBTAG00000039121) #14	SPOCD1 (ENSBTAG00000015715) #15	ADGRB2 (ENSBTAG00000010657) #16	COL16A1 (ENSBTAG00000010050) #17	PEF1 (ENSBTAG00000010378) #18	HCRTR1 (ENSBTAG00000010366) #19	TINAGL1 (ENSBTAG00000013235) #20	ENSBTAG00000039994	SERINC2 (ENSBTAG00000035081) #21	ENSBTAG00000052286	FABP3 (ENSBTAG00000016819) #22	ZCCHC17 (ENSBTAG00000016818) #23	SNRNP40 (ENSBTAG00000016817) #24	NKAIN1 (ENSBTAG00000020159) #25	ENSBTAG00000053976	PUM1 (ENSBTAG00000018979) #26	SDC3 (ENSBTAG00000026676) #28	LAPTM5 (ENSBTAG00000005477) #29	MATN1 (ENSBTAG00000003479) #30	ENSBTAG00000053024	PTPRU (ENSBTAG00000012848) #31	MECR (ENSBTAG00000017253) #32	SRSF4 (ENSBTAG00000013309) #33	TMEM200B (ENSBTAG00000047524)	EPB41 (ENSBTAG00000006667) #34	OPRD1 (ENSBTAG00000003202) #35
American bison	MODERN SPECIES	3002	TXLNA (ENSBBBG00000012545) #9	ENSBBBG00000012551	KPNA6 (ENSBBBG00000002406) #10	TMEM39B (ENSBBBG00000012580) #11	KHDRBS1 (ENSBBBG00000001836) #12	ENSBBBG00000012624	PTP4A2 (ENSBBBG00000012700) #14	ENSBBBG00000002452 #15	ADGRB2 (ENSBBBG00000013079) #16	COL16A1 (ENSBBBG00000013173) #17	PEF1 (ENSBBBG00000013178) #18	HCRTR1 (ENSBBBG00000013200) #19	TINAGL1 (ENSBBBG00000013245) #20	ENSBBBG00000001634	SERINC2 (ENSBBBG00000013269) #21	ENSBBBG00000002689 #22	ZCCHC17 (ENSBBBG00000013338) #23	SNRNP40 (ENSBBBG00000013361) #24	NKAIN1 (ENSBBBG00000001589) #25	PUM1 (ENSBBBG00000013598) #26	SDC3 (ENSBBBG00000002842) #28	LAPTM5 (ENSBBBG00000013658) #29	MATN1 (ENSBBBG00000013670) #30
Siberian musk deer	MODERN SPECIES	353	TXLNA (ENSMMSG00000004929) #9	KPNA6 (ENSMMSG00000004973) #10	TMEM39B (ENSMMSG00000005031) #11	KHDRBS1 (ENSMMSG00000005091) #12	PTP4A2 (ENSMMSG00000005170) #14	ENSMMSG00000005352	ENSMMSG00000005389 #15	ADGRB2 (ENSMMSG00000005621) #16	COL16A1 (ENSMMSG00000007557) #17	PEF1 (ENSMMSG00000007893) #18	HCRTR1 (ENSMMSG00000007936) #19	ENSMMSG00000007956	TINAGL1 (ENSMMSG00000007995) #20	ENSMMSG00000008074	SERINC2 (ENSMMSG00000008124) #21	FABP3 (ENSMMSG00000008209) #22	ENSMMSG00000008249 #23	SNRNP40 (ENSMMSG00000008462) #24	NKAIN1 (ENSMMSG00000008509) #25	PUM1 (ENSMMSG00000008579) #26	SDC3 (ENSMMSG00000009056) #28	LAPTM5 (ENSMMSG00000009109) #29	MATN1 (ENSMMSG00000009155) #30	ENSMMSG00000009209	PTPRU (ENSMMSG00000009248) #31	MECR (ENSMMSG00000009362) #32	SRSF4 (ENSMMSG00000009418) #33	TMEM200B (ENSMMSG00000009448)	EPB41 (ENSMMSG00000009727) #34	OPRD1 (ENSMMSG00000017354) #35	YTHDF2 (ENSMMSG00000017379) #37
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000155104.q.b #22
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000155104.q.b #22
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000155104.q.b #22
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.v #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT00390000006225.d	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.b #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00960000190201	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.v #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT00390000006225.d	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.b #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.v #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT00390000006225.d	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.q.b #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00950000183120.e.b.a.b	ENSGT00940000161153	ENSGT00940000162022	ENSGT00440000033720.a	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000016722	ENSGT00940000155212	ENSGT00410000025556.a.b	ENSGT00940000154399.a.b	ENSGT00940000158265	ENSGT00940000155821	ENSGT00390000004175	ENSGT00940000153904.a	ENSGT00940000155104.q.b #22	ENSGT00510000047363 #23	ENSGT00390000009151	ENSGT00950000182965.b.`b.b	ENSGT00950000183035.a.b.a	ENSGT00950000182803.B.d.b	ENSGT00940000159771	ENSGT00940000160879	ENSGT00940000154433.b.n	ENSGT00940000162067	ENSGT00940000158619.k	ENSGT00510000047168	ENSGT00940000165039	ENSGT00390000001798	ENSGT00390000006915.c.c.b	ENSGT00390000013608
Monodontidae	ANCESTRAL SPECIES		ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383.h.a #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722.v #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT00950000182995.e.a.b	ENSGT00390000006225.d	ENSGT00550000076338	ENSGT01030000234623.a.a.b #21	ENSGT01030000236649	ENSGT00940000155104.q.b #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00390000014084.ab.b.b	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Beluga whale	MODERN SPECIES	74	IQCC (ENSDLEG00000016388) #7	TXLNA (ENSDLEG00000016350) #9	KPNA6 (ENSDLEG00000016316) #10	TMEM39B (ENSDLEG00000016227) #11	KHDRBS1 (ENSDLEG00000016203) #12	PTP4A2 (ENSDLEG00000016188) #14	ENSDLEG00000016158 #15	ADGRB2 (ENSDLEG00000015967) #16	PEF1 (ENSDLEG00000015936) #18	HCRTR1 (ENSDLEG00000015922) #19	TINAGL1 (ENSDLEG00000021843) #20	ENSDLEG00000021842	ENSDLEG00000021841	SERINC2 (ENSDLEG00000021837) #21	ENSDLEG00000021835	FABP3 (ENSDLEG00000021833) #22	ZCCHC17 (ENSDLEG00000021831) #23	SNRNP40 (ENSDLEG00000021828) #24	NKAIN1 (ENSDLEG00000021826) #25	PUM1 (ENSDLEG00000021801) #26	SDC3 (ENSDLEG00000021797) #28	LAPTM5 (ENSDLEG00000021794) #29	MATN1 (ENSDLEG00000021791) #30
Narwhal	MODERN SPECIES	304	KPNA6 (ENSMMNG00015010896) #10	TMEM39B (ENSMMNG00015010925) #11	KHDRBS1 (ENSMMNG00015010948) #12	ENSMMNG00015010999 #14	ENSMMNG00015011068 #15	ADGRB2 (ENSMMNG00015011149) #16	COL16A1 (ENSMMNG00015011287) #17	PEF1 (ENSMMNG00015011366) #18	HCRTR1 (ENSMMNG00015011382) #19	TINAGL1 (ENSMMNG00015011411) #20	ENSMMNG00015011437	ENSMMNG00015011457	SERINC2 (ENSMMNG00015011481) #21	ENSMMNG00015011517	ENSMMNG00015011537	FABP3 (ENSMMNG00015011554) #22	ZCCHC17 (ENSMMNG00015011615) #23	SNRNP40 (ENSMMNG00015011699) #24	NKAIN1 (ENSMMNG00015011715) #25	PUM1 (ENSMMNG00015011776) #26	SDC3 (ENSMMNG00015011885) #28	LAPTM5 (ENSMMNG00015011902) #29	MATN1 (ENSMMNG00015011923) #30	ENSMMNG00015011944	PTPRU (ENSMMNG00015011976) #31	MECR (ENSMMNG00015012012) #32	SRSF4 (ENSMMNG00015012035) #33	TMEM200B (ENSMMNG00015012047)	EPB41 (ENSMMNG00015012190) #34	OPRD1 (ENSMMNG00015012577) #35	YTHDF2 (ENSMMNG00015012587) #37
Dolphin	MODERN SPECIES	2955															SERINC2 (ENSTTRG00000014874) #21	FABP3 (ENSTTRG00000014872) #22	ZCCHC17 (ENSTTRG00000014870) #23	SNRNP40 (ENSTTRG00000014868) #24	NKAIN1 (ENSTTRG00000014866) #25
Sperm whale	MODERN SPECIES	1081															SERINC2 (ENSPCTG00005017054) #21	FABP3 (ENSPCTG00005017306) #22
Blue whale	MODERN SPECIES		IQCC (ENSBMSG00010005059) #7	CCDC28B (ENSBMSG00010005052) #8	TXLNA (ENSBMSG00010005044) #9	ENSBMSG00010005038 #10	TMEM39B (ENSBMSG00010005017) #11	KHDRBS1 (ENSBMSG00010005001) #12	PTP4A2 (ENSBMSG00010004970) #14	ENSBMSG00010004953 #15	COL16A1 (ENSBMSG00010004723) #17	ENSBMSG00010004691 #18	HCRTR1 (ENSBMSG00010004674) #19	TINAGL1 (ENSBMSG00010004633) #20	ENSBMSG00010004611	ENSBMSG00010004596	SERINC2 (ENSBMSG00010004567) #21	FABP3 (ENSBMSG00010004517) #22	ZCCHC17 (ENSBMSG00010004489) #23	SNRNP40 (ENSBMSG00010004466) #24	NKAIN1 (ENSBMSG00010004451) #25	PUM1 (ENSBMSG00010004270) #26	SDC3 (ENSBMSG00010004227) #28	LAPTM5 (ENSBMSG00010004217) #29	MATN1 (ENSBMSG00010004210) #30	ENSBMSG00010004192	PTPRU (ENSBMSG00010004130) #31	ENSBMSG00010004108	MECR (ENSBMSG00010004086) #32	SRSF4 (ENSBMSG00010004066) #33	TMEM200B (ENSBMSG00010004052)	EPB41 (ENSBMSG00010001365) #34	OPRD1 (ENSBMSG00010000919) #35
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000160757	ENSGT00940000162749	ENSGT00940000162559	ENSGT00940000163368	ENSGT00940000155233.bb.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00550000076374	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000162559	ENSGT00940000163368	ENSGT00940000155233.bb.a	ENSGT00940000163666	ENSGT00940000155233.bb.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00550000076374	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000162559	ENSGT00940000163368	ENSGT00940000155233.bb.a	ENSGT00940000163666	ENSGT00940000155233.bb.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00550000076374	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000162559	ENSGT00940000163666	ENSGT00940000155233.bb.b.b	ENSGT00940000163368	ENSGT00940000155233.bb.a	ENSGT00940000155233.bb.b.a	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620.a	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Bos	ANCESTRAL SPECIES	15	ENSGT00940000162559	ENSGT00940000163666	ENSGT00940000155233.bb.b.b	ENSGT00940000163368	ENSGT00940000155233.bb.a	ENSGT00940000155233.bb.b.a	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620.a	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000155233.bb.b.a	ENSGT00940000177749	ENSGT00390000012959.b.u	ENSGT00940000162749	ENSGT00940000163368	ENSGT00940000155233.bb.b.b	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355.g	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620.a	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Cow	MODERN SPECIES	25	CXCL5 (ENSBTAG00000009812)	ENSBTAG00000011961	CXCL2 (ENSBTAG00000027513)	ENSBTAG00000051891	CXCL3 (ENSBTAG00000037778)	GRO1 (ENSBTAG00000037558)	MTHFD2L (ENSBTAG00000043960)	EPGN (ENSBTAG00000004052)	EREG (ENSBTAG00000010273)	AREG (ENSBTAG00000018134)	BTC (ENSBTAG00000004237)	PARM1 (ENSBTAG00000015919)	RCHY1 (ENSBTAG00000007189)	THAP6 (ENSBTAG00000007190)	ODAPH (ENSBTAG00000050403)	ENSBTAG00000046788 #22	CDKL2 (ENSBTAG00000014038)	G3BP2 (ENSBTAG00000014041)	USO1 (ENSBTAG00000017028)	PPEF2 (ENSBTAG00000015449)	NAAA (ENSBTAG00000019478)	SDAD1 (ENSBTAG00000007639)	CXCL9 (ENSBTAG00000050852)	ART3 (ENSBTAG00000010954)	CXCL10 (ENSBTAG00000001725)	CXCL11 (ENSBTAG00000005603)	NUP54 (ENSBTAG00000010955)	SCARB2 (ENSBTAG00000010956)	ENSBTAG00000053885	ENSBTAG00000004921	STBD1 (ENSBTAG00000010389)
Hybrid Bos Indicus	MODERN SPECIES	25	CXCL8 (ENSBIXG00005025908)	ENSBIXG00005025852	CXCL6 (ENSBIXG00005025825)	ENSBIXG00005005893	ENSBIXG00005025724	ENSBIXG00005025636	MTHFD2L (ENSBIXG00005025607)	EPGN (ENSBIXG00005025481)	EREG (ENSBIXG00005025352)	AREG (ENSBIXG00005025328)	BTC (ENSBIXG00005004302)	PARM1 (ENSBIXG00005025268)	RCHY1 (ENSBIXG00005025176)	THAP6 (ENSBIXG00005024993)	ODAPH (ENSBIXG00005024923)	ENSBIXG00005024906 #22	CDKL2 (ENSBIXG00005004240)	G3BP2 (ENSBIXG00005024751)	ENSBIXG00005004190	USO1 (ENSBIXG00005024502)	PPEF2 (ENSBIXG00005024385)	NAAA (ENSBIXG00005004158)	ENSBIXG00005024245	CXCL9 (ENSBIXG00005024192)	ART3 (ENSBIXG00005024126)	CXCL10 (ENSBIXG00005006677)	CXCL11 (ENSBIXG00005023964)	SCARB2 (ENSBIXG00005023859)	ENSBIXG00005023711	CCDC158 (ENSBIXG00005023597)	ENSBIXG00005004011
Bos_a	ANCESTRAL SPECIES	21	ENSGT00940000162749	ENSGT00940000162559	ENSGT00940000163666	ENSGT00940000155233.bb.b.b	ENSGT00940000163368	ENSGT00940000155233.bb.a	ENSGT00940000160901	ENSGT00510000048556	ENSGT00510000048748	ENSGT00940000160696	ENSGT00940000160508	ENSGT00390000014545	ENSGT00390000008853	ENSGT00940000162692	ENSGT00390000005348	ENSGT00940000155104.q.b #22	ENSGT00940000160368	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000157870	ENSGT00530000063548.A	ENSGT00390000010355	ENSGT00940000161751	ENSGT00940000161759	ENSGT00530000064263	ENSGT01030000234601.c.b.a	ENSGT00390000013620.a	ENSGT00940000153372.A.e.a.a	ENSGT00940000162425	ENSGT00390000007731	ENSGT00390000013339
Wild yak	MODERN SPECIES	2356														ENSBMUG00000017128	ODAPH (ENSBMUG00000017110)	ENSBMUG00000017095 #22	CDKL2 (ENSBMUG00000017084)	G3BP2 (ENSBMUG00000017057)	USO1 (ENSBMUG00000017017)	PPEF2 (ENSBMUG00000016959)	NAAA (ENSBMUG00000016913)	SDAD1 (ENSBMUG00000016860)	CXCL9 (ENSBMUG00000016804)	CXCL10 (ENSBMUG00000016790)
Domestic yak	MODERN SPECIES	25	ENSBGRG00000020336	ENSBGRG00000020322	CXCL6 (ENSBGRG00000020220)	ENSBGRG00000020163	ENSBGRG00000019854	ENSBGRG00000019815	MTHFD2L (ENSBGRG00000019648)	EPGN (ENSBGRG00000019518)	EREG (ENSBGRG00000019471)	AREG (ENSBGRG00000019294)	BTC (ENSBGRG00000019197)	PARM1 (ENSBGRG00000019090)	RCHY1 (ENSBGRG00000018556)	THAP6 (ENSBGRG00000018407)	ODAPH (ENSBGRG00000018359)	ENSBGRG00000018233 #22	CDKL2 (ENSBGRG00000018088)	ENSBGRG00000018049	G3BP2 (ENSBGRG00000017795)	USO1 (ENSBGRG00000017022)	PPEF2 (ENSBGRG00000016818)	NAAA (ENSBGRG00000016644)	SDAD1 (ENSBGRG00000015906)	CXCL9 (ENSBGRG00000015837)	CXCL10 (ENSBGRG00000015786)	CXCL11 (ENSBGRG00000015719)	ART3 (ENSBGRG00000014983)	NUP54 (ENSBGRG00000014836)	ENSBGRG00000014820	SCARB2 (ENSBGRG00000014740)	FAM47E (ENSBGRG00000014524)
American bison	MODERN SPECIES	3021	CXCL6 (ENSBBBG00000017224)	PPBP (ENSBBBG00000004261)	ENSBBBG00000017239	ENSBBBG00000017247	ENSBBBG00000004273	ENSBBBG00000017266	MTHFD2L (ENSBBBG00000017281)	EPGN (ENSBBBG00000017336)	EREG (ENSBBBG00000008931)	AREG (ENSBBBG00000017367)	BTC (ENSBBBG00000017380)	PARM1 (ENSBBBG00000007577)	ENSBBBG00000008602	THAP6 (ENSBBBG00000004316)	ODAPH (ENSBBBG00000004321)	ENSBBBG00000017475 #22	CDKL2 (ENSBBBG00000007268)	G3BP2 (ENSBBBG00000004352)	USO1 (ENSBBBG00000017656)	PPEF2 (ENSBBBG00000017723)	NAAA (ENSBBBG00000004382)	SDAD1 (ENSBBBG00000017820)	CXCL9 (ENSBBBG00000017829)	CXCL10 (ENSBBBG00000007950)	CXCL11 (ENSBBBG00000008603)	ENSBBBG00000017857	ENSBBBG00000017862	ENSBBBG00000004403	SCARB2 (ENSBBBG00000018067)	ENSBBBG00000018082	STBD1 (ENSBBBG00000018090)
Yarkand deer	MODERN SPECIES	29	CXCL6 (ENSCHYG00000002113)	PPBP (ENSCHYG00000002134)	ENSCHYG00000002148	ENSCHYG00000002180	ENSCHYG00000002199	ENSCHYG00000002206	MTHFD2L (ENSCHYG00000002226)	EPGN (ENSCHYG00000002264)	EREG (ENSCHYG00000002301)	AREG (ENSCHYG00000002308)	BTC (ENSCHYG00000002331)	PARM1 (ENSCHYG00000002352)	RCHY1 (ENSCHYG00000002396)	THAP6 (ENSCHYG00000002523)	ODAPH (ENSCHYG00000002541)	ENSCHYG00000002546 #22	CDKL2 (ENSCHYG00000002564)	G3BP2 (ENSCHYG00000002607)	USO1 (ENSCHYG00000002656)	PPEF2 (ENSCHYG00000002796)	NAAA (ENSCHYG00000002828)	SDAD1 (ENSCHYG00000002887)	CXCL9 (ENSCHYG00000003003)	CXCL10 (ENSCHYG00000003012)	CXCL11 (ENSCHYG00000003024)	ART3 (ENSCHYG00000003055)	NUP54 (ENSCHYG00000003162)	SCARB2 (ENSCHYG00000003217)	FAM47E (ENSCHYG00000003357)	STBD1 (ENSCHYG00000003378)	ENSCHYG00000003398
Suina	ANCESTRAL SPECIES																	ENSGT00940000155104.q.b #22
Chacoan peccary	MODERN SPECIES	808															SERINC2 (ENSCWAG00000016891) #21	ENSCWAG00000016856 #22	ZCCHC17 (ENSCWAG00000016769) #23	SNRNP40 (ENSCWAG00000016660) #24	NKAIN1 (ENSCWAG00000016631) #25	PUM1 (ENSCWAG00000016294) #26	SDC3 (ENSCWAG00000016221) #28	LAPTM5 (ENSCWAG00000016188) #29	MATN1 (ENSCWAG00000016130) #30	PTPRU (ENSCWAG00000016058) #31	MECR (ENSCWAG00000016005) #32	SRSF4 (ENSCWAG00000015977) #33	TMEM200B (ENSCWAG00000015967)	EPB41 (ENSCWAG00000007295) #34	OPRD1 (ENSCWAG00000007029) #35	YTHDF2 (ENSCWAG00000007018) #37	GMEB1 (ENSCWAG00000006958)
Artiodactyla	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Suina	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Pig	MODERN SPECIES	1	ENSSSCG00000053351	ENSSSCG00000010952	ENSSSCG00000055078	ENSSSCG00000063532	GAS1 (ENSSSCG00000056862)	ENSSSCG00000044562	DAPK1 (ENSSSCG00000010949)	CTSL (ENSSSCG00000010948)	FBP2 (ENSSSCG00000010947)	FBP1 (ENSSSCG00000031174)	ENSSSCG00000010943	FANCC (ENSSSCG00000033654)	PTCH1 (ENSSSCG00000027312)	ERCC6L2 (ENSSSCG00000010941)	HSD17B3 (ENSSSCG00000010937)	ENSSSCG00000010936 #22	SLC35D2 (ENSSSCG00000039368)	ZNF367 (ENSSSCG00000028981)	ENSSSCG00000039643	HABP4 (ENSSSCG00000035956)	ENSSSCG00000027557	PRXL2C (ENSSSCG00000011169)	ZNF510 (ENSSSCG00000011168)	ZNF782 (ENSSSCG00000011167)	ENSSSCG00000031186	CTSV (ENSSSCG00000011171)	FAM240B (ENSSSCG00000032993)	CYB5R1 (ENSSSCG00000010929)	ADIPOR1 (ENSSSCG00000010931)	ENSSSCG00000034258	KLHL12 (ENSSSCG00000022787)
Chacoan peccary	MODERN SPECIES	104									ENSCWAG00000014446	PSMC4 (ENSCWAG00000014489)	ENSCWAG00000014583	FBL (ENSCWAG00000014924)	DYRK1B (ENSCWAG00000014960)	CLC (ENSCWAG00000015077)	EID2 (ENSCWAG00000015148)	ENSCWAG00000015158 #22	DLL3 (ENSCWAG00000015192)	TIMM50 (ENSCWAG00000015276)	SUPT5H (ENSCWAG00000015358)	ENSCWAG00000015528	ENSCWAG00000015564	PLEKHG2 (ENSCWAG00000015656)	ZFP36 (ENSCWAG00000015894)	MED29 (ENSCWAG00000015904)	PAF1 (ENSCWAG00000015941)	SAMD4B (ENSCWAG00000016071)	GMFG (ENSCWAG00000016145)	LRFN1 (ENSCWAG00000016323)	ENSCWAG00000016366	ENSCWAG00000016418	ENSCWAG00000016462
Artiodactyla_a	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.r #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209.f #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00950000185227	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37
Arabian camel	MODERN SPECIES	4	DCDC2B (ENSCDRG00005020450)	IQCC (ENSCDRG00005020440) #7	CCDC28B (ENSCDRG00005020426) #8	TXLNA (ENSCDRG00005020412) #9	KPNA6 (ENSCDRG00005020401) #10	TMEM39B (ENSCDRG00005020379) #11	KHDRBS1 (ENSCDRG00005020356) #12	PTP4A2 (ENSCDRG00005020308) #14	ENSCDRG00005020288 #15	ADGRB2 (ENSCDRG00005017991) #16	COL16A1 (ENSCDRG00005017669) #17	PEF1 (ENSCDRG00005017625) #18	HCRTR1 (ENSCDRG00005017596) #19	TINAGL1 (ENSCDRG00005017474) #20	SERINC2 (ENSCDRG00005016957) #21	FABP3 (ENSCDRG00005016894) #22	ZCCHC17 (ENSCDRG00005016796) #23	SNRNP40 (ENSCDRG00005016675) #24	NKAIN1 (ENSCDRG00005016643) #25	PUM1 (ENSCDRG00005015603) #26	SDC3 (ENSCDRG00005015511) #28	LAPTM5 (ENSCDRG00005015458) #29	MATN1 (ENSCDRG00005015422) #30	PTPRU (ENSCDRG00005015095) #31	MECR (ENSCDRG00005014978) #32	ENSCDRG00005014957	SRSF4 (ENSCDRG00005014921) #33	TMEM200B (ENSCDRG00005014903)	EPB41 (ENSCDRG00005007158) #34	OPRD1 (ENSCDRG00005006966) #35	YTHDF2 (ENSCDRG00005006917) #37
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000155104.r #22
Vaquita	MODERN SPECIES		CCDC28B (ENSPSNG00000011624) #8	TXLNA (ENSPSNG00000011587) #9	KPNA6 (ENSPSNG00000011526) #10	KHDRBS1 (ENSPSNG00000011403) #12	ENSPSNG00000011229 #14	ENSPSNG00000011074 #15	ADGRB2 (ENSPSNG00000009546) #16	COL16A1 (ENSPSNG00000008940) #17	PEF1 (ENSPSNG00000008855) #18	HCRTR1 (ENSPSNG00000008808) #19	TINAGL1 (ENSPSNG00000008736) #20	ENSPSNG00000008678	ENSPSNG00000008655	SERINC2 (ENSPSNG00000008544) #21	ENSPSNG00000008491	FABP3 (ENSPSNG00000008448) #22	ZCCHC17 (ENSPSNG00000008363) #23	SNRNP40 (ENSPSNG00000008336) #24	NKAIN1 (ENSPSNG00000008300) #25	PUM1 (ENSPSNG00000007980) #26	SDC3 (ENSPSNG00000007871) #28	LAPTM5 (ENSPSNG00000007821) #29	MATN1 (ENSPSNG00000007748) #30	ENSPSNG00000007731	PTPRU (ENSPSNG00000007606) #31	MECR (ENSPSNG00000007523) #32	SRSF4 (ENSPSNG00000007490) #33	TMEM200B (ENSPSNG00000007470)	EPB41 (ENSPSNG00000006874) #34	OPRD1 (ENSPSNG00000006621) #35	ENSPSNG00000006599
Eulipotyphla	ANCESTRAL SPECIES	2121																ENSGT00940000155104 #22	ENSGT00510000047363 #23
Common shrew	MODERN SPECIES	12155																FABP3 (ENSSARG00000013720) #22
Hedgehog	MODERN SPECIES	2207																FABP3 (ENSEEUG00000014876) #22	ZCCHC17 (ENSEEUG00000014855) #23
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00940000161946	ENSGT00390000017195 #7	ENSGT00500000044870.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Xenarthra	ANCESTRAL SPECIES	561															ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30
Sloth	MODERN SPECIES	1916																FABP3 (ENSCHOG00000001585) #22	ZCCHC17 (ENSCHOG00000001581) #23
Armadillo	MODERN SPECIES	2273															SERINC2 (ENSDNOG00000014636) #21	FABP3 (ENSDNOG00000045861) #22	ENSDNOG00000000509 #23	SNRNP40 (ENSDNOG00000005077) #24	NKAIN1 (ENSDNOG00000043368) #25	PUM1 (ENSDNOG00000010939) #26	SDC3 (ENSDNOG00000039142) #28	LAPTM5 (ENSDNOG00000048917) #29	MATN1 (ENSDNOG00000042938) #30
Afrotheria	ANCESTRAL SPECIES	15	ENSGT00940000162781	ENSGT00390000017195 #7	ENSGT00500000044870.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Tenrec	MODERN SPECIES	9100																FABP3 (ENSETEG00000007424) #22	ZCCHC17 (ENSETEG00000007421) #23
Afrotheria_a	ANCESTRAL SPECIES	15	ENSGT00940000162781	ENSGT00390000017195 #7	ENSGT00500000044870.b #8	ENSGT00940000158303 #9	ENSGT01050000244950.a.b #10	ENSGT00390000018895.b #11	ENSGT00940000155718 #12	ENSGT00940000154383 #14	ENSGT00940000162194 #15	ENSGT00940000160103 #16	ENSGT00940000161782 #17	ENSGT00940000155722 #18	ENSGT01070000253744.a.a.b.a #19	ENSGT00940000160023 #20	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Hyrax	MODERN SPECIES	1714																FABP3 (ENSPCAG00000011730) #22	ZCCHC17 (ENSPCAG00000011665) #23
Elephant	MODERN SPECIES	332	EIF3I (ENSLAFG00000017026)	TMEM234 (ENSLAFG00000017021)	IQCC (ENSLAFG00000017012) #7	CCDC28B (ENSLAFG00000027188) #8	TXLNA (ENSLAFG00000014937) #9	KPNA6 (ENSLAFG00000017005) #10	TMEM39B (ENSLAFG00000009415) #11	KHDRBS1 (ENSLAFG00000009414) #12	PTP4A2 (ENSLAFG00000008462) #14	ENSLAFG00000003350 #15	COL16A1 (ENSLAFG00000003775) #17	PEF1 (ENSLAFG00000010012) #18	HCRTR1 (ENSLAFG00000010009) #19	TINAGL1 (ENSLAFG00000010005) #20	SERINC2 (ENSLAFG00000005871) #21	FABP3 (ENSLAFG00000022206) #22	ZCCHC17 (ENSLAFG00000015364) #23	SNRNP40 (ENSLAFG00000013976) #24	NKAIN1 (ENSLAFG00000017512) #25	PUM1 (ENSLAFG00000003178) #26	SDC3 (ENSLAFG00000013200) #28	LAPTM5 (ENSLAFG00000029640) #29	MATN1 (ENSLAFG00000012878) #30	ENSLAFG00000032386	PTPRU (ENSLAFG00000010090) #31	MECR (ENSLAFG00000002576) #32	SRSF4 (ENSLAFG00000002575) #33	TMEM200B (ENSLAFG00000031258)	EPB41 (ENSLAFG00000002571) #34	OPRD1 (ENSLAFG00000017219) #35	YTHDF2 (ENSLAFG00000030451) #37
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000158624	ENSGT00940000158725	ENSGT00390000003084	ENSGT00940000154169.B	ENSGT00390000006113	ENSGT00940000160531	ENSGT00940000156792	ENSGT00940000160928	ENSGT01090000260044.A.a.b.a.b	ENSGT01090000260044.A.a.b.a.a.a.b	ENSGT00940000161580.a	ENSGT00940000160840	ENSGT00940000156275	ENSGT00940000158433	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Opossum	MODERN SPECIES	3	SVBP (ENSMODG00000039243)	ERMAP (ENSMODG00000017153)	SLC2A1 (ENSMODG00000017148)	ENSMODG00000017141	ENSMODG00000050145	ENSMODG00000037229	ENSMODG00000023292	ENSMODG00000051065	ENSMODG00000017132	ZSCAN20 (ENSMODG00000017129)	ENSMODG00000043984	PHC2 (ENSMODG00000017114)	ZNF362 (ENSMODG00000017096)	TRIM62 (ENSMODG00000017094)	SERINC2 (ENSMODG00000017090) #21	ENSMODG00000017087 #22	ENSMODG00000017082 #23	SNRNP40 (ENSMODG00000017078) #24	ENSMODG00000040372	ENSMODG00000017074 #25	PUM1 (ENSMODG00000017067) #26	SDC3 (ENSMODG00000017056) #28	LAPTM5 (ENSMODG00000017054) #29	MATN1 (ENSMODG00000017050) #30	ENSMODG00000000992	SPSB1 (ENSMODG00000009234)	H6PD (ENSMODG00000009247)	GPR157 (ENSMODG00000009254)	ENSMODG00000009329	ENSMODG00000050951	SLC2A7 (ENSMODG00000023285)
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000158624	ENSGT00940000158725	ENSGT00390000003084	ENSGT00390000006113	ENSGT00940000160531	ENSGT00940000156792	ENSGT00940000160928	ENSGT01090000260044.A.a.b.a.b	ENSGT01090000260044.A.a.b.a.a.a.b	ENSGT00940000161580.b	ENSGT00940000161580.a	ENSGT00940000160840	ENSGT00940000156275	ENSGT00940000158433	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000024511	ENSSHAG00000028636	ENSSHAG00000025510	ENSSHAG00000025392	ENSSHAG00000002107	ENSSHAG00000020871	ENSSHAG00000031166	ENSSHAG00000030601	ENSSHAG00000004699	ENSSHAG00000005539	ENSSHAG00000006099	ENSSHAG00000002109	ENSSHAG00000031403	ENSSHAG00000006975	ENSSHAG00000028124 #21	ENSSHAG00000008651 #22	ZCCHC17 (ENSSHAG00000020544) #23	SNRNP40 (ENSSHAG00000027894) #24	PUM1 (ENSSHAG00000010918) #26	SDC3 (ENSSHAG00000028518) #28	LAPTM5 (ENSSHAG00000013255) #29	ENSSHAG00000031333	PTPRU (ENSSHAG00000017352) #31	SRSF4 (ENSSHAG00000024879) #33	TMEM200B (ENSSHAG00000025196)	EPB41 (ENSSHAG00000011604) #34	OPRD1 (ENSSHAG00000024576) #35	YTHDF2 (ENSSHAG00000009502) #37	GMEB1 (ENSSHAG00000009099)	TAF12 (ENSSHAG00000008563)	ENSSHAG00000030345
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000158624	ENSGT00940000158725	ENSGT00390000003084	ENSGT00390000006113	ENSGT00940000160531	ENSGT00940000156792	ENSGT00940000160928	ENSGT01090000260044.A.a.b.a.b	ENSGT01090000260044.A.a.b.a.a.a.b	ENSGT00940000161580.b	ENSGT00940000161580.a	ENSGT00940000160840	ENSGT00940000156275	ENSGT00940000158433	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104 #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
Wallaby	MODERN SPECIES	2984																ENSMEUG00000012501 #22
Diprotodontia_a	DUPLICATION
Diprotodontia_a	DUPLICATION
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000155104.rb.a #22
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1043	MIEF2 (ENSVURG00010010325)	TOP3A (ENSVURG00010010334)	SMCR8 (ENSVURG00010010376)	SHMT1 (ENSVURG00010010383)	ENSVURG00010010392	TMED7 (ENSVURG00010010397)	CDO1 (ENSVURG00010010405)	ATG12 (ENSVURG00010010412)	AP3S1 (ENSVURG00010010420)	LVRN (ENSVURG00010010448)	ARL14EPL (ENSVURG00010010501)	COMMD10 (ENSVURG00010010528)	ENSVURG00010010548	SEMA6A (ENSVURG00010010569)	ENSVURG00010010599	ENSVURG00010010642 #22	ENSVURG00010010654	DTWD2 (ENSVURG00010010691)	DMXL1 (ENSVURG00010010777)	TNFAIP8 (ENSVURG00010011274)	HSD17B4 (ENSVURG00010011297)	PRR16 (ENSVURG00010011319)	ENSVURG00010011332	SRFBP1 (ENSVURG00010011339)	LOX (ENSVURG00010011351)	ENSVURG00010011370	SNCAIP (ENSVURG00010011390)	SNX2 (ENSVURG00010011441)	SNX24 (ENSVURG00010011487)	PPIC (ENSVURG00010011501)	PRDM6 (ENSVURG00010011514)
Common wonbat	MODERN SPECIES	1017	TTC7A (ENSVURG00010015349)	STPG4 (ENSVURG00010015336)	ENSVURG00010015322	EPCAM (ENSVURG00010015305)	MSH2 (ENSVURG00010015285)	KCNK12 (ENSVURG00010015272)	MSH6 (ENSVURG00010015249)	FBXO11 (ENSVURG00010015131)	FOXN2 (ENSVURG00010015092)	PPP1R21 (ENSVURG00010015035)	STON1 (ENSVURG00010015010)	GTF2A1L (ENSVURG00010014973)	LHCGR (ENSVURG00010014953)	FSHR (ENSVURG00010014932)	ENSVURG00010014912	ENSVURG00010014902 #22	ENSVURG00010014807	ENSVURG00010014760	ENSVURG00010014727	ENSVURG00010014704	CHAC2 (ENSVURG00010014690)	ASB3 (ENSVURG00010014669)	ERLEC1 (ENSVURG00010014651)	GPR75 (ENSVURG00010014637)	PSME4 (ENSVURG00010014522)	ENSVURG00010014502	ENSVURG00010014481	ENSVURG00010014468	SPTBN1 (ENSVURG00010014369)	EML6 (ENSVURG00010014289)	ENSVURG00010014197
koala	MODERN SPECIES	130																ENSPCIG00000026500 #22	RORB (ENSPCIG00000028184)	ENSPCIG00000030720	TRPM6 (ENSPCIG00000000057)	ENSPCIG00000003968	CARNMT1 (ENSPCIG00000003974)	NMRK1 (ENSPCIG00000019565)	OSTF1 (ENSPCIG00000009252)	ENSPCIG00000004091	ENSPCIG00000015817	GABBR2 (ENSPCIG00000015833)	ENSPCIG00000015897	ENSPCIG00000015899	ENSPCIG00000015901	PRSS8 (ENSPCIG00000015904)	KAT8 (ENSPCIG00000015907)
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000158725	ENSGT00390000003084	ENSGT00390000006113	ENSGT00940000160531	ENSGT00940000156792	ENSGT00940000160928	ENSGT01090000260044.A.a.b.a.b.n	ENSGT01090000260044.A.a.b.a.b.m	ENSGT01090000260044.A.a.b.a.a.a.b	ENSGT00940000161580.b	ENSGT00940000161580.a	ENSGT00940000160840	ENSGT00940000156275	ENSGT00940000158433	ENSGT01030000234623.a.a.b #21	ENSGT00940000155104.rb.b #22	ENSGT00510000047363 #23	ENSGT00940000155058 #24	ENSGT00940000159949 #25	ENSGT00940000158079 #26	ENSGT00940000160209 #28	ENSGT00940000153446.a.b #29	ENSGT00940000159638 #30	ENSGT00940000157151 #31	ENSGT00940000156592 #32	ENSGT00940000156213 #33	ENSGT00530000063698.b	ENSGT00940000157833 #34	ENSGT00940000157669 #35	ENSGT00940000156761 #37	ENSGT00410000025596.a.b
koala	DUPLICATION
koala	MODERN SPECIES	14	P3H1 (ENSPCIG00000009135)	C1orf50 (ENSPCIG00000034770)	SVBP (ENSPCIG00000028099)	ENSPCIG00000000100	SLC2A1 (ENSPCIG00000000549)	ENSPCIG00000027297	ENSPCIG00000003019	ENSPCIG00000005434	ENSPCIG00000034316	ENSPCIG00000014108	ENSPCIG00000014116	PHC2 (ENSPCIG00000014123)	ZNF362 (ENSPCIG00000014128)	TRIM62 (ENSPCIG00000014133)	SERINC2 (ENSPCIG00000014138) #21	ENSPCIG00000034380 #22	ZCCHC17 (ENSPCIG00000014143) #23	SNRNP40 (ENSPCIG00000014145) #24	NKAIN1 (ENSPCIG00000014146) #25	PUM1 (ENSPCIG00000014151) #26	SDC3 (ENSPCIG00000014180) #28	LAPTM5 (ENSPCIG00000014169) #29	MATN1 (ENSPCIG00000017737) #30	ENSPCIG00000022449	PTPRU (ENSPCIG00000022440) #31	MECR (ENSPCIG00000022434) #32	ENSPCIG00000022430	TMEM200B (ENSPCIG00000022428)	EPB41 (ENSPCIG00000022421) #34	OPRD1 (ENSPCIG00000022418) #35	YTHDF2 (ENSPCIG00000022413) #37
koala	MODERN SPECIES	223												USP35 (ENSPCIG00000011926)	GAB2 (ENSPCIG00000011923)	NARS2 (ENSPCIG00000004095)	TENM4 (ENSPCIG00000001624)	ENSPCIG00000015038 #22	ENSPCIG00000026467
Common wonbat	MODERN SPECIES	1014	ENSVURG00010019578	PPIH (ENSVURG00010019557)	ENSVURG00010019550	ENSVURG00010019501	ENSVURG00010019486	ENSVURG00010019479	ENSVURG00010019470	ENSVURG00010019459	ENSVURG00010019452	ENSVURG00010019447	ENSVURG00010019442	PHC2 (ENSVURG00010019423)	ZNF362 (ENSVURG00010019416)	TRIM62 (ENSVURG00010019411)	SERINC2 (ENSVURG00010019394) #21	ENSVURG00010019386 #22	ZCCHC17 (ENSVURG00010019375) #23	SNRNP40 (ENSVURG00010019367) #24	NKAIN1 (ENSVURG00010019360) #25	PUM1 (ENSVURG00010019299) #26	SDC3 (ENSVURG00010019281) #28	ENSVURG00010019274	LAPTM5 (ENSVURG00010019267) #29	MATN1 (ENSVURG00010019256) #30	ENSVURG00010019248	PTPRU (ENSVURG00010019212) #31	MECR (ENSVURG00010019183) #32	SRSF4 (ENSVURG00010019175) #33	TMEM200B (ENSVURG00010019172)	EPB41 (ENSVURG00010019138) #34	OPRD1 (ENSVURG00010019102) #35
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000155104.sb #22
koala	MODERN SPECIES	5								MARVELD2 (ENSPCIG00000033113)	RAD17 (ENSPCIG00000024704)	ENSPCIG00000034861	CCDC125 (ENSPCIG00000005071)	ENSPCIG00000013227	FAM151B (ENSPCIG00000013226)	ENSPCIG00000032886	ENSPCIG00000013220	ENSPCIG00000013221 #22	MSH3 (ENSPCIG00000013216)	RASGRF2 (ENSPCIG00000013213)	CKMT2 (ENSPCIG00000013210)	ZCCHC9 (ENSPCIG00000013208)	ACOT12 (ENSPCIG00000013207)	SSBP2 (ENSPCIG00000013205)	ATG10 (ENSPCIG00000029907)	ENSPCIG00000029909	RPS23 (ENSPCIG00000029904)	ENSPCIG00000029902	ENSPCIG00000029901	ENSPCIG00000029899	ENSPCIG00000029898	ENSPCIG00000032700	XRCC4 (ENSPCIG00000029896)
Platypus	MODERN SPECIES	7											ENSOANG00000039990	ENSOANG00000051074	ENSOANG00000037029	SCMH1 (ENSOANG00000002846)	ENSOANG00000040254	FABP3 (ENSOANG00000045885) #22	SERINC2 (ENSOANG00000048218) #21	SNRNP40 (ENSOANG00000011686) #24	PUM1 (ENSOANG00000004902) #26	SDC3 (ENSOANG00000038243) #28	ENSOANG00000012233 #29	MATN1 (ENSOANG00000006352) #30	PTPRU (ENSOANG00000000977) #31	MECR (ENSOANG00000003563) #32	ENSOANG00000046267	SRSF4 (ENSOANG00000015169) #33	ENSOANG00000042533	EPB41 (ENSOANG00000003830) #34	ENSOANG00000003829	RPA2 (ENSOANG00000003828)	SMPDL3B (ENSOANG00000011249)