Rodentia_A	ANCESTRAL SPECIES	26											ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT01000000215059 #26	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.d #30	ENSGT00940000154931.c.a.b ##30	ENSGT00940000154519.g.b #32	ENSGT00940000156563 #33	ENSGT00940000159347 #34	ENSGT00390000004746 #35	ENSGT00940000154150 #37	ENSGT00390000011804	ENSGT00940000157354	ENSGT00390000009209
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000163682	ENSGT00940000163314	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000163102	ENSGT00940000159644	ENSGT00940000163521	ENSGT00940000161576	ENSGT00940000163165	ENSGT00940000163486	ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00390000012138.a.b.t.ab #24	ENSGT00940000156211.b #25	ENSGT01000000215059 #26	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.d #30	ENSGT00940000154931.c.a.b ##30	ENSGT00940000154519.g.b #32	ENSGT00940000156563 #33	ENSGT00940000159347 #34	ENSGT00390000004746 #35	ENSGT00940000154150 #37	ENSGT00390000011804	ENSGT00940000157354
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005014208 #7	ENSSVLG00005014265 #8	ENSSVLG00005014308 #9	ENSSVLG00005014343 #10	ENSSVLG00005014389 #11	ENSSVLG00005014442 #12	ENSSVLG00005014463 #13	IRF4 (ENSSVLG00005014508) #14	EXOC2 (ENSSVLG00005014600) #15	HUS1B (ENSSVLG00005014653) #16	ENSSVLG00005014684 #17	ENSSVLG00005014698 #18	ENSSVLG00005014724 #19	FOXQ1 (ENSSVLG00005014773) #20	FOXF2 (ENSSVLG00005014790) #21	FOXC1 (ENSSVLG00005014837) #22	GMDS (ENSSVLG00005014861) #23	ENSSVLG00005006132 #24	MYLK4 (ENSSVLG00005006200) #25	ENSSVLG00005006323 #26	WRNIP1 (ENSSVLG00005006348) #27	SERPINB1 (ENSSVLG00005006417) #28	ENSSVLG00005006449 #29	ENSSVLG00005006719 #30	ENSSVLG00005007366 #31	SERPINB6 (ENSSVLG00005007395) #32	NQO2 (ENSSVLG00005007475) #33	RIPK1 (ENSSVLG00005007529) #34	ENSSVLG00005007569 #35	TUBB2A (ENSSVLG00005007615) #36	TUBB2B (ENSSVLG00005007652) #37
Marmotini	ANCESTRAL SPECIES	121											ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT01000000215059 #26	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.c.b ##30
Marmotini_b	ANCESTRAL SPECIES	234											ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT01000000215059 #26	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.c.b ##30
Arctic ground squirrel	MODERN SPECIES	204							ENSUPAG00010005126	ENSUPAG00010005065 #32	ENSUPAG00010004463	DUSP22 (ENSUPAG00010004416) #13	IRF4 (ENSUPAG00010004398) #14	ENSUPAG00010004391 #16	EXOC2 (ENSUPAG00010004362) #15	FOXQ1 (ENSUPAG00010004342) #20	FOXF2 (ENSUPAG00010004332) #21	FOXC1 (ENSUPAG00010004330) #22	GMDS (ENSUPAG00010004323) #23	MYLK4 (ENSUPAG00010004253) #25	ENSUPAG00010004244 #26	WRNIP1 (ENSUPAG00010004233) #27	SERPINB1 (ENSUPAG00010004225) #28
Hystricomorpha	ANCESTRAL SPECIES	42	ENSGT00940000163016	ENSGT00940000162298	ENSGT00940000163102	ENSGT00940000159644.x	ENSGT00940000163521	ENSGT00940000161576	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b	ENSGT00940000164849	ENSGT00940000160281	ENSGT00940000153125.B	ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT01000000215059 #26	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.d #30	ENSGT00940000154519.g.b #32	ENSGT00940000156563 #33	ENSGT00940000159347 #34	ENSGT00390000004746 #35	ENSGT00940000154150 #37	ENSGT00390000011804	ENSGT00940000157354	ENSGT00390000009209	ENSGT00390000004735.B.b
Hystricomorpha_a	ANCESTRAL SPECIES	48	ENSGT00940000162298	ENSGT00940000163102	ENSGT00940000159644.w	ENSGT00940000163521	ENSGT00940000161576	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b	ENSGT00940000164849	ENSGT00940000160281	ENSGT00940000153125.C	ENSGT01100000263506.a.e.a.a.a.a.b.b	ENSGT01100000263474.a.b.b.f	ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.d #30	ENSGT00940000154519.g.b #32	ENSGT00940000156563 #33	ENSGT00940000159347 #34	ENSGT00390000004746 #35	ENSGT00940000154150 #37	ENSGT00390000011804	ENSGT00940000157354	ENSGT00390000009209	ENSGT00390000004735.B.b	ENSGT00940000155562
Hystricomorpha_b	ANCESTRAL SPECIES	58												ENSGT00940000157153 #13	ENSGT00940000159059 #14	ENSGT00390000010872 #15	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #25	ENSGT00390000008538 #27	ENSGT00940000154573 #28	ENSGT00940000154931.d #30	ENSGT00940000154519.g.b #32	ENSGT00940000156563 #33	ENSGT00940000159347 #34	ENSGT00390000004746 #35	ENSGT00940000154150 #37	ENSGT00390000011804	ENSGT00940000157354	ENSGT00390000009209	ENSGT00940000155562	ENSGT00940000154543.b
Degu	MODERN SPECIES	64	ENSODEG00000019469	ENSODEG00000019426	ZNF184 (ENSODEG00000008565)	PRSS16 (ENSODEG00000007095)	ENSODEG00000019617	ENSODEG00000019561	ENSODEG00000019618	ENSODEG00000006799	ENSODEG00000006390	ENSODEG00000007570	DUSP22 (ENSODEG00000006703) #13	IRF4 (ENSODEG00000007674) #14	ENSODEG00000019672	EXOC2 (ENSODEG00000006797) #15	FOXF2 (ENSODEG00000007607) #21	FOXC1 (ENSODEG00000006912) #22	ENSODEG00000007557	GMDS (ENSODEG00000009960) #23	MYLK4 (ENSODEG00000006897) #25	WRNIP1 (ENSODEG00000006805) #27	SERPINB1 (ENSODEG00000010241) #28	ENSODEG00000006906 #30	ENSODEG00000006648	ENSODEG00000006244 #30	SERPINB6 (ENSODEG00000008291) #32	NQO2 (ENSODEG00000006400) #33	RIPK1 (ENSODEG00000007668) #34	BPHL (ENSODEG00000008397) #35	TUBB2A (ENSODEG00000006689) #37	ENSODEG00000006037	ENSODEG00000006987 #37
Naked mole-rat female	MODERN SPECIES	28			ENSHGLG00000011763	ENSHGLG00000040689	ENSHGLG00000034563	ENSHGLG00000039066	ENSHGLG00000046877	HIST1H4I (ENSHGLG00000036883)	ENSHGLG00000033476	ENSHGLG00000008379 #13	IRF4 (ENSHGLG00000008061) #14	EXOC2 (ENSHGLG00000008005) #15	ENSHGLG00000044630	FOXQ1 (ENSHGLG00000007951) #20	FOXF2 (ENSHGLG00000007914) #21	FOXC1 (ENSHGLG00000040750) #22	GMDS (ENSHGLG00000014454) #23	ENSHGLG00000033368	ENSHGLG00000014288 #25	ENSHGLG00000040911 #26	WRNIP1 (ENSHGLG00000014216) #27	SERPINB1 (ENSHGLG00000032738) #28	ENSHGLG00000017487 #30	SERPINB6 (ENSHGLG00000015274) #32	ENSHGLG00000045779 #33	RIPK1 (ENSHGLG00000008330) #34	BPHL (ENSHGLG00000008018) #35	ENSHGLG00000043950 #37	TUBB2B (ENSHGLG00000007696) #37	ENSHGLG00000007366	SLC22A23 (ENSHGLG00000007033)