Murinae	ANCESTRAL SPECIES	21	ENSGT00950000182818.A.f.b.a.b.b	ENSGT00950000182818.A.f.b.a.b.a	ENSGT00940000161470 #7	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #12	ENSGT01030000234564.a.a.a.a.a #13	ENSGT01050000244888.b.a.c.b.g #14	ENSGT00390000001014 #16	ENSGT00940000157153 #17	ENSGT00940000159059 #18	ENSGT00390000010872 #19	ENSGT00860000135627	ENSGT00860000135685	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #26	ENSGT01000000215059 #25	ENSGT00940000154573.k.a #27	ENSGT00940000154573.l ##27	ENSGT00940000154519.g.b.a.b #28	ENSGT00940000154931.d.o.a.a #29	ENSGT00940000154931.d.o.a.b #30	ENSGT00940000154573.k.b #31	ENSGT00940000154519.g.b.b #36	ENSGT00940000156563 #35	ENSGT00940000159347 #37	ENSGT00390000004746	ENSGT00940000154150
Rat	MODERN SPECIES	8	Sox4 (ENSRNOG00000065643) #7	ENSRNOG00000065771 #8	Cdkal1 (ENSRNOG00000018381) #9	RGD1561310 (ENSRNOG00000062739) #10	ENSRNOG00000062512 #11	E2f3 (ENSRNOG00000029273) #12	Mboat1 (ENSRNOG00000027125) #13	Agtr1a (ENSRNOG00000018346) #14	ENSRNOG00000070855 #15	Uqcrfs1 (ENSRNOG00000018281) #16	Dusp22 (ENSRNOG00000056376) #17	Irf4 (ENSRNOG00000061070) #18	Exoc2 (ENSRNOG00000060266) #19	Foxq1 (ENSRNOG00000062314) #20	Foxf2 (ENSRNOG00000063796) #21	Foxc1 (ENSRNOG00000070919) #22	Gmds (ENSRNOG00000017605) #23	Mylk4 (ENSRNOG00000070083) #24	ENSRNOG00000063699 #25	Wrnip1 (ENSRNOG00000017040) #26	Serpinb1a (ENSRNOG00000016581) #27	Serpinb6b (ENSRNOG00000016420) #28	Serpinb9 (ENSRNOG00000033772) #29	RGD1562844 (ENSRNOG00000048576) #30	Serpinb1b (ENSRNOG00000034229) #31	Serpinb9d (ENSRNOG00000022139) #32	Serpinb6e (ENSRNOG00000070025) #33	RGD1564786 (ENSRNOG00000063990) #34	Nqo2 (ENSRNOG00000017820) #35	Serpinb6a (ENSRNOG00000017962) #36	Ripk1 (ENSRNOG00000017787) #37
Mus	ANCESTRAL SPECIES	18	ENSGT00950000182818.A.f.b.b.b	ENSGT00950000182818.A.f.b.a.b.b	ENSGT00940000161470 #7	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #12	ENSGT01030000234564.a.a.a.a.a #13	ENSGT01050000244888.b.a.c.b.g #14	ENSGT00390000001014 #16	ENSGT00940000157153 #17	ENSGT00940000159059 #18	ENSGT00390000010872 #19	ENSGT00860000135627	ENSGT00860000135685	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #26	ENSGT01000000215059 #25	ENSGT00940000154573.k.a #27	ENSGT00940000154573.k.b #31	ENSGT00940000154931.d.o.a.b #30	ENSGT00940000154519.g.b.a.b #28	ENSGT00940000154931.d.o.a.a #29	ENSGT00940000154931.d.p ##29	ENSGT00940000154931.d.o.b #32	ENSGT00940000154519.g.b.a.a.a.b.a ##28	ENSGT00940000154519.g.b.a.a.b.a #33	ENSGT00940000154519.g.b.a.a.a.a ##28	ENSGT00940000154519.g.b.b #36
Mus_A	ANCESTRAL SPECIES	14	ENSGT00950000182818.A.f.b.b.b	ENSGT00950000182818.A.f.b.a.b.b	ENSGT00940000161470 #7	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #12	ENSGT01030000234564.a.a.a.a.a #13	ENSGT01050000244888.b.a.c.b.g #14	ENSGT00390000001014 #16	ENSGT00940000157153 #17	ENSGT00940000159059 #18	ENSGT00390000010872 #19	ENSGT00860000135627	ENSGT00860000135685	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #26	ENSGT01000000215059 #25	ENSGT00940000154573.k.a #27	ENSGT00940000154573.k.b #31	ENSGT00940000154931.d.o.a.b #30	ENSGT00940000154573.l ##27	ENSGT00940000154519.g.b.a.b #28	ENSGT00940000154931.d.o.a.a #29	ENSGT00940000154519.g.a ##28	ENSGT00940000154519.g.b.a.a.a.a ##28	ENSGT00940000154519.g.b.b #36	ENSGT00940000156563 #35	ENSGT00940000159347 #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00950000182818.A.f.b.b.b	ENSGT00950000182818.A.f.b.a.b.b	ENSGT00940000161470 #7	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #12	ENSGT01030000234564.a.a.a.a.a #13	ENSGT01050000244888.b.a.c.b.g #14	ENSGT00390000001014 #16	ENSGT00940000157153 #17	ENSGT00940000159059 #18	ENSGT00390000010872 #19	ENSGT00860000135627	ENSGT00860000135685	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #26	ENSGT01000000215059 #25	ENSGT00940000154573.k.a #27	ENSGT00940000154573.l ##27	ENSGT00940000154519.g.b.a.b #28	ENSGT00940000154931.d.o.a.a #29	ENSGT00940000154931.d.o.a.b #30	ENSGT00940000154573.k.b #31	ENSGT00940000154931.d.p ##29	ENSGT00940000154931.d.o.b.b #32	ENSGT00940000154931.d.o.b.a.a #32	ENSGT00940000154519.g.b.a.a.a.b.a ##28	ENSGT00940000154519.g.b.a.a.b.a #33
Mus_C	ANCESTRAL SPECIES	10	ENSGT00950000182818.A.f.b.b.b	ENSGT00950000182818.A.f.b.a.b.b	ENSGT00940000161470 #7	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #12	ENSGT01030000234564.a.a.a.a.a #13	ENSGT01050000244888.b.a.c.b.g #14	ENSGT00390000001014 #16	ENSGT00940000157153 #17	ENSGT00940000159059 #18	ENSGT00390000010872 #19	ENSGT00860000135627	ENSGT00860000135685	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #26	ENSGT01000000215059 #25	ENSGT00940000154573.k.a #27	ENSGT00940000154573.l ##27	ENSGT00940000154519.g.b.a.b #28	ENSGT00940000154931.d.o.a.a #29	ENSGT00940000154931.d.o.a.b #30	ENSGT00940000154573.k.b #31	ENSGT00940000154931.d.p ##29	ENSGT00940000154931.d.o.b.b #32	ENSGT00940000154931.d.o.b.a.b #32	ENSGT00940000154931.d.o.b.a.a #32	ENSGT00940000154519.g.b.a.a.a.b.a ##28
Steppe mouse	MODERN SPECIES	2907														Foxq1 (ENSMSIG00000012808) #20	Foxf2 (ENSMSIG00000012814) #21	Foxc1 (ENSMSIG00000012835) #22	Gmds (ENSMSIG00000012840) #23	ENSMSIG00000012867 #24	Wrnip1 (ENSMSIG00000012927) #26	ENSMSIG00000012960 #25	Serpinb1a (ENSMSIG00000012962) #27	Serpinb1c (ENSMSIG00000012970) ##27	Serpinb6b (ENSMSIG00000012982) #28	Serpinb9 (ENSMSIG00000013005) #29	Serpinb9b (ENSMSIG00000013028) #30	Serpinb1b (ENSMSIG00000013045) #31	Serpinb9c (ENSMSIG00000013069) ##29	Serpinb9d (ENSMSIG00000013119) #32
spretus	MODERN SPECIES	4	Prl5a1 (MGP_SPRETEiJ_G0019254)	Sox4 (MGP_SPRETEiJ_G0019255) #7	Cdkal1 (MGP_SPRETEiJ_G0019256) #9	E2f3 (MGP_SPRETEiJ_G0019257) #12	Mboat1 (MGP_SPRETEiJ_G0019258) #13	Agtr1a (MGP_SPRETEiJ_G0019259) #14	Uqcrfs1 (MGP_SPRETEiJ_G0019260) #16	Dusp22 (MGP_SPRETEiJ_G0019261) #17	Irf4 (MGP_SPRETEiJ_G0019262) #18	Exoc2 (MGP_SPRETEiJ_G0019263) #19	Hus1b (MGP_SPRETEiJ_G0019264)	MGP_SPRETEiJ_G0019265	MGP_SPRETEiJ_G0019266	Foxq1 (MGP_SPRETEiJ_G0019267) #20	Foxf2 (MGP_SPRETEiJ_G0019268) #21	Foxc1 (MGP_SPRETEiJ_G0019269) #22	Gmds (MGP_SPRETEiJ_G0019270) #23	MGP_SPRETEiJ_G0019271 #24	Wrnip1 (MGP_SPRETEiJ_G0019272) #26	MGP_SPRETEiJ_G0019273 #25	MGP_SPRETEiJ_G0019274 #27	MGP_SPRETEiJ_G0019275 ##27	Serpinb6b (MGP_SPRETEiJ_G0019276) #28	Serpinb9 (MGP_SPRETEiJ_G0019277) #29	MGP_SPRETEiJ_G0019278 ##29	Serpinb9c (MGP_SPRETEiJ_G0019279) ##29	MGP_SPRETEiJ_G0019280 #32	MGP_SPRETEiJ_G0019281 #32	MGP_SPRETEiJ_G0019282 #32	MGP_SPRETEiJ_G0019283 #32	MGP_SPRETEiJ_G0019284 #32
Mouse	MODERN SPECIES	4	Prl2c1 (ENSMUSG00000062551)	Prl4a1 (ENSMUSG00000005891)	Prl5a1 (ENSMUSG00000017064)	Sox4 (ENSMUSG00000076431) #7	Cdkal1 (ENSMUSG00000006191) #9	E2f3 (ENSMUSG00000016477) #12	Mboat1 (ENSMUSG00000038732) #13	Agtr1a (ENSMUSG00000049115) #14	Uqcrfs1 (ENSMUSG00000038462) #16	Dusp22 (ENSMUSG00000069255) #17	Irf4 (ENSMUSG00000021356) #18	Exoc2 (ENSMUSG00000021357) #19	Hus1b (ENSMUSG00000076430)	Foxq1 (ENSMUSG00000038415) #20	Foxf2 (ENSMUSG00000038402) #21	Foxc1 (ENSMUSG00000050295) #22	Gmds (ENSMUSG00000038372) #23	Mylk4 (ENSMUSG00000044951) #24	Wrnip1 (ENSMUSG00000021400) #26	Serpinb1a (ENSMUSG00000044734) #27	Serpinb1c (ENSMUSG00000079049) ##27	Serpinb6b (ENSMUSG00000042842) #28	Serpinb9 (ENSMUSG00000045827) #29	Serpinb9b (ENSMUSG00000021403) #30	Serpinb1b (ENSMUSG00000051029) #31	Serpinb9c (ENSMUSG00000021404) ##29	Serpinb9d (ENSMUSG00000054266) #32	Serpinb9e (ENSMUSG00000062342) #32	Serpinb9f (ENSMUSG00000038327) #32	Serpinb9h (ENSMUSG00000071452) #32	Serpinb9g (ENSMUSG00000057726) #32
Ryukyu mouse	MODERN SPECIES	4	Prl5a1 (MGP_CAROLIEiJ_G0018385)	Sox4 (MGP_CAROLIEiJ_G0018386) #7	Cdkal1 (MGP_CAROLIEiJ_G0018387) #9	E2f3 (MGP_CAROLIEiJ_G0018388) #12	Mboat1 (MGP_CAROLIEiJ_G0018389) #13	Agtr1a (MGP_CAROLIEiJ_G0018390) #14	Uqcrfs1 (MGP_CAROLIEiJ_G0018391) #16	Dusp22 (MGP_CAROLIEiJ_G0018392) #17	Irf4 (MGP_CAROLIEiJ_G0018393) #18	Exoc2 (MGP_CAROLIEiJ_G0018394) #19	Hus1b (MGP_CAROLIEiJ_G0018395)	MGP_CAROLIEiJ_G0018396	MGP_CAROLIEiJ_G0018397	Foxq1 (MGP_CAROLIEiJ_G0018398) #20	Foxf2 (MGP_CAROLIEiJ_G0018399) #21	Foxc1 (MGP_CAROLIEiJ_G0018400) #22	Gmds (MGP_CAROLIEiJ_G0018401) #23	MGP_CAROLIEiJ_G0018402 #24	Wrnip1 (MGP_CAROLIEiJ_G0018403) #26	MGP_CAROLIEiJ_G0018404 #25	Serpinb1a (MGP_CAROLIEiJ_G0018405) #27	MGP_CAROLIEiJ_G0018406 #31	Serpinb6b (MGP_CAROLIEiJ_G0018407) #28	Serpinb9 (MGP_CAROLIEiJ_G0018408) #29	MGP_CAROLIEiJ_G0018409 #32	MGP_CAROLIEiJ_G0018410 #32	MGP_CAROLIEiJ_G0018411 #32	MGP_CAROLIEiJ_G0018412 ##28	Serpinb6c (MGP_CAROLIEiJ_G0018413) ##28	Serpinb6a (MGP_CAROLIEiJ_G0018414) #36	Nqo2 (MGP_CAROLIEiJ_G0018415) #35
Shrew mouse	MODERN SPECIES	7	Prl4a1 (MGP_PahariEiJ_G0019449)	Prl5a1 (MGP_PahariEiJ_G0019450)	Sox4 (MGP_PahariEiJ_G0019451) #7	Cdkal1 (MGP_PahariEiJ_G0019452) #9	E2f3 (MGP_PahariEiJ_G0019453) #12	Mboat1 (MGP_PahariEiJ_G0019454) #13	Agtr1a (MGP_PahariEiJ_G0019455) #14	Uqcrfs1 (MGP_PahariEiJ_G0019456) #16	Dusp22 (MGP_PahariEiJ_G0019457) #17	Irf4 (MGP_PahariEiJ_G0019458) #18	Exoc2 (MGP_PahariEiJ_G0019459) #19	Hus1b (MGP_PahariEiJ_G0019460)	MGP_PahariEiJ_G0019461	Foxq1 (MGP_PahariEiJ_G0019462) #20	Foxf2 (MGP_PahariEiJ_G0019463) #21	Foxc1 (MGP_PahariEiJ_G0019464) #22	Gmds (MGP_PahariEiJ_G0019465) #23	MGP_PahariEiJ_G0019466 #24	Wrnip1 (MGP_PahariEiJ_G0019467) #26	MGP_PahariEiJ_G0019468 #25	Serpinb1a (MGP_PahariEiJ_G0019469) #27	MGP_PahariEiJ_G0019470 #31	Serpinb6b (MGP_PahariEiJ_G0019471) #28	Serpinb9 (MGP_PahariEiJ_G0019472) #29	Serpinb9c (MGP_PahariEiJ_G0019473) ##29	MGP_PahariEiJ_G0019474 #32	MGP_PahariEiJ_G0019475 #32	MGP_PahariEiJ_G0019476 #32	MGP_PahariEiJ_G0019477 #32	Serpinb6d (MGP_PahariEiJ_G0019478) ##28	Serpinb6e (MGP_PahariEiJ_G0019479) #33