Bovidae	ANCESTRAL SPECIES	13										ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT01070000257212	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154931 #27	ENSGT00940000154519.f.a.b.a ##28	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000154150.xb.s.a ##35	ENSGT00940000175246	ENSGT00940000154150.xb.t #35	ENSGT00390000011804 #36	ENSGT00940000157354 #37
Bovinae	ANCESTRAL SPECIES	9										ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT01070000257212	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154931 #27	ENSGT00940000154519.e.a #28	ENSGT00940000154519.e.b.b.a #29	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000154150.xb.t #35	ENSGT00390000011804 #36	ENSGT00940000157354 #37	ENSGT00390000009209
Bos	ANCESTRAL SPECIES	37										ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT01070000257212	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154931 #27	ENSGT00940000154519.e.a.a #28	ENSGT00940000154519.e.b.b.a.c #29	ENSGT00940000154519.e.b.b.b.a #30	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000154150.xb.t #35	ENSGT00390000011804 #36	ENSGT00940000157354 #37
Bos_a	ANCESTRAL SPECIES	49											ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154931 #27	ENSGT00940000154519.e.a.a #28	ENSGT00940000154519.e.b.b.a.c #29	ENSGT00940000154519.e.b.b.b.a #30	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000154150.xb.t #35	ENSGT00940000154150.xb.s.b ##35	ENSGT00390000011804 #36
Domestic yak	MODERN SPECIES	16										ENSBGRG00000012625 #16	IRF4 (ENSBGRG00000012510) #17	EXOC2 (ENSBGRG00000011992) #18	ENSBGRG00000011911 #19	ENSBGRG00000011879 #20	FOXF2 (ENSBGRG00000011788) #21	FOXC1 (ENSBGRG00000011734) #22	GMDS (ENSBGRG00000011025) #23	MYLK4 (ENSBGRG00000010518) #24	WRNIP1 (ENSBGRG00000010299) #25	SERPINB1 (ENSBGRG00000010205) #26	SERPINB9 (ENSBGRG00000010171) #27	ENSBGRG00000010125 #28	ENSBGRG00000009409 #29	ENSBGRG00000009283 #30	ENSBGRG00000009235 #31	NQO2 (ENSBGRG00000009131) #32	RIPK1 (ENSBGRG00000009042) #33	BPHL (ENSBGRG00000008956) #34	TUBB2A (ENSBGRG00000008862) #35	ENSBGRG00000008779 #36	SLC22A23 (ENSBGRG00000008663) #37
Bos_b	ANCESTRAL SPECIES	8										ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT01070000257212	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154931 #27	ENSGT00940000154519.e.a.b ##28	ENSGT00940000154519.e.a.a #28	ENSGT00940000154519.e.b.b.a.c #29	ENSGT00940000154519.e.b.b.b.a #30	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000154150.xb.t #35	ENSGT00390000011804 #36
Cow	MODERN SPECIES	15										DUSP22 (ENSBTAG00000027375) #16	IRF4 (ENSBTAG00000002929) #17	EXOC2 (ENSBTAG00000020215) #18	ENSBTAG00000051218	FOXQ1 (ENSBTAG00000052132) #20	FOXF2 (ENSBTAG00000026896) #21	ENSBTAG00000050875 #22	GMDS (ENSBTAG00000012058) #23	MYLK4 (ENSBTAG00000012079) #24	WRNIP1 (ENSBTAG00000006166) #25	SERPINB1 (ENSBTAG00000011975) #26	SERPINB9 (ENSBTAG00000031267) #27	ENSBTAG00000053511 ##28	SERPINB6 (ENSBTAG00000050155) #28	ENSBTAG00000054098 #29	ENSBTAG00000053741 #30	ENSBTAG00000049906 #31	NQO2 (ENSBTAG00000000786) #32	ENSBTAG00000051842	RIPK1 (ENSBTAG00000006378) #33	BPHL (ENSBTAG00000006379) #34	TUBB2A (ENSBTAG00000048485) #35
American bison	MODERN SPECIES	3235												ENSBBBG00000008241 #16	ENSBBBG00000006637 #16	IRF4 (ENSBBBG00000025076) #17	EXOC2 (ENSBBBG00000025059) #18	ENSBBBG00000006603 #22	GMDS (ENSBBBG00000024989) #23	MYLK4 (ENSBBBG00000024933) #24	ENSBBBG00000024867 #25	SERPINB1 (ENSBBBG00000007815) #26	SERPINB9 (ENSBBBG00000006536) #27	ENSBBBG00000024820 #28
Caprinae	ANCESTRAL SPECIES	41											ENSGT00940000157153 #16	ENSGT00940000159059 #17	ENSGT00390000010872 #18	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT00940000154573 #26	ENSGT00940000154519.f.a.b.a ##28	ENSGT00940000154519.f.a.a.a.a.a ##28	ENSGT00940000154931 #27	ENSGT00940000154519.f.a.a.a.b ##28	ENSGT00940000154519.e.b.a #31	ENSGT00940000156563 #32	ENSGT00940000159347 #33	ENSGT00390000004746 #34	ENSGT00940000175246	ENSGT00940000154150.xb.t #35	ENSGT00390000011804 #36
Rambouillet Sheep	MODERN SPECIES	12												DUSP22 (ENSOARG00020010129) #16	IRF4 (ENSOARG00020010003) #17	EXOC2 (ENSOARG00020009424) #18	FOXF2 (ENSOARG00020009297) #21	ENSOARG00020009253 #22	GMDS (ENSOARG00020009159) #23	ENSOARG00020009120	ENSOARG00020008839 #24	WRNIP1 (ENSOARG00020008718) #25	SERPINB1 (ENSOARG00020008679) #26	ENSOARG00020008634 ##28	SERPINB9 (ENSOARG00020008599) #27	ENSOARG00020008440 ##28	ENSOARG00020008345 ##28	ENSOARG00020008292	ENSOARG00020007031 ##28	ENSOARG00020006863 #31	ENSOARG00020006784 #32	RIPK1 (ENSOARG00020006711) #33	RIPK1 (ENSOARG00020006661) #34
Goat	MODERN SPECIES	15											DUSP22 (ENSCHIG00000013023) #16	IRF4 (ENSCHIG00000017135) #17	EXOC2 (ENSCHIG00000013305) #18	FOXQ1 (ENSCHIG00000002934) #20	FOXF2 (ENSCHIG00000020355) #21	FOXC1 (ENSCHIG00000007582) #22	GMDS (ENSCHIG00000017697) #23	MYLK4 (ENSCHIG00000008115) #24	WRNIP1 (ENSCHIG00000014698) #25	SERPINB1 (ENSCHIG00000018405) #26	SERPINB9 (ENSCHIG00000016184) #27	ENSCHIG00000026893 ##28	ENSCHIG00000014629 ##28	LY86 (ENSCHIG00000000721)	RREB1 (ENSCHIG00000008467)	ENSCHIG00000012601	SSR1 (ENSCHIG00000021769)	CAGE1 (ENSCHIG00000021103)	RIOK1 (ENSCHIG00000001534)	DSP (ENSCHIG00000013613)	SNRNP48 (ENSCHIG00000015216)