Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931 #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Glires ANCESTRAL SPECIES 5 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931 #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Rodentia ANCESTRAL SPECIES 6 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Rodentia_A ANCESTRAL SPECIES 26 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154931.c.a.b ##30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Sciuridae ANCESTRAL SPECIES 1 ENSGT00940000163682 ENSGT00940000163314 ENSGT00940000163016 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644 ENSGT00940000163521 ENSGT00940000161576 ENSGT00940000163165 ENSGT00940000163486 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00390000012138.a.b.t.ab #24 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154931.c.a.b ##30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 Eurasian red squirrel MODERN SPECIES 16 ENSSVLG00005014208 #7 ENSSVLG00005014265 #8 ENSSVLG00005014308 #9 ENSSVLG00005014343 #10 ENSSVLG00005014389 #11 ENSSVLG00005014442 #12 ENSSVLG00005014463 #13 IRF4 (ENSSVLG00005014508) #14 EXOC2 (ENSSVLG00005014600) #15 HUS1B (ENSSVLG00005014653) #16 ENSSVLG00005014684 #17 ENSSVLG00005014698 #18 ENSSVLG00005014724 #19 FOXQ1 (ENSSVLG00005014773) #20 FOXF2 (ENSSVLG00005014790) #21 FOXC1 (ENSSVLG00005014837) #22 GMDS (ENSSVLG00005014861) #23 ENSSVLG00005006132 #24 MYLK4 (ENSSVLG00005006200) #25 ENSSVLG00005006323 #26 WRNIP1 (ENSSVLG00005006348) #27 SERPINB1 (ENSSVLG00005006417) #28 ENSSVLG00005006449 #29 ENSSVLG00005006719 #30 ENSSVLG00005007366 #31 SERPINB6 (ENSSVLG00005007395) #32 NQO2 (ENSSVLG00005007475) #33 RIPK1 (ENSSVLG00005007529) #34 ENSSVLG00005007569 #35 TUBB2A (ENSSVLG00005007615) #36 TUBB2B (ENSSVLG00005007652) #37 Marmotini ANCESTRAL SPECIES 121 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.c.b ##30 Marmotini_b ANCESTRAL SPECIES 234 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.c.b ##30 Arctic ground squirrel MODERN SPECIES 204 ENSUPAG00010005126 ENSUPAG00010005065 #32 ENSUPAG00010004463 DUSP22 (ENSUPAG00010004416) #13 IRF4 (ENSUPAG00010004398) #14 ENSUPAG00010004391 #16 EXOC2 (ENSUPAG00010004362) #15 FOXQ1 (ENSUPAG00010004342) #20 FOXF2 (ENSUPAG00010004332) #21 FOXC1 (ENSUPAG00010004330) #22 GMDS (ENSUPAG00010004323) #23 MYLK4 (ENSUPAG00010004253) #25 ENSUPAG00010004244 #26 WRNIP1 (ENSUPAG00010004233) #27 SERPINB1 (ENSUPAG00010004225) #28 Hystricomorpha ANCESTRAL SPECIES 42 ENSGT00940000163016 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644.x ENSGT00940000163521 ENSGT00940000161576 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT00940000164849 ENSGT00940000160281 ENSGT00940000153125.B ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00390000004735.B.b Hystricomorpha_a ANCESTRAL SPECIES 48 ENSGT00940000162298 ENSGT00940000163102 ENSGT00940000159644.w ENSGT00940000163521 ENSGT00940000161576 ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.b.b ENSGT00940000164849 ENSGT00940000160281 ENSGT00940000153125.C ENSGT01100000263506.a.e.a.a.a.a.b.b ENSGT01100000263474.a.b.b.f ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00390000004735.B.b ENSGT00940000155562 Hystricomorpha_b ANCESTRAL SPECIES 58 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 ENSGT00940000155562 ENSGT00940000154543.b Degu MODERN SPECIES 64 ENSODEG00000019469 ENSODEG00000019426 ZNF184 (ENSODEG00000008565) PRSS16 (ENSODEG00000007095) ENSODEG00000019617 ENSODEG00000019561 ENSODEG00000019618 ENSODEG00000006799 ENSODEG00000006390 ENSODEG00000007570 DUSP22 (ENSODEG00000006703) #13 IRF4 (ENSODEG00000007674) #14 ENSODEG00000019672 EXOC2 (ENSODEG00000006797) #15 FOXF2 (ENSODEG00000007607) #21 FOXC1 (ENSODEG00000006912) #22 ENSODEG00000007557 GMDS (ENSODEG00000009960) #23 MYLK4 (ENSODEG00000006897) #25 WRNIP1 (ENSODEG00000006805) #27 SERPINB1 (ENSODEG00000010241) #28 ENSODEG00000006906 #30 ENSODEG00000006648 ENSODEG00000006244 #30 SERPINB6 (ENSODEG00000008291) #32 NQO2 (ENSODEG00000006400) #33 RIPK1 (ENSODEG00000007668) #34 BPHL (ENSODEG00000008397) #35 TUBB2A (ENSODEG00000006689) #37 ENSODEG00000006037 ENSODEG00000006987 #37 Naked mole-rat female MODERN SPECIES 28 ENSHGLG00000011763 ENSHGLG00000040689 ENSHGLG00000034563 ENSHGLG00000039066 ENSHGLG00000046877 HIST1H4I (ENSHGLG00000036883) ENSHGLG00000033476 ENSHGLG00000008379 #13 IRF4 (ENSHGLG00000008061) #14 EXOC2 (ENSHGLG00000008005) #15 ENSHGLG00000044630 FOXQ1 (ENSHGLG00000007951) #20 FOXF2 (ENSHGLG00000007914) #21 FOXC1 (ENSHGLG00000040750) #22 GMDS (ENSHGLG00000014454) #23 ENSHGLG00000033368 ENSHGLG00000014288 #25 ENSHGLG00000040911 #26 WRNIP1 (ENSHGLG00000014216) #27 SERPINB1 (ENSHGLG00000032738) #28 ENSHGLG00000017487 #30 SERPINB6 (ENSHGLG00000015274) #32 ENSHGLG00000045779 #33 RIPK1 (ENSHGLG00000008330) #34 BPHL (ENSHGLG00000008018) #35 ENSHGLG00000043950 #37 TUBB2B (ENSHGLG00000007696) #37 ENSHGLG00000007366 SLC22A23 (ENSHGLG00000007033) Rodentia_B ANCESTRAL SPECIES 8 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Kangaroo rat MODERN SPECIES 351 Dusp22 (ENSDORG00000007227) #13 Irf4 (ENSDORG00000014895) #14 Exoc2 (ENSDORG00000008782) #15 Foxf2 (ENSDORG00000001552) #21 Foxc1 (ENSDORG00000006796) #22 Gmds (ENSDORG00000006797) #23 Mylk4 (ENSDORG00000000510) #25 Wrnip1 (ENSDORG00000003946) #27 ENSDORG00000003777 #28 ENSDORG00000026119 #28 ENSDORG00000027278 #30 ENSDORG00000001371 Nqo2 (ENSDORG00000010390) #33 Ripk1 (ENSDORG00000010392) #34 ENSDORG00000029944 ENSDORG00000011196 ENSDORG00000028660 Cdyl (ENSDORG00000002812) ENSDORG00000023689 ENSDORG00000004072 Myomorpha ANCESTRAL SPECIES 11 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Lesser Egyptian jerboa MODERN SPECIES 129 Dusp22 (ENSJJAG00000019867) #13 Irf4 (ENSJJAG00000019182) #14 ENSJJAG00000017878 #15 Foxf2 (ENSJJAG00000017530) #21 ENSJJAG00000015833 #22 Gmds (ENSJJAG00000015490) #23 ENSJJAG00000013456 #25 Wrnip1 (ENSJJAG00000011299) #27 ENSJJAG00000010900 #28 ENSJJAG00000017382 #30 ENSJJAG00000015735 #32 Nqo2 (ENSJJAG00000015012) #33 Ripk1 (ENSJJAG00000013771) #34 Bphl (ENSJJAG00000012949) #35 Tubb2b (ENSJJAG00000011739) #37 Psmg4 (ENSJJAG00000011408) Slc22a23 (ENSJJAG00000005711) Pxdc1 (ENSJJAG00000012785) Prpf4b (ENSJJAG00000011217) ENSJJAG00000010338 Muroidea ANCESTRAL SPECIES 15 ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT01000000215059 #26 ENSGT00390000008538 #27 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 ENSGT00390000009209 Upper Galilee mountains blind mole rat MODERN SPECIES 960 Agtr1a (ENSNGAG00000001950) Uqcrfs1 (ENSNGAG00000001109) Dusp22 (ENSNGAG00000021364) #13 Irf4 (ENSNGAG00000020771) #14 ENSNGAG00000019248 #15 ENSNGAG00000017632 Foxq1 (ENSNGAG00000011384) #20 Foxf2 (ENSNGAG00000011181) #21 ENSNGAG00000007865 #22 Gmds (ENSNGAG00000021851) #23 Mylk4 (ENSNGAG00000016589) #25 Wrnip1 (ENSNGAG00000022017) #27 ENSNGAG00000007869 #28 ENSNGAG00000020541 #30 ENSNGAG00000018961 #32 Muroidea_A ANCESTRAL SPECIES 14 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b.a #32 ENSGT00940000154519.g.b.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 Cricetidae ANCESTRAL SPECIES 22 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b.a.c.b #32 ENSGT00940000154519.g.b.a.d #32 ENSGT00940000154519.g.b.a.c.a #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 Cricetinae ANCESTRAL SPECIES 20 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573 #28 ENSGT00940000154931.d.j #30 ENSGT00940000154519.g.b.a.c.b #32 ENSGT00940000154931.d.i #30 ENSGT00940000154519.g.b.a.c.a #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 Golden Hamster MODERN SPECIES 623 Prl5a1 (ENSMAUG00000018024) Sox4 (ENSMAUG00000001434) Cdkal1 (ENSMAUG00000020796) E2f3 (ENSMAUG00000019714) ENSMAUG00000018470 Mboat1 (ENSMAUG00000017913) Agtr1a (ENSMAUG00000017279) Uqcrfs1 (ENSMAUG00000016767) Dusp22 (ENSMAUG00000016397) #13 Irf4 (ENSMAUG00000015575) #14 Exoc2 (ENSMAUG00000015195) #15 ENSMAUG00000014057 ENSMAUG00000013208 Foxq1 (ENSMAUG00000018519) #20 Foxf2 (ENSMAUG00000012470) #21 Foxc1 (ENSMAUG00000018460) #22 Gmds (ENSMAUG00000011976) #23 Mylk4 (ENSMAUG00000011053) #25 Wrnip1 (ENSMAUG00000009914) #27 ENSMAUG00000009659 #28 ENSMAUG00000009345 #30 ENSMAUG00000009098 #32 ENSMAUG00000008075 #30 ENSMAUG00000001439 #30 ENSMAUG00000001093 #32 Nqo2 (ENSMAUG00000000875) #33 Ripk1 (ENSMAUG00000000557) #34 Bphl (ENSMAUG00000000408) #35 Tubb2a (ENSMAUG00000018540) #37 ENSMAUG00000018054 #37 Psmg4 (ENSMAUG00000017755) Chinese hamster chok1gshd MODERN SPECIES 317 ENSCGRG00001000972 Prl4a1 (ENSCGRG00001018885) Prl5a1 (ENSCGRG00001023618) Sox4 (ENSCGRG00001004088) Cdkal1 (ENSCGRG00001010740) E2f3 (ENSCGRG00001024916) Mboat1 (ENSCGRG00001025065) Agtr1a (ENSCGRG00001009515) Uqcrfs1 (ENSCGRG00001008222) Dusp22 (ENSCGRG00001010384) #13 Irf4 (ENSCGRG00001016836) #14 Exoc2 (ENSCGRG00001019674) #15 ENSCGRG00001013162 Foxq1 (ENSCGRG00001006043) #20 Foxf2 (ENSCGRG00001022972) #21 Foxc1 (ENSCGRG00001005886) #22 Gmds (ENSCGRG00001014163) #23 ENSCGRG00001020761 Mylk4 (ENSCGRG00001012998) #25 Wrnip1 (ENSCGRG00001020075) #27 ENSCGRG00001007544 #26 ENSCGRG00001000139 #28 ENSCGRG00001009851 ENSCGRG00001014514 #30 ENSCGRG00001021359 ENSCGRG00001022043 #30 ENSCGRG00001020665 #32 ENSCGRG00001015437 #32 Nqo2 (ENSCGRG00001004425) #33 Ripk1 (ENSCGRG00001014419) #34 Bphl (ENSCGRG00001014124) #35 Cricetidae_B ANCESTRAL SPECIES 22 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573 #28 ENSGT00940000154931.d #30 ENSGT00940000154519.g.b.a.d #32 ENSGT00940000154519.g.b.a.c.a #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000175246 ENSGT00940000154150 #37 ENSGT00390000011804 ENSGT00940000157354 Prairie vole MODERN SPECIES 3 Sox4 (ENSMOCG00000004505) ENSMOCG00000002429 Cdkal1 (ENSMOCG00000022160) E2f3 (ENSMOCG00000022923) Mboat1 (ENSMOCG00000004726) ENSMOCG00000019499 Uqcrfs1 (ENSMOCG00000014738) ENSMOCG00000007870 #13 Irf4 (ENSMOCG00000017633) #14 Exoc2 (ENSMOCG00000022998) #15 Hus1b (ENSMOCG00000002316) #16 ENSMOCG00000000826 Foxq1 (ENSMOCG00000005340) #20 Foxf2 (ENSMOCG00000010276) #21 ENSMOCG00000002929 Foxc1 (ENSMOCG00000006436) #22 Gmds (ENSMOCG00000018203) #23 Mylk4 (ENSMOCG00000014428) #25 ENSMOCG00000019965 Wrnip1 (ENSMOCG00000002819) #27 ENSMOCG00000021377 #28 ENSMOCG00000000987 #30 ENSMOCG00000016281 #32 ENSMOCG00000010614 #30 ENSMOCG00000004352 #30 ENSMOCG00000011182 #32 ENSMOCG00000019022 ENSMOCG00000016676 #32 ENSMOCG00000000484 #32 Nqo2 (ENSMOCG00000007454) #33 Ripk1 (ENSMOCG00000002677) #34 Northern American deer mouse MODERN SPECIES 18 Prl5a1 (ENSPEMG00000022650) ENSPEMG00000026740 Sox4 (ENSPEMG00000013688) Cdkal1 (ENSPEMG00000009808) E2f3 (ENSPEMG00000011070) Mboat1 (ENSPEMG00000028788) Agtr1a (ENSPEMG00000029887) Uqcrfs1 (ENSPEMG00000012221) Dusp22 (ENSPEMG00000012769) #13 Irf4 (ENSPEMG00000012922) #14 Exoc2 (ENSPEMG00000014307) #15 Hus1b (ENSPEMG00000013275) #16 ENSPEMG00000023016 Foxq1 (ENSPEMG00000029927) #20 Foxf2 (ENSPEMG00000017102) #21 Foxc1 (ENSPEMG00000025795) #22 Gmds (ENSPEMG00000018701) #23 ENSPEMG00000000084 #25 Wrnip1 (ENSPEMG00000000543) #27 ENSPEMG00000030799 #26 ENSPEMG00000003771 #28 ENSPEMG00000024282 #30 ENSPEMG00000007226 #32 ENSPEMG00000007216 #30 ENSPEMG00000025946 #30 ENSPEMG00000029739 #32 ENSPEMG00000011189 #30 ENSPEMG00000006842 #32 ENSPEMG00000030940 #32 Nqo2 (ENSPEMG00000022103) #33 Ripk1 (ENSPEMG00000014892) #34 Murinae ANCESTRAL SPECIES 21 ENSGT00950000182818.A.f.b.a.b.b ENSGT00950000182818.A.f.b.a.b.a ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573.k.a #28 ENSGT00940000154573.l #28 ENSGT00940000154519.g.b.a.b #32 ENSGT00940000154931.d.o.a.a #30 ENSGT00940000154931.d.o.a.b #30 ENSGT00940000154573.k.b #28 ENSGT00940000154519.g.b.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 ENSGT00390000004746 #35 ENSGT00940000154150 #37 Mus ANCESTRAL SPECIES 18 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573.k.a #28 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.o.a.b #30 ENSGT00940000154519.g.b.a.b #32 ENSGT00940000154931.d.o.a.a #30 ENSGT00940000154931.d.p #30 ENSGT00940000154931.d.o.b #30 ENSGT00940000154519.g.b.a.a.a.b.a #32 ENSGT00940000154519.g.b.a.a.b.a #32 ENSGT00940000154519.g.b.a.a.a.a #32 ENSGT00940000154519.g.b.b #32 Mus_A ANCESTRAL SPECIES 14 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573.k.a #28 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.o.a.b #30 ENSGT00940000154573.l #28 ENSGT00940000154519.g.b.a.b #32 ENSGT00940000154931.d.o.a.a #30 ENSGT00940000154519.g.a ##32 ENSGT00940000154519.g.b.a.a.a.a #32 ENSGT00940000154519.g.b.b #32 ENSGT00940000156563 #33 ENSGT00940000159347 #34 Mus_B ANCESTRAL SPECIES 13 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573.k.a #28 ENSGT00940000154573.l #28 ENSGT00940000154519.g.b.a.b #32 ENSGT00940000154931.d.o.a.a #30 ENSGT00940000154931.d.o.a.b #30 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.p #30 ENSGT00940000154931.d.o.b.b #30 ENSGT00940000154931.d.o.b.a.a #30 ENSGT00940000154519.g.b.a.a.a.b.a #32 ENSGT00940000154519.g.b.a.a.b.a #32 Mus_C ANCESTRAL SPECIES 10 ENSGT00950000182818.A.f.b.b.b ENSGT00950000182818.A.f.b.a.b.b ENSGT00940000161470 ENSGT00940000155952 ENSGT00940000155115.a.a ENSGT01030000234564.a.a.a.a.a ENSGT01050000244888.b.a.c.b.g ENSGT00390000001014 ENSGT00940000157153 #13 ENSGT00940000159059 #14 ENSGT00390000010872 #15 ENSGT00860000135627 ENSGT00860000135685 ENSGT00940000162937.b #20 ENSGT00940000162527 #21 ENSGT00940000162303.b #22 ENSGT00440000033640 #23 ENSGT00940000156211.b #25 ENSGT00390000008538 #27 ENSGT01000000215059 #26 ENSGT00940000154573.k.a #28 ENSGT00940000154573.l #28 ENSGT00940000154519.g.b.a.b #32 ENSGT00940000154931.d.o.a.a #30 ENSGT00940000154931.d.o.a.b #30 ENSGT00940000154573.k.b #28 ENSGT00940000154931.d.p #30 ENSGT00940000154931.d.o.b.b #30 ENSGT00940000154931.d.o.b.a.b #30 ENSGT00940000154931.d.o.b.a.a #30 ENSGT00940000154519.g.b.a.a.a.b.a #32 Steppe mouse MODERN SPECIES 2907 Foxq1 (ENSMSIG00000012808) #20 Foxf2 (ENSMSIG00000012814) #21 Foxc1 (ENSMSIG00000012835) #22 Gmds (ENSMSIG00000012840) #23 ENSMSIG00000012867 #25 Wrnip1 (ENSMSIG00000012927) #27 ENSMSIG00000012960 #26 Serpinb1a (ENSMSIG00000012962) #28 Serpinb1c (ENSMSIG00000012970) #28 Serpinb6b (ENSMSIG00000012982) #32 Serpinb9 (ENSMSIG00000013005) #30 Serpinb9b (ENSMSIG00000013028) #30 Serpinb1b (ENSMSIG00000013045) #28 Serpinb9c (ENSMSIG00000013069) #30 Serpinb9d (ENSMSIG00000013119) #30 spretus MODERN SPECIES 4 Prl5a1 (MGP_SPRETEiJ_G0019254) Sox4 (MGP_SPRETEiJ_G0019255) Cdkal1 (MGP_SPRETEiJ_G0019256) E2f3 (MGP_SPRETEiJ_G0019257) Mboat1 (MGP_SPRETEiJ_G0019258) Agtr1a (MGP_SPRETEiJ_G0019259) Uqcrfs1 (MGP_SPRETEiJ_G0019260) Dusp22 (MGP_SPRETEiJ_G0019261) #13 Irf4 (MGP_SPRETEiJ_G0019262) #14 Exoc2 (MGP_SPRETEiJ_G0019263) #15 Hus1b (MGP_SPRETEiJ_G0019264) #16 MGP_SPRETEiJ_G0019265 MGP_SPRETEiJ_G0019266 Foxq1 (MGP_SPRETEiJ_G0019267) #20 Foxf2 (MGP_SPRETEiJ_G0019268) #21 Foxc1 (MGP_SPRETEiJ_G0019269) #22 Gmds (MGP_SPRETEiJ_G0019270) #23 MGP_SPRETEiJ_G0019271 #25 Wrnip1 (MGP_SPRETEiJ_G0019272) #27 MGP_SPRETEiJ_G0019273 #26 MGP_SPRETEiJ_G0019274 #28 MGP_SPRETEiJ_G0019275 #28 Serpinb6b (MGP_SPRETEiJ_G0019276) #32 Serpinb9 (MGP_SPRETEiJ_G0019277) #30 MGP_SPRETEiJ_G0019278 ##30 Serpinb9c (MGP_SPRETEiJ_G0019279) #30 MGP_SPRETEiJ_G0019280 #30 MGP_SPRETEiJ_G0019281 #30 MGP_SPRETEiJ_G0019282 #30 MGP_SPRETEiJ_G0019283 #30 MGP_SPRETEiJ_G0019284 #30 Mouse MODERN SPECIES 4 Prl2c1 (ENSMUSG00000062551) Prl4a1 (ENSMUSG00000005891) Prl5a1 (ENSMUSG00000017064) Sox4 (ENSMUSG00000076431) Cdkal1 (ENSMUSG00000006191) E2f3 (ENSMUSG00000016477) Mboat1 (ENSMUSG00000038732) Agtr1a (ENSMUSG00000049115) Uqcrfs1 (ENSMUSG00000038462) Dusp22 (ENSMUSG00000069255) #13 Irf4 (ENSMUSG00000021356) #14 Exoc2 (ENSMUSG00000021357) #15 Hus1b (ENSMUSG00000076430) #16 Foxq1 (ENSMUSG00000038415) #20 Foxf2 (ENSMUSG00000038402) #21 Foxc1 (ENSMUSG00000050295) #22 Gmds (ENSMUSG00000038372) #23 Mylk4 (ENSMUSG00000044951) #25 Wrnip1 (ENSMUSG00000021400) #27 Serpinb1a (ENSMUSG00000044734) #28 Serpinb1c (ENSMUSG00000079049) #28 Serpinb6b (ENSMUSG00000042842) #32 Serpinb9 (ENSMUSG00000045827) #30 Serpinb9b (ENSMUSG00000021403) #30 Serpinb1b (ENSMUSG00000051029) #28 Serpinb9c (ENSMUSG00000021404) #30 Serpinb9d (ENSMUSG00000054266) #30 Serpinb9e (ENSMUSG00000062342) #30 Serpinb9f (ENSMUSG00000038327) #30 Serpinb9h (ENSMUSG00000071452) #30 Serpinb9g (ENSMUSG00000057726) #30 Ryukyu mouse MODERN SPECIES 4 Prl5a1 (MGP_CAROLIEiJ_G0018385) Sox4 (MGP_CAROLIEiJ_G0018386) Cdkal1 (MGP_CAROLIEiJ_G0018387) E2f3 (MGP_CAROLIEiJ_G0018388) Mboat1 (MGP_CAROLIEiJ_G0018389) Agtr1a (MGP_CAROLIEiJ_G0018390) Uqcrfs1 (MGP_CAROLIEiJ_G0018391) Dusp22 (MGP_CAROLIEiJ_G0018392) #13 Irf4 (MGP_CAROLIEiJ_G0018393) #14 Exoc2 (MGP_CAROLIEiJ_G0018394) #15 Hus1b (MGP_CAROLIEiJ_G0018395) #16 MGP_CAROLIEiJ_G0018396 MGP_CAROLIEiJ_G0018397 Foxq1 (MGP_CAROLIEiJ_G0018398) #20 Foxf2 (MGP_CAROLIEiJ_G0018399) #21 Foxc1 (MGP_CAROLIEiJ_G0018400) #22 Gmds (MGP_CAROLIEiJ_G0018401) #23 MGP_CAROLIEiJ_G0018402 #25 Wrnip1 (MGP_CAROLIEiJ_G0018403) #27 MGP_CAROLIEiJ_G0018404 #26 Serpinb1a (MGP_CAROLIEiJ_G0018405) #28 MGP_CAROLIEiJ_G0018406 #28 Serpinb6b (MGP_CAROLIEiJ_G0018407) #32 Serpinb9 (MGP_CAROLIEiJ_G0018408) #30 MGP_CAROLIEiJ_G0018409 #30 MGP_CAROLIEiJ_G0018410 #30 MGP_CAROLIEiJ_G0018411 #30 MGP_CAROLIEiJ_G0018412 ##32 Serpinb6c (MGP_CAROLIEiJ_G0018413) #32 Serpinb6a (MGP_CAROLIEiJ_G0018414) #32 Nqo2 (MGP_CAROLIEiJ_G0018415) #33 Shrew mouse MODERN SPECIES 7 Prl4a1 (MGP_PahariEiJ_G0019449) Prl5a1 (MGP_PahariEiJ_G0019450) Sox4 (MGP_PahariEiJ_G0019451) Cdkal1 (MGP_PahariEiJ_G0019452) E2f3 (MGP_PahariEiJ_G0019453) Mboat1 (MGP_PahariEiJ_G0019454) Agtr1a (MGP_PahariEiJ_G0019455) Uqcrfs1 (MGP_PahariEiJ_G0019456) Dusp22 (MGP_PahariEiJ_G0019457) #13 Irf4 (MGP_PahariEiJ_G0019458) #14 Exoc2 (MGP_PahariEiJ_G0019459) #15 Hus1b (MGP_PahariEiJ_G0019460) #16 MGP_PahariEiJ_G0019461 Foxq1 (MGP_PahariEiJ_G0019462) #20 Foxf2 (MGP_PahariEiJ_G0019463) #21 Foxc1 (MGP_PahariEiJ_G0019464) #22 Gmds (MGP_PahariEiJ_G0019465) #23 MGP_PahariEiJ_G0019466 #25 Wrnip1 (MGP_PahariEiJ_G0019467) #27 MGP_PahariEiJ_G0019468 #26 Serpinb1a (MGP_PahariEiJ_G0019469) #28 MGP_PahariEiJ_G0019470 #28 Serpinb6b (MGP_PahariEiJ_G0019471) #32 Serpinb9 (MGP_PahariEiJ_G0019472) #30 Serpinb9c (MGP_PahariEiJ_G0019473) #30 MGP_PahariEiJ_G0019474 #30 MGP_PahariEiJ_G0019475 #30 MGP_PahariEiJ_G0019476 #30 MGP_PahariEiJ_G0019477 #30 Serpinb6d (MGP_PahariEiJ_G0019478) #32 Serpinb6e (MGP_PahariEiJ_G0019479) #32 Rat MODERN SPECIES 8 Sox4 (ENSRNOG00000065643) ENSRNOG00000065771 Cdkal1 (ENSRNOG00000018381) RGD1561310 (ENSRNOG00000062739) ENSRNOG00000062512 E2f3 (ENSRNOG00000029273) Mboat1 (ENSRNOG00000027125) Agtr1a (ENSRNOG00000018346) ENSRNOG00000070855 Uqcrfs1 (ENSRNOG00000018281) Dusp22 (ENSRNOG00000056376) #13 Irf4 (ENSRNOG00000061070) #14 Exoc2 (ENSRNOG00000060266) #15 Foxq1 (ENSRNOG00000062314) #20 Foxf2 (ENSRNOG00000063796) #21 Foxc1 (ENSRNOG00000070919) #22 Gmds (ENSRNOG00000017605) #23 Mylk4 (ENSRNOG00000070083) #25 ENSRNOG00000063699 #26 Wrnip1 (ENSRNOG00000017040) #27 Serpinb1a (ENSRNOG00000016581) #28 Serpinb6b (ENSRNOG00000016420) #32 Serpinb9 (ENSRNOG00000033772) #30 RGD1562844 (ENSRNOG00000048576) #30 Serpinb1b (ENSRNOG00000034229) #28 Serpinb9d (ENSRNOG00000022139) #30 Serpinb6e (ENSRNOG00000070025) #32 RGD1564786 (ENSRNOG00000063990) #32 Nqo2 (ENSRNOG00000017820) #33 Serpinb6a (ENSRNOG00000017962) #32 Ripk1 (ENSRNOG00000017787) #34 Lagomorpha ANCESTRAL SPECIES ENSGT00940000162303.b #22 Pika MODERN SPECIES 10366 ENSOPRG00000014675 #22