Mus	ANCESTRAL SPECIES	18	ENSGT00950000182818.A.f.b.b.b ##7	ENSGT00950000182818.A.f.b.a.b.b #7	ENSGT00940000161470 #8	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #10	ENSGT01030000234564.a.a.a.a.a #11	ENSGT01050000244888.b.a.c.b.g #12	ENSGT00390000001014 #13	ENSGT00940000157153 #14	ENSGT00940000159059 #15	ENSGT00390000010872 #16	ENSGT00860000135627 #18	ENSGT00860000135685 #19	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT01000000215059 #26	ENSGT00940000154573.k.a #27	ENSGT00940000154573.k.b ##28	ENSGT00940000154931.d.o.a.b ##37	ENSGT00940000154519.g.b.a.b #29	ENSGT00940000154931.d.o.a.a #30	ENSGT00940000154931.d.p #32	ENSGT00940000154931.d.o.b #37	ENSGT00940000154519.g.b.a.a.a.b.a ##29	ENSGT00940000154519.g.b.a.a.b.a ##29	ENSGT00940000154519.g.b.a.a.a.a ##29	ENSGT00940000154519.g.b.b ##29
Mus_A	ANCESTRAL SPECIES	14	ENSGT00950000182818.A.f.b.b.b ##7	ENSGT00950000182818.A.f.b.a.b.b #7	ENSGT00940000161470 #8	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #10	ENSGT01030000234564.a.a.a.a.a #11	ENSGT01050000244888.b.a.c.b.g #12	ENSGT00390000001014 #13	ENSGT00940000157153 #14	ENSGT00940000159059 #15	ENSGT00390000010872 #16	ENSGT00860000135627 #18	ENSGT00860000135685 #19	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT01000000215059 #26	ENSGT00940000154573.k.a #27	ENSGT00940000154573.k.b ##28	ENSGT00940000154931.d.o.a.b ##37	ENSGT00940000154573.l #28	ENSGT00940000154519.g.b.a.b #29	ENSGT00940000154931.d.o.a.a #30	ENSGT00940000154519.g.a ##29	ENSGT00940000154519.g.b.a.a.a.a ##29	ENSGT00940000154519.g.b.b ##29	ENSGT00940000156563	ENSGT00940000159347
Mus_B	ANCESTRAL SPECIES	13	ENSGT00950000182818.A.f.b.b.b ##7	ENSGT00950000182818.A.f.b.a.b.b #7	ENSGT00940000161470 #8	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #10	ENSGT01030000234564.a.a.a.a.a #11	ENSGT01050000244888.b.a.c.b.g #12	ENSGT00390000001014 #13	ENSGT00940000157153 #14	ENSGT00940000159059 #15	ENSGT00390000010872 #16	ENSGT00860000135627 #18	ENSGT00860000135685 #19	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT01000000215059 #26	ENSGT00940000154573.k.a #27	ENSGT00940000154573.l #28	ENSGT00940000154519.g.b.a.b #29	ENSGT00940000154931.d.o.a.a #30	ENSGT00940000154931.d.o.a.b ##37	ENSGT00940000154573.k.b ##28	ENSGT00940000154931.d.p #32	ENSGT00940000154931.d.o.b.b ##37	ENSGT00940000154931.d.o.b.a.a #37	ENSGT00940000154519.g.b.a.a.a.b.a ##29	ENSGT00940000154519.g.b.a.a.b.a ##29
Mus_C	ANCESTRAL SPECIES	10	ENSGT00950000182818.A.f.b.b.b ##7	ENSGT00950000182818.A.f.b.a.b.b #7	ENSGT00940000161470 #8	ENSGT00940000155952 #9	ENSGT00940000155115.a.a #10	ENSGT01030000234564.a.a.a.a.a #11	ENSGT01050000244888.b.a.c.b.g #12	ENSGT00390000001014 #13	ENSGT00940000157153 #14	ENSGT00940000159059 #15	ENSGT00390000010872 #16	ENSGT00860000135627 #18	ENSGT00860000135685 #19	ENSGT00940000162937.b #20	ENSGT00940000162527 #21	ENSGT00940000162303.b #22	ENSGT00440000033640 #23	ENSGT00940000156211.b #24	ENSGT00390000008538 #25	ENSGT01000000215059 #26	ENSGT00940000154573.k.a #27	ENSGT00940000154573.l #28	ENSGT00940000154519.g.b.a.b #29	ENSGT00940000154931.d.o.a.a #30	ENSGT00940000154931.d.o.a.b ##37	ENSGT00940000154573.k.b ##28	ENSGT00940000154931.d.p #32	ENSGT00940000154931.d.o.b.b ##37	ENSGT00940000154931.d.o.b.a.b #36	ENSGT00940000154931.d.o.b.a.a #37	ENSGT00940000154519.g.b.a.a.a.b.a ##29
spretus	MODERN SPECIES	4	Prl5a1 (MGP_SPRETEiJ_G0019254) #7	Sox4 (MGP_SPRETEiJ_G0019255) #8	Cdkal1 (MGP_SPRETEiJ_G0019256) #9	E2f3 (MGP_SPRETEiJ_G0019257) #10	Mboat1 (MGP_SPRETEiJ_G0019258) #11	Agtr1a (MGP_SPRETEiJ_G0019259) #12	Uqcrfs1 (MGP_SPRETEiJ_G0019260) #13	Dusp22 (MGP_SPRETEiJ_G0019261) #14	Irf4 (MGP_SPRETEiJ_G0019262) #15	Exoc2 (MGP_SPRETEiJ_G0019263) #16	Hus1b (MGP_SPRETEiJ_G0019264) #17	MGP_SPRETEiJ_G0019265 #18	MGP_SPRETEiJ_G0019266 #19	Foxq1 (MGP_SPRETEiJ_G0019267) #20	Foxf2 (MGP_SPRETEiJ_G0019268) #21	Foxc1 (MGP_SPRETEiJ_G0019269) #22	Gmds (MGP_SPRETEiJ_G0019270) #23	MGP_SPRETEiJ_G0019271 #24	Wrnip1 (MGP_SPRETEiJ_G0019272) #25	MGP_SPRETEiJ_G0019273 #26	MGP_SPRETEiJ_G0019274 #27	MGP_SPRETEiJ_G0019275 #28	Serpinb6b (MGP_SPRETEiJ_G0019276) #29	Serpinb9 (MGP_SPRETEiJ_G0019277) #30	MGP_SPRETEiJ_G0019278 #31	Serpinb9c (MGP_SPRETEiJ_G0019279) #32	MGP_SPRETEiJ_G0019280 #33	MGP_SPRETEiJ_G0019281 #34	MGP_SPRETEiJ_G0019282 #35	MGP_SPRETEiJ_G0019283 #36	MGP_SPRETEiJ_G0019284 #37
Steppe mouse	MODERN SPECIES	2907														Foxq1 (ENSMSIG00000012808) #20	Foxf2 (ENSMSIG00000012814) #21	Foxc1 (ENSMSIG00000012835) #22	Gmds (ENSMSIG00000012840) #23	ENSMSIG00000012867 #24	Wrnip1 (ENSMSIG00000012927) #25	ENSMSIG00000012960 #26	Serpinb1a (ENSMSIG00000012962) #27	Serpinb1c (ENSMSIG00000012970) #28	Serpinb6b (ENSMSIG00000012982) #29	Serpinb9 (ENSMSIG00000013005) #30	Serpinb9b (ENSMSIG00000013028) ##37	Serpinb1b (ENSMSIG00000013045) ##28	Serpinb9c (ENSMSIG00000013069) #32	Serpinb9d (ENSMSIG00000013119) ##37
Mouse	MODERN SPECIES	4	Prl2c1 (ENSMUSG00000062551) ##7	Prl4a1 (ENSMUSG00000005891) ##7	Prl5a1 (ENSMUSG00000017064) #7	Sox4 (ENSMUSG00000076431) #8	Cdkal1 (ENSMUSG00000006191) #9	E2f3 (ENSMUSG00000016477) #10	Mboat1 (ENSMUSG00000038732) #11	Agtr1a (ENSMUSG00000049115) #12	Uqcrfs1 (ENSMUSG00000038462) #13	Dusp22 (ENSMUSG00000069255) #14	Irf4 (ENSMUSG00000021356) #15	Exoc2 (ENSMUSG00000021357) #16	Hus1b (ENSMUSG00000076430) #17	Foxq1 (ENSMUSG00000038415) #20	Foxf2 (ENSMUSG00000038402) #21	Foxc1 (ENSMUSG00000050295) #22	Gmds (ENSMUSG00000038372) #23	Mylk4 (ENSMUSG00000044951) #24	Wrnip1 (ENSMUSG00000021400) #25	Serpinb1a (ENSMUSG00000044734) #27	Serpinb1c (ENSMUSG00000079049) #28	Serpinb6b (ENSMUSG00000042842) #29	Serpinb9 (ENSMUSG00000045827) #30	Serpinb9b (ENSMUSG00000021403) ##37	Serpinb1b (ENSMUSG00000051029) ##28	Serpinb9c (ENSMUSG00000021404) #32	Serpinb9d (ENSMUSG00000054266) ##37	Serpinb9e (ENSMUSG00000062342) #36	Serpinb9f (ENSMUSG00000038327) #37	Serpinb9h (ENSMUSG00000071452) #37	Serpinb9g (ENSMUSG00000057726) #37
Ryukyu mouse	MODERN SPECIES	4	Prl5a1 (MGP_CAROLIEiJ_G0018385) #7	Sox4 (MGP_CAROLIEiJ_G0018386) #8	Cdkal1 (MGP_CAROLIEiJ_G0018387) #9	E2f3 (MGP_CAROLIEiJ_G0018388) #10	Mboat1 (MGP_CAROLIEiJ_G0018389) #11	Agtr1a (MGP_CAROLIEiJ_G0018390) #12	Uqcrfs1 (MGP_CAROLIEiJ_G0018391) #13	Dusp22 (MGP_CAROLIEiJ_G0018392) #14	Irf4 (MGP_CAROLIEiJ_G0018393) #15	Exoc2 (MGP_CAROLIEiJ_G0018394) #16	Hus1b (MGP_CAROLIEiJ_G0018395) #17	MGP_CAROLIEiJ_G0018396 #18	MGP_CAROLIEiJ_G0018397 #19	Foxq1 (MGP_CAROLIEiJ_G0018398) #20	Foxf2 (MGP_CAROLIEiJ_G0018399) #21	Foxc1 (MGP_CAROLIEiJ_G0018400) #22	Gmds (MGP_CAROLIEiJ_G0018401) #23	MGP_CAROLIEiJ_G0018402 #24	Wrnip1 (MGP_CAROLIEiJ_G0018403) #25	MGP_CAROLIEiJ_G0018404 #26	Serpinb1a (MGP_CAROLIEiJ_G0018405) #27	MGP_CAROLIEiJ_G0018406 ##28	Serpinb6b (MGP_CAROLIEiJ_G0018407) #29	Serpinb9 (MGP_CAROLIEiJ_G0018408) #30	MGP_CAROLIEiJ_G0018409 #37	MGP_CAROLIEiJ_G0018410 #37	MGP_CAROLIEiJ_G0018411 #37	MGP_CAROLIEiJ_G0018412 ##29	Serpinb6c (MGP_CAROLIEiJ_G0018413) ##29	Serpinb6a (MGP_CAROLIEiJ_G0018414) ##29	Nqo2 (MGP_CAROLIEiJ_G0018415)
Shrew mouse	MODERN SPECIES	7	Prl4a1 (MGP_PahariEiJ_G0019449) ##7	Prl5a1 (MGP_PahariEiJ_G0019450) #7	Sox4 (MGP_PahariEiJ_G0019451) #8	Cdkal1 (MGP_PahariEiJ_G0019452) #9	E2f3 (MGP_PahariEiJ_G0019453) #10	Mboat1 (MGP_PahariEiJ_G0019454) #11	Agtr1a (MGP_PahariEiJ_G0019455) #12	Uqcrfs1 (MGP_PahariEiJ_G0019456) #13	Dusp22 (MGP_PahariEiJ_G0019457) #14	Irf4 (MGP_PahariEiJ_G0019458) #15	Exoc2 (MGP_PahariEiJ_G0019459) #16	Hus1b (MGP_PahariEiJ_G0019460) #17	MGP_PahariEiJ_G0019461 #19	Foxq1 (MGP_PahariEiJ_G0019462) #20	Foxf2 (MGP_PahariEiJ_G0019463) #21	Foxc1 (MGP_PahariEiJ_G0019464) #22	Gmds (MGP_PahariEiJ_G0019465) #23	MGP_PahariEiJ_G0019466 #24	Wrnip1 (MGP_PahariEiJ_G0019467) #25	MGP_PahariEiJ_G0019468 #26	Serpinb1a (MGP_PahariEiJ_G0019469) #27	MGP_PahariEiJ_G0019470 ##28	Serpinb6b (MGP_PahariEiJ_G0019471) #29	Serpinb9 (MGP_PahariEiJ_G0019472) #30	Serpinb9c (MGP_PahariEiJ_G0019473) #32	MGP_PahariEiJ_G0019474 #37	MGP_PahariEiJ_G0019475 #37	MGP_PahariEiJ_G0019476 #37	MGP_PahariEiJ_G0019477 #37	Serpinb6d (MGP_PahariEiJ_G0019478) ##29	Serpinb6e (MGP_PahariEiJ_G0019479) ##29