Gnathostomata	ANCESTRAL SPECIES	543																ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a	ENSGT00940000155588.b
Euteleostomi	ANCESTRAL SPECIES	141										ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT01030000234610.b.a.a
Sarcopterygii	ANCESTRAL SPECIES	318								ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25
Tetrapoda	ANCESTRAL SPECIES	39	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Amniota	ANCESTRAL SPECIES	10	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Mammalia	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Theria	ANCESTRAL SPECIES	26	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.a.a ##13	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Primates	ANCESTRAL SPECIES	16	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.a.b ##13	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.a.b ##13	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796.g.b ##21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Cebidae	ANCESTRAL SPECIES	17	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796.g.b ##21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Marmoset	MODERN SPECIES	3	PSD (ENSCJAG00000017941) #7	NFKB2 (ENSCJAG00000017928) #8	GBF1 (ENSCJAG00000017861) #9	PITX3 (ENSCJAG00000017858) #10	ELOVL3 (ENSCJAG00000079228) #11	ENSCJAG00000082055 #12	NOLC1 (ENSCJAG00000017832) #13	PPRC1 (ENSCJAG00000017812) #14	LDB1 (ENSCJAG00000017777) #15	HPS6 (ENSCJAG00000022973) #16	ENSCJAG00000056816 #17	ARMH3 (ENSCJAG00000017743) #18	KCNIP2 (ENSCJAG00000017676) #19	OGA (ENSCJAG00000017657) #20	NPM3 (ENSCJAG00000017650) #21	FGF8 (ENSCJAG00000084172) #22	FBXW4 (ENSCJAG00000017627) #23	DPCD (ENSCJAG00000017614) #24	POLL (ENSCJAG00000017600) #25	BTRC (ENSCJAG00000017573) #26	LBX1 (ENSCJAG00000017569) #27	ENSCJAG00000087194 #28	TLX1 (ENSCJAG00000017563) #29	KAZALD1 (ENSCJAG00000017554) #30	SFXN3 (ENSCJAG00000017527) #31	PDZD7 (ENSCJAG00000017518) #32	LZTS2 (ENSCJAG00000041968) #33	ENSCJAG00000078679 #34	ENSCJAG00000017487 #35	ENSCJAG00000062174 #36	ENSCJAG00000017480 #37
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000002554 #18	ENSGT00390000005532.e.b.e	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796.g.b ##21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Capuchin	MODERN SPECIES	71	FBXL15 (ENSCCAG00000035564)	PSD (ENSCCAG00000018781) #7	NFKB2 (ENSCCAG00000036762) #8	GBF1 (ENSCCAG00000035570) #9	PITX3 (ENSCCAG00000024206) #10	ELOVL3 (ENSCCAG00000030858) #11	NOLC1 (ENSCCAG00000031293) #13	PPRC1 (ENSCCAG00000014910) #14	LDB1 (ENSCCAG00000032351) #15	ENSCCAG00000019492	ARMH3 (ENSCCAG00000030229) #18	ENSCCAG00000021166	KCNIP2 (ENSCCAG00000020733) #19	OGA (ENSCCAG00000035955) #20	ENSCCAG00000031043 ##21	FGF8 (ENSCCAG00000028398) #22	FBXW4 (ENSCCAG00000015377) #23	DPCD (ENSCCAG00000031078) #24	POLL (ENSCCAG00000021549) #25	BTRC (ENSCCAG00000028586) #26	TYROBP (ENSCCAG00000030200)	LBX1 (ENSCCAG00000027225) #27	ENSCCAG00000018927	TLX1 (ENSCCAG00000022529) #29	KAZALD1 (ENSCCAG00000025698) #30	SFXN3 (ENSCCAG00000027543) #31	PDZD7 (ENSCCAG00000027027) #32	ENSCCAG00000031185	LZTS2 (ENSCCAG00000028122) #33	TWNK (ENSCCAG00000022331) #34	MRPL43 (ENSCCAG00000027213) #36
Bolivian squirrel monkey	MODERN SPECIES	47	CUEDC2 (ENSSBOG00000033427)	FBXL15 (ENSSBOG00000024265)	PSD (ENSSBOG00000025518) #7	NFKB2 (ENSSBOG00000027266) #8	GBF1 (ENSSBOG00000021062) #9	ENSSBOG00000016252 #10	ELOVL3 (ENSSBOG00000028586) #11	NOLC1 (ENSSBOG00000031205) #13	PPRC1 (ENSSBOG00000021902) #14	LDB1 (ENSSBOG00000029453) #15	ARMH3 (ENSSBOG00000027965) #18	ENSSBOG00000028614	KCNIP2 (ENSSBOG00000029268) #19	OGA (ENSSBOG00000024431) #20	NPM3 (ENSSBOG00000027661) ##21	FGF8 (ENSSBOG00000026891) #22	ENSSBOG00000026520	FBXW4 (ENSSBOG00000036214) #23	DPCD (ENSSBOG00000024659) #24	POLL (ENSSBOG00000035823) #25	BTRC (ENSSBOG00000034480) #26	LBX1 (ENSSBOG00000026504) #27	ENSSBOG00000030742 #29	KAZALD1 (ENSSBOG00000032715) #30	SFXN3 (ENSSBOG00000032559) #31	PDZD7 (ENSSBOG00000035647) #32	LZTS2 (ENSSBOG00000032084) #33	TWNK (ENSSBOG00000020346) #34	MRPL43 (ENSSBOG00000022294) #36	SEMA4G (ENSSBOG00000026805)	SLF2 (ENSSBOG00000034063)
Mas night monkey	MODERN SPECIES	658	C10orf95 (ENSANAG00000032530)	CUEDC2 (ENSANAG00000038457)	FBXL15 (ENSANAG00000005171)	PSD (ENSANAG00000020954) #7	NFKB2 (ENSANAG00000038091) #8	GBF1 (ENSANAG00000028077) #9	PITX3 (ENSANAG00000023017) #10	ELOVL3 (ENSANAG00000037453) #11	PPRC1 (ENSANAG00000029448) #14	LDB1 (ENSANAG00000034893) #15	ENSANAG00000019621	ARMH3 (ENSANAG00000029091) #18	KCNIP2 (ENSANAG00000020362) #19	OGA (ENSANAG00000034639) #20	ENSANAG00000027082 ##21	FGF8 (ENSANAG00000031951) #22	FBXW4 (ENSANAG00000034872) #23	DPCD (ENSANAG00000036663) #24	POLL (ENSANAG00000021199) #25	BTRC (ENSANAG00000035347) #26	LBX1 (ENSANAG00000036814) #27	TLX1 (ENSANAG00000027104) #29	KAZALD1 (ENSANAG00000020414) #30	SFXN3 (ENSANAG00000035635) #31	ENSANAG00000021408	PDZD7 (ENSANAG00000023929) #32	LZTS2 (ENSANAG00000012310) #33	TWNK (ENSANAG00000022264) #34	MRPL43 (ENSANAG00000034938) #36	SEMA4G (ENSANAG00000030905)	SLF2 (ENSANAG00000031592)
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00910000147806	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00910000147806	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029.c #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00910000147806	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Gorilla	MODERN SPECIES	1	CUEDC2 (ENSGGOG00000006994)	FBXL15 (ENSGGOG00000006993)	PSD (ENSGGOG00000006985) #7	NFKB2 (ENSGGOG00000006971) #8	GBF1 (ENSGGOG00000006948) #9	PITX3 (ENSGGOG00000026128) #10	ELOVL3 (ENSGGOG00000024219) #11	NOLC1 (ENSGGOG00000002158) #13	PPRC1 (ENSGGOG00000002155) #14	LDB1 (ENSGGOG00000002151) #15	HPS6 (ENSGGOG00000008892) #16	ARMH3 (ENSGGOG00000006539) #18	KCNIP2 (ENSGGOG00000006534) #19	OGA (ENSGGOG00000002901) #20	NPM3 (ENSGGOG00000027500) #21	FGF8 (ENSGGOG00000015108) #22	ENSGGOG00000005039 #23	DPCD (ENSGGOG00000005035) #24	POLL (ENSGGOG00000005029) #25	ENSGGOG00000038754	BTRC (ENSGGOG00000005023) #26	LBX1 (ENSGGOG00000012521) #27	TLX1 (ENSGGOG00000005880) #29	KAZALD1 (ENSGGOG00000004516) #30	SFXN3 (ENSGGOG00000015442) #31	PDZD7 (ENSGGOG00000015436) #32	LZTS2 (ENSGGOG00000015430) #33	TWNK (ENSGGOG00000015421) #34	ENSGGOG00000023716 #36	SEMA4G (ENSGGOG00000025153)	SLF2 (ENSGGOG00000002070)
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029.c #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Pan	ANCESTRAL SPECIES	16	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029.c #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Bonobo	MODERN SPECIES	1	FBXL15 (ENSPPAG00000041099)	PSD (ENSPPAG00000040288) #7	NFKB2 (ENSPPAG00000030613) #8	GBF1 (ENSPPAG00000042922) #9	ENSPPAG00000008353 #10	ELOVL3 (ENSPPAG00000040688) #11	ENSPPAG00000043390	NOLC1 (ENSPPAG00000038082) #13	PPRC1 (ENSPPAG00000032544) #14	LDB1 (ENSPPAG00000024094) #15	HPS6 (ENSPPAG00000011993) #16	ARMH3 (ENSPPAG00000040734) #18	KCNIP2 (ENSPPAG00000029455) #19	OGA (ENSPPAG00000030424) #20	NPM3 (ENSPPAG00000040517) #21	FGF8 (ENSPPAG00000039985) #22	ENSPPAG00000025691 #23	DPCD (ENSPPAG00000038194) #24	POLL (ENSPPAG00000036999) #25	BTRC (ENSPPAG00000034237) #26	TLX1 (ENSPPAG00000040366) #29	KAZALD1 (ENSPPAG00000029890) #30	SFXN3 (ENSPPAG00000029879) #31	PDZD7 (ENSPPAG00000036974) #32	LZTS2 (ENSPPAG00000003235) #33	TWNK (ENSPPAG00000035055) #34	ENSPPAG00000042828 #36	SEMA4G (ENSPPAG00000039460)	SLF2 (ENSPPAG00000040627)	ENSPPAG00000004195	HIF1AN (ENSPPAG00000035861)
Chimpanzee	MODERN SPECIES	1	CUEDC2 (ENSPTRG00000002891)	FBXL15 (ENSPTRG00000002890)	PSD (ENSPTRG00000002889) #7	NFKB2 (ENSPTRG00000002888) #8	GBF1 (ENSPTRG00000002887) #9	PITX3 (ENSPTRG00000002886) #10	ELOVL3 (ENSPTRG00000002885) #11	NOLC1 (ENSPTRG00000023882) #13	PPRC1 (ENSPTRG00000002883) #14	LDB1 (ENSPTRG00000023411) #15	HPS6 (ENSPTRG00000002881) #16	ARMH3 (ENSPTRG00000002879) #18	KCNIP2 (ENSPTRG00000002878) #19	OGA (ENSPTRG00000002876) #20	NPM3 (ENSPTRG00000002875) #21	FGF8 (ENSPTRG00000002874) #22	FBXW4 (ENSPTRG00000048959) #23	DPCD (ENSPTRG00000002871) #24	POLL (ENSPTRG00000002870) #25	BTRC (ENSPTRG00000002869) #26	LBX1 (ENSPTRG00000002868) #27	TLX1 (ENSPTRG00000002867) #29	KAZALD1 (ENSPTRG00000002865) #30	SFXN3 (ENSPTRG00000002864) #31	PDZD7 (ENSPTRG00000002862) #32	LZTS2 (ENSPTRG00000042870) #33	TWNK (ENSPTRG00000029751) #34	MRPL43 (ENSPTRG00000002858) #36	SEMA4G (ENSPTRG00000052672)	SLF2 (ENSPTRG00000002855)	PAX2 (ENSPTRG00000002853)
Human	MODERN SPECIES	1	CUEDC2 (ENSG00000107874)	FBXL15 (ENSG00000107872)	PSD (ENSG00000059915) #7	NFKB2 (ENSG00000077150) #8	GBF1 (ENSG00000107862) #9	PITX3 (ENSG00000107859) #10	ELOVL3 (ENSG00000119915) #11	NOLC1 (ENSG00000166197) #13	PPRC1 (ENSG00000148840) #14	LDB1 (ENSG00000198728) #15	HPS6 (ENSG00000166189) #16	ARMH3 (ENSG00000120029) #18	KCNIP2 (ENSG00000120049) #19	OGA (ENSG00000198408) #20	NPM3 (ENSG00000107833) #21	FGF8 (ENSG00000107831) #22	FBXW4 (ENSG00000107829) #23	POLL (ENSG00000166169) #25	DPCD (ENSG00000166171) #24	BTRC (ENSG00000166167) #26	LBX1 (ENSG00000138136) #27	TLX1 (ENSG00000107807) #29	KAZALD1 (ENSG00000107821) #30	SFXN3 (ENSG00000107819) #31	PDZD7 (ENSG00000186862) #32	LZTS2 (ENSG00000107816) #33	TWNK (ENSG00000107815) #34	SEMA4G (ENSG00000095539)	MRPL43 (ENSG00000055950) #36	SLF2 (ENSG00000119906)	PAX2 (ENSG00000075891)
Orangutan	MODERN SPECIES	1	CUEDC2 (ENSPPYG00000002602)	ENSPPYG00000002601	NFKB2 (ENSPPYG00000002599) #8	PSD (ENSPPYG00000002600) #7	GBF1 (ENSPPYG00000002598) #9	ENSPPYG00000002597 #10	ELOVL3 (ENSPPYG00000002596) #11	NOLC1 (ENSPPYG00000002595) #13	PPRC1 (ENSPPYG00000002594) #14	LDB1 (ENSPPYG00000002593) #15	HPS6 (ENSPPYG00000030981) #16	ARMH3 (ENSPPYG00000002592) #18	KCNIP2 (ENSPPYG00000002591) #19	OGA (ENSPPYG00000002590) #20	NPM3 (ENSPPYG00000002589) #21	FGF8 (ENSPPYG00000002588) #22	ENSPPYG00000002587	FBXW4 (ENSPPYG00000002586) #23	DPCD (ENSPPYG00000002585) #24	POLL (ENSPPYG00000002584) #25	BTRC (ENSPPYG00000002583) #26	LBX1 (ENSPPYG00000002582) #27	TLX1 (ENSPPYG00000002581) #29	KAZALD1 (ENSPPYG00000002580) #30	SFXN3 (ENSPPYG00000002579) #31	PDZD7 (ENSPPYG00000002578) #32	LZTS2 (ENSPPYG00000002577) #33	TWNK (ENSPPYG00000002576) #34	ENSPPYG00000002575 #36	SEMA4G (ENSPPYG00000002574)	SLF2 (ENSPPYG00000002573)
Gibbon	MODERN SPECIES	18	FBXL15 (ENSNLEG00000015140)	ENSNLEG00000015114 #7	NFKB2 (ENSNLEG00000015079) #8	GBF1 (ENSNLEG00000015044) #9	PITX3 (ENSNLEG00000015040) #10	ELOVL3 (ENSNLEG00000015039) #11	NOLC1 (ENSNLEG00000015012) #13	PPRC1 (ENSNLEG00000014996) #14	LDB1 (ENSNLEG00000014982) #15	HPS6 (ENSNLEG00000019112) #16	ARMH3 (ENSNLEG00000014964) #18	ENSNLEG00000030076	ENSNLEG00000014924 #19	OGA (ENSNLEG00000014902) #20	ENSNLEG00000029281 #21	FGF8 (ENSNLEG00000014890) #22	ENSNLEG00000014885 #23	DPCD (ENSNLEG00000014878) #24	POLL (ENSNLEG00000014861) #25	BTRC (ENSNLEG00000014843) #26	ENSNLEG00000028284	LBX1 (ENSNLEG00000014840) #27	TLX1 (ENSNLEG00000029481) #29	KAZALD1 (ENSNLEG00000035599) #30	SFXN3 (ENSNLEG00000014831) #31	PDZD7 (ENSNLEG00000014823) #32	LZTS2 (ENSNLEG00000014822) #33	TWNK (ENSNLEG00000014818) #34	ENSNLEG00000014812 #36	SEMA4G (ENSNLEG00000014804)	SLF2 (ENSNLEG00000014791)
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Vervet Monkey	MODERN SPECIES	28	FBXL15 (ENSCSAG00000005432)	CUEDC2 (ENSCSAG00000005434)	PSD (ENSCSAG00000005438) #7	NFKB2 (ENSCSAG00000005442) #8	GBF1 (ENSCSAG00000005450) #9	PITX3 (ENSCSAG00000005456) #10	ELOVL3 (ENSCSAG00000005460) #11	NOLC1 (ENSCSAG00000005465) #13	PPRC1 (ENSCSAG00000005471) #14	LDB1 (ENSCSAG00000005474) #15	HPS6 (ENSCSAG00000018450) #16	ARMH3 (ENSCSAG00000005491) #18	KCNIP2 (ENSCSAG00000005501) #19	OGA (ENSCSAG00000005507) #20	NPM3 (ENSCSAG00000005509) #21	FGF8 (ENSCSAG00000005512) #22	FBXW4 (ENSCSAG00000005515) #23	DPCD (ENSCSAG00000005519) #24	POLL (ENSCSAG00000005523) #25	BTRC (ENSCSAG00000005528) #26	LBX1 (ENSCSAG00000005532) #27	TLX1 (ENSCSAG00000005535) #29	KAZALD1 (ENSCSAG00000005540) #30	SFXN3 (ENSCSAG00000005542) #31	ENSCSAG00000005544 #32	LZTS2 (ENSCSAG00000005545) #33	TWNK (ENSCSAG00000005548) #34	MRPL43 (ENSCSAG00000005558) #36	SEMA4G (ENSCSAG00000005560)	SLF2 (ENSCSAG00000005566)	PAX2 (ENSCSAG00000005568)
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Macaca	ANCESTRAL SPECIES	11	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.m #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Pig-tailed macaque	MODERN SPECIES	550	CUEDC2 (ENSMNEG00000041547)	FBXL15 (ENSMNEG00000037370)	PSD (ENSMNEG00000037103) #7	NFKB2 (ENSMNEG00000030201) #8	GBF1 (ENSMNEG00000030880) #9	PITX3 (ENSMNEG00000027087) #10	ELOVL3 (ENSMNEG00000026432) #11	NOLC1 (ENSMNEG00000033199) #13	PPRC1 (ENSMNEG00000031603) #14	LDB1 (ENSMNEG00000039832) #15	HPS6 (ENSMNEG00000003739) #16	ARMH3 (ENSMNEG00000027491) #18	KCNIP2 (ENSMNEG00000033420) #19	OGA (ENSMNEG00000042719) #20	NPM3 (ENSMNEG00000039999) #21	FGF8 (ENSMNEG00000044546) #22	FBXW4 (ENSMNEG00000007347) #23	DPCD (ENSMNEG00000039583) #24	ENSMNEG00000041174	POLL (ENSMNEG00000032214) #25	BTRC (ENSMNEG00000043926) #26	LBX1 (ENSMNEG00000003768) #27	TLX1 (ENSMNEG00000039702) #29	KAZALD1 (ENSMNEG00000041154) #30	SFXN3 (ENSMNEG00000041774) #31	PDZD7 (ENSMNEG00000036573) #32	ENSMNEG00000000753	LZTS2 (ENSMNEG00000022148) #33	TWNK (ENSMNEG00000041560) #34	MRPL43 (ENSMNEG00000038269) #36	SEMA4G (ENSMNEG00000029411)
Macaca_a	ANCESTRAL SPECIES	13	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT01100000263577.a.a.b.b.a.a.b.a.a.a.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.m #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Rhesus	MODERN SPECIES	19	ACTR1A (ENSMMUG00000011949)	MFSD13A (ENSMMUG00000011948)	ENSMMUG00000003000	GBF1 (ENSMMUG00000002985) #9	PITX3 (ENSMMUG00000056167) #10	ELOVL3 (ENSMMUG00000022752) #11	NOLC1 (ENSMMUG00000001183) #13	PPRC1 (ENSMMUG00000001186) #14	LDB1 (ENSMMUG00000009375) #15	ENSMMUG00000056725	HPS6 (ENSMMUG00000009374) #16	ARMH3 (ENSMMUG00000001539) #18	KCNIP2 (ENSMMUG00000015776) #19	OGA (ENSMMUG00000015775) #20	NPM3 (ENSMMUG00000015774) #21	FGF8 (ENSMMUG00000015771) #22	FBXW4 (ENSMMUG00000052198) #23	DPCD (ENSMMUG00000006751) #24	POLL (ENSMMUG00000006747) #25	BTRC (ENSMMUG00000006741) #26	LBX1 (ENSMMUG00000060144) #27	TLX1 (ENSMMUG00000017667) #29	KAZALD1 (ENSMMUG00000017668) #30	SFXN3 (ENSMMUG00000022620) #31	LZTS2 (ENSMMUG00000010674) #33	TWNK (ENSMMUG00000064033) #34	MRPL43 (ENSMMUG00000010679) #36	SEMA4G (ENSMMUG00000010680)	SLF2 (ENSMMUG00000013418)	PAX2 (ENSMMUG00000009163)	ENSMMUG00000040838
Crab-eating macaque	MODERN SPECIES	19	PSD (ENSMFAG00000000282) #7	NFKB2 (ENSMFAG00000031139) #8	ENSMFAG00000047401	GBF1 (ENSMFAG00000002812) #9	PITX3 (ENSMFAG00000045143) #10	ELOVL3 (ENSMFAG00000036362) #11	NOLC1 (ENSMFAG00000044654) #13	ENSMFAG00000038589 #14	LDB1 (ENSMFAG00000041257) #15	ENSMFAG00000061163	ENSMFAG00000051632	ARMH3 (ENSMFAG00000044833) #18	KCNIP2 (ENSMFAG00000046056) #19	OGA (ENSMFAG00000032188) #20	NPM3 (ENSMFAG00000041878) #21	FGF8 (ENSMFAG00000003751) #22	FBXW4 (ENSMFAG00000044810) #23	DPCD (ENSMFAG00000036058) #24	POLL (ENSMFAG00000043080) #25	BTRC (ENSMFAG00000005295) #26	TLX1 (ENSMFAG00000045878) #29	KAZALD1 (ENSMFAG00000063924) #30	SFXN3 (ENSMFAG00000035501) #31	PDZD7 (ENSMFAG00000037794) #32	LZTS2 (ENSMFAG00000048904) #33	TWNK (ENSMFAG00000032824) #34	MRPL43 (ENSMFAG00000036954) #36	SEMA4G (ENSMFAG00000038405)	SLF2 (ENSMFAG00000042449)	PAX2 (ENSMFAG00000041514)	ENSMFAG00000004864
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Olive baboon	MODERN SPECIES	2	CUEDC2 (ENSPANG00000020984)	FBXL15 (ENSPANG00000021009)	PSD (ENSPANG00000021011) #7	NFKB2 (ENSPANG00000021013) #8	GBF1 (ENSPANG00000021018) #9	PITX3 (ENSPANG00000021020) #10	ELOVL3 (ENSPANG00000021015) #11	NOLC1 (ENSPANG00000021014) #13	PPRC1 (ENSPANG00000021042) #14	LDB1 (ENSPANG00000021043) #15	HPS6 (ENSPANG00000004207) #16	ARMH3 (ENSPANG00000021051) #18	KCNIP2 (ENSPANG00000021049) #19	OGA (ENSPANG00000021048) #20	NPM3 (ENSPANG00000021046) #21	FGF8 (ENSPANG00000021045) #22	FBXW4 (ENSPANG00000021059) #23	DPCD (ENSPANG00000021068) #24	POLL (ENSPANG00000021067) #25	BTRC (ENSPANG00000021065) #26	ENSPANG00000045293	LBX1 (ENSPANG00000021064) #27	ENSPANG00000040129	TLX1 (ENSPANG00000021063) #29	KAZALD1 (ENSPANG00000021061) #30	SFXN3 (ENSPANG00000021121) #31	PDZD7 (ENSPANG00000021127) #32	LZTS2 (ENSPANG00000021126) #33	TWNK (ENSPANG00000021123) #34	MRPL43 (ENSPANG00000021122) #36	SEMA4G (ENSPANG00000021137)
Cercopithecinae_d	ANCESTRAL SPECIES	57	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Sooty mangabey	MODERN SPECIES	598	CUEDC2 (ENSCATG00000043008)	FBXL15 (ENSCATG00000038266)	PSD (ENSCATG00000029120) #7	NFKB2 (ENSCATG00000033674) #8	GBF1 (ENSCATG00000041222) #9	PITX3 (ENSCATG00000035980) #10	ELOVL3 (ENSCATG00000029918) #11	NOLC1 (ENSCATG00000020949) #13	PPRC1 (ENSCATG00000029634) #14	LDB1 (ENSCATG00000041139) #15	HPS6 (ENSCATG00000007175) #16	ARMH3 (ENSCATG00000044859) #18	KCNIP2 (ENSCATG00000037631) #19	OGA (ENSCATG00000032677) #20	NPM3 (ENSCATG00000013755) #21	FGF8 (ENSCATG00000032104) #22	FBXW4 (ENSCATG00000042023) #23	DPCD (ENSCATG00000015600) #24	POLL (ENSCATG00000030579) #25	BTRC (ENSCATG00000041687) #26	LBX1 (ENSCATG00000015241) #27	TLX1 (ENSCATG00000027146) #29	KAZALD1 (ENSCATG00000012292) #30	SFXN3 (ENSCATG00000031461) #31	ENSCATG00000013628	PDZD7 (ENSCATG00000041708) #32	LZTS2 (ENSCATG00000035009) #33	TWNK (ENSCATG00000031735) #34	MRPL43 (ENSCATG00000045001) #36	SEMA4G (ENSCATG00000040594)	SLF2 (ENSCATG00000009305)
Drill	MODERN SPECIES	660	MFSD13A (ENSMLEG00000014638)	CUEDC2 (ENSMLEG00000033705)	FBXL15 (ENSMLEG00000031428)	PSD (ENSMLEG00000007902) #7	NFKB2 (ENSMLEG00000025549) #8	GBF1 (ENSMLEG00000030526) #9	ENSMLEG00000041298 #10	ELOVL3 (ENSMLEG00000042786) #11	NOLC1 (ENSMLEG00000040773) #13	PPRC1 (ENSMLEG00000035092) #14	LDB1 (ENSMLEG00000029239) #15	ARMH3 (ENSMLEG00000040244) #18	KCNIP2 (ENSMLEG00000040604) #19	OGA (ENSMLEG00000034257) #20	NPM3 (ENSMLEG00000038129) #21	FGF8 (ENSMLEG00000038840) #22	FBXW4 (ENSMLEG00000039840) #23	DPCD (ENSMLEG00000036892) #24	POLL (ENSMLEG00000044464) #25	BTRC (ENSMLEG00000037020) #26	LBX1 (ENSMLEG00000038173) #27	TLX1 (ENSMLEG00000036491) #29	KAZALD1 (ENSMLEG00000041241) #30	SFXN3 (ENSMLEG00000041643) #31	ENSMLEG00000018361	PDZD7 (ENSMLEG00000044282) #32	LZTS2 (ENSMLEG00000043006) #33	TWNK (ENSMLEG00000028857) #34	PDIA2 (ENSMLEG00000027539)	MRPL43 (ENSMLEG00000031351) #36	SEMA4G (ENSMLEG00000032692)
Rhinopithecus	ANCESTRAL SPECIES	11	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Golden snub-nosed monkey	MODERN SPECIES	3053	CUEDC2 (ENSRROG00000044234)	FBXL15 (ENSRROG00000033504)	PSD (ENSRROG00000041323) #7	NFKB2 (ENSRROG00000034177) #8	GBF1 (ENSRROG00000033162) #9	PITX3 (ENSRROG00000020365) #10	ELOVL3 (ENSRROG00000040217) #11	NOLC1 (ENSRROG00000038056) #13	PPRC1 (ENSRROG00000044599) #14	LDB1 (ENSRROG00000033778) #15	HPS6 (ENSRROG00000015252) #16	ARMH3 (ENSRROG00000032495) #18	KCNIP2 (ENSRROG00000029744) #19	OGA (ENSRROG00000045455) #20	NPM3 (ENSRROG00000029912) #21	FGF8 (ENSRROG00000038994) #22	FBXW4 (ENSRROG00000038393) #23	ENSRROG00000023920	DPCD (ENSRROG00000044275) #24	POLL (ENSRROG00000032669) #25	BTRC (ENSRROG00000030265) #26	LBX1 (ENSRROG00000044455) #27	TLX1 (ENSRROG00000044869) #29	KAZALD1 (ENSRROG00000028521) #30	SFXN3 (ENSRROG00000042473) #31	PDZD7 (ENSRROG00000042033) #32	LZTS2 (ENSRROG00000044508) #33	TWNK (ENSRROG00000034001) #34	MRPL43 (ENSRROG00000036241) #36	SEMA4G (ENSRROG00000029089)	SLF2 (ENSRROG00000032382)
Black snub-nosed monkey	MODERN SPECIES	1538	CUEDC2 (ENSRBIG00000043930)	FBXL15 (ENSRBIG00000042023)	PSD (ENSRBIG00000042590) #7	NFKB2 (ENSRBIG00000028068) #8	GBF1 (ENSRBIG00000005903) #9	PITX3 (ENSRBIG00000035684) #10	ELOVL3 (ENSRBIG00000025844) #11	NOLC1 (ENSRBIG00000032216) #13	PPRC1 (ENSRBIG00000027711) #14	LDB1 (ENSRBIG00000023954) #15	HPS6 (ENSRBIG00000021408) #16	ARMH3 (ENSRBIG00000030224) #18	KCNIP2 (ENSRBIG00000036933) #19	OGA (ENSRBIG00000042557) #20	NPM3 (ENSRBIG00000039086) #21	FGF8 (ENSRBIG00000038141) #22	FBXW4 (ENSRBIG00000029703) #23	DPCD (ENSRBIG00000029630) #24	ENSRBIG00000025168	POLL (ENSRBIG00000034819) #25	BTRC (ENSRBIG00000000373) #26	LBX1 (ENSRBIG00000043576) #27	TLX1 (ENSRBIG00000028309) #29	KAZALD1 (ENSRBIG00000029657) #30	SFXN3 (ENSRBIG00000033345) #31	PDZD7 (ENSRBIG00000030466) #32	ENSRBIG00000006061	LZTS2 (ENSRBIG00000030156) #33	TWNK (ENSRBIG00000042725) #34	MRPL43 (ENSRBIG00000029374) #36	SEMA4G (ENSRBIG00000025014)
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Mouse lemur	MODERN SPECIES	6	MFSD13A (ENSMICG00000011904)	CUEDC2 (ENSMICG00000043889)	FBXL15 (ENSMICG00000042452)	PSD (ENSMICG00000011877) #7	NFKB2 (ENSMICG00000011856) #8	GBF1 (ENSMICG00000011832) #9	PITX3 (ENSMICG00000045312) #10	ELOVL3 (ENSMICG00000048136) #11	NOLC1 (ENSMICG00000011811) #13	PPRC1 (ENSMICG00000011794) #14	LDB1 (ENSMICG00000011785) #15	ARMH3 (ENSMICG00000011767) #18	KCNIP2 (ENSMICG00000011754) #19	OGA (ENSMICG00000011745) #20	NPM3 (ENSMICG00000044119) #21	FGF8 (ENSMICG00000011733) #22	FBXW4 (ENSMICG00000030032) #23	DPCD (ENSMICG00000007381) #24	POLL (ENSMICG00000044578) #25	ENSMICG00000032738	BTRC (ENSMICG00000007365) #26	LBX1 (ENSMICG00000042752) #27	TLX1 (ENSMICG00000000020) #29	KAZALD1 (ENSMICG00000042680) #30	SFXN3 (ENSMICG00000000018) #31	PDZD7 (ENSMICG00000000017) #32	LZTS2 (ENSMICG00000000016) #33	TWNK (ENSMICG00000045106) #34	ENSMICG00000000014 #36	SEMA4G (ENSMICG00000030739)	SLF2 (ENSMICG00000001371)
Lemuriformes_a	ANCESTRAL SPECIES	21	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00940000166765	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Greater bamboo lemur	MODERN SPECIES	1289								NOLC1 (ENSPSMG00000022996) #13	PPRC1 (ENSPSMG00000022903) #14	LDB1 (ENSPSMG00000022814) #15	HPS6 (ENSPSMG00000022801) #16	ARMH3 (ENSPSMG00000022788) #18	KCNIP2 (ENSPSMG00000022640) #19	OGA (ENSPSMG00000022436) #20	NPM3 (ENSPSMG00000022355) #21	FGF8 (ENSPSMG00000022347) #22
Coquerels sifaka	MODERN SPECIES	870	MFSD13A (ENSPCOG00000003583)	CUEDC2 (ENSPCOG00000028615)	FBXL15 (ENSPCOG00000025091)	PSD (ENSPCOG00000014657) #7	NFKB2 (ENSPCOG00000024535) #8	GBF1 (ENSPCOG00000027442) #9	PITX3 (ENSPCOG00000018343) #10	ELOVL3 (ENSPCOG00000022173) #11	ENSPCOG00000028588	PPRC1 (ENSPCOG00000025917) #14	LDB1 (ENSPCOG00000014358) #15	ARMH3 (ENSPCOG00000019882) #18	KCNIP2 (ENSPCOG00000024556) #19	OGA (ENSPCOG00000014940) #20	NPM3 (ENSPCOG00000014704) #21	FGF8 (ENSPCOG00000017981) #22	FBXW4 (ENSPCOG00000021206) #23	DPCD (ENSPCOG00000017781) #24	POLL (ENSPCOG00000019314) #25	ENSPCOG00000026908	ENSPCOG00000010924	BTRC (ENSPCOG00000020549) #26	LBX1 (ENSPCOG00000019643) #27	TLX1 (ENSPCOG00000000103) #29	KAZALD1 (ENSPCOG00000016724) #30	SFXN3 (ENSPCOG00000025511) #31	PDZD7 (ENSPCOG00000026114) #32	LZTS2 (ENSPCOG00000023474) #33	TWNK (ENSPCOG00000014623) #34	MRPL43 (ENSPCOG00000027271) #36	SEMA4G (ENSPCOG00000023281)
Bushbaby	MODERN SPECIES	136	CUEDC2 (ENSOGAG00000016405)	FBXL15 (ENSOGAG00000016397)	PSD (ENSOGAG00000016389) #7	NFKB2 (ENSOGAG00000016379) #8	GBF1 (ENSOGAG00000016366) #9	PITX3 (ENSOGAG00000029285) #10	ELOVL3 (ENSOGAG00000016363) #11	NOLC1 (ENSOGAG00000016359) #13	PPRC1 (ENSOGAG00000016354) #14	LDB1 (ENSOGAG00000016349) #15	HPS6 (ENSOGAG00000033543) #16	ARMH3 (ENSOGAG00000010009) #18	KCNIP2 (ENSOGAG00000010006) #19	ENSOGAG00000010002 #20	NPM3 (ENSOGAG00000010001) #21	FGF8 (ENSOGAG00000024920) #22	FBXW4 (ENSOGAG00000033125) #23	POLL (ENSOGAG00000012042) #25	BTRC (ENSOGAG00000014623) #26	LBX1 (ENSOGAG00000008679) #27	TLX1 (ENSOGAG00000013614) #29	KAZALD1 (ENSOGAG00000011722) #30	SFXN3 (ENSOGAG00000012881) #31	PDZD7 (ENSOGAG00000012875) #32	LZTS2 (ENSOGAG00000012873) #33	TWNK (ENSOGAG00000029204) #34	MRPL43 (ENSOGAG00000030715) #36	SEMA4G (ENSOGAG00000015286)	SLF2 (ENSOGAG00000015280)	PAX2 (ENSOGAG00000015274)	HIF1AN (ENSOGAG00000010425)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Glires	ANCESTRAL SPECIES	16	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Lagomorpha	ANCESTRAL SPECIES	17	ENSGT00500000045093	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.a.a ##13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Rabbit	MODERN SPECIES	9	MFSD13A (ENSOCUG00000005770)	FBXL15 (ENSOCUG00000005764)	CUEDC2 (ENSOCUG00000023995)	PSD (ENSOCUG00000005751) #7	NFKB2 (ENSOCUG00000005735) #8	GBF1 (ENSOCUG00000005714) #9	PITX3 (ENSOCUG00000016065) #10	ELOVL3 (ENSOCUG00000016071) #11	ENSOCUG00000000516 ##13	PPRC1 (ENSOCUG00000000510) #14	LDB1 (ENSOCUG00000025582) #15	ARMH3 (ENSOCUG00000002776) #18	KCNIP2 (ENSOCUG00000026348) #19	OGA (ENSOCUG00000002768) #20	NPM3 (ENSOCUG00000016819) #21	ENSOCUG00000027864 #22	FBXW4 (ENSOCUG00000015386) #23	DPCD (ENSOCUG00000015373) #24	POLL (ENSOCUG00000015364) #25	BTRC (ENSOCUG00000015353) #26	LBX1 (ENSOCUG00000013145) #27	TLX1 (ENSOCUG00000013136) #29	KAZALD1 (ENSOCUG00000002974) #30	SFXN3 (ENSOCUG00000002751) #31	ENSOCUG00000031924 #32	ENSOCUG00000006651 #32	LZTS2 (ENSOCUG00000021502) #33	TWNK (ENSOCUG00000002746) #34	MRPL43 (ENSOCUG00000002742) #36	SEMA4G (ENSOCUG00000002737)	SLF2 (ENSOCUG00000002728)
Rodentia	ANCESTRAL SPECIES	16	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Marmotini	ANCESTRAL SPECIES	16	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Alpin marmot	MODERN SPECIES	39	ENSMMMG00000023323	ENSMMMG00000023315 #7	ENSMMMG00000023312 #7	NFKB2 (ENSMMMG00000023297) #8	GBF1 (ENSMMMG00000023283) #9	PITX3 (ENSMMMG00000023281) #10	ELOVL3 (ENSMMMG00000023279) #11	NOLC1 (ENSMMMG00000023274) #13	PPRC1 (ENSMMMG00000023259) #14	LDB1 (ENSMMMG00000023248) #15	HPS6 (ENSMMMG00000023243) #16	ARMH3 (ENSMMMG00000023233) #18	KCNIP2 (ENSMMMG00000023225) #19	OGA (ENSMMMG00000023220) #20	NPM3 (ENSMMMG00000023217) #21	FGF8 (ENSMMMG00000023215) #22	FBXW4 (ENSMMMG00000023212) #23	DPCD (ENSMMMG00000023210) #24	POLL (ENSMMMG00000023200) #25	BTRC (ENSMMMG00000023182) #26	LBX1 (ENSMMMG00000023177) #27	ENSMMMG00000023172 #29	KAZALD1 (ENSMMMG00000023167) #30	SFXN3 (ENSMMMG00000023149) #31	ENSMMMG00000023146	ENSMMMG00000023144 #32	ENSMMMG00000023099 #32	ENSMMMG00000023095 #33	TWNK (ENSMMMG00000023092) #34	MRPL43 (ENSMMMG00000023087) #36	SEMA4G (ENSMMMG00000023078)
Marmotini_b	ANCESTRAL SPECIES	76	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Arctic ground squirrel	MODERN SPECIES	373								NOLC1 (ENSUPAG00010009783) #13	PPRC1 (ENSUPAG00010009814) #14	ENSUPAG00010009826 #15	HPS6 (ENSUPAG00010009845) #16	ARMH3 (ENSUPAG00010009848) #18	KCNIP2 (ENSUPAG00010009866) #19	OGA (ENSUPAG00010010052) #20	NPM3 (ENSUPAG00010010073) #21	FGF8 (ENSUPAG00010010083) #22	FBXW4 (ENSUPAG00010010202) #23	DPCD (ENSUPAG00010010220) #24	POLL (ENSUPAG00010010241) #25	BTRC (ENSUPAG00010010245) #26	ENSUPAG00010010321	LBX1 (ENSUPAG00010010328) #27	TLX1 (ENSUPAG00010010336) #29	KAZALD1 (ENSUPAG00010010340) #30	SFXN3 (ENSUPAG00010010359) #31	ENSUPAG00010010444 #32	ENSUPAG00010010561 #32	LZTS2 (ENSUPAG00010010572) #33	TWNK (ENSUPAG00010010588) #34	MRPL43 (ENSUPAG00010010598) #36	SEMA4G (ENSUPAG00010010602)
Squirrel	MODERN SPECIES	200	FBXL15 (ENSSTOG00000022528)	PSD (ENSSTOG00000021577) #7	NFKB2 (ENSSTOG00000002191) #8	GBF1 (ENSSTOG00000002171) #9	PITX3 (ENSSTOG00000015025) #10	ELOVL3 (ENSSTOG00000015013) #11	NOLC1 (ENSSTOG00000002168) #13	ENSSTOG00000002156 #14	ENSSTOG00000034359 #14	LDB1 (ENSSTOG00000002139) #15	HPS6 (ENSSTOG00000024918) #16	ARMH3 (ENSSTOG00000015633) #18	KCNIP2 (ENSSTOG00000021030) #19	ENSSTOG00000032901 #20	NPM3 (ENSSTOG00000022621) #21	FGF8 (ENSSTOG00000023351) #22	FBXW4 (ENSSTOG00000011495) #23	DPCD (ENSSTOG00000011490) #24	POLL (ENSSTOG00000011485) #25	BTRC (ENSSTOG00000022481) #26	LBX1 (ENSSTOG00000006491) #27	ENSSTOG00000023842 #29	KAZALD1 (ENSSTOG00000015240) #30	SFXN3 (ENSSTOG00000026614) #31	PDZD7 (ENSSTOG00000009046) #32	LZTS2 (ENSSTOG00000015232) #33	TWNK (ENSSTOG00000009030) #34	MRPL43 (ENSSTOG00000009016) #36	SEMA4G (ENSSTOG00000008994)	SLF2 (ENSSTOG00000008951)	PAX2 (ENSSTOG00000011575)
Eurasian red squirrel	MODERN SPECIES	13	MFSD13A (ENSSVLG00005003972)	CUEDC2 (ENSSVLG00005004017)	FBXL15 (ENSSVLG00005004039)	PSD (ENSSVLG00005004064) #7	NFKB2 (ENSSVLG00005004099) #8	GBF1 (ENSSVLG00005004145) #9	PITX3 (ENSSVLG00005004181) #10	ELOVL3 (ENSSVLG00005004199) #11	NOLC1 (ENSSVLG00005004225) #13	PPRC1 (ENSSVLG00005004252) #14	LDB1 (ENSSVLG00005004323) #15	HPS6 (ENSSVLG00005004366) #16	ARMH3 (ENSSVLG00005004399) #18	KCNIP2 (ENSSVLG00005004570) #19	OGA (ENSSVLG00005004824) #20	FGF8 (ENSSVLG00005005038) #22	FBXW4 (ENSSVLG00005005056) #23	DPCD (ENSSVLG00005005104) #24	POLL (ENSSVLG00005005135) #25	BTRC (ENSSVLG00005005205) #26	LBX1 (ENSSVLG00005005245) #27	TLX1 (ENSSVLG00005005266) #29	KAZALD1 (ENSSVLG00005005289) #30	SFXN3 (ENSSVLG00005005315) #31	PDZD7 (ENSSVLG00005005347) #32	LZTS2 (ENSSVLG00005005380) #33	TWNK (ENSSVLG00005005412) #34	MRPL43 (ENSSVLG00005005460) #36	SEMA4G (ENSSVLG00005005503)	SLF2 (ENSSVLG00005005553)	PAX2 (ENSSVLG00005005719)
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Naked mole-rat female	MODERN SPECIES	4	PSD (ENSHGLG00000002612) #7	GBF1 (ENSHGLG00000002115) #9	ENSHGLG00000042455 #9	PITX3 (ENSHGLG00000001851) #10	ELOVL3 (ENSHGLG00000003511) #11	ENSHGLG00000049553	NOLC1 (ENSHGLG00000003156) #13	PPRC1 (ENSHGLG00000002783) #14	LDB1 (ENSHGLG00000002254) #15	HPS6 (ENSHGLG00000020621) #16	ARMH3 (ENSHGLG00000002014) #18	ENSHGLG00000043110 #18	KCNIP2 (ENSHGLG00000019185) #19	OGA (ENSHGLG00000019033) #20	NPM3 (ENSHGLG00000049984) #21	FGF8 (ENSHGLG00000013482) #22	FBXW4 (ENSHGLG00000018911) #23	DPCD (ENSHGLG00000019507) #24	POLL (ENSHGLG00000019504) #25	ENSHGLG00000002588 #26	ENSHGLG00000019498	LBX1 (ENSHGLG00000047414) #27	TLX1 (ENSHGLG00000001823) #29	KAZALD1 (ENSHGLG00000002854) #30	SFXN3 (ENSHGLG00000002107) #31	PDZD7 (ENSHGLG00000046047) #32	ENSHGLG00000035111 #32	LZTS2 (ENSHGLG00000039393) #33	ENSHGLG00000002240 #34	ENSHGLG00000040204 #36	SLF2 (ENSHGLG00000011302)
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Guinea pig	MODERN SPECIES	11	CUEDC2 (ENSCPOG00000032492)	FBXL15 (ENSCPOG00000021451)	PSD (ENSCPOG00000000156) #7	NFKB2 (ENSCPOG00000004847) #8	GBF1 (ENSCPOG00000004514) #9	PITX3 (ENSCPOG00000036365) #10	ELOVL3 (ENSCPOG00000014884) #11	NOLC1 (ENSCPOG00000004504) #13	PPRC1 (ENSCPOG00000032149) #14	LDB1 (ENSCPOG00000010311) #15	HPS6 (ENSCPOG00000006084) #16	ARMH3 (ENSCPOG00000031847) #18	KCNIP2 (ENSCPOG00000011918) #19	OGA (ENSCPOG00000000219) #20	NPM3 (ENSCPOG00000006301) #21	FGF8 (ENSCPOG00000021533) #22	ENSCPOG00000032448 #23	DPCD (ENSCPOG00000005499) #24	POLL (ENSCPOG00000005493) #25	BTRC (ENSCPOG00000005488) #26	LBX1 (ENSCPOG00000025830) #27	TLX1 (ENSCPOG00000003194) #29	KAZALD1 (ENSCPOG00000015270) #30	SFXN3 (ENSCPOG00000000955) #31	ENSCPOG00000000952 #32	LZTS2 (ENSCPOG00000035545) #33	TWNK (ENSCPOG00000000950) #34	MRPL43 (ENSCPOG00000040768) #36	SEMA4G (ENSCPOG00000036564)	SLF2 (ENSCPOG00000000940)	PAX2 (ENSCPOG00000000939)
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Degu	MODERN SPECIES	83	GBF1 (ENSODEG00000007076) #9	PITX3 (ENSODEG00000007162) #10	ELOVL3 (ENSODEG00000006606) #11	NOLC1 (ENSODEG00000006304) #13	ENSODEG00000006985 #14	ENSODEG00000009568 #14	LDB1 (ENSODEG00000009090) #15	HPS6 (ENSODEG00000007638) #16	ENSODEG00000019424	ARMH3 (ENSODEG00000007299) #18	ENSODEG00000010569	KCNIP2 (ENSODEG00000007199) #19	ENSODEG00000019634	OGA (ENSODEG00000008001) #20	NPM3 (ENSODEG00000006704) #21	FGF8 (ENSODEG00000006423) #22	FBXW4 (ENSODEG00000007897) #23	DPCD (ENSODEG00000005983) #24	POLL (ENSODEG00000007469) #25	BTRC (ENSODEG00000008464) #26	LBX1 (ENSODEG00000006684) #27	ENSODEG00000006094 #29	KAZALD1 (ENSODEG00000005804) #30	SFXN3 (ENSODEG00000007542) #31	PDZD7 (ENSODEG00000006718) #32	LZTS2 (ENSODEG00000006752) #33	TWNK (ENSODEG00000006072) #34	ENSODEG00000006668 #36	SEMA4G (ENSODEG00000005984)	SLF2 (ENSODEG00000008647)	PAX2 (ENSODEG00000006975)
Long-tailed chinchilla	MODERN SPECIES	192	MFSD13A (ENSCLAG00000001530)	CUEDC2 (ENSCLAG00000001551)	FBXL15 (ENSCLAG00000001578)	PSD (ENSCLAG00000003741) #7	NFKB2 (ENSCLAG00000004104) #8	GBF1 (ENSCLAG00000004338) #9	PITX3 (ENSCLAG00000005073) #10	ELOVL3 (ENSCLAG00000005342) #11	NOLC1 (ENSCLAG00000001046) #13	PPRC1 (ENSCLAG00000001364) #14	LDB1 (ENSCLAG00000001555) #15	HPS6 (ENSCLAG00000001624) #16	ARMH3 (ENSCLAG00000001673) #18	KCNIP2 (ENSCLAG00000000954) #19	OGA (ENSCLAG00000001003) #20	FGF8 (ENSCLAG00000001075) #22	FBXW4 (ENSCLAG00000001132) #23	DPCD (ENSCLAG00000001147) #24	POLL (ENSCLAG00000001165) #25	BTRC (ENSCLAG00000001243) #26	LBX1 (ENSCLAG00000001298) #27	ENSCLAG00000001309 #29	ENSCLAG00000001318 #30	SFXN3 (ENSCLAG00000001996) #31	PDZD7 (ENSCLAG00000003178) #32	LZTS2 (ENSCLAG00000003292) #33	TWNK (ENSCLAG00000003486) #34	MRPL43 (ENSCLAG00000003510) #36	SEMA4G (ENSCLAG00000003839)	SLF2 (ENSCLAG00000003936)	PAX2 (ENSCLAG00000007272)
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Kangaroo rat	MODERN SPECIES	355	Psd (ENSDORG00000013410) #7	Nfkb2 (ENSDORG00000013409) #8	ENSDORG00000013406 #9	ENSDORG00000024842 #9	Pitx3 (ENSDORG00000023993) #10	Elovl3 (ENSDORG00000027255) #11	Nolc1 (ENSDORG00000001056) #13	Pprc1 (ENSDORG00000001046) #14	Ldb1 (ENSDORG00000003498) #15	Hps6 (ENSDORG00000028123) #16	ENSDORG00000023337	Armh3 (ENSDORG00000003496) #18	Kcnip2 (ENSDORG00000003495) #19	Oga (ENSDORG00000003493) #20	Npm3 (ENSDORG00000003491) #21	Fgf8 (ENSDORG00000029227) #22	Fbxw4 (ENSDORG00000014212) #23	Dpcd (ENSDORG00000014209) #24	Poll (ENSDORG00000024173) #25	Btrc (ENSDORG00000014204) #26	Lbx1 (ENSDORG00000029567) #27	ENSDORG00000025952 #29	Kazald1 (ENSDORG00000016417) #30	Sfxn3 (ENSDORG00000016415) #31	ENSDORG00000016413 #32	Lzts2 (ENSDORG00000016411) #33	Twnk (ENSDORG00000004461) #34	Mrpl43 (ENSDORG00000023986) #36	Sema4g (ENSDORG00000004459)	Slf2 (ENSDORG00000004458)	Pax2 (ENSDORG00000006193)
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Lesser Egyptian jerboa	MODERN SPECIES	70	Nfkb2 (ENSJJAG00000011519) #8	ENSJJAG00000018772	ENSJJAG00000010788 #9	ENSJJAG00000023637 #9	Pitx3 (ENSJJAG00000020721) #10	Elovl3 (ENSJJAG00000020437) #11	Nolc1 (ENSJJAG00000021131) #13	ENSJJAG00000005177 #14	ENSJJAG00000024088 #14	Ldb1 (ENSJJAG00000012307) #15	Hps6 (ENSJJAG00000011662) #16	Armh3 (ENSJJAG00000018861) #18	Kcnip2 (ENSJJAG00000019358) #19	Oga (ENSJJAG00000020565) #20	Npm3 (ENSJJAG00000018907) #21	Fgf8 (ENSJJAG00000014440) #22	ENSJJAG00000016263 #23	Dpcd (ENSJJAG00000010119) #24	Poll (ENSJJAG00000024104) #25	Btrc (ENSJJAG00000011813) #26	Lbx1 (ENSJJAG00000021756) #27	ENSJJAG00000006430 #29	Kazald1 (ENSJJAG00000021687) #30	Sfxn3 (ENSJJAG00000016145) #31	ENSJJAG00000014285 #32	Lzts2 (ENSJJAG00000015056) #33	ENSJJAG00000006388 #34	Mrpl43 (ENSJJAG00000023922) #36	Sema4g (ENSJJAG00000000673)	Slf2 (ENSJJAG00000023625)	Pax2 (ENSJJAG00000000526)
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1300	Fbxl15 (ENSNGAG00000011400)	Psd (ENSNGAG00000011541) #7	Nfkb2 (ENSNGAG00000022988) #8	Gbf1 (ENSNGAG00000006095) #9	Pitx3 (ENSNGAG00000021500) #10	Elovl3 (ENSNGAG00000013825) #11	Nolc1 (ENSNGAG00000024139) #13	Pprc1 (ENSNGAG00000016516) #14	Ldb1 (ENSNGAG00000024157) #15	ENSNGAG00000021169	Hps6 (ENSNGAG00000012214) #16	Armh3 (ENSNGAG00000023147) #18	Kcnip2 (ENSNGAG00000024132) #19	Oga (ENSNGAG00000011804) #20	ENSNGAG00000022833 #21	Fgf8 (ENSNGAG00000018999) #22	Fbxw4 (ENSNGAG00000022749) #23	Dpcd (ENSNGAG00000015959) #24	Poll (ENSNGAG00000021402) #25	Btrc (ENSNGAG00000001803) #26	ENSNGAG00000023625	Lbx1 (ENSNGAG00000023979) #27	Tlx1 (ENSNGAG00000024255) #29	Kazald1 (ENSNGAG00000011414) #30	Sfxn3 (ENSNGAG00000017442) #31	ENSNGAG00000004602 #32	Lzts2 (ENSNGAG00000023942) #33	Twnk (ENSNGAG00000023645) #34	Mrpl43 (ENSNGAG00000023476) #36	Sema4g (ENSNGAG00000014131)	Slf2 (ENSNGAG00000022141)
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Murinae	ANCESTRAL SPECIES		ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801.d #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Mus	ANCESTRAL SPECIES		ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801.d #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801.d #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.p #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801.d #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.p #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Mouse	MODERN SPECIES	10	Cuedc2 (ENSMUSG00000036748)	Fbxl15 (ENSMUSG00000025226)	Psd (ENSMUSG00000037126) #7	Nfkb2 (ENSMUSG00000025225) #8	Gbf1 (ENSMUSG00000025224) #9	Pitx3 (ENSMUSG00000025229) #10	Elovl3 (ENSMUSG00000038754) #11	Nolc1 (ENSMUSG00000015176) #13	Pprc1 (ENSMUSG00000055491) #14	Ldb1 (ENSMUSG00000025223) #15	Hps6 (ENSMUSG00000074811) #16	Armh3 (ENSMUSG00000039901) #18	Kcnip2 (ENSMUSG00000025221) #19	Oga (ENSMUSG00000025220) #20	Npm3 (ENSMUSG00000056209) #21	Fgf8 (ENSMUSG00000025219) #22	Fbxw4 (ENSMUSG00000040913) #23	Dpcd (ENSMUSG00000041035) #24	Poll (ENSMUSG00000025218) #25	Btrc (ENSMUSG00000025217) #26	Lbx1 (ENSMUSG00000025216) #27	Tlx1 (ENSMUSG00000025215) #29	Kazald1 (ENSMUSG00000025213) #30	Sfxn3 (ENSMUSG00000025212) #31	Pdzd7 (ENSMUSG00000074818) #32	Lzts2 (ENSMUSG00000035342) #33	Twnk (ENSMUSG00000025209) #34	Mrpl43 (ENSMUSG00000025208) #36	Sema4g (ENSMUSG00000025207)	Slf2 (ENSMUSG00000036097)	Pax2 (ENSMUSG00000004231)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801.d #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.p #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Steppe mouse	MODERN SPECIES	3317	Cuedc2 (ENSMSIG00000011362)	Fbxl15 (ENSMSIG00000011465)	Psd (ENSMSIG00000011495) #7	Nfkb2 (ENSMSIG00000011557) #8	Gbf1 (ENSMSIG00000011585) #9	Pitx3 (ENSMSIG00000011679) #10	Elovl3 (ENSMSIG00000011691) #11	Nolc1 (ENSMSIG00000011702) #13	Pprc1 (ENSMSIG00000011750) #14	Ldb1 (ENSMSIG00000011766) #15	Hps6 (ENSMSIG00000011802) #16	Armh3 (ENSMSIG00000011813) #18	ENSMSIG00000011884 #19	Oga (ENSMSIG00000012429) #20	Npm3 (ENSMSIG00000012497) #21	Fgf8 (ENSMSIG00000012521) #22	ENSMSIG00000012591 #23	ENSMSIG00000012629 #24	Poll (ENSMSIG00000012645) #25	Btrc (ENSMSIG00000012680) #26	Lbx1 (ENSMSIG00000012769) #27	Tlx1 (ENSMSIG00000012781) #29	Kazald1 (ENSMSIG00000012802) #30	Sfxn3 (ENSMSIG00000012828) #31	Pdzd7 (ENSMSIG00000012912) #32	ENSMSIG00000012980	Lzts2 (ENSMSIG00000012984) #33	Twnk (ENSMSIG00000013010) #34	Mrpl43 (ENSMSIG00000013030) #36	Sema4g (ENSMSIG00000013048)	Slf2 (ENSMSIG00000013125)
spretus	MODERN SPECIES	10	Cuedc2 (MGP_SPRETEiJ_G0023955)	Fbxl15 (MGP_SPRETEiJ_G0023954)	Psd (MGP_SPRETEiJ_G0023953) #7	Nfkb2 (MGP_SPRETEiJ_G0023952) #8	Gbf1 (MGP_SPRETEiJ_G0023951) #9	Pitx3 (MGP_SPRETEiJ_G0023950) #10	Elovl3 (MGP_SPRETEiJ_G0023949) #11	Nolc1 (MGP_SPRETEiJ_G0023948) #13	Pprc1 (MGP_SPRETEiJ_G0023947) #14	Ldb1 (MGP_SPRETEiJ_G0023946) #15	Hps6 (MGP_SPRETEiJ_G0023945) #16	Armh3 (MGP_SPRETEiJ_G0023944) #18	Kcnip2 (MGP_SPRETEiJ_G0023943) #19	Oga (MGP_SPRETEiJ_G0023942) #20	Npm3 (MGP_SPRETEiJ_G0023941) #21	Fgf8 (MGP_SPRETEiJ_G0023940) #22	MGP_SPRETEiJ_G0023939 #23	Dpcd (MGP_SPRETEiJ_G0023938) #24	Poll (MGP_SPRETEiJ_G0023937) #25	Btrc (MGP_SPRETEiJ_G0023936) #26	Lbx1 (MGP_SPRETEiJ_G0023935) #27	Tlx1 (MGP_SPRETEiJ_G0023934) #29	Kazald1 (MGP_SPRETEiJ_G0023933) #30	Sfxn3 (MGP_SPRETEiJ_G0023932) #31	Pdzd7 (MGP_SPRETEiJ_G0023931) #32	Lzts2 (MGP_SPRETEiJ_G0023930) #33	Twnk (MGP_SPRETEiJ_G0023929) #34	Mrpl43 (MGP_SPRETEiJ_G0023928) #36	Sema4g (MGP_SPRETEiJ_G0023927)	Slf2 (MGP_SPRETEiJ_G0023926)	Pax2 (MGP_SPRETEiJ_G0023925)
Ryukyu mouse	MODERN SPECIES	10	Cuedc2 (MGP_CAROLIEiJ_G0023034)	Fbxl15 (MGP_CAROLIEiJ_G0023033)	Psd (MGP_CAROLIEiJ_G0023032) #7	Nfkb2 (MGP_CAROLIEiJ_G0023031) #8	Gbf1 (MGP_CAROLIEiJ_G0023030) #9	Pitx3 (MGP_CAROLIEiJ_G0023029) #10	Elovl3 (MGP_CAROLIEiJ_G0023028) #11	Nolc1 (MGP_CAROLIEiJ_G0023027) #13	Pprc1 (MGP_CAROLIEiJ_G0023026) #14	Ldb1 (MGP_CAROLIEiJ_G0023025) #15	Hps6 (MGP_CAROLIEiJ_G0023024) #16	Armh3 (MGP_CAROLIEiJ_G0023023) #18	Kcnip2 (MGP_CAROLIEiJ_G0023022) #19	Oga (MGP_CAROLIEiJ_G0023021) #20	Npm3 (MGP_CAROLIEiJ_G0023020) #21	Fgf8 (MGP_CAROLIEiJ_G0023019) #22	Fbxw4 (MGP_CAROLIEiJ_G0023018) #23	Dpcd (MGP_CAROLIEiJ_G0023017) #24	Poll (MGP_CAROLIEiJ_G0023016) #25	Btrc (MGP_CAROLIEiJ_G0023015) #26	Lbx1 (MGP_CAROLIEiJ_G0023014) #27	Tlx1 (MGP_CAROLIEiJ_G0023013) #29	Kazald1 (MGP_CAROLIEiJ_G0023012) #30	Sfxn3 (MGP_CAROLIEiJ_G0023011) #31	Pdzd7 (MGP_CAROLIEiJ_G0023010) #32	Lzts2 (MGP_CAROLIEiJ_G0023009) #33	Twnk (MGP_CAROLIEiJ_G0023008) #34	Mrpl43 (MGP_CAROLIEiJ_G0023007) #36	Sema4g (MGP_CAROLIEiJ_G0023006)	Slf2 (MGP_CAROLIEiJ_G0023005)	Pax2 (MGP_CAROLIEiJ_G0023004)
Shrew mouse	MODERN SPECIES		Cuedc2 (MGP_PahariEiJ_G0014524)	Fbxl15 (MGP_PahariEiJ_G0014523)	Psd (MGP_PahariEiJ_G0014522) #7	Nfkb2 (MGP_PahariEiJ_G0014521) #8	Gbf1 (MGP_PahariEiJ_G0014520) #9	Pitx3 (MGP_PahariEiJ_G0014519) #10	Elovl3 (MGP_PahariEiJ_G0014518) #11	Nolc1 (MGP_PahariEiJ_G0014517) #13	Pprc1 (MGP_PahariEiJ_G0014516) #14	Ldb1 (MGP_PahariEiJ_G0014515) #15	Hps6 (MGP_PahariEiJ_G0014514) #16	Armh3 (MGP_PahariEiJ_G0014513) #18	Kcnip2 (MGP_PahariEiJ_G0014512) #19	Oga (MGP_PahariEiJ_G0014511) #20	Npm3 (MGP_PahariEiJ_G0014510) #21	Fgf8 (MGP_PahariEiJ_G0014509) #22	MGP_PahariEiJ_G0014508 #23	Dpcd (MGP_PahariEiJ_G0014507) #24	Poll (MGP_PahariEiJ_G0014506) #25	Btrc (MGP_PahariEiJ_G0014505) #26	Lbx1 (MGP_PahariEiJ_G0014504) #27	Tlx1 (MGP_PahariEiJ_G0014503) #29	Kazald1 (MGP_PahariEiJ_G0014502) #30	Sfxn3 (MGP_PahariEiJ_G0014501) #31	Pdzd7 (MGP_PahariEiJ_G0014500) #32	MGP_PahariEiJ_G0014499 #33	Twnk (MGP_PahariEiJ_G0014498) #34	Mrpl43 (MGP_PahariEiJ_G0014497) #36	Sema4g (MGP_PahariEiJ_G0014496)	Slf2 (MGP_PahariEiJ_G0014495)	Pax2 (MGP_PahariEiJ_G0014494)
Rat	MODERN SPECIES		Cuedc2 (ENSRNOG00000019574)	Fbxl15 (ENSRNOG00000019509)	Psd (ENSRNOG00000019435) #7	Nfkb2 (ENSRNOG00000019311) #8	Gbf1 (ENSRNOG00000026048) #9	Pitx3 (ENSRNOG00000019194) #10	Elovl3 (ENSRNOG00000019124) #11	Nolc1 (ENSRNOG00000018704) #13	Pprc1 (ENSRNOG00000018561) #14	Ldb1 (ENSRNOG00000018468) #15	Hps6 (ENSRNOG00000018433) #16	Armh3 (ENSRNOG00000025523) #18	Kcnip2 (ENSRNOG00000018018) #19	Oga (ENSRNOG00000017822) #20	Npm3 (ENSRNOG00000017622) #21	Fgf8 (ENSRNOG00000017524) #22	Fbxw4 (ENSRNOG00000046211) #23	Dpcd (ENSRNOG00000017241) #24	Poll (ENSRNOG00000016748) #25	Btrc (ENSRNOG00000016280) #26	Lbx1 (ENSRNOG00000025520) #27	Tlx1 (ENSRNOG00000016120) #29	Kazald1 (ENSRNOG00000016058) #30	Sfxn3 (ENSRNOG00000015442) #31	Pdzd7 (ENSRNOG00000032946) #32	Lzts2 (ENSRNOG00000014969) #33	Twnk (ENSRNOG00000014935) #34	Mrpl43 (ENSRNOG00000014890) #36	Sema4g (ENSRNOG00000014650)	AC121209.1 (ENSRNOG00000036588)	Slf2 (ENSRNOG00000014482)
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Golden Hamster	MODERN SPECIES	617	Cuedc2 (ENSMAUG00000015254)	Fbxl15 (ENSMAUG00000015625)	Psd (ENSMAUG00000017086) #7	Nfkb2 (ENSMAUG00000016292) #8	ENSMAUG00000017130 #9	ENSMAUG00000017791 #9	Pitx3 (ENSMAUG00000015434) #10	Elovl3 (ENSMAUG00000013792) #11	Pprc1 (ENSMAUG00000016674) #14	Ldb1 (ENSMAUG00000018515) #15	Hps6 (ENSMAUG00000002039) #16	Armh3 (ENSMAUG00000019449) #18	Kcnip2 (ENSMAUG00000019652) #19	Oga (ENSMAUG00000015052) #20	Npm3 (ENSMAUG00000015218) #21	Fgf8 (ENSMAUG00000016383) #22	ENSMAUG00000015569	ENSMAUG00000015787 #23	Dpcd (ENSMAUG00000017884) #24	Poll (ENSMAUG00000014674) #25	Btrc (ENSMAUG00000016001) #26	Lbx1 (ENSMAUG00000015198) #27	Tlx1 (ENSMAUG00000015538) #29	Kazald1 (ENSMAUG00000017475) #30	Sfxn3 (ENSMAUG00000017975) #31	ENSMAUG00000015875 #32	Lzts2 (ENSMAUG00000018041) #33	Twnk (ENSMAUG00000015403) #34	Mrpl43 (ENSMAUG00000015594) #36	Sema4g (ENSMAUG00000016054)	Slf2 (ENSMAUG00000017620)
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	215	Fbxl15 (ENSCGRG00001022005)	Cuedc2 (ENSCGRG00001022970)	Psd (ENSCGRG00001000373) #7	Nfkb2 (ENSCGRG00001009030) #8	Gbf1 (ENSCGRG00001022494) #9	Pitx3 (ENSCGRG00001024147) #10	ELOVL3 (ENSCGRG00001005008) #11	Nolc1 (ENSCGRG00001009806) #13	Pprc1 (ENSCGRG00001011726) #14	Ldb1 (ENSCGRG00001020743) #15	Hps6 (ENSCGRG00001010957) #16	Armh3 (ENSCGRG00001015570) #18	Kcnip2 (ENSCGRG00001019478) #19	Oga (ENSCGRG00001020553) #20	Npm3 (ENSCGRG00001013345) #21	Fgf8 (ENSCGRG00001015246) #22	Fbxw4 (ENSCGRG00001003996) #23	Dpcd (ENSCGRG00001005917) #24	Poll (ENSCGRG00001010513) #25	Btrc (ENSCGRG00001015459) #26	Lbx1 (ENSCGRG00001017540) #27	Tlx1 (ENSCGRG00001021053) #29	Kazald1 (ENSCGRG00001000227) #30	Sfxn3 (ENSCGRG00001015591) #31	Pdzd7 (ENSCGRG00001017672) #32	Lzts2 (ENSCGRG00001023049) #33	Twnk (ENSCGRG00001000710) #34	Mrpl43 (ENSCGRG00001003475) #36	Sema4g (ENSCGRG00001007429)	Slf2 (ENSCGRG00001014230)	Pax2 (ENSCGRG00001019089)
Chinese hamster chok1gshd	MODERN SPECIES	212													Tigd2 (ENSCGRG00001011090)	Fam13a (ENSCGRG00001018932)	Nap1l5 (ENSCGRG00001005879)	ENSCGRG00001005763 #22	Herc3 (ENSCGRG00001010680)	Abcg2 (ENSCGRG00001024313)	Ppm1k (ENSCGRG00001022884)	Herc6 (ENSCGRG00001022959)	ENSCGRG00001019283	Lancl2 (ENSCGRG00001024284)	Vopp1 (ENSCGRG00001019904)	ENSCGRG00001011699	ENSCGRG00001010453	ENSCGRG00001004825	ENSCGRG00001002080	ENSCGRG00001001327	ENSCGRG00001001062	ENSCGRG00001024476	ENSCGRG00001001199
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092.b #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Prairie vole	MODERN SPECIES	16	Fbxl15 (ENSMOCG00000022420)	Psd (ENSMOCG00000014904) #7	Nfkb2 (ENSMOCG00000011590) #8	Gbf1 (ENSMOCG00000022834) #9	Pitx3 (ENSMOCG00000012980) #10	Elovl3 (ENSMOCG00000022790) #11	Nolc1 (ENSMOCG00000015232) #13	ENSMOCG00000018283 #14	ENSMOCG00000014044 #14	ENSMOCG00000004202 #15	Hps6 (ENSMOCG00000001347) #16	Armh3 (ENSMOCG00000011932) #18	Kcnip2 (ENSMOCG00000022254) #19	Oga (ENSMOCG00000014392) #20	Npm3 (ENSMOCG00000013601) #21	Fgf8 (ENSMOCG00000021407) #22	Fbxw4 (ENSMOCG00000013178) #23	Dpcd (ENSMOCG00000013756) #24	Poll (ENSMOCG00000006566) #25	Btrc (ENSMOCG00000002451) #26	Lbx1 (ENSMOCG00000018337) #27	Tlx1 (ENSMOCG00000017096) #29	Kazald1 (ENSMOCG00000015994) #30	Sfxn3 (ENSMOCG00000022608) #31	ENSMOCG00000019069 #32	ENSMOCG00000014095 #32	Lzts2 (ENSMOCG00000012162) #33	Twnk (ENSMOCG00000004167) #34	Mrpl43 (ENSMOCG00000008602) #36	Sema4g (ENSMOCG00000004639)	ENSMOCG00000015291
Northern American deer mouse	MODERN SPECIES		Cuedc2 (ENSPEMG00000012762)	Fbxl15 (ENSPEMG00000012550)	Psd (ENSPEMG00000010757) #7	Nfkb2 (ENSPEMG00000014947) #8	Gbf1 (ENSPEMG00000018772) #9	Pitx3 (ENSPEMG00000026373) #10	Elovl3 (ENSPEMG00000000778) #11	ENSPEMG00000026626	Pprc1 (ENSPEMG00000016590) #14	Ldb1 (ENSPEMG00000011489) #15	Hps6 (ENSPEMG00000003992) #16	Armh3 (ENSPEMG00000014466) #18	Kcnip2 (ENSPEMG00000015045) #19	Oga (ENSPEMG00000008883) #20	Npm3 (ENSPEMG00000007731) #21	Fgf8 (ENSPEMG00000012905) #22	Fbxw4 (ENSPEMG00000024901) #23	Dpcd (ENSPEMG00000014479) #24	Poll (ENSPEMG00000006876) #25	Btrc (ENSPEMG00000014260) #26	Lbx1 (ENSPEMG00000026119) #27	Tlx1 (ENSPEMG00000016966) #29	Kazald1 (ENSPEMG00000018686) #30	Sfxn3 (ENSPEMG00000012869) #31	ENSPEMG00000030678	Pdzd7 (ENSPEMG00000004000) #32	Lzts2 (ENSPEMG00000013419) #33	Twnk (ENSPEMG00000013921) #34	Mrpl43 (ENSPEMG00000001510) #36	Sema4g (ENSPEMG00000010019)	Slf2 (ENSPEMG00000018671)
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Suina	ANCESTRAL SPECIES	6	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Pig	MODERN SPECIES	5	CUEDC2 (ENSSSCG00000033359)	FBXL15 (ENSSSCG00000038504)	PSD (ENSSSCG00000010581) #7	NFKB2 (ENSSSCG00000010580) #8	ENSSSCG00000054273	GBF1 (ENSSSCG00000010579) #9	PITX3 (ENSSSCG00000010578) #10	ELOVL3 (ENSSSCG00000010577) #11	NOLC1 (ENSSSCG00000010576) #13	PPRC1 (ENSSSCG00000010575) #14	LDB1 (ENSSSCG00000010574) #15	ARMH3 (ENSSSCG00000010571) #18	KCNIP2 (ENSSSCG00000010570) #19	OGA (ENSSSCG00000010569) #20	NPM3 (ENSSSCG00000010568) #21	FGF8 (ENSSSCG00000036146) #22	FBXW4 (ENSSSCG00000010566) #23	DPCD (ENSSSCG00000010565) #24	POLL (ENSSSCG00000010564) #25	ENSSSCG00000044625	BTRC (ENSSSCG00000010563) #26	LBX1 (ENSSSCG00000022693) #27	TLX1 (ENSSSCG00000010561) #29	KAZALD1 (ENSSSCG00000022429) #30	SFXN3 (ENSSSCG00000022005) #31	ENSSSCG00000053081	ENSSSCG00000010559 #32	LZTS2 (ENSSSCG00000021798) #33	TWNK (ENSSSCG00000030428) #34	MRPL43 (ENSSSCG00000010560) #36	SEMA4G (ENSSSCG00000029533)
Chacoan peccary	MODERN SPECIES	955	C10orf95 (ENSCWAG00000013611)	CUEDC2 (ENSCWAG00000013653)	FBXL15 (ENSCWAG00000013741)	PSD (ENSCWAG00000013816) #7	NFKB2 (ENSCWAG00000014044) #8	GBF1 (ENSCWAG00000014118) #9	PITX3 (ENSCWAG00000014269) #10	ELOVL3 (ENSCWAG00000014311) #11	PPRC1 (ENSCWAG00000014410) #14	LDB1 (ENSCWAG00000015033) #15	HPS6 (ENSCWAG00000015092) #16	ARMH3 (ENSCWAG00000015108) #18	KCNIP2 (ENSCWAG00000015234) #19	OGA (ENSCWAG00000016757) #20	NPM3 (ENSCWAG00000016863) #21	FGF8 (ENSCWAG00000016899) #22	FBXW4 (ENSCWAG00000017072) #23	DPCD (ENSCWAG00000017144) #24	POLL (ENSCWAG00000017186) #25	BTRC (ENSCWAG00000017438) #26	LBX1 (ENSCWAG00000017504) #27	TLX1 (ENSCWAG00000017532) #29	KAZALD1 (ENSCWAG00000017546) #30	SFXN3 (ENSCWAG00000017574) #31	PDZD7 (ENSCWAG00000017620) #32	ENSCWAG00000017773	LZTS2 (ENSCWAG00000017792) #33	TWNK (ENSCWAG00000017826) #34	MRPL43 (ENSCWAG00000017917) #36	SEMA4G (ENSCWAG00000017948)	SLF2 (ENSCWAG00000017985)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Sperm whale	MODERN SPECIES	619															NPM3 (ENSPCTG00005014995) #21	FGF8 (ENSPCTG00005015052) #22
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Dolphin	MODERN SPECIES	582									NOLC1 (ENSTTRG00000014974) #13	PPRC1 (ENSTTRG00000014966) #14	ENSTTRG00000014960 #15	ARMH3 (ENSTTRG00000014955) #18	KCNIP2 (ENSTTRG00000014952) #19	OGA (ENSTTRG00000014946) #20	ENSTTRG00000014942	FGF8 (ENSTTRG00000014939) #22	FBXW4 (ENSTTRG00000014933) #23	DPCD (ENSTTRG00000014929) #24	POLL (ENSTTRG00000014923) #25	BTRC (ENSTTRG00000014908) #26	LBX1 (ENSTTRG00000014899) #27
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00960000190004	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00950000183143.c.a.p.a.a	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Narwhal	MODERN SPECIES	311	PSD (ENSMMNG00015013097) #7	NFKB2 (ENSMMNG00015013070) #8	GBF1 (ENSMMNG00015013050) #9	PITX3 (ENSMMNG00015013029) #10	ELOVL3 (ENSMMNG00015013018) #11	ENSMMNG00015013008	ENSMMNG00015013002	NOLC1 (ENSMMNG00015012973) #13	PPRC1 (ENSMMNG00015012955) #14	LDB1 (ENSMMNG00015012934) #15	HPS6 (ENSMMNG00015012924) #16	ARMH3 (ENSMMNG00015012888) #18	KCNIP2 (ENSMMNG00015012789) #19	OGA (ENSMMNG00015012693) #20	NPM3 (ENSMMNG00015012666) #21	FGF8 (ENSMMNG00015012625) #22	FBXW4 (ENSMMNG00015012596) #23	DPCD (ENSMMNG00015012580) #24	POLL (ENSMMNG00015012562) #25	ENSMMNG00015012545	BTRC (ENSMMNG00015012491) #26	LBX1 (ENSMMNG00015012454) #27	ENSMMNG00015012448	TLX1 (ENSMMNG00015012435) #29	KAZALD1 (ENSMMNG00015012419) #30	SFXN3 (ENSMMNG00015012374) #31	PDZD7 (ENSMMNG00015012332) #32	LZTS2 (ENSMMNG00015012307) #33	TWNK (ENSMMNG00015012283) #34	MRPL43 (ENSMMNG00015012273) #36	SEMA4G (ENSMMNG00015012260)
Beluga whale	MODERN SPECIES	65	PSD (ENSDLEG00000010100) #7	NFKB2 (ENSDLEG00000010672) #8	GBF1 (ENSDLEG00000010758) #9	PITX3 (ENSDLEG00000011013) #10	ELOVL3 (ENSDLEG00000011030) #11	ENSDLEG00000011076	NOLC1 (ENSDLEG00000011092) #13	ENSDLEG00000011138	PPRC1 (ENSDLEG00000011163) #14	LDB1 (ENSDLEG00000011231) #15	HPS6 (ENSDLEG00000011254) #16	ARMH3 (ENSDLEG00000011308) #18	KCNIP2 (ENSDLEG00000011996) #19	MGEA5 (ENSDLEG00000012761) #20	NPM3 (ENSDLEG00000014430) #21	FGF8 (ENSDLEG00000014445) #22	FBXW4 (ENSDLEG00000014542) #23	DPCD (ENSDLEG00000014637) #24	POLL (ENSDLEG00000014662) #25	BTRC (ENSDLEG00000014853) #26	ENSDLEG00000016243	LBX1 (ENSDLEG00000016256) #27	ENSDLEG00000016263	TLX1 (ENSDLEG00000016266) #29	KAZALD1 (ENSDLEG00000016276) #30	SFXN3 (ENSDLEG00000016287) #31	ENSDLEG00000016313 #32	ENSDLEG00000016332 #32	LZTS2 (ENSDLEG00000016343) #33	TWNK (ENSDLEG00000016357) #34	MRPL43 (ENSDLEG00000016373) #36
Vaquita	MODERN SPECIES	7	CUEDC2 (ENSPSNG00000017566)	FBXL15 (ENSPSNG00000017495)	PSD (ENSPSNG00000017329) #7	NFKB2 (ENSPSNG00000017232) #8	GBF1 (ENSPSNG00000017028) #9	PITX3 (ENSPSNG00000016915) #10	ELOVL3 (ENSPSNG00000016876) #11	NOLC1 (ENSPSNG00000016800) #13	PPRC1 (ENSPSNG00000016660) #14	LDB1 (ENSPSNG00000016526) #15	HPS6 (ENSPSNG00000016490) #16	ARMH3 (ENSPSNG00000016447) #18	KCNIP2 (ENSPSNG00000015521) #19	OGA (ENSPSNG00000015199) #20	NPM3 (ENSPSNG00000015111) #21	FGF8 (ENSPSNG00000014763) #22	FBXW4 (ENSPSNG00000014655) #23	DPCD (ENSPSNG00000014573) #24	POLL (ENSPSNG00000014325) #25	ENSPSNG00000014239	BTRC (ENSPSNG00000013992) #26	LBX1 (ENSPSNG00000013867) #27	ENSPSNG00000013837	TLX1 (ENSPSNG00000013783) #29	KAZALD1 (ENSPSNG00000013727) #30	SFXN3 (ENSPSNG00000013687) #31	ENSPSNG00000013625 #32	ENSPSNG00000013544 #32	LZTS2 (ENSPSNG00000013492) #33	TWNK (ENSPSNG00000013395) #34	MRPL43 (ENSPSNG00000013369) #36
Blue whale	MODERN SPECIES	7	FBXL15 (ENSBMSG00010015838)	PSD (ENSBMSG00010015899) #7	ENSBMSG00010016052 #8	GBF1 (ENSBMSG00010016085) #9	PITX3 (ENSBMSG00010016125) #10	ELOVL3 (ENSBMSG00010016149) #11	NOLC1 (ENSBMSG00010016181) #13	ENSBMSG00010016224	PPRC1 (ENSBMSG00010016252) #14	LDB1 (ENSBMSG00010016310) #15	HPS6 (ENSBMSG00010016356) #16	ARMH3 (ENSBMSG00010016376) #18	KCNIP2 (ENSBMSG00010016543) #19	OGA (ENSBMSG00010018215) #20	NPM3 (ENSBMSG00010018271) #21	FGF8 (ENSBMSG00010018314) #22	FBXW4 (ENSBMSG00010018485) #23	DPCD (ENSBMSG00010018596) #24	POLL (ENSBMSG00010018641) #25	BTRC (ENSBMSG00010018955) #26	ENSBMSG00010019090	LBX1 (ENSBMSG00010019122) #27	TLX1 (ENSBMSG00010019148) #29	KAZALD1 (ENSBMSG00010019182) #30	SFXN3 (ENSBMSG00010019238) #31	PDZD7 (ENSBMSG00010019325) #32	LZTS2 (ENSBMSG00010019532) #33	TWNK (ENSBMSG00010019580) #34	MRPL43 (ENSBMSG00010019656) #36	SEMA4G (ENSBMSG00010019680)	SLF2 (ENSBMSG00010019778)
Pecora	ANCESTRAL SPECIES	12	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Percora_a	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Bovidae	ANCESTRAL SPECIES	24	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Bovinae	ANCESTRAL SPECIES	22	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
American bison	MODERN SPECIES	3316	FBXL15 (ENSBBBG00000022406)	PSD (ENSBBBG00000022390) #7	ENSBBBG00000022351	NFKB2 (ENSBBBG00000005894) #8	GBF1 (ENSBBBG00000022275) #9	PITX3 (ENSBBBG00000022213) #10	ELOVL3 (ENSBBBG00000022200) #11	NOLC1 (ENSBBBG00000005854) #13	PPRC1 (ENSBBBG00000007281) #14	LDB1 (ENSBBBG00000005829) #15	HPS6 (ENSBBBG00000022074) #16	ARMH3 (ENSBBBG00000007684) #18	KCNIP2 (ENSBBBG00000022027) #19	OGA (ENSBBBG00000005781) #20	NPM3 (ENSBBBG00000021685) #21	FGF8 (ENSBBBG00000005761) #22	FBXW4 (ENSBBBG00000021667) #23	DPCD (ENSBBBG00000021651) #24	POLL (ENSBBBG00000021635) #25	BTRC (ENSBBBG00000021525) #26	LBX1 (ENSBBBG00000021437) #27	TLX1 (ENSBBBG00000021434) #29	KAZALD1 (ENSBBBG00000021426) #30	SFXN3 (ENSBBBG00000021411) #31	PDZD7 (ENSBBBG00000021381) #32	LZTS2 (ENSBBBG00000005695) #33	TWNK (ENSBBBG00000008401) #34	MRPL43 (ENSBBBG00000021273) #36	SEMA4G (ENSBBBG00000007106)	SLF2 (ENSBBBG00000021234)	PAX2 (ENSBBBG00000021192)
Bos	ANCESTRAL SPECIES	23	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Bos_b	ANCESTRAL SPECIES	23	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Hybrid Bos Indicus	MODERN SPECIES	18	CUEDC2 (ENSBIXG00005012994)	FBXL15 (ENSBIXG00005012972)	PSD (ENSBIXG00005012950) #7	NFKB2 (ENSBIXG00005012914) #8	GBF1 (ENSBIXG00005012824) #9	PITX3 (ENSBIXG00005012731) #10	ELOVL3 (ENSBIXG00005001400) #11	NOLC1 (ENSBIXG00005005482) #13	PPRC1 (ENSBIXG00005012646) #14	LDB1 (ENSBIXG00005012537) #15	HPS6 (ENSBIXG00005000333) #16	ARMH3 (ENSBIXG00005012509) #18	KCNIP2 (ENSBIXG00005012451) #19	OGA (ENSBIXG00005001256) #20	NPM3 (ENSBIXG00005012095) #21	FGF8 (ENSBIXG00005012077) #22	FBXW4 (ENSBIXG00005012014) #23	ENSBIXG00005001225	DPCD (ENSBIXG00005011989) #24	POLL (ENSBIXG00005000418) #25	BTRC (ENSBIXG00005011868) #26	LBX1 (ENSBIXG00005011727) #27	TLX1 (ENSBIXG00005001152) #29	KAZALD1 (ENSBIXG00005011702) #30	SFXN3 (ENSBIXG00005011674) #31	PDZD7 (ENSBIXG00005011644) #32	LZTS2 (ENSBIXG00005001135) #33	SEMA4G (ENSBIXG00005011547)	MRPL43 (ENSBIXG00005011491) #36	SLF2 (ENSBIXG00005011450)	PAX2 (ENSBIXG00005011389)
Cow	MODERN SPECIES	18	CUEDC2 (ENSBTAG00000002501)	FBXL15 (ENSBTAG00000002500)	PSD (ENSBTAG00000003580) #7	NFKB2 (ENSBTAG00000006017) #8	GBF1 (ENSBTAG00000006014) #9	PITX3 (ENSBTAG00000015702) #10	ELOVL3 (ENSBTAG00000015700) #11	NOLC1 (ENSBTAG00000007435) #13	PPRC1 (ENSBTAG00000007427) #14	LDB1 (ENSBTAG00000005780) #15	HPS6 (ENSBTAG00000021942) #16	ARMH3 (ENSBTAG00000013120) #18	KCNIP2 (ENSBTAG00000016343) #19	OGA (ENSBTAG00000016336) #20	NPM3 (ENSBTAG00000016335) #21	FGF8 (ENSBTAG00000001530) #22	ENSBTAG00000053939	FBXW4 (ENSBTAG00000003579) #23	DPCD (ENSBTAG00000003578) #24	POLL (ENSBTAG00000003576) #25	BTRC (ENSBTAG00000007476) #26	LBX1 (ENSBTAG00000002261) #27	TLX1 (ENSBTAG00000011080) #29	KAZALD1 (ENSBTAG00000011489) #30	SFXN3 (ENSBTAG00000005015) #31	ENSBTAG00000016928 #32	ENSBTAG00000039834 #32	LZTS2 (ENSBTAG00000003298) #33	TWNK (ENSBTAG00000003296) #34	MRPL43 (ENSBTAG00000003294) #36	SEMA4G (ENSBTAG00000018604)
Bos_a	ANCESTRAL SPECIES	17	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Wild yak	MODERN SPECIES	124	CUEDC2 (ENSBMUG00000001561)	FBXL15 (ENSBMUG00000001578)	PSD (ENSBMUG00000001599) #7	NFKB2 (ENSBMUG00000001725) #8	GBF1 (ENSBMUG00000001789) #9	PITX3 (ENSBMUG00000001811) #10	ELOVL3 (ENSBMUG00000001815) #11	NOLC1 (ENSBMUG00000001853) #13	PPRC1 (ENSBMUG00000001946) #14	LDB1 (ENSBMUG00000001990) #15	HPS6 (ENSBMUG00000002004) #16	ARMH3 (ENSBMUG00000002100) #18	KCNIP2 (ENSBMUG00000002276) #19	OGA (ENSBMUG00000002507) #20	NPM3 (ENSBMUG00000002562) #21	FGF8 (ENSBMUG00000002582) #22	FBXW4 (ENSBMUG00000002636) #23	DPCD (ENSBMUG00000002662) #24	POLL (ENSBMUG00000002781) #25	BTRC (ENSBMUG00000002953) #26	TLX1 (ENSBMUG00000002998) #29	ENSBMUG00000003033 #30	SFXN3 (ENSBMUG00000003051) #31	PDZD7 (ENSBMUG00000003120) #32	LZTS2 (ENSBMUG00000003163) #33	TWNK (ENSBMUG00000003170) #34	MRPL43 (ENSBMUG00000003186) #36	SEMA4G (ENSBMUG00000003213)	SLF2 (ENSBMUG00000003264)	PAX2 (ENSBMUG00000003356)	HIF1AN (ENSBMUG00000003393)
Domestic yak	MODERN SPECIES	17	PSD (ENSBGRG00000026193) #7	NFKB2 (ENSBGRG00000026174) #8	GBF1 (ENSBGRG00000026160) #9	PITX3 (ENSBGRG00000026147) #10	ELOVL3 (ENSBGRG00000026140) #11	ENSBGRG00000026136	NOLC1 (ENSBGRG00000026111) #13	PPRC1 (ENSBGRG00000026069) #14	LDB1 (ENSBGRG00000026032) #15	HPS6 (ENSBGRG00000026028) #16	ARMH3 (ENSBGRG00000026018) #18	ENSBGRG00000026004	KCNIP2 (ENSBGRG00000025831) #19	OGA (ENSBGRG00000025769) #20	NPM3 (ENSBGRG00000025751) #21	FGF8 (ENSBGRG00000025705) #22	FBXW4 (ENSBGRG00000025687) #23	DPCD (ENSBGRG00000025670) #24	POLL (ENSBGRG00000025605) #25	BTRC (ENSBGRG00000025472) #26	LBX1 (ENSBGRG00000025446) #27	TLX1 (ENSBGRG00000025436) #29	KAZALD1 (ENSBGRG00000025398) #30	SFXN3 (ENSBGRG00000025373) #31	PDZD7 (ENSBGRG00000025335) #32	LZTS2 (ENSBGRG00000025304) #33	TWNK (ENSBGRG00000025268) #34	MRPL43 (ENSBGRG00000025253) #36	SEMA4G (ENSBGRG00000025220)	SLF2 (ENSBGRG00000025048)	ENSBGRG00000024942
Caprinae	ANCESTRAL SPECIES	19	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Rambouillet Sheep	MODERN SPECIES	14	CUEDC2 (ENSOARG00020025536)	FBXL15 (ENSOARG00020025531)	PSD (ENSOARG00020025517) #7	NFKB2 (ENSOARG00020025505) #8	GBF1 (ENSOARG00020025489) #9	PITX3 (ENSOARG00020025475) #10	ELOVL3 (ENSOARG00020025469) #11	NOLC1 (ENSOARG00020025460) #13	PPRC1 (ENSOARG00020025416) #14	LDB1 (ENSOARG00020025397) #15	HPS6 (ENSOARG00020025382) #16	ARMH3 (ENSOARG00020025366) #18	KCNIP2 (ENSOARG00020025029) #19	OGA (ENSOARG00020024941) #20	NPM3 (ENSOARG00020024924) #21	FGF8 (ENSOARG00020024835) #22	ENSOARG00020024820	FBXW4 (ENSOARG00020024790) #23	DPCD (ENSOARG00020024779) #24	POLL (ENSOARG00020024664) #25	BTRC (ENSOARG00020024573) #26	LBX1 (ENSOARG00020024551) #27	TLX1 (ENSOARG00020024541) #29	KAZALD1 (ENSOARG00020024525) #30	SFXN3 (ENSOARG00020024496) #31	ENSOARG00020024454 #32	LZTS2 (ENSOARG00020024436) #33	TWNK (ENSOARG00020024387) #34	MRPL43 (ENSOARG00020024355) #36	SEMA4G (ENSOARG00020024295)	SLF2 (ENSOARG00020024229)
Goat	MODERN SPECIES	18	FBXL15 (ENSCHIG00000017809)	PSD (ENSCHIG00000016284) #7	NFKB2 (ENSCHIG00000019967) #8	GBF1 (ENSCHIG00000006795) #9	PITX3 (ENSCHIG00000005050) #10	ELOVL3 (ENSCHIG00000020567) #11	NOLC1 (ENSCHIG00000016755) #13	PPRC1 (ENSCHIG00000011471) #14	LDB1 (ENSCHIG00000012111) #15	ENSCHIG00000016117	HPS6 (ENSCHIG00000002581) #16	ARMH3 (ENSCHIG00000021008) #18	KCNIP2 (ENSCHIG00000023969) #19	OGA (ENSCHIG00000012695) #20	ENSCHIG00000024055 #21	FGF8 (ENSCHIG00000016976) #22	FBXW4 (ENSCHIG00000018380) #23	DPCD (ENSCHIG00000020911) #24	POLL (ENSCHIG00000003400) #25	BTRC (ENSCHIG00000016955) #26	LBX1 (ENSCHIG00000023740) #27	TLX1 (ENSCHIG00000017143) #29	KAZALD1 (ENSCHIG00000020364) #30	SFXN3 (ENSCHIG00000007598) #31	PDZD7 (ENSCHIG00000003600) #32	LZTS2 (ENSCHIG00000017763) #33	TWNK (ENSCHIG00000010638) #34	MRPL43 (ENSCHIG00000023474) #36	SEMA4G (ENSCHIG00000017686)	SLF2 (ENSCHIG00000020908)	PAX2 (ENSCHIG00000026895)
Siberian musk deer	MODERN SPECIES	1162	CUEDC2 (ENSMMSG00000023534)	FBXL15 (ENSMMSG00000023546)	PSD (ENSMMSG00000023561) #7	NFKB2 (ENSMMSG00000023577) #8	GBF1 (ENSMMSG00000023605) #9	PITX3 (ENSMMSG00000023635) #10	ELOVL3 (ENSMMSG00000023638) #11	NOLC1 (ENSMMSG00000023644) #13	PPRC1 (ENSMMSG00000023667) #14	LDB1 (ENSMMSG00000023714) #15	HPS6 (ENSMMSG00000023722) #16	ARMH3 (ENSMMSG00000023729) #18	KCNIP2 (ENSMMSG00000023762) #19	OGA (ENSMMSG00000023879) #20	NPM3 (ENSMMSG00000023905) #21	FGF8 (ENSMMSG00000016398) #22	FBXW4 (ENSMMSG00000016591) #23	DPCD (ENSMMSG00000016659) #24	POLL (ENSMMSG00000016722) #25	BTRC (ENSMMSG00000016899) #26	ENSMMSG00000017075	ENSMMSG00000017086	LBX1 (ENSMMSG00000017109) #27	ENSMMSG00000017131	TLX1 (ENSMMSG00000017162) #29	KAZALD1 (ENSMMSG00000017194) #30	SFXN3 (ENSMMSG00000017226) #31	PDZD7 (ENSMMSG00000017297) #32	LZTS2 (ENSMMSG00000017542) #33	TWNK (ENSMMSG00000017581) #34	MRPL43 (ENSMMSG00000017635) #36
Yarkand deer	MODERN SPECIES	6	FBXL15 (ENSCHYG00000013637)	PSD (ENSCHYG00000013510) #7	NFKB2 (ENSCHYG00000013218) #8	ENSCHYG00000013154	GBF1 (ENSCHYG00000012906) #9	PITX3 (ENSCHYG00000012861) #10	ELOVL3 (ENSCHYG00000012788) #11	NOLC1 (ENSCHYG00000012710) #13	PPRC1 (ENSCHYG00000012117) #14	LDB1 (ENSCHYG00000011992) #15	HPS6 (ENSCHYG00000011978) #16	ARMH3 (ENSCHYG00000011524) #18	KCNIP2 (ENSCHYG00000011315) #19	OGA (ENSCHYG00000011095) #20	NPM3 (ENSCHYG00000011000) #21	FGF8 (ENSCHYG00000010585) #22	FBXW4 (ENSCHYG00000010417) #23	DPCD (ENSCHYG00000010353) #24	POLL (ENSCHYG00000010092) #25	BTRC (ENSCHYG00000009464) #26	LBX1 (ENSCHYG00000009391) #27	TLX1 (ENSCHYG00000009316) #29	KAZALD1 (ENSCHYG00000009247) #30	SFXN3 (ENSCHYG00000008801) #31	PDZD7 (ENSCHYG00000008700) #32	LZTS2 (ENSCHYG00000008636) #33	TWNK (ENSCHYG00000008578) #34	MRPL43 (ENSCHYG00000008553) #36	SEMA4G (ENSCHYG00000008501)	SLF2 (ENSCHYG00000008313)	PAX2 (ENSCHYG00000008121)
Camelidae	ANCESTRAL SPECIES	4	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Arabian camel	MODERN SPECIES	2	FBXL15 (ENSCDRG00005014048)	PSD (ENSCDRG00005014081) #7	NFKB2 (ENSCDRG00005014133) #8	GBF1 (ENSCDRG00005014219) #9	PITX3 (ENSCDRG00005014430) #10	ELOVL3 (ENSCDRG00005014459) #11	ENSCDRG00005014525	NOLC1 (ENSCDRG00005014563) #13	PPRC1 (ENSCDRG00005014648) #14	LDB1 (ENSCDRG00005014831) #15	HPS6 (ENSCDRG00005014897) #16	ARMH3 (ENSCDRG00005014932) #18	KCNIP2 (ENSCDRG00005015279) #19	OGA (ENSCDRG00005017195) #20	NPM3 (ENSCDRG00005017294) #21	FGF8 (ENSCDRG00005017350) #22	FBXW4 (ENSCDRG00005017631) #23	DPCD (ENSCDRG00005017701) #24	POLL (ENSCDRG00005017726) #25	BTRC (ENSCDRG00005017970) #26	LBX1 (ENSCDRG00005018112) #27	TLX1 (ENSCDRG00005018131) #29	KAZALD1 (ENSCDRG00005018151) #30	SFXN3 (ENSCDRG00005018164) #31	ENSCDRG00005018196 #32	ENSCDRG00005018229 #32	LZTS2 (ENSCDRG00005018247) #33	TWNK (ENSCDRG00005018275) #34	MRPL43 (ENSCDRG00005018344) #36	SEMA4G (ENSCDRG00005018391)	SLF2 (ENSCDRG00005018469)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Greater horseshoe bat	MODERN SPECIES	7	FBXL15 (ENSRFEG00010017762)	PSD (ENSRFEG00010017833) #7	NFKB2 (ENSRFEG00010017892) #8	GBF1 (ENSRFEG00010017963) #9	PITX3 (ENSRFEG00010018052) #10	ELOVL3 (ENSRFEG00010018094) #11	NOLC1 (ENSRFEG00010018127) #13	PPRC1 (ENSRFEG00010018145) #14	LDB1 (ENSRFEG00010018232) #15	HPS6 (ENSRFEG00010018300) #16	ARMH3 (ENSRFEG00010005361) #18	ENSRFEG00010005540	KCNIP2 (ENSRFEG00010005717) #19	OGA (ENSRFEG00010005973) #20	NPM3 (ENSRFEG00010006055) #21	FGF8 (ENSRFEG00010006132) #22	FBXW4 (ENSRFEG00010006255) #23	DPCD (ENSRFEG00010006295) #24	POLL (ENSRFEG00010006332) #25	BTRC (ENSRFEG00010006446) #26	ENSRFEG00010006625	LBX1 (ENSRFEG00010006637) #27	ENSRFEG00010006650	TLX1 (ENSRFEG00010006681) #29	KAZALD1 (ENSRFEG00010006705) #30	SFXN3 (ENSRFEG00010006745) #31	PDZD7 (ENSRFEG00010006815) #32	ENSRFEG00010006849	LZTS2 (ENSRFEG00010006867) #33	TWNK (ENSRFEG00010006903) #34	MRPL43 (ENSRFEG00010006991) #36
Microbat	MODERN SPECIES	1099	CUEDC2 (ENSMLUG00000006328)	FBXL15 (ENSMLUG00000006312)	PSD (ENSMLUG00000006298) #7	NFKB2 (ENSMLUG00000006287) #8	GBF1 (ENSMLUG00000006247) #9	ENSMLUG00000028577	PITX3 (ENSMLUG00000023193) #10	ELOVL3 (ENSMLUG00000028990) #11	NOLC1 (ENSMLUG00000001726) #13	PPRC1 (ENSMLUG00000006217) #14	LDB1 (ENSMLUG00000009237) #15	ARMH3 (ENSMLUG00000004996) #18	KCNIP2 (ENSMLUG00000004987) #19	OGA (ENSMLUG00000004970) #20	NPM3 (ENSMLUG00000004961) #21	FGF8 (ENSMLUG00000004959) #22	FBXW4 (ENSMLUG00000004952) #23	DPCD (ENSMLUG00000004947) #24	POLL (ENSMLUG00000004944) #25	BTRC (ENSMLUG00000004932) #26
Megabat	MODERN SPECIES	3921								NOLC1 (ENSPVAG00000004050) #13	PPRC1 (ENSPVAG00000004048) #14	LDB1 (ENSPVAG00000004047) #15	HPS6 (ENSPVAG00000004046) #16	ARMH3 (ENSPVAG00000004043) #18	KCNIP2 (ENSPVAG00000004042) #19	OGA (ENSPVAG00000004041) #20	NPM3 (ENSPVAG00000004038) #21	FGF8 (ENSPVAG00000004035) #22
Equus	ANCESTRAL SPECIES	9	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925.l #9	ENSGT01050000244965.a.d #11	ENSGT00940000156925.k #9	ENSGT00940000161801 #10	ENSGT01050000244965.a.c #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Donkey	MODERN SPECIES	11	ENSEASG00005027010 #11	ENSEASG00005038682 #10	ENSEASG00005037872 #11	ENSEASG00005030491 #10	ENSEASG00005037516 #11	ENSEASG00005034292 #10	ENSEASG00005010383 #11	NOLC1 (ENSEASG00005007519) #13	PPRC1 (ENSEASG00005007583) #14	LDB1 (ENSEASG00005007592) #15	HPS6 (ENSEASG00005033362) #16	ARMH3 (ENSEASG00005007687) #18	KCNIP2 (ENSEASG00005007921) #19	OGA (ENSEASG00005008004) #20	NPM3 (ENSEASG00005008834) #21	FGF8 (ENSEASG00005008843) #22	FBXW4 (ENSEASG00005008860) #23	DPCD (ENSEASG00005008874) #24	POLL (ENSEASG00005008879) #25	BTRC (ENSEASG00005008887) #26	LBX1 (ENSEASG00005034916) #27	TLX1 (ENSEASG00005008902) #29	KAZALD1 (ENSEASG00005008906) #30	SFXN3 (ENSEASG00005008915) #31	PDZD7 (ENSEASG00005038524) #32	LZTS2 (ENSEASG00005008920) #33	TWNK (ENSEASG00005008922) #34	MRPL43 (ENSEASG00005008925) #36	ENSEASG00005030511	SEMA4G (ENSEASG00005008933)	SLF2 (ENSEASG00005008951)
Horse	MODERN SPECIES		MFSD13A (ENSECAG00000014757)	PSD (ENSECAG00000007172) #7	FBXL15 (ENSECAG00000000576)	NFKB2 (ENSECAG00000019593) #8	GBF1 (ENSECAG00000023593) #9	ENSECAG00000047204 #9	PITX3 (ENSECAG00000022294) #10	ELOVL3 (ENSECAG00000023578) #11	NOLC1 (ENSECAG00000052236) #13	PPRC1 (ENSECAG00000009482) #14	LDB1 (ENSECAG00000012948) #15	HPS6 (ENSECAG00000004595) #16	ARMH3 (ENSECAG00000020347) #18	OGA (ENSECAG00000018731) #20	NPM3 (ENSECAG00000007524) #21	FGF8 (ENSECAG00000037372) #22	FBXW4 (ENSECAG00000020477) #23	DPCD (ENSECAG00000009848) #24	POLL (ENSECAG00000015282) #25	BTRC (ENSECAG00000022888) #26	LBX1 (ENSECAG00000032593) #27	TLX1 (ENSECAG00000013342) #29	KAZALD1 (ENSECAG00000013608) #30	SFXN3 (ENSECAG00000019285) #31	PDZD7 (ENSECAG00000012183) #32	LZTS2 (ENSECAG00000013288) #33	TWNK (ENSECAG00000017734) #34	MRPL43 (ENSECAG00000038363) #36	SEMA4G (ENSECAG00000022499)	SLF2 (ENSECAG00000011200)	PAX2 (ENSECAG00000021123)
Carnivora	ANCESTRAL SPECIES	16	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Caniformia	ANCESTRAL SPECIES	13	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Canidae	ANCESTRAL SPECIES	16	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Dog	MODERN SPECIES	20	CUEDC2 (ENSCAFG00845024377)	FBXL15 (ENSCAFG00845024340)	PSD (ENSCAFG00845023806) #7	NFKB2 (ENSCAFG00845023626) #8	GBF1 (ENSCAFG00845023390) #9	PITX3 (ENSCAFG00845023314) #10	ELOVL3 (ENSCAFG00845023260) #11	NOLC1 (ENSCAFG00845023156) #13	PPRC1 (ENSCAFG00845022994) #14	LDB1 (ENSCAFG00845022765) #15	HPS6 (ENSCAFG00845022716) #16	ARMH3 (ENSCAFG00845022019) #18	KCNIP2 (ENSCAFG00845021527) #19	OGA (ENSCAFG00845021307) #20	OGA (ENSCAFG00845021211) #21	FGF8 (ENSCAFG00845021086) #22	FBXW4 (ENSCAFG00845020929) #23	DPCD (ENSCAFG00845020872) #24	POLL (ENSCAFG00845020759) #25	BTRC (ENSCAFG00845020497) #26	LBX1 (ENSCAFG00845020416) #27	TLX1 (ENSCAFG00845020381) #29	KAZALD1 (ENSCAFG00845020241) #30	SFXN3 (ENSCAFG00845020173) #31	PDZD7 (ENSCAFG00845019707) #32	LZTS2 (ENSCAFG00845019571) #33	TWNK (ENSCAFG00845019518) #34	MRPL43 (ENSCAFG00845019486) #36	SEMA4G (ENSCAFG00845019254)	SLF2 (ENSCAFG00845018854)	PAX2 (ENSCAFG00845018449)
Dingo	MODERN SPECIES	165	CUEDC2 (ENSCAFG00020010222)	FBXL15 (ENSCAFG00020010220)	PSD (ENSCAFG00020010215) #7	NFKB2 (ENSCAFG00020010204) #8	ENSCAFG00020010159 #9	ENSCAFG00020010157 #9	PITX3 (ENSCAFG00020010150) #10	ELOVL3 (ENSCAFG00020010148) #11	NOLC1 (ENSCAFG00020010146) #13	PPRC1 (ENSCAFG00020010030) #14	LDB1 (ENSCAFG00020010016) #15	ARMH3 (ENSCAFG00020009246) #18	KCNIP2 (ENSCAFG00020009192) #19	OGA (ENSCAFG00020009186) #20	NPM3 (ENSCAFG00020009185) #21	FGF8 (ENSCAFG00020009181) #22	FBXW4 (ENSCAFG00020009166) #23	DPCD (ENSCAFG00020009157) #24	POLL (ENSCAFG00020009154) #25	BTRC (ENSCAFG00020009146) #26	LBX1 (ENSCAFG00020009135) #27	TLX1 (ENSCAFG00020009130) #29	KAZALD1 (ENSCAFG00020009128) #30	SFXN3 (ENSCAFG00020009123) #31	ENSCAFG00020009067 #32	ENSCAFG00020009061 #32	LZTS2 (ENSCAFG00020009057) #33	TWNK (ENSCAFG00020009050) #34	MRPL43 (ENSCAFG00020009048) #36	SEMA4G (ENSCAFG00020009043)	SLF2 (ENSCAFG00020008672)
Red fox	MODERN SPECIES		CUEDC2 (ENSVVUG00000003580)	FBXL15 (ENSVVUG00000003576)	PSD (ENSVVUG00000003561) #7	NFKB2 (ENSVVUG00000002942) #8	GBF1 (ENSVVUG00000002840) #9	PITX3 (ENSVVUG00000002824) #10	ELOVL3 (ENSVVUG00000002813) #11	NOLC1 (ENSVVUG00000002661) #13	LDB1 (ENSVVUG00000002609) #15	PPRC1 (ENSVVUG00000002566) #14	ENSVVUG00000002549	ARMH3 (ENSVVUG00000002381) #18	KCNIP2 (ENSVVUG00000001064) #19	OGA (ENSVVUG00000000965) #20	NPM3 (ENSVVUG00000000945) #21	FGF8 (ENSVVUG00000000784) #22	FBXW4 (ENSVVUG00000000770) #23	DPCD (ENSVVUG00000000749) #24	POLL (ENSVVUG00000000738) #25	BTRC (ENSVVUG00000000703) #26	LBX1 (ENSVVUG00000000689) #27	TLX1 (ENSVVUG00000000649) #29	KAZALD1 (ENSVVUG00000000631) #30	SFXN3 (ENSVVUG00000000615) #31	PDZD7 (ENSVVUG00000000597) #32	LZTS2 (ENSVVUG00000000572) #33	TWNK (ENSVVUG00000000429) #34	MRPL43 (ENSVVUG00000000360) #36	SEMA4G (ENSVVUG00000000341)	SLF2 (ENSVVUG00000000268)	ENSVVUG00000000159
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000160250	ENSGT01100000267139	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Giant Panda	MODERN SPECIES	16	FBXL15 (ENSAMEG00000017780)	PSD (ENSAMEG00000017765) #7	NFKB2 (ENSAMEG00000017735) #8	ENSAMEG00000028274	GBF1 (ENSAMEG00000017700) #9	PITX3 (ENSAMEG00000017698) #10	ELOVL3 (ENSAMEG00000026429) #11	NOLC1 (ENSAMEG00000017687) #13	PPRC1 (ENSAMEG00000017685) #14	LDB1 (ENSAMEG00000017674) #15	HPS6 (ENSAMEG00000020223) #16	ARMH3 (ENSAMEG00000017666) #18	KCNIP2 (ENSAMEG00000017648) #19	OGA (ENSAMEG00000017642) #20	ENSAMEG00000017639 #21	FGF8 (ENSAMEG00000017635) #22	FBXW4 (ENSAMEG00000017630) #23	DPCD (ENSAMEG00000017626) #24	POLL (ENSAMEG00000017616) #25	BTRC (ENSAMEG00000017610) #26	LBX1 (ENSAMEG00000025161) #27	TLX1 (ENSAMEG00000017604) #29	KAZALD1 (ENSAMEG00000017599) #30	SFXN3 (ENSAMEG00000017589) #31	PDZD7 (ENSAMEG00000017588) #32	LZTS2 (ENSAMEG00000017581) #33	TWNK (ENSAMEG00000017575) #34	ENSAMEG00000026650	SEMA4G (ENSAMEG00000017555)	SLF2 (ENSAMEG00000017539)	PAX2 (ENSAMEG00000017523)
Mustelinae	ANCESTRAL SPECIES	29	ENSGT00390000014513.d	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
American mink	MODERN SPECIES	25	FBXL15 (ENSNVIG00000017463)	PSD (ENSNVIG00000017477) #7	NFKB2 (ENSNVIG00000017504) #8	GBF1 (ENSNVIG00000017606) #9	PITX3 (ENSNVIG00000017782) #10	ELOV3 (ENSNVIG00000017791) #11	NOLC1 (ENSNVIG00000017826) #13	PPRC1 (ENSNVIG00000017896) #14	LDB1 (ENSNVIG00000017913) #15	HPS6 (ENSNVIG00000017937) #16	CJ076 (ENSNVIG00000017939) #18	ENSNVIG00000018006	KCIP2 (ENSNVIG00000018034) #19	OGA (ENSNVIG00000018264) #20	NPM3 (ENSNVIG00000018364) #21	FGF8 (ENSNVIG00000018394) #22	FBXW4 (ENSNVIG00000018442) #23	DPCD (ENSNVIG00000018457) #24	POLL (ENSNVIG00000018469) #25	ENSNVIG00000018498 #26	LBX1 (ENSNVIG00000018557) #27	ENSNVIG00000018563	TLX1 (ENSNVIG00000018572) #29	KAZALD1 (ENSNVIG00000018579) #30	SFXN3 (ENSNVIG00000018587) #31	ENSNVIG00000018594 #32	LZTS2 (ENSNVIG00000018615) #33	TWNK (ENSNVIG00000018632) #34	B1AL05 (ENSNVIG00000018655) #36	SEMA4G (ENSNVIG00000018660)	SLF2 (ENSNVIG00000018711)
Ferret	MODERN SPECIES	187	FBXL15 (ENSMPUG00000016872)	ENSMPUG00000016874	PSD (ENSMPUG00000016879) #7	NFKB2 (ENSMPUG00000016882) #8	GBF1 (ENSMPUG00000016883) #9	PITX3 (ENSMPUG00000016885) #10	ELOVL3 (ENSMPUG00000016886) #11	NOLC1 (ENSMPUG00000016887) #13	PPRC1 (ENSMPUG00000016888) #14	LDB1 (ENSMPUG00000016889) #15	HPS6 (ENSMPUG00000020133) #16	ARMH3 (ENSMPUG00000016890) #18	KCNIP2 (ENSMPUG00000016892) #19	OGA (ENSMPUG00000016893) #20	NPM3 (ENSMPUG00000016894) #21	FGF8 (ENSMPUG00000016897) #22	FBXW4 (ENSMPUG00000016906) #23	DPCD (ENSMPUG00000016919) #24	POLL (ENSMPUG00000016920) #25	BTRC (ENSMPUG00000016923) #26	LBX1 (ENSMPUG00000016926) #27	TLX1 (ENSMPUG00000016927) #29	KAZALD1 (ENSMPUG00000016929) #30	SFXN3 (ENSMPUG00000016930) #31	PDZD7 (ENSMPUG00000016931) #32	LZTS2 (ENSMPUG00000016937) #33	TWNK (ENSMPUG00000016941) #34	MRPL43 (ENSMPUG00000016942) #36	SEMA4G (ENSMPUG00000016946)	SLF2 (ENSMPUG00000016953)	ENSMPUG00000016954
Felidae	ANCESTRAL SPECIES	14	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Panthera	ANCESTRAL SPECIES	8	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
leopard	MODERN SPECIES	33	C10orf95 (ENSPPRG00000019037)	CUEDC2 (ENSPPRG00000012133)	FBXL15 (ENSPPRG00000012372)	PSD (ENSPPRG00000016125) #7	NFKB2 (ENSPPRG00000024177) #8	GBF1 (ENSPPRG00000022832) #9	PITX3 (ENSPPRG00000000459) #10	ELOVL3 (ENSPPRG00000000726) #11	NOLC1 (ENSPPRG00000003072) #13	PPRC1 (ENSPPRG00000004274) #14	LDB1 (ENSPPRG00000004903) #15	ARMH3 (ENSPPRG00000006816) #18	KCNIP2 (ENSPPRG00000008687) #19	OGA (ENSPPRG00000012421) #20	ENSPPRG00000012611 #21	FGF8 (ENSPPRG00000013495) #22	FBXW4 (ENSPPRG00000014010) #23	DPCD (ENSPPRG00000014395) #24	POLL (ENSPPRG00000015944) #25	BTRC (ENSPPRG00000019213) #26	LBX1 (ENSPPRG00000019906) #27	TLX1 (ENSPPRG00000021686) #29	KAZALD1 (ENSPPRG00000025091) #30	SFXN3 (ENSPPRG00000025064) #31	PDZD7 (ENSPPRG00000024966) #32	LZTS2 (ENSPPRG00000024851) #33	TWNK (ENSPPRG00000024792) #34	MRPL43 (ENSPPRG00000024398) #36	SEMA4G (ENSPPRG00000023921)	SLF2 (ENSPPRG00000023640)	PAX2 (ENSPPRG00000022822)
lion	MODERN SPECIES	11	FBXL15 (ENSPLOG00000017839)	PSD (ENSPLOG00000017905) #7	NFKB2 (ENSPLOG00000018109) #8	GBF1 (ENSPLOG00000018201) #9	PITX3 (ENSPLOG00000018227) #10	ELOVL3 (ENSPLOG00000018268) #11	NOLC1 (ENSPLOG00000018322) #13	PPRC1 (ENSPLOG00000018611) #14	LDB1 (ENSPLOG00000018677) #15	HPS6 (ENSPLOG00000018787) #16	ARMH3 (ENSPLOG00000018843) #18	ENSPLOG00000019012	KCNIP2 (ENSPLOG00000004987) #19	OGA (ENSPLOG00000005085) #20	NPM3 (ENSPLOG00000005157) #21	FGF8 (ENSPLOG00000005187) #22	FBXW4 (ENSPLOG00000005224) #23	DPCD (ENSPLOG00000005244) #24	POLL (ENSPLOG00000005264) #25	BTRC (ENSPLOG00000005315) #26	LBX1 (ENSPLOG00000005507) #27	TLX1 (ENSPLOG00000005518) #29	KAZALD1 (ENSPLOG00000005533) #30	SFXN3 (ENSPLOG00000005555) #31	ENSPLOG00000005593 #32	LZTS2 (ENSPLOG00000005627) #33	TWNK (ENSPLOG00000005651) #34	ENSPLOG00000005682	SEMA4G (ENSPLOG00000005704)	SLF2 (ENSPLOG00000005756)	PAX2 (ENSPLOG00000005810)
Cat	MODERN SPECIES	242	MFSD13A (ENSFCAG00000023881)	CD2H10orf95 (ENSFCAG00000042728)	CUEDC2 (ENSFCAG00000001245)	FBXL15 (ENSFCAG00000001244)	PSD (ENSFCAG00000001243) #7	NFKB2 (ENSFCAG00000001242) #8	PITX3 (ENSFCAG00000026758) #10	GBF1 (ENSFCAG00000001241) #9	PPRC1 (ENSFCAG00000001238) #14	LDB1 (ENSFCAG00000001236) #15	HPS6 (ENSFCAG00000028998) #16	ARMH3 (ENSFCAG00000013244) #18	KCNIP2 (ENSFCAG00000013243) #19	OGA (ENSFCAG00000007179) #20	NPM3 (ENSFCAG00000007178) #21	FGF8 (ENSFCAG00000007177) #22	FBXW4 (ENSFCAG00000015703) #23	DPCD (ENSFCAG00000037081) #24	POLL (ENSFCAG00000015701) #25	BTRC (ENSFCAG00000015700) #26	LBX1 (ENSFCAG00000034106) #27	TLX1 (ENSFCAG00000046742) #29	KAZALD1 (ENSFCAG00000038365) #30	SFXN3 (ENSFCAG00000015697) #31	PDZD7 (ENSFCAG00000015696) #32	LZTS2 (ENSFCAG00000015695) #33	TWNK (ENSFCAG00000015694) #34	ENSFCAG00000015693	SEMA4G (ENSFCAG00000015692)	SLF2 (ENSFCAG00000030202)	PAX2 (ENSFCAG00000011602)
Atlantogenata	ANCESTRAL SPECIES	10	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Xenarthra	ANCESTRAL SPECIES	903											ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000159518 #22
Armadillo	MODERN SPECIES	308										LDB1 (ENSDNOG00000032439) #15	ENSDNOG00000036024	HPS6 (ENSDNOG00000025542) #16	ARMH3 (ENSDNOG00000018889) #18	KCNIP2 (ENSDNOG00000018883) #19	OGA (ENSDNOG00000018879) #20	FGF8 (ENSDNOG00000037724) #22
Afrotheria	ANCESTRAL SPECIES	4	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Afrotheria_a	ANCESTRAL SPECIES	4	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a	ENSGT00940000157412.b
Elephant	MODERN SPECIES	3	CUEDC2 (ENSLAFG00000006828)	FBXL15 (ENSLAFG00000006822)	PSD (ENSLAFG00000006814) #7	NFKB2 (ENSLAFG00000006805) #8	GBF1 (ENSLAFG00000006789) #9	PITX3 (ENSLAFG00000006787) #10	ELOVL3 (ENSLAFG00000006785) #11	NOLC1 (ENSLAFG00000014245) #13	PPRC1 (ENSLAFG00000014232) #14	LDB1 (ENSLAFG00000023028) #15	HPS6 (ENSLAFG00000026941) #16	ARMH3 (ENSLAFG00000016076) #18	KCNIP2 (ENSLAFG00000016066) #19	OGA (ENSLAFG00000016050) #20	NPM3 (ENSLAFG00000023022) #21	FGF8 (ENSLAFG00000028373) #22	FBXW4 (ENSLAFG00000009480) #23	DPCD (ENSLAFG00000009478) #24	POLL (ENSLAFG00000009472) #25	BTRC (ENSLAFG00000017122) #26	LBX1 (ENSLAFG00000012214) #27	TLX1 (ENSLAFG00000004179) #29	ENSLAFG00000030369	KAZALD1 (ENSLAFG00000004171) #30	SFXN3 (ENSLAFG00000012767) #31	ENSLAFG00000026596 #32	ENSLAFG00000032509 #32	LZTS2 (ENSLAFG00000009975) #33	TWNK (ENSLAFG00000015859) #34	MRPL43 (ENSLAFG00000028961) #36	ENSLAFG00000005967
Hyrax	MODERN SPECIES	783													ARMH3 (ENSPCAG00000011786) #18	KCNIP2 (ENSPCAG00000011723) #19	OGA (ENSPCAG00000011547) #20	FGF8 (ENSPCAG00000011483) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Opossum	MODERN SPECIES		FBXL15 (ENSMODG00000011280)	PSD (ENSMODG00000011313) #7	ENSMODG00000049569 #8	GBF1 (ENSMODG00000011370) #9	ENSMODG00000011378 #11	PITX3 (ENSMODG00000045989) #10	NOLC1 (ENSMODG00000011434) #13	ENSMODG00000011467 #14	LDB1 (ENSMODG00000011500) #15	HPS6 (ENSMODG00000049767) #16	ARMH3 (ENSMODG00000011512) #18	ENSMODG00000019596 #12	KCNIP2 (ENSMODG00000011638) #19	OGA (ENSMODG00000011681) #20	NPM3 (ENSMODG00000011689) #21	FGF8 (ENSMODG00000011718) #22	FBXW4 (ENSMODG00000011732) #23	DPCD (ENSMODG00000011742) #24	POLL (ENSMODG00000011757) #25	BTRC (ENSMODG00000011788) #26	ENSMODG00000027979	ENSMODG00000046533	LBX1 (ENSMODG00000044699) #27	TLX1 (ENSMODG00000011900) #29	KAZALD1 (ENSMODG00000011907) #30	SFXN3 (ENSMODG00000011922) #31	ENSMODG00000045652 #32	ENSMODG00000011937 #32	LZTS2 (ENSMODG00000011955) #33	TWNK (ENSMODG00000011966) #34	MRPL43 (ENSMODG00000011975) #36
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.k #31	ENSGT00990000203892	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Tasmanian devil	MODERN SPECIES	1	CUEDC2 (ENSSHAG00000018836)	FBXL15 (ENSSHAG00000028197)	PSD (ENSSHAG00000018843) #7	NFKB2 (ENSSHAG00000018852) #8	GBF1 (ENSSHAG00000018856) #9	PITX3 (ENSSHAG00000027003) #10	ELOVL3 (ENSSHAG00000018892) #11	NOLC1 (ENSSHAG00000002222) #13	ENSSHAG00000003350 #14	LDB1 (ENSSHAG00000004146) #15	HPS6 (ENSSHAG00000020530) #16	ARMH3 (ENSSHAG00000005390) #18	KCNIP2 (ENSSHAG00000026676) #19	OGA (ENSSHAG00000008257) #20	NPM3 (ENSSHAG00000008567) #21	FGF8 (ENSSHAG00000008652) #22	FBXW4 (ENSSHAG00000009269) #23	DPCD (ENSSHAG00000025520) #24	POLL (ENSSHAG00000010289) #25	BTRC (ENSSHAG00000010653) #26	LBX1 (ENSSHAG00000012692) #27	TLX1 (ENSSHAG00000026892) #29	KAZALD1 (ENSSHAG00000031990) #30	SFXN3 (ENSSHAG00000025221) #31	PDZD7 (ENSSHAG00000013654) #32	LZTS2 (ENSSHAG00000013716) #33	MRPL43 (ENSSHAG00000027764) #36	SEMA4G (ENSSHAG00000024320)	ENSSHAG00000001085	PAX2 (ENSSHAG00000014328)	HIF1AN (ENSSHAG00000026157)
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.k #31	ENSGT00990000203892	ENSGT00940000160813	ENSGT00940000158048	ENSGT00950000183039.B.b.b	ENSGT00940000156835	ENSGT00940000172454	ENSGT00940000161316
Wallaby	MODERN SPECIES	1700																FGF8 (ENSMEUG00000007998) #22
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00390000014513	ENSGT00940000160250	ENSGT00940000155061.a.b #7	ENSGT00940000160968 #8	ENSGT00940000156925 #9	ENSGT00940000161801 #10	ENSGT01050000244965.a #11	ENSGT00730000111092 #13	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a.k #31	ENSGT00990000203892	ENSGT00940000160813	ENSGT00940000158048	ENSGT00950000183039.B.b.b	ENSGT00940000156835	ENSGT00940000172454	ENSGT00940000161316
koala	MODERN SPECIES	6	MFSD13A (ENSPCIG00000028991)	CUEDC2 (ENSPCIG00000028992)	FBXL15 (ENSPCIG00000028994)	PSD (ENSPCIG00000028997) #7	NFKB2 (ENSPCIG00000028999) #8	GBF1 (ENSPCIG00000029004) #9	PITX3 (ENSPCIG00000029009) #10	ELOVL3 (ENSPCIG00000029010) #11	NOLC1 (ENSPCIG00000029012) #13	ENSPCIG00000029013 #14	LDB1 (ENSPCIG00000029016) #15	HPS6 (ENSPCIG00000029018) #16	ARMH3 (ENSPCIG00000029021) #18	KCNIP2 (ENSPCIG00000029025) #19	OGA (ENSPCIG00000009619) #20	FGF8 (ENSPCIG00000009616) #22	FBXW4 (ENSPCIG00000029029) #23	DPCD (ENSPCIG00000029028) #24	POLL (ENSPCIG00000029031) #25	BTRC (ENSPCIG00000029037) #26	LBX1 (ENSPCIG00000012981) #27	TLX1 (ENSPCIG00000031947) #29	KAZALD1 (ENSPCIG00000003284) #30	ENSPCIG00000002751 #31	ENSPCIG00000002730	PDZD7 (ENSPCIG00000002702) #32	LZTS2 (ENSPCIG00000002692) #33	TWNK (ENSPCIG00000002680) #34	MRPL43 (ENSPCIG00000031987) #36	SEMA4G (ENSPCIG00000002663)	ENSPCIG00000001129
Common wonbat	MODERN SPECIES	581	CUEDC2 (ENSVURG00010001585)	FBXL15 (ENSVURG00010001595)	PSD (ENSVURG00010001616) #7	NFKB2 (ENSVURG00010001689) #8	GBF1 (ENSVURG00010001734) #9	PITX3 (ENSVURG00010001798) #10	ELOVL3 (ENSVURG00010001812) #11	NOLC1 (ENSVURG00010001912) #13	ENSVURG00010001928 #14	LDB1 (ENSVURG00010001956) #15	HPS6 (ENSVURG00010002006) #16	ARMH3 (ENSVURG00010002048) #18	KCNIP2 (ENSVURG00010002189) #19	OGA (ENSVURG00010002511) #20	NPM3 (ENSVURG00010002534) #21	FGF8 (ENSVURG00010002548) #22	ENSVURG00010002614 #23	DPCD (ENSVURG00010002630) #24	POLL (ENSVURG00010002645) #25	BTRC (ENSVURG00010002745) #26	LBX1 (ENSVURG00010002823) #27	TLX1 (ENSVURG00010002839) #29	KAZALD1 (ENSVURG00010002921) #30	ENSVURG00010002939 #32	LZTS2 (ENSVURG00010002997) #33	TWNK (ENSVURG00010003014) #34	MRPL43 (ENSVURG00010003032) #36	SEMA4G (ENSVURG00010003048)	ENSVURG00010003115	PAX2 (ENSVURG00010003166)	ENSVURG00010003240
Platypus	MODERN SPECIES	7	MFSD13A (ENSOANG00000003445)	CUEDC2 (ENSOANG00000001988)	FBXL15 (ENSOANG00000001987)	PSD (ENSOANG00000044398) #7	NFKB2 (ENSOANG00000006254) #8	GBF1 (ENSOANG00000007818) #9	PITX3 (ENSOANG00000039250) #10	ELOVL3 (ENSOANG00000007823) #11	NOLC1 (ENSOANG00000007824) #13	ENSOANG00000007826 #14	LDB1 (ENSOANG00000007827) #15	ARMH3 (ENSOANG00000007830) #18	KCNIP2 (ENSOANG00000039579) #19	OGA (ENSOANG00000004474) #20	NPM3 (ENSOANG00000039490) #21	FGF8 (ENSOANG00000048473) #22	FBXW4 (ENSOANG00000007313) #23	DPCD (ENSOANG00000045090) #24	POLL (ENSOANG00000007315) #25	BTRC (ENSOANG00000007316) #26	LBX1 (ENSOANG00000044340) #27	TLX1 (ENSOANG00000007318) #29	KAZALD1 (ENSOANG00000047060) #30	SFXN3 (ENSOANG00000007319) #31	PDZD7 (ENSOANG00000007308) #32	LZTS2 (ENSOANG00000046553) #33	ENSOANG00000042089 #34	ENSOANG00000007325 #34	ENSOANG00000007326 #34	ENSOANG00000042676	SEMA4G (ENSOANG00000007328)
Sauria	ANCESTRAL SPECIES	8	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
tuatara	MODERN SPECIES	1056	EXOSC1 (ENSSPUG00000012263)	ENSSPUG00000012251	RRP12 (ENSSPUG00000012221)	ARHGAP19 (ENSSPUG00000012197)	SLIT1 (ENSSPUG00000012148)	ENSSPUG00000012129	ENSSPUG00000012101	ENSSPUG00000012079 #14	ENSSPUG00000012068 #14	LDB1 (ENSSPUG00000012060) #15	ENSSPUG00000012022	ARMH3 (ENSSPUG00000011969) #18	KCNIP2 (ENSSPUG00000011942) #19	OGA (ENSSPUG00000011899) #20	NPM3 (ENSSPUG00000011875) #21	FGF8 (ENSSPUG00000011861) #22	FBXW4 (ENSSPUG00000011804) #23	DPCD (ENSSPUG00000011780) #24	POLL (ENSSPUG00000011763) #25	ENSSPUG00000011646	BTRC (ENSSPUG00000011559) #26	LBX1 (ENSSPUG00000011521) #27	TLX1 (ENSSPUG00000011511) #29	KAZALD1 (ENSSPUG00000011500) #30	SFXN3 (ENSSPUG00000011489) #31	ENSSPUG00000011481	ENSSPUG00000011397 #32	ENSSPUG00000011356 #32	LZTS2 (ENSSPUG00000011340) #33	TWNK (ENSSPUG00000011329) #34	MRPL43 (ENSSPUG00000011319) #36
Episquamata	ANCESTRAL SPECIES	2	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Laterata	ANCESTRAL SPECIES		ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Common wall lizard	MODERN SPECIES	13	EXOSC1 (ENSPMRG00000002866)	ENSPMRG00000002824	RRP12 (ENSPMRG00000002801)	ARHGAP19 (ENSPMRG00000002746)	SLIT1 (ENSPMRG00000001494)	LCOR (ENSPMRG00000001039)	ENSPMRG00000001008	ENSPMRG00000000986	PPRC1 (ENSPMRG00000000943) #14	LDB1 (ENSPMRG00000000892) #15	HPS6 (ENSPMRG00000000861) #16	ARMH3 (ENSPMRG00000000804) #18	KCNIP2 (ENSPMRG00000000777) #19	OGA (ENSPMRG00000000747) #20	NPM3 (ENSPMRG00000000732) #21	FGF8 (ENSPMRG00000000710) #22	ENSPMRG00000000700	FBXW4 (ENSPMRG00000000682) #23	DPCD (ENSPMRG00000000665) #24	POLL (ENSPMRG00000000637) #25	ENSPMRG00000000604	BTRC (ENSPMRG00000000447) #26	LBX1 (ENSPMRG00000000334) #27	TLX1 (ENSPMRG00000000309) #29	KAZALD1 (ENSPMRG00000000257) #30	SFXN3 (ENSPMRG00000000222) #31	ENSPMRG00000004326	ENSPMRG00000004320	PDZD7 (ENSPMRG00000004305) #32	LZTS2 (ENSPMRG00000004294) #33	TWNK (ENSPMRG00000004276) #34
Argentine black and white tegu	MODERN SPECIES	19	EXOSC1 (ENSSMRG00000021681)	ENSSMRG00000021680	RRP12 (ENSSMRG00000021679)	ARHGAP19 (ENSSMRG00000021678)	SLIT1 (ENSSMRG00000021677)	LCOR (ENSSMRG00000021676)	ENSSMRG00000021675	PPRC1 (ENSSMRG00000021674) #14	LDB1 (ENSSMRG00000021673) #15	ENSSMRG00000021672	HPS6 (ENSSMRG00000021671) #16	ARMH3 (ENSSMRG00000021670) #18	KCNIP2 (ENSSMRG00000021669) #19	OGA (ENSSMRG00000021668) #20	NPM3 (ENSSMRG00000021667) #21	FGF8 (ENSSMRG00000021666) #22	FBXW4 (ENSSMRG00000021665) #23	DPCD (ENSSMRG00000021664) #24	POLL (ENSSMRG00000021663) #25
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Lizard	MODERN SPECIES	853					ENSACAG00000043329	ENSACAG00000012444	ENSACAG00000021055	PPRC1 (ENSACAG00000012404) #14	LDB1 (ENSACAG00000012317) #15	ENSACAG00000023496	HPS6 (ENSACAG00000012311) #16	ARMH3 (ENSACAG00000012211) #18	KCNIP2 (ENSACAG00000012032) #19	OGA (ENSACAG00000011944) #20	NPM3 (ENSACAG00000011936) #21	FGF8 (ENSACAG00000011928) #22	FBXW4 (ENSACAG00000011888) #23	DPCD (ENSACAG00000029359) #24	POLL (ENSACAG00000011850) #25	ENSACAG00000011539	BTRC (ENSACAG00000011203) #26	LBX1 (ENSACAG00000022501) #27	TLX1 (ENSACAG00000011182) #29	KAZALD1 (ENSACAG00000011169) #30	SFXN3 (ENSACAG00000029026) #31	ENSACAG00000011135	PDZD7 (ENSACAG00000011099) #32	LZTS2 (ENSACAG00000011076) #33
Elapidae	ANCESTRAL SPECIES	4	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Indian cobra	MODERN SPECIES	3	ZDHHC16 (ENSNNAG00000003057)	EXOSC1 (ENSNNAG00000003048)	ENSNNAG00000003029	RRP12 (ENSNNAG00000016135)	ARHGAP19 (ENSNNAG00000016110)	SLIT1 (ENSNNAG00000016033)	LCOR (ENSNNAG00000016005)	PPRC1 (ENSNNAG00000015952) #14	LDB1 (ENSNNAG00000015901) #15	ENSNNAG00000015868	HPS6 (ENSNNAG00000015864) #16	ARMH3 (ENSNNAG00000015743) #18	KCNIP2 (ENSNNAG00000015571) #19	OGA (ENSNNAG00000015525) #20	NPM3 (ENSNNAG00000015516) #21	FGF8 (ENSNNAG00000015504) #22	FBXW4 (ENSNNAG00000015475) #23	DPCD (ENSNNAG00000015439) #24	POLL (ENSNNAG00000015413) #25	ENSNNAG00000015358	BTRC (ENSNNAG00000015268) #26	LBX1 (ENSNNAG00000015245) #27	TLX1 (ENSNNAG00000015238) #29	KAZALD1 (ENSNNAG00000015218) #30	SFXN3 (ENSNNAG00000015203) #31	ENSNNAG00000015152	ENSNNAG00000015138	PDZD7 (ENSNNAG00000015107) #32	LZTS2 (ENSNNAG00000015090) #33	TWNK (ENSNNAG00000015073) #34	ENSNNAG00000015050
Elapidae_a	ANCESTRAL SPECIES		ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Mainland tiger snake	MODERN SPECIES		ARHGAP19 (ENSNSUG00000007052)	SLIT1 (ENSNSUG00000007046)	LCOR (ENSNSUG00000007045)	ENSNSUG00000007044	ENSNSUG00000007043	ENSNSUG00000007041 #14	LDB1 (ENSNSUG00000007029) #15	HPS6 (ENSNSUG00000007027) #16	ENSNSUG00000007026 #18	ENSNSUG00000007025	ENSNSUG00000007024 #18	ENSNSUG00000006959	KCNIP2 (ENSNSUG00000006925) #19	OGA (ENSNSUG00000006678) #20	NPM3 (ENSNSUG00000006677) #21	FGF8 (ENSNSUG00000006675) #22	FBXW4 (ENSNSUG00000006672) #23	DPCD (ENSNSUG00000006670) #24	ENSNSUG00000006669 #25	ENSNSUG00000006668 #25	ENSNSUG00000006614	BTRC (ENSNSUG00000006609) #26	LBX1 (ENSNSUG00000006607) #27	TLX1 (ENSNSUG00000006606) #29	KAZALD1 (ENSNSUG00000006604) #30	SFXN3 (ENSNSUG00000006595) #31	ENSNSUG00000006593	PDZD7 (ENSNSUG00000006588) #32	LZTS2 (ENSNSUG00000006586) #33	TWNK (ENSNSUG00000006583) #34	MRPL43 (ENSNSUG00000006581) #36
Eastern brown snake	MODERN SPECIES	16	ZDHHC16 (ENSPTXG00000018446)	EXOSC1 (ENSPTXG00000018445)	ENSPTXG00000018444	RRP12 (ENSPTXG00000018443)	ENSPTXG00000018441	SLIT1 (ENSPTXG00000018436)	LCOR (ENSPTXG00000018435)	ENSPTXG00000018434	PPRC1 (ENSPTXG00000018433) #14	LDB1 (ENSPTXG00000018432) #15	HPS6 (ENSPTXG00000018431) #16	ARMH3 (ENSPTXG00000018430) #18	KCNIP2 (ENSPTXG00000018423) #19	OGA (ENSPTXG00000018422) #20	NPM3 (ENSPTXG00000018421) #21	FGF8 (ENSPTXG00000018420) #22	FBXW4 (ENSPTXG00000018418) #23	DPCD (ENSPTXG00000018417) #24	POLL (ENSPTXG00000018416) #25	ENSPTXG00000018397	BTRC (ENSPTXG00000018395) #26	LBX1 (ENSPTXG00000018393) #27	TLX1 (ENSPTXG00000018391) #29
Blue-lipped sea krait	MODERN SPECIES	9198																FGF8 (ENSLLTG00000004060) #22
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Archosauria	ANCESTRAL SPECIES	7	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT01030000235534	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Australian saltwater crocodile	MODERN SPECIES	68	ANKRD2 (ENSCPRG00005013635)	EXOSC1 (ENSCPRG00005013566)	ZDHHC16 (ENSCPRG00005013550)	ENSCPRG00005013535	ENSCPRG00005013313	ARHGAP19 (ENSCPRG00005013266)	SLIT1 (ENSCPRG00005013244)	LCOR (ENSCPRG00005013234)	PPRC1 (ENSCPRG00005013227) #14	LDB1 (ENSCPRG00005013215) #15	HPS6 (ENSCPRG00005013211) #16	ARMH3 (ENSCPRG00005013194) #18	KCNIP2 (ENSCPRG00005013176) #19	OGA (ENSCPRG00005013170) #20	NPM3 (ENSCPRG00005013161) #21	FGF8 (ENSCPRG00005013159) #22	ENSCPRG00005013157 #23	ENSCPRG00005013155 #23	DPCD (ENSCPRG00005013153) #24	POLL (ENSCPRG00005013150) #25	ENSCPRG00005013130	BTRC (ENSCPRG00005013112) #26	ENSCPRG00005013103	LBX1 (ENSCPRG00005013102) #27	TLX1 (ENSCPRG00005013094) #29	KAZALD1 (ENSCPRG00005013088) #30	SFXN3 (ENSCPRG00005013022) #31	PDZD7 (ENSCPRG00005013012) #32	ENSCPRG00005013009 #33	TWNK (ENSCPRG00005013007) #34	MRPL43 (ENSCPRG00005012999) #36
Aves	ANCESTRAL SPECIES	6	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
African ostrich	MODERN SPECIES	290	ENSSCUG00000001716	MMS19 (ENSSCUG00000001785)	ZDHHC16 (ENSSCUG00000001868)	EXOSC1 (ENSSCUG00000001873)	ENSSCUG00000001876	RRP12 (ENSSCUG00000001878)	ARHGAP19 (ENSSCUG00000001882)	LCOR (ENSSCUG00000001884)	ENSSCUG00000001887	LDB1 (ENSSCUG00000001889) #15	HPS6 (ENSSCUG00000001892) #16	ARMH3 (ENSSCUG00000001895) #18	KCNIP2 (ENSSCUG00000001896) #19	OGA (ENSSCUG00000001899) #20	NPM3 (ENSSCUG00000001900) #21	FGF8 (ENSSCUG00000001901) #22	FBXW4 (ENSSCUG00000001902) #23	DPCD (ENSSCUG00000001903) #24	POLL (ENSSCUG00000001904) #25	ENSSCUG00000001906	BTRC (ENSSCUG00000001914) #26	ENSSCUG00000001920	KAZALD1 (ENSSCUG00000001922) #30	SFXN3 (ENSSCUG00000001926) #31	ENSSCUG00000001933 #32	ENSSCUG00000001937	ENSSCUG00000001940 #32	ENSSCUG00000001945 #34	ENSSCUG00000001949	SLF2 (ENSSCUG00000001954)	MFSD13A (ENSSCUG00000001958)
Neognathae	ANCESTRAL SPECIES	7	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Great tit	MODERN SPECIES	26	EXOSC1 (ENSPMJG00000004134)	ENSPMJG00000004385	RRP12 (ENSPMJG00000004387)	ARHGAP19 (ENSPMJG00000004396)	SLIT1 (ENSPMJG00000004400)	LCOR (ENSPMJG00000004409)	PPRC1 (ENSPMJG00000004431) #14	LDB1 (ENSPMJG00000004435) #15	ENSPMJG00000004456	HPS6 (ENSPMJG00000004470) #16	ARMH3 (ENSPMJG00000004471) #18	KCNIP2 (ENSPMJG00000004479) #19	ENSPMJG00000004497	OGA (ENSPMJG00000004530) #20	NPM3 (ENSPMJG00000004562) #21	FGF8 (ENSPMJG00000004565) #22	FBXW4 (ENSPMJG00000004570) #23	DPCD (ENSPMJG00000004583) #24	POLL (ENSPMJG00000004590) #25	ENSPMJG00000004603	BTRC (ENSPMJG00000004640) #26	LBX1 (ENSPMJG00000004661) #27	TLX1 (ENSPMJG00000004663) #29	KAZALD1 (ENSPMJG00000004666) #30	SFXN3 (ENSPMJG00000004671) #31	PDZD7 (ENSPMJG00000004677) #32	LZTS2 (ENSPMJG00000004695) #33	TWNK (ENSPMJG00000004696) #34	MRPL43 (ENSPMJG00000004697) #36	SEMA4G (ENSPMJG00000004711)	SLF2 (ENSPMJG00000004736)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Flycatcher	MODERN SPECIES	25	ZDHHC16 (ENSFALG00000008446)	EXOSC1 (ENSFALG00000008450)	ENSFALG00000008454	RRP12 (ENSFALG00000008458)	ARHGAP19 (ENSFALG00000008462)	SLIT1 (ENSFALG00000008472)	LCOR (ENSFALG00000025098)	LDB1 (ENSFALG00000008498) #15	PPRC1 (ENSFALG00000008489) #14	ENSFALG00000008528	HPS6 (ENSFALG00000022918) #16	ARMH3 (ENSFALG00000008569) #18	KCNIP2 (ENSFALG00000008575) #19	OGA (ENSFALG00000008580) #20	NPM3 (ENSFALG00000008586) #21	FGF8 (ENSFALG00000024705) #22	FBXW4 (ENSFALG00000008613) #23	DPCD (ENSFALG00000008617) #24	POLL (ENSFALG00000008619) #25	ENSFALG00000008634	BTRC (ENSFALG00000008656) #26	TLX1 (ENSFALG00000008660) #29	KAZALD1 (ENSFALG00000008666) #30	SFXN3 (ENSFALG00000008668) #31	PDZD7 (ENSFALG00000008671) #32	ENSFALG00000028985	LZTS2 (ENSFALG00000008676) #33	TWNK (ENSFALG00000008680) #34	MRPL43 (ENSFALG00000023885) #36	SEMA4G (ENSFALG00000008684)	ENSFALG00000008686
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT01030000235534	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Medium ground finch	MODERN SPECIES	3	MMS19 (ENSGFOG00000007914)	ZDHHC16 (ENSGFOG00000007902)	EXOSC1 (ENSGFOG00000007885)	ENSGFOG00000007868	RRP12 (ENSGFOG00000007841)	ARHGAP19 (ENSGFOG00000007827)	SLIT1 (ENSGFOG00000004119)	LCOR (ENSGFOG00000004029)	ENSGFOG00000004024	ENSGFOG00000004011 #14	LDB1 (ENSGFOG00000003999) #15	ARMH3 (ENSGFOG00000003948) #18	KCNIP2 (ENSGFOG00000003914) #19	OGA (ENSGFOG00000003883) #20	NPM3 (ENSGFOG00000003871) #21	FGF8 (ENSGFOG00000003860) #22	FBXW4 (ENSGFOG00000003718) #23	DPCD (ENSGFOG00000003687) #24	POLL (ENSGFOG00000003670) #25	ENSGFOG00000003629	ENSGFOG00000003604	ENSGFOG00000003597	BTRC (ENSGFOG00000003584) #26	KAZALD1 (ENSGFOG00000003573) #30	SFXN3 (ENSGFOG00000003555) #31	ENSGFOG00000003538	ENSGFOG00000003506 #32	ENSGFOG00000003498 #32	TWNK (ENSGFOG00000003482) #34	SEMA4G (ENSGFOG00000003465)	ENSGFOG00000003429
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Zebra finch	MODERN SPECIES	28	ZDHHC16 (ENSTGUG00000009668)	EXOSC1 (ENSTGUG00000009692)	ENSTGUG00000021202	RRP12 (ENSTGUG00000009711)	ARHGAP19 (ENSTGUG00000009730)	SLIT1 (ENSTGUG00000009734)	LCOR (ENSTGUG00000009834)	PPRC1 (ENSTGUG00000009839) #14	LDB1 (ENSTGUG00000009855) #15	ENSTGUG00000009862	HPS6 (ENSTGUG00000009875) #16	ARMH3 (ENSTGUG00000009880) #18	KCNIP2 (ENSTGUG00000009911) #19	OGA (ENSTGUG00000009938) #20	NPM3 (ENSTGUG00000009948) #21	FGF8 (ENSTGUG00000009956) #22	FBXW4 (ENSTGUG00000009903) #23	DPCD (ENSTGUG00000009967) #24	POLL (ENSTGUG00000009972) #25	ENSTGUG00000009983	BTRC (ENSTGUG00000010007) #26	LBX1 (ENSTGUG00000010027) #27	TLX1 (ENSTGUG00000010029) #29	ENSTGUG00000027136	KAZALD1 (ENSTGUG00000010037) #30	SFXN3 (ENSTGUG00000010039) #31	PDZD7 (ENSTGUG00000010061) #32	LZTS2 (ENSTGUG00000029397) #33	TWNK (ENSTGUG00000010066) #34	ENSTGUG00000010071 #36	SEMA4G (ENSTGUG00000010077)
Common canary	MODERN SPECIES	7	ZDHHC16 (ENSSCAG00000016614)	EXOSC1 (ENSSCAG00000016610)	ENSSCAG00000016605	RRP12 (ENSSCAG00000016597)	ARHGAP19 (ENSSCAG00000016588)	SLIT1 (ENSSCAG00000016584)	ENSSCAG00000016580	ENSSCAG00000016579	ENSSCAG00000016575 #14	LDB1 (ENSSCAG00000016573) #15	HPS6 (ENSSCAG00000016571) #16	ARMH3 (ENSSCAG00000016565) #18	KCNIP2 (ENSSCAG00000016561) #19	OGA (ENSSCAG00000016559) #20	NPM3 (ENSSCAG00000016557) #21	FGF8 (ENSSCAG00000016555) #22	FBXW4 (ENSSCAG00000016551) #23	DPCD (ENSSCAG00000016547) #24	POLL (ENSSCAG00000016546) #25	ENSSCAG00000016545	BTRC (ENSSCAG00000016542) #26	TLX1 (ENSSCAG00000016539) #29	KAZALD1 (ENSSCAG00000016538) #30	SFXN3 (ENSSCAG00000016535) #31	ENSSCAG00000016532	ENSSCAG00000016531	PDZD7 (ENSSCAG00000016529) #32	TWNK (ENSSCAG00000016528) #34	MRPL43 (ENSSCAG00000016527) #36	SEMA4G (ENSSCAG00000016526)	SLF2 (ENSSCAG00000016525)
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798.d #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Golden eagle	MODERN SPECIES	2	ZDHHC16 (ENSACCG00020000500)	EXOSC1 (ENSACCG00020000443)	ENSACCG00020010002	RRP12 (ENSACCG00020009977)	ARHGAP19 (ENSACCG00020009952)	SLIT1 (ENSACCG00020009931)	LCOR (ENSACCG00020009912)	ENSACCG00020009903	PPRC1 (ENSACCG00020009873) #14	LDB1 (ENSACCG00020009835) #15	HPS6 (ENSACCG00020009815) #16	ARMH3 (ENSACCG00020009789) #18	KCNIP2 (ENSACCG00020009741) #19	OGA (ENSACCG00020009722) #20	NPM3 (ENSACCG00020009702) #21	FGF8 (ENSACCG00020009686) #22	FBXW4 (ENSACCG00020009662) #23	DPCD (ENSACCG00020009630) #24	POLL (ENSACCG00020009601) #25	ENSACCG00020009569	BTRC (ENSACCG00020009499) #26	LBX1 (ENSACCG00020009419) #27	TLX1 (ENSACCG00020009411) #29	KAZALD1 (ENSACCG00020009402) #30	SFXN3 (ENSACCG00020009385) #31	PDZD7 (ENSACCG00020009355) #32	LZTS2 (ENSACCG00020009312) #33	TWNK (ENSACCG00020009294) #34	MRPL43 (ENSACCG00020009283) #36	SEMA4G (ENSACCG00020009255)	SLF2 (ENSACCG00020009231)
Kakapo	MODERN SPECIES	22	MMS19 (ENSSHBG00005020943)	ZDHHC16 (ENSSHBG00005020956)	EXOSC1 (ENSSHBG00005020963)	ENSSHBG00005020970	RRP12 (ENSSHBG00005020977)	ARHGAP19 (ENSSHBG00005020983)	SLIT1 (ENSSHBG00005021002)	LCOR (ENSSHBG00005001762)	PPRC1 (ENSSHBG00005001811) #14	LDB1 (ENSSHBG00005001841) #15	HPS6 (ENSSHBG00005001864) #16	ARMH3 (ENSSHBG00005001905) #18	ENSSHBG00005001961 #19	OGA (ENSSHBG00005001995) #20	NPM3 (ENSSHBG00005002019) #21	FGF8 (ENSSHBG00005002055) #22	FBXW4 (ENSSHBG00005002093) #23	DPCD (ENSSHBG00005002126) #24	POLL (ENSSHBG00005002157) #25	ENSSHBG00005002316	BTRC (ENSSHBG00005002701) #26	LBX1 (ENSSHBG00005002802) #27	TLX1 (ENSSHBG00005002828) #29	KAZALD1 (ENSSHBG00005002844) #30	SFXN3 (ENSSHBG00005002866) #31	PDZD7 (ENSSHBG00005002896) #32	LZTS2 (ENSSHBG00005002935) #33	TWNK (ENSSHBG00005002956) #34	MRPL43 (ENSSHBG00005002979) #36	SEMA4G (ENSSHBG00005003005)	SLF2 (ENSSHBG00005003064)
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT01030000235534	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Anatidae	ANCESTRAL SPECIES	4	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00980000202932	ENSGT00940000157186	ENSGT00530000064017.a
Pink-footed goose	MODERN SPECIES	11	ZDHHC16 (ENSABRG00000008020)	EXOSC1 (ENSABRG00000008001)	ENSABRG00000007994	RRP12 (ENSABRG00000007978)	ARHGAP19 (ENSABRG00000007950)	ENSABRG00000007944	SLIT1 (ENSABRG00000007893)	LCOR (ENSABRG00000007875)	PPRC1 (ENSABRG00000007859) #14	LDB1 (ENSABRG00000007841) #15	ENSABRG00000007812	ARMH3 (ENSABRG00000007775) #18	KCNIP2 (ENSABRG00000007767) #19	OGA (ENSABRG00000007745) #20	NPM3 (ENSABRG00000007714) #21	FGF8 (ENSABRG00000007708) #22	FBXW4 (ENSABRG00000007699) #23	DPCD (ENSABRG00000007691) #24	POLL (ENSABRG00000007682) #25	ENSABRG00000007659	BTRC (ENSABRG00000007647) #26	TLX1 (ENSABRG00000007623) #29	ENSABRG00000007618	KAZALD1 (ENSABRG00000007609) #30	SFXN3 (ENSABRG00000007596) #31	PDZD7 (ENSABRG00000007581) #32	LZTS2 (ENSABRG00000007569) #33	TWNK (ENSABRG00000007559) #34	ENSABRG00000007555	SEMA4G (ENSABRG00000007538)	SLF2 (ENSABRG00000007530)
Duck	MODERN SPECIES	24	SFRP5 (ENSAPLG00000021384)	ZFYVE27 (ENSAPLG00000028815)	ENSAPLG00000015404	ZDHHC16 (ENSAPLG00000012896)	SLIT1 (ENSAPLG00000013620)	ARHGAP19 (ENSAPLG00000014166)	RRP12 (ENSAPLG00000014387)	LCOR (ENSAPLG00000013561)	ENSAPLG00000019156	ENSAPLG00000028566	ENSAPLG00000012284	HPS6 (ENSAPLG00000012202) #16	ARMH3 (ENSAPLG00000011883) #18	OGA (ENSAPLG00000011067) #20	NPM3 (ENSAPLG00000010935) #21	FGF8 (ENSAPLG00000025762) #22	POLL (ENSAPLG00000010211) #25	DPCD (ENSAPLG00000010260) #24	ENSAPLG00000008660	BTRC (ENSAPLG00000008388) #26	LBX1 (ENSAPLG00000026975) #27	SLF2 (ENSAPLG00000004041)	MFSD13A (ENSAPLG00000003639)	SUFU (ENSAPLG00000002654)	TRIM8 (ENSAPLG00000002530)	ARL3 (ENSAPLG00000016017)	SFXN2 (ENSAPLG00000030360) ##31	WBP1L (ENSAPLG00000012879)	CYP17A1 (ENSAPLG00000012297)	BORCS7 (ENSAPLG00000004416)	CNNM2 (ENSAPLG00000013829)
Phasianidae	ANCESTRAL SPECIES	6	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698.n #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT01030000235534	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Japanese quail	MODERN SPECIES	24	ZDHHC16 (ENSCJPG00005019580)	EXOSC1 (ENSCJPG00005019603)	ENSCJPG00005019616	ARHGAP19 (ENSCJPG00005019619)	SLIT1 (ENSCJPG00005019620)	LCOR (ENSCJPG00005019736)	ENSCJPG00005019737	ENSCJPG00005019738	ENSCJPG00005019739 #14	LDB1 (ENSCJPG00005019740) #15	HPS6 (ENSCJPG00005019741) #16	ARMH3 (ENSCJPG00005019742) #18	KCNIP2 (ENSCJPG00005019751) #19	OGA (ENSCJPG00005019752) #20	NPM3 (ENSCJPG00005019854) #21	FGF8 (ENSCJPG00005019855) #22	FBXW4 (ENSCJPG00005019856) #23	DPCD (ENSCJPG00005019857) #24	ENSCJPG00005019858 #25	ENSCJPG00005019859 #25	ENSCJPG00005019860	BTRC (ENSCJPG00005019877) #26	ENSCJPG00005019967	LBX1 (ENSCJPG00005019968) #27	TLX1 (ENSCJPG00005019970) #29	KAZALD1 (ENSCJPG00005019972) #30	SFXN3 (ENSCJPG00005019973) #31	PDZD7 (ENSCJPG00005019974) #32	ENSCJPG00005019975	LZTS2 (ENSCJPG00005019976) #33	TWNK (ENSCJPG00005019977) #34
Phasianidae_b	ANCESTRAL SPECIES	6	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698.n #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT01030000235534	ENSGT01040000244551	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36
Chicken	MODERN SPECIES	35	ZDHHC16 (ENSGALG00010020682)	EXOSC1 (ENSGALG00010020705)	PGAM1 (ENSGALG00010020714)	RRP12 (ENSGALG00010020730)	ARHGAP19 (ENSGALG00010020759)	SLIT1 (ENSGALG00010020778)	LCOR (ENSGALG00010020866)	PPRC1 (ENSGALG00010020889) #14	LDB1 (ENSGALG00010020921) #15	ENSGALG00010020941	HPS6 (ENSGALG00010020949) #16	C6H10orf76 (ENSGALG00010020970) #18	KCNIP2 (ENSGALG00010021012) #19	MGEA5 (ENSGALG00010021023) #20	NPM3 (ENSGALG00010021034) #21	FGF8 (ENSGALG00010021040) #22	FBXW4 (ENSGALG00010023185) #23	DPCD (ENSGALG00010019139) #24	POLL (ENSGALG00010019104) #25	ENSGALG00010017997	BTRC (ENSGALG00010018103) #26	LBX1 (ENSGALG00010019045) #27	TLX1 (ENSGALG00010018467) #29	KAZALD1 (ENSGALG00010017786) #30	SFXN3 (ENSGALG00010017949) #31	PDZD7 (ENSGALG00010017959) #32	ENSGALG00010017964	LZTS2 (ENSGALG00010023177) #33	C10orf2 (ENSGALG00010018482) #34	ENSGALG00010018510 #36	SEMA4G (ENSGALG00010018515)
Turkey	MODERN SPECIES	28	ZDHHC16 (ENSMGAG00000009803)	EXOSC1 (ENSMGAG00000018256)	ENSMGAG00000009817	RRP12 (ENSMGAG00000009829)	ARHGAP19 (ENSMGAG00000009856)	SLIT1 (ENSMGAG00000009859)	LCOR (ENSMGAG00000009950)	PPRC1 (ENSMGAG00000010023) #14	LDB1 (ENSMGAG00000009961) #15	ENSMGAG00000002659	HPS6 (ENSMGAG00000002655) #16	ARMH3 (ENSMGAG00000009992) #18	KCNIP2 (ENSMGAG00000010045) #19	OGA (ENSMGAG00000010077) #20	NPM3 (ENSMGAG00000019749) #21	FGF8 (ENSMGAG00000015335) #22	FBXW4 (ENSMGAG00000010100) #23	DPCD (ENSMGAG00000010112) #24	POLL (ENSMGAG00000010132) #25	ENSMGAG00000010147	BTRC (ENSMGAG00000010164) #26	ENSMGAG00000018253 #29	KAZALD1 (ENSMGAG00000010203) #30	SFXN3 (ENSMGAG00000022982) #31	PDZD7 (ENSMGAG00000010230) #32	ENSMGAG00000021897	ENSMGAG00000018739 ##32	LZTS2 (ENSMGAG00000010236) #33	TWNK (ENSMGAG00000010237) #34	SEMA4G (ENSMGAG00000010240)	SLF2 (ENSMGAG00000010255)
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Chinese turtle	MODERN SPECIES	1738														KCNIP2 (ENSPSIG00000009761) #19	OGA (ENSPSIG00000009514) #20	FGF8 (ENSPSIG00000008176) #22	POLL (ENSPSIG00000007216) #25
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Emydidae	ANCESTRAL SPECIES	6	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.b	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Three-toed box turtle	MODERN SPECIES	39	MARVELD1 (ENSTMTG00000001012)	AVPI1 (ENSTMTG00000001017)	PI4K2A (ENSTMTG00000001025)	ENSTMTG00000001035	MMS19 (ENSTMTG00000001309)	ZDHHC16 (ENSTMTG00000002566)	ARHGAP19 (ENSTMTG00000002583)	ENSTMTG00000002590	LCOR (ENSTMTG00000002602)	PPRC1 (ENSTMTG00000002608) #14	LDB1 (ENSTMTG00000002621) #15	HPS6 (ENSTMTG00000002625) #16	ARMH3 (ENSTMTG00000002641) #18	OGA (ENSTMTG00000002679) #20	NPM3 (ENSTMTG00000002688) #21	FGF8 (ENSTMTG00000002693) #22	FBXW4 (ENSTMTG00000002700) #23	DPCD (ENSTMTG00000002704) #24	POLL (ENSTMTG00000002707) #25	ENSTMTG00000002734	BTRC (ENSTMTG00000002831) #26	LBX1 (ENSTMTG00000002859) #27	TLX1 (ENSTMTG00000002865) #29	KAZALD1 (ENSTMTG00000002879) #30	SFXN3 (ENSTMTG00000002927) #31	PDZD7 (ENSTMTG00000002937) #32	ENSTMTG00000002944 ##32	LZTS2 (ENSTMTG00000002949) #33	TWNK (ENSTMTG00000002956) #34	MRPL43 (ENSTMTG00000002961) #36	SEMA4G (ENSTMTG00000002965)
painted turtle	MODERN SPECIES	2388	ENSCPBG00000011944	RRP12 (ENSCPBG00000011935)	ENSCPBG00000011932	ARHGAP19 (ENSCPBG00000011924)	SLIT1 (ENSCPBG00000005963)	LCOR (ENSCPBG00000005416)	ENSCPBG00000005413	PPRC1 (ENSCPBG00000005408) #14	LDB1 (ENSCPBG00000005401) #15	ENSCPBG00000005394	HPS6 (ENSCPBG00000005375) #16	ARMH3 (ENSCPBG00000003975) #18	KCNIP2 (ENSCPBG00000003838) #19	OGA (ENSCPBG00000003826) #20	NPM3 (ENSCPBG00000003817) #21	FGF8 (ENSCPBG00000003804) #22	FBXW4 (ENSCPBG00000003783) #23	DPCD (ENSCPBG00000003764) #24	POLL (ENSCPBG00000003750) #25	ENSCPBG00000003715	BTRC (ENSCPBG00000003583) #26	LBX1 (ENSCPBG00000003542) #27	TLX1 (ENSCPBG00000003532) #29	KAZALD1 (ENSCPBG00000003520) #30	SFXN3 (ENSCPBG00000003501) #31	ENSCPBG00000003492	ENSCPBG00000003469 #32	ENSCPBG00000003450 #32	LZTS2 (ENSCPBG00000003427) #33	TWNK (ENSCPBG00000003411) #34	MRPL43 (ENSCPBG00000003402) #36
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000155032	ENSGT00390000015287	ENSGT00950000182926.b.d	ENSGT00390000013106	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00990000203892	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005003730	ENSGEVG00005003749	UBTD1 (ENSGEVG00005003758)	ENSGEVG00005003767	ARHGAP19 (ENSGEVG00005003823)	SLIT1 (ENSGEVG00005003855)	LCOR (ENSGEVG00005003931)	ENSGEVG00005003952	ENSGEVG00005003965 #14	LDB1 (ENSGEVG00005003974) #15	HPS6 (ENSGEVG00005003987) #16	ARMH3 (ENSGEVG00005003998) #18	KCNIP2 (ENSGEVG00005004222) #19	OGA (ENSGEVG00005004411) #20	NPM3 (ENSGEVG00005004443) #21	FGF8 (ENSGEVG00005004467) #22	FBXW4 (ENSGEVG00005004522) #23	DPCD (ENSGEVG00005004549) #24	POLL (ENSGEVG00005004570) #25	ENSGEVG00005004603	BTRC (ENSGEVG00005004649) #26	ENSGEVG00005004693	LBX1 (ENSGEVG00005004717) #27	TLX1 (ENSGEVG00005004739) #29	ENSGEVG00005004760	KAZALD1 (ENSGEVG00005004786) #30	SFXN3 (ENSGEVG00005004813) #31	ENSGEVG00005004858	PDZD7 (ENSGEVG00005004930) #32	ENSGEVG00005005016	LZTS2 (ENSGEVG00005005030) #33
Abingdon island giant tortoise	MODERN SPECIES	1912											KCNIP2 (ENSCABG00000002327) #19	ENSCABG00000002340	OGA (ENSCABG00000002352) #20	NPM3 (ENSCABG00000002436) #21	ENSCABG00000002439	FGF8 (ENSCABG00000002441) #22	FBXW4 (ENSCABG00000002445) #23	DPCD (ENSCABG00000002448) #24	ENSCABG00000002449 #25	ENSCABG00000002450 #25	ENSCABG00000002455	BTRC (ENSCABG00000003380) #26	LBX1 (ENSCABG00000004283) #27	TLX1 (ENSCABG00000004286) #29	KAZALD1 (ENSCABG00000004291) #30	SFXN3 (ENSCABG00000004306) #31	ENSCABG00000004310	ENSCABG00000004313 #32	ENSCABG00000004314 #32	LZTS2 (ENSCABG00000004316) #33	TWNK (ENSCABG00000004320) #34
Anura	ANCESTRAL SPECIES	25	ENSGT00940000161460	ENSGT00390000013106	ENSGT01100000263518.A.b	ENSGT00940000157331	ENSGT00940000157322.a	ENSGT00940000154965.A	ENSGT00940000162611.a	ENSGT00950000183137.a #14	ENSGT00390000005639.a.b #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00390000002554 #18	ENSGT00940000157798 #19	ENSGT00390000007726.a.a #20	ENSGT00940000158796 #21	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000164095	ENSGT00940000159672 #26	ENSGT00940000161756 #27	ENSGT00940000158698 #29	ENSGT00530000063555.B #30	ENSGT01030000234641.b.a.b.a.a #31	ENSGT00950000183002.C #32	ENSGT00940000154078.a.a #33	ENSGT00390000004495 #34	ENSGT00390000015375 #36	ENSGT00940000157186	ENSGT00530000064017.a
Leishan spiny toad	MODERN SPECIES	9	ENSLLEG00000009195	ENSLLEG00000009112	PPRC1 (ENSLLEG00000008978) #14	ENSLLEG00000008950	ENSLLEG00000008924	LDB1 (ENSLLEG00000008345) #15	ENSLLEG00000007323	HPS6 (ENSLLEG00000007212) #16	ENSLLEG00000006720 #18	ENSLLEG00000006641	ENSLLEG00000006620	KCNIP2 (ENSLLEG00000006545) #19	OGA (ENSLLEG00000005763) #20	NPM3 (ENSLLEG00000030101) #21	ENSLLEG00000030089	FGF8 (ENSLLEG00000030080) #22	ENSLLEG00000030073	FBXW4 (ENSLLEG00000030048) #23	DPCD (ENSLLEG00000030025) #24	POLL (ENSLLEG00000030007) #25	ENSLLEG00000029961	BTRC (ENSLLEG00000029876) #26	ENSLLEG00000029846	LBX1 (ENSLLEG00000029839) #27	TLX1 (ENSLLEG00000029828) #29	KAZALD1 (ENSLLEG00000029818) #30	SFXN3 (ENSLLEG00000029770) #31	ENSLLEG00000029729	ENSLLEG00000029713	PDZD7 (ENSLLEG00000029647) #32	ENSLLEG00000029630
Frog	MODERN SPECIES	7	slit1 (ENSXETG00000003405)	lcor (ENSXETG00000046643)	pprc1 (ENSXETG00000037399) #14	ldb1 (ENSXETG00000001714) #15	ENSXETG00000006272	hps6 (ENSXETG00000006271) #16	armh3 (ENSXETG00000006269) #18	ENSXETG00000048284	ENSXETG00000046014	kcnip2 (ENSXETG00000014462) #19	oga (ENSXETG00000014468) #20	ENSXETG00000048408	npm3 (ENSXETG00000014472) #21	ENSXETG00000042829	ENSXETG00000040225	fgf8 (ENSXETG00000014474) #22	ENSXETG00000044919	fbxw4 (ENSXETG00000021190) #23	dpcd (ENSXETG00000010773) #24	poll (ENSXETG00000032755) #25	slc2a9 (ENSXETG00000021195)	ENSXETG00000047528	btrc (ENSXETG00000021199) #26	lbx1 (ENSXETG00000040868) #27	tlx1 (ENSXETG00000008043) #29	kazald1 (ENSXETG00000008045) #30	sfxn3 (ENSXETG00000021403) #31	pdzd7 (ENSXETG00000021391) #32	lzts2 (ENSXETG00000015201) #33	twnk (ENSXETG00000015205) #34	mrpl43 (ENSXETG00000015206) #36
Coelacanth	MODERN SPECIES	1141														KCNIP2 (ENSLACG00000011175) #19	OGA (ENSLACG00000010162) #20	FGF8 (ENSLACG00000006945) #22	DPCD (ENSLACG00000002235) #24	POLL (ENSLACG00000001250) #25
Actinopterygii	ANCESTRAL SPECIES	29	ENSGT00940000157274	ENSGT00940000161556	ENSGT00940000153441.a.b	ENSGT00940000158924	ENSGT00390000011010.a.b	ENSGT00940000157514.b	ENSGT00940000159406	ENSGT00940000159378	ENSGT01030000234543.B	ENSGT00940000160543	ENSGT00940000182429	ENSGT00940000158698 #29	ENSGT00940000161756 #27	ENSGT00940000159672 #26	ENSGT00940000164095	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT01030000234610.b.a.a
Neopterygii	ANCESTRAL SPECIES	33										ENSGT00940000160543	ENSGT01030000234543.B	ENSGT00940000158698 #29	ENSGT00940000164611	ENSGT00940000159672 #26	ENSGT00940000164095	ENSGT00940000159518 #22	ENSGT00390000005029 #23	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	92	ENSGT00940000166291	ENSGT00950000183029.B.j	ENSGT01050000244827.E	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611	ENSGT00940000164095.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00390000006243	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a
Clupeocephala	ANCESTRAL SPECIES	141	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.j	ENSGT01050000244827.E	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034
Otomorpha	ANCESTRAL SPECIES	10	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034
Clupeiformes	ANCESTRAL SPECIES	95	ENSGT00940000166291	ENSGT00950000183029.B.j.h	ENSGT00950000183029.B.j.g.b	ENSGT01050000244827.E	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154615.i.a.b.i.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00940000155008.C	ENSGT00940000168119	ENSGT00940000162318	ENSGT00940000158644	ENSGT00940000159467	ENSGT00730000111274	ENSGT01070000253744.a.a.b.b
Denticle herring	MODERN SPECIES	18	CGAS (ENSDCDG00000002934)	ddx43 (ENSDCDG00000002965)	KCNQ5 (ENSDCDG00000003148)	RIMS1 (ENSDCDG00000003449)	asrgl1 (ENSDCDG00000004365)	OGFRL1 (ENSDCDG00000004374)	ENSDCDG00000004467	asrgl1 (ENSDCDG00000004521)	RIMS1 (ENSDCDG00000004537)	ENSDCDG00000004599	ENSDCDG00000004601	ENSDCDG00000004604	tlx1 (ENSDCDG00000004607) #29	lbx1b (ENSDCDG00000004608)	slc2a15a (ENSDCDG00000004629)	fgf8a (ENSDCDG00000004914) #22	fbxw4 (ENSDCDG00000004918) #23	wbp1la (ENSDCDG00000004933)	cyp17a1 (ENSDCDG00000004968)	borcs7 (ENSDCDG00000005644)	cnnm2a (ENSDCDG00000005649)	nt5c2a (ENSDCDG00000005828)	MFAP4 (ENSDCDG00000007459)	inaa (ENSDCDG00000007517)	pcgf6 (ENSDCDG00000007916)	ENSDCDG00000009450	ENSDCDG00000009466	bmp5 (ENSDCDG00000009487)	hmgcll1 (ENSDCDG00000009583)	hcrtr2 (ENSDCDG00000011683)	FAM83B (ENSDCDG00000011690)
Atlantic herring	MODERN SPECIES	4	slc17a5 (ENSCHAG00000027772)	EEF1A1 (ENSCHAG00000027762)	CGAS (ENSCHAG00000027756)	CGAS (ENSCHAG00000027752)	ddx43 (ENSCHAG00000027750)	KCNQ5 (ENSCHAG00000027745)	RIMS1 (ENSCHAG00000027742)	asrgl1 (ENSCHAG00000027741)	OGFRL1 (ENSCHAG00000027739)	b3gat2 (ENSCHAG00000027738)	smap1 (ENSCHAG00000027736)	SDHAF4 (ENSCHAG00000027735)	tlx1 (ENSCHAG00000027734) #29	ENSCHAG00000027733	slc2a15a (ENSCHAG00000027732)	fgf8a (ENSCHAG00000027731) #22	fbxw4 (ENSCHAG00000027727) #23	wbp1la (ENSCHAG00000027726)	cyp17a1 (ENSCHAG00000027725)	borcs7 (ENSCHAG00000027723)	cnnm2a (ENSCHAG00000027722)	MFAP4 (ENSCHAG00000027720)	nt5c2a (ENSCHAG00000027716)	inaa (ENSCHAG00000027715)	pcgf6 (ENSCHAG00000027714)	DST (ENSCHAG00000018616)	ENSCHAG00000017852	COL21A1 (ENSCHAG00000017810)	bmp5 (ENSCHAG00000017736)	HMGCL (ENSCHAG00000017227)	ENSCHAG00000017196
Otophysi	ANCESTRAL SPECIES	26	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b
Cyprinoidei	ANCESTRAL SPECIES	11	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	159	ENSGT00940000154866.B.a.d	ENSGT00940000166291.b	ENSGT00950000183029.B.i.b.b	ENSGT01050000244827.E.g.a	ENSGT00940000163653	ENSGT00940000155933.b.a.d	ENSGT00940000155134.y.d	ENSGT00950000183045.A.a.a.o	ENSGT00390000018730.B.c.a	ENSGT00940000159583.m	ENSGT00940000155884.a.f	ENSGT00390000009155.a	ENSGT00940000158698.i #29	ENSGT00940000164611.b.k.b	ENSGT00940000164095.a.b	ENSGT00940000159518.a.a #22	ENSGT00390000005029.e #23	ENSGT00950000183109.c.a.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849.j	ENSGT00940000159034.kb.b	ENSGT00940000163289.b.a.b.d	ENSGT00940000154418.a.a.a.b	ENSGT00940000158034.p	ENSGT00950000183100.B.a.b	ENSGT00390000005639.a.b.d.a.a #15	ENSGT00530000063586.a.f	ENSGT00390000001546.d #16	ENSGT00940000165188.a	ENSGT00940000157052.d	ENSGT00390000010398.A.d
Cyprininae_a	ANCESTRAL SPECIES	101	ENSGT00940000154866.B.a.d	ENSGT00940000166291.b	ENSGT00950000183029.B.i.b.b	ENSGT01050000244827.E.g.a	ENSGT00940000163653	ENSGT00940000155933.b.a.d	ENSGT00940000155134.y.d	ENSGT00950000183045.A.a.a.o	ENSGT00390000018730.B.c.a	ENSGT00940000159583.m	ENSGT00940000155884.a.f	ENSGT00390000009155.a	ENSGT00940000158698.i #29	ENSGT00940000164611.b.k.b	ENSGT00940000164095.a.b	ENSGT00940000159518.a.a #22	ENSGT00390000005029.e #23	ENSGT00950000183109.c.a.a.a.a.a	ENSGT00940000155588.b.a	ENSGT00390000015849.i.b	ENSGT00940000159034.kb.b	ENSGT00940000163289.b.a.b.d	ENSGT00940000154418.a.a.a.b	ENSGT00940000158034.p	ENSGT00950000183100.B.a.a	ENSGT00390000005639.a.b.d.a.a #15	ENSGT00530000063586.a.f	ENSGT00390000001546.d #16	ENSGT00940000165188.a	ENSGT00940000157052.d	ENSGT00390000010398.A.d
Common carp reference	MODERN SPECIES	48	ENSCCRG00000081717	slc17a5 (ENSCCRG00000073356)	eef1a1a (ENSCCRG00000072785)	CGAS (ENSCCRG00000076509)	ddx43 (ENSCCRG00000076256)	KCNQ5 (ENSCCRG00000027387)	RIMS1 (ENSCCRG00000002003)	asrgl1 (ENSCCRG00000070456)	OGFRL1 (ENSCCRG00000067169)	b3gat2 (ENSCCRG00000058439)	smap1 (ENSCCRG00000081017)	SDHAF4 (ENSCCRG00000064793)	tlx1 (ENSCCRG00000073948) #29	ENSCCRG00000069064	slc2a15a (ENSCCRG00000015324)	fgf8a (ENSCCRG00000010033) #22	fbxw4 (ENSCCRG00000010031) #23	wbp1la (ENSCCRG00000078206)	cyp17a1 (ENSCCRG00000010022)	borcs7 (ENSCCRG00000072536)	cnnm2a (ENSCCRG00000008778)	nt5c2a (ENSCCRG00000008908)	inaa (ENSCCRG00000010014)	pcgf6 (ENSCCRG00000035757)	polr1c (ENSCCRG00000035743)	ldb1a (ENSCCRG00000077621) #15	ENSCCRG00000008310	ENSCCRG00000008496 #16	nsmce4a (ENSCCRG00000008254)	ENSCCRG00000055785	ly6pge (ENSCCRG00000008128)
Golden-line barbel	MODERN SPECIES	105	ENSSGRG00000044960	RIN2 (ENSSGRG00000044958)	slc17a5 (ENSSGRG00000043383)	CGAS (ENSSGRG00000043256)	ddx43 (ENSSGRG00000043244)	KCNQ5 (ENSSGRG00000043237)	RIMS1 (ENSSGRG00000043226)	asrgl1 (ENSSGRG00000043220)	OGFRL1 (ENSSGRG00000043154)	b3gat2 (ENSSGRG00000043153)	smap1 (ENSSGRG00000043150)	SDHAF4 (ENSSGRG00000043149)	tlx1 (ENSSGRG00000043148) #29	ENSSGRG00000043147	slc2a15a (ENSSGRG00000043143)	fgf8a (ENSSGRG00000043139) #22	fbxw4 (ENSSGRG00000043135) #23	wbp1la (ENSSGRG00000043124)	cyp17a1 (ENSSGRG00000042981)	borcs7 (ENSSGRG00000042980)	cnnm2a (ENSSGRG00000042979)	nt5c2a (ENSSGRG00000042916)	inaa (ENSSGRG00000042911)	pcgf6 (ENSSGRG00000042910)	polr1c (ENSSGRG00000042884)	ldb1a (ENSSGRG00000042844) #15	ENSSGRG00000042842	ENSSGRG00000042841 #16	nsmce4a (ENSSGRG00000042840)	ENSSGRG00000042839	ly6pge (ENSSGRG00000042837)
Goldfish	MODERN SPECIES	31	pyroxd2 (ENSCARG00000068734)	zgc:123010 (ENSCARG00000068708)	LOXL4 (ENSCARG00000068696)	ENSCARG00000068689	CRTAC1 (ENSCARG00000068383)	GOLGA7B (ENSCARG00000068356)	sfrp5 (ENSCARG00000068349)	asrgl1 (ENSCARG00000068335)	OGFRL1 (ENSCARG00000068324)	b3gat2 (ENSCARG00000068307)	smap1 (ENSCARG00000068232)	SDHAF4 (ENSCARG00000068213)	tlx1 (ENSCARG00000068195) #29	ENSCARG00000068184	slc2a15a (ENSCARG00000068105)	fgf8a (ENSCARG00000068086) #22	fbxw4 (ENSCARG00000068064) #23	wbp1la (ENSCARG00000068059)	cyp17a1 (ENSCARG00000068007)	borcs7 (ENSCARG00000067993)	cnnm2a (ENSCARG00000067978)	nt5c2a (ENSCARG00000067337)	inaa (ENSCARG00000067223)	pcgf6 (ENSCARG00000067189)	polr1c (ENSCARG00000067130)	ENSCARG00000067119	ENSCARG00000067104	ENSCARG00000067069	snapc1b (ENSCARG00000067057)	SYT16 (ENSCARG00000067038)	SGPP1 (ENSCARG00000067030)
Cyprininae	ANCESTRAL SPECIES	384						ENSGT00940000155933.b.a.c	ENSGT00940000155134.y.c	ENSGT00950000183045.A.a.a.p	ENSGT00390000018730.B.c.b	ENSGT00940000159583.n	ENSGT00940000155884.a.e	ENSGT00390000009155.b	ENSGT00940000158698.j #29	ENSGT00940000164611.b.k.a	ENSGT00940000164095.a.a	ENSGT00940000159518.a.b #22	ENSGT00390000005029.f #23	ENSGT00950000183109.c.a.a.a.a.b	ENSGT00390000015849.i.a.b	ENSGT00940000159034.kb.a	ENSGT00940000163289.b.a.b.c	ENSGT00940000154418.a.a.a.a	ENSGT00940000158034.o	ENSGT00950000183100.B.b	ENSGT00390000005639.a.b.d.a.b #15	ENSGT00530000063586.a.e	ENSGT00390000001546.c #16	ENSGT00940000165188.b	ENSGT00940000157052.c	ENSGT00390000010398.A.c	ENSGT00950000182815.a.a.a.b.b
Goldfish	MODERN SPECIES	4	ENSCARG00000004637	dnajb12a (ENSCARG00000004610)	hif1an (ENSCARG00000004263)	wnt8b (ENSCARG00000004209)	scdb (ENSCARG00000004189)	ENSCARG00000004182	RIMS1 (ENSCARG00000002394)	asrgl1 (ENSCARG00000010412)	OGFRL1 (ENSCARG00000010381)	b3gat2 (ENSCARG00000010362)	smap1 (ENSCARG00000010288)	SDHAF4 (ENSCARG00000010273)	tlx1 (ENSCARG00000010261) #29	ENSCARG00000010255	slc2a15a (ENSCARG00000010237)	fgf8a (ENSCARG00000010217) #22	fbxw4 (ENSCARG00000010202) #23	wbp1la (ENSCARG00000010199)	borcs7 (ENSCARG00000010191)	cnnm2a (ENSCARG00000010165)	nt5c2a (ENSCARG00000009652)	inaa (ENSCARG00000009609)	pcgf6 (ENSCARG00000009593)	POLR1C (ENSCARG00000009582)	ldb1a (ENSCARG00000008642) #15	ENSCARG00000008560	ENSCARG00000008552 #16	nsmce4a (ENSCARG00000008542)	ENSCARG00000008515	ly6pge (ENSCARG00000008506)	ENSCARG00000008502
Cyprininae_a	ANCESTRAL SPECIES	107	ENSGT01030000234532.A.a.a.b.j.a.b	ENSGT00940000154866.B.a.c	ENSGT00940000166291.a	ENSGT00950000183029.B.j.h	ENSGT01050000244827.E.g.b	ENSGT00940000155933.b.a.c	ENSGT00940000155134.y.c	ENSGT00950000183045.A.a.a.p	ENSGT00390000018730.B.c.b	ENSGT00940000159583.n	ENSGT00940000155884.a.e	ENSGT00390000009155.b	ENSGT00940000158698.j #29	ENSGT00940000164611.b.k.a	ENSGT00940000164095.a.a	ENSGT00940000159518.a.b #22	ENSGT00390000005029.f #23	ENSGT00950000183109.c.a.a.a.a.b	ENSGT00940000155588.b.b	ENSGT00390000015849.j	ENSGT00390000015849.i.a.b	ENSGT00940000159034.kb.a	ENSGT00940000163289.b.a.b.c	ENSGT00940000154418.a.a.a.a	ENSGT00940000158034.o	ENSGT00950000183100.B.b	ENSGT00390000005639.a.b.d.a.b #15	ENSGT00530000063586.a.e	ENSGT00390000001546.c #16	ENSGT00940000165188.b	ENSGT00940000157052.c
Common carp reference	MODERN SPECIES	18	CGAS (ENSCCRG00000075489)	ENSCCRG00000050069	ddx43 (ENSCCRG00000007601)	KCNQ5 (ENSCCRG00000012224)	RIMS1 (ENSCCRG00000052961)	asrgl1 (ENSCCRG00000076614)	ENSCCRG00000013245	OGFRL1 (ENSCCRG00000020959)	b3gat2 (ENSCCRG00000037475)	smap1 (ENSCCRG00000077009)	SDHAF4 (ENSCCRG00000062363)	tlx1 (ENSCCRG00000062204) #29	ENSCCRG00000078379	ENSCCRG00000077372	slc2a15a (ENSCCRG00000034481)	fgf8a (ENSCCRG00000058573) #22	fbxw4 (ENSCCRG00000081048) #23	wbp1la (ENSCCRG00000008830)	borcs7 (ENSCCRG00000080250)	cnnm2a (ENSCCRG00000067197)	nt5c2a (ENSCCRG00000069262)	inaa (ENSCCRG00000008627)	pcgf6 (ENSCCRG00000008611)	polr1c (ENSCCRG00000078507)	ldb1a (ENSCCRG00000008367) #15	ENSCCRG00000081966	ENSCCRG00000008289 #16	ENSCCRG00000008233	ly6pge (ENSCCRG00000019026)	unc5b (ENSCCRG00000011439)	ENSCCRG00000015313
Golden-line barbel	MODERN SPECIES	68	SLC24A3 (ENSSGRG00000030529)	RIN2 (ENSSGRG00000030524)	slc17a5 (ENSSGRG00000030360)	eef1a1a (ENSSGRG00000028572)	CGAS (ENSSGRG00000028453)	KCNQ5 (ENSSGRG00000028438)	RIMS1 (ENSSGRG00000028430)	asrgl1 (ENSSGRG00000028425)	OGFRL1 (ENSSGRG00000028414)	b3gat2 (ENSSGRG00000028412)	smap1 (ENSSGRG00000028411)	SDHAF4 (ENSSGRG00000028409)	tlx1 (ENSSGRG00000028408) #29	ENSSGRG00000028407	slc2a15a (ENSSGRG00000028377)	fgf8a (ENSSGRG00000028374) #22	fbxw4 (ENSSGRG00000028373) #23	wbp1la (ENSSGRG00000028372)	cyp17a1 (ENSSGRG00000028369)	borcs7 (ENSSGRG00000028368)	cnnm2a (ENSSGRG00000028351)	nt5c2a (ENSSGRG00000027341)	inaa (ENSSGRG00000027325)	pcgf6 (ENSSGRG00000027324)	POLR1C (ENSSGRG00000027316)	ldb1a (ENSSGRG00000027260) #15	ENSSGRG00000027253	ENSSGRG00000027248 #16	nsmce4a (ENSSGRG00000027234)	ENSSGRG00000027198	ly6pge (ENSSGRG00000027196)
Zebrafish	MODERN SPECIES	4	RIN2 (ENSDARG00000074589)	slc17a5 (ENSDARG00000055190)	eef1a1a (ENSDARG00000039502)	CGAS (ENSDARG00000021572)	ddx43 (ENSDARG00000022614)	KCNQ5 (ENSDARG00000069954)	RIMS1 (ENSDARG00000074680)	asrgl1 (ENSDARG00000021681)	ogfrl1 (ENSDARG00000061223)	b3gat2 (ENSDARG00000030733)	smap1 (ENSDARG00000031302)	sdhaf4 (ENSDARG00000039390)	tlx1 (ENSDARG00000003965) #29	lbx1a (ENSDARG00000018321)	slc2a15a (ENSDARG00000029894)	fgf8a (ENSDARG00000003399) #22	fbxw4 (ENSDARG00000033551) #23	wbp1la (ENSDARG00000013245)	cyp17a1 (ENSDARG00000033566)	borcs7 (ENSDARG00000055070)	cnnm2a (ENSDARG00000061195)	nt5c2a (ENSDARG00000039399)	inaa (ENSDARG00000011862)	pcgf6 (ENSDARG00000069681)	polr1c (ENSDARG00000039400)	ENSDARG00000095011	ldb1a (ENSDARG00000010137) #15	ENSDARG00000039406	nsmce4a (ENSDARG00000024311)	ENSDARG00000062790	ly6pge (ENSDARG00000098392)
Characiphysae	ANCESTRAL SPECIES	13	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.a.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b
Channel catfish	MODERN SPECIES	22	rin2 (ENSIPUG00000023376)	SLC17A5 (ENSIPUG00000023388)	EEF1A1 (ENSIPUG00000023399)	CGAS (ENSIPUG00000023419)	ddx43 (ENSIPUG00000023423)	kcnq5 (ENSIPUG00000024247)	rims1 (ENSIPUG00000024250)	asrgl1 (ENSIPUG00000024269)	OGFRL1 (ENSIPUG00000024273)	B3GAT2 (ENSIPUG00000024274)	smap1 (ENSIPUG00000024326)	sdhaf4 (ENSIPUG00000024338)	TLX1 (ENSIPUG00000024339) #29	ENSIPUG00000024340	slc2a15a (ENSIPUG00000024343)	fgf8a (ENSIPUG00000024347) #22	fbxw4 (ENSIPUG00000024432) #23	wbp1l (ENSIPUG00000024436)	cyp17 (ENSIPUG00000024439)	borcs7 (ENSIPUG00000024448)	cnnm2 (ENSIPUG00000024452)	NT5C2 (ENSIPUG00000024453)	pcgf6 (ENSIPUG00000024462)	polr1c (ENSIPUG00000024464)	ldb1 (ENSIPUG00000024466) #15	prom1a (ENSIPUG00000024468)	ENSIPUG00000024469 #16	nsmce4a (ENSIPUG00000024470)	ENSIPUG00000024472	ly6pge (ENSIPUG00000024475)	unc5b (ENSIPUG00000024476)
Characiphysae_b	ANCESTRAL SPECIES	10	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.a.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b
Characoidei	ANCESTRAL SPECIES	5	ENSGT00940000166683.a.a	ENSGT00940000154866.B.a	ENSGT00940000166291	ENSGT00950000183029.B.i.a.b	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00950000183100.B	ENSGT00390000005639.a.b.d.a #15	ENSGT00530000063586.a	ENSGT00390000001546 #16	ENSGT00940000165188	ENSGT00940000157052	ENSGT00390000010398.A	ENSGT00950000182815.a.a.a.b
Red-bellied piranha	MODERN SPECIES	10	RIN2 (ENSPNAG00000009141)	slc17a5 (ENSPNAG00000009132)	CGAS (ENSPNAG00000009093)	EEF1A1 (ENSPNAG00000008912)	ddx43 (ENSPNAG00000001232)	KCNQ5 (ENSPNAG00000008878)	RIMS1 (ENSPNAG00000001214)	asrgl1 (ENSPNAG00000008660)	OGFRL1 (ENSPNAG00000008651)	b3gat2 (ENSPNAG00000001132)	smap1 (ENSPNAG00000008623)	SDHAF4 (ENSPNAG00000001114)	tlx1 (ENSPNAG00000006029) #29	ENSPNAG00000001103	slc2a15a (ENSPNAG00000008571)	fgf8a (ENSPNAG00000008557) #22	fbxw4 (ENSPNAG00000001068) #23	wbp1la (ENSPNAG00000001064)	cyp17a1 (ENSPNAG00000007027)	borcs7 (ENSPNAG00000008503)	cnnm2a (ENSPNAG00000001058)	nt5c2a (ENSPNAG00000001046)	inaa (ENSPNAG00000008457)	pcgf6 (ENSPNAG00000001021)	polr1c (ENSPNAG00000008443)	ldb1a (ENSPNAG00000000981) #15	ENSPNAG00000000955	ENSPNAG00000000946 #16	nsmce4a (ENSPNAG00000008367)	ENSPNAG00000000925	ENSPNAG00000008328
Mexicana tetra	MODERN SPECIES	17	RIN2 (ENSAMXG00000004501)	slc17a5 (ENSAMXG00000004496)	EEF1A1 (ENSAMXG00000004487)	CGAS (ENSAMXG00000036028)	ddx43 (ENSAMXG00000004457)	KCNQ5 (ENSAMXG00000004427)	RIMS1 (ENSAMXG00000011907)	asrgl1 (ENSAMXG00000037416)	OGFRL1 (ENSAMXG00000031531)	b3gat2 (ENSAMXG00000039282)	smap1 (ENSAMXG00000043334)	SDHAF4 (ENSAMXG00000035767)	tlx1 (ENSAMXG00000011990) #29	ENSAMXG00000033957	slc2a15a (ENSAMXG00000012007)	fgf8 (ENSAMXG00000034070) #22	fbxw4 (ENSAMXG00000033937) #23	wbp1la (ENSAMXG00000033725)	cyp17a1 (ENSAMXG00000012029)	borcs7 (ENSAMXG00000012036)	cnnm2a (ENSAMXG00000012039)	nt5c2a (ENSAMXG00000039026)	inaa (ENSAMXG00000012052)	pcgf6 (ENSAMXG00000012056)	polr1c (ENSAMXG00000012062)	ldb1a (ENSAMXG00000038752) #15	ENSAMXG00000012078	ENSAMXG00000037294 #16	nsmce4a (ENSAMXG00000012091)	ENSAMXG00000035371	ly6pge (ENSAMXG00000012106)
Electric eel	MODERN SPECIES	438								asrgl1 (ENSEEEG00000000649)	OGFRL1 (ENSEEEG00000000659)	b3gat2 (ENSEEEG00000000673)	smap1 (ENSEEEG00000000678)	ENSEEEG00000000683	tlx1 (ENSEEEG00000000686) #29	ENSEEEG00000000691	slc2a15a (ENSEEEG00000000700)	fgf8a (ENSEEEG00000000736) #22	fbxw4 (ENSEEEG00000000785) #23	wbp1la (ENSEEEG00000000856)	cyp17a1 (ENSEEEG00000000866)	borcs7 (ENSEEEG00000000936)	cnnm2a (ENSEEEG00000000937)	nt5c2a (ENSEEEG00000000958)
Euteleosteomorpha	ANCESTRAL SPECIES	89											ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000167270	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000158120
Acanthomorphata	ANCESTRAL SPECIES	96										ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00860000134673	ENSGT00530000068411	ENSGT00940000167270	ENSGT00940000154865
Euacanthomorphacea	ANCESTRAL SPECIES	51										ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00860000134673	ENSGT00530000068411	ENSGT00940000167270	ENSGT00940000154865
Percomorphaceae	ANCESTRAL SPECIES	57										ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000156999	ENSGT00940000156237	ENSGT00570000079168.b.b.a	ENSGT00950000183100.B	ENSGT00390000002970
Tiger tail seahorse	MODERN SPECIES	312															slc2a15a (ENSHCOG00000009371)	fgf8a (ENSHCOG00000009341) #22	fbxw4 (ENSHCOG00000009309) #23	wbp1la (ENSHCOG00000009211)	nt5c2a (ENSHCOG00000009200)	borcs7 (ENSHCOG00000009167)	cyp17a1 (ENSHCOG00000009148)	ctu2 (ENSHCOG00000009126)	cdk1 (ENSHCOG00000009089)	HNRNPLL (ENSHCOG00000009062)	galm (ENSHCOG00000009018)	ENSHCOG00000008998	vps8 (ENSHCOG00000008947)	GBF1 (ENSHCOG00000008538) #9	pitx3 (ENSHCOG00000008464)	PNLIPRP2 (ENSHCOG00000008453)	ENSHCOG00000008441
Percomorphaceae_B	ANCESTRAL SPECIES	24	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000166683.b	ENSGT00940000154865	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000154865	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00390000010672	ENSGT00940000154200.A.b	ENSGT00940000156083
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000154865	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00390000010672	ENSGT00940000154200.A.b	ENSGT00940000156083
Aplocheiloidei	ANCESTRAL SPECIES	75	ENSGT00940000156925.v #9	ENSGT00940000158120	ENSGT00940000154865	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b
Mangrove rivulus	MODERN SPECIES	60	macroh2a2 (ENSKMAG00000016927)	ENSKMAG00000016977	ENSKMAG00000017115	ENSKMAG00000017167	ENSKMAG00000017194	ncapd3 (ENSKMAG00000017218)	calhm2.1 (ENSKMAG00000017248)	CALHM3 (ENSKMAG00000017261)	hells (ENSKMAG00000017279)	rab1ab (ENSKMAG00000017357)	ENSKMAG00000017386	ENSKMAG00000017422	tlx1 (ENSKMAG00000017438) #29	ENSKMAG00000017448	slc2a15a (ENSKMAG00000017465)	fgf8a (ENSKMAG00000017503) #22	fbxw4 (ENSKMAG00000017521) #23	wbp1la (ENSKMAG00000017540)	nt5c2a (ENSKMAG00000017632)	borcs7 (ENSKMAG00000017712)	cyp17a1 (ENSKMAG00000017730)	RNF166 (ENSKMAG00000017768)	ENSKMAG00000017797	ENSKMAG00000017812	ENSKMAG00000017824	pcgf6 (ENSKMAG00000017851)	sertad2b (ENSKMAG00000017866)	slc1a4 (ENSKMAG00000017885)	smap1 (ENSKMAG00000017926)	b3gat2 (ENSKMAG00000017941)	OGFRL1 (ENSKMAG00000017968)
Turquoise killifish	MODERN SPECIES	1612	CDC42EP3 (ENSNFUG00015001023)	ENSNFUG00015001026	zgc:175280 (ENSNFUG00015001044)	RIN2 (ENSNFUG00015001140)	cyp17a1 (ENSNFUG00015001215)	ENSNFUG00015001372	NT5C2A (ENSNFUG00015001389)	CALHM3 (ENSNFUG00015001415)	HELLS (ENSNFUG00015001451)	rab1ab (ENSNFUG00015001545)	ENSNFUG00015001550	ENSNFUG00015001556	tlx1 (ENSNFUG00015001561) #29	ENSNFUG00015001570	slc2a15a (ENSNFUG00015001603)	FGF8A (ENSNFUG00015001647) #22	FBXW4 (ENSNFUG00015001665) #23	WBP1LA (ENSNFUG00015001688)	ENSNFUG00015001749	ENSNFUG00015001783	ENSNFUG00015001809	ENSNFUG00015001812	macroh2a2 (ENSNFUG00015001818)	GBF1 (ENSNFUG00015001830) #9	pitx3 (ENSNFUG00015001868)	ENSNFUG00015001888	kcnk18 (ENSNFUG00015001909)	SLC18A2 (ENSNFUG00015001958)	PDZD8 (ENSNFUG00015002034)	ENSNFUG00015002040	EDARADD (ENSNFUG00015002047)
Cyprinodontoidei	ANCESTRAL SPECIES	55			ENSGT00940000157361.b	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000156925.v #9	ENSGT00940000154518.b	ENSGT00940000154551.b.i	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000160228.i.a.a	ENSGT00390000017697.b	ENSGT00940000157361.b	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.i #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000156925.v #9	ENSGT00940000154518.b	ENSGT00940000154551.b.i	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746
Poecilia	ANCESTRAL SPECIES	11	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.a.a.a	ENSGT00390000017697.b	ENSGT00940000157361.b	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.i #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000156925.v #9	ENSGT00940000154518.b	ENSGT00940000154551.b.i	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746
NAME_6	ANCESTRAL SPECIES	159									ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.i #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000156925.v #9	ENSGT00940000154518.b	ENSGT00940000154551.b.i	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746
Sailfin molly	MODERN SPECIES	1811																fgf8a (ENSPLAG00000014840) #22	fbxw4 (ENSPLAG00000000349) #23	wbp1la (ENSPLAG00000014939)	nt5c2a (ENSPLAG00000015008)	borcs7 (ENSPLAG00000015026)	cyp17a1 (ENSPLAG00000015053)
Amazon molly	MODERN SPECIES	698									hells (ENSPFOG00000001954)	rab1ab (ENSPFOG00000001829)	ENSPFOG00000001789	ENSPFOG00000001766	tlx1 (ENSPFOG00000001748) #29	ENSPFOG00000001722	slc2a15a (ENSPFOG00000001511)	fgf8a (ENSPFOG00000001304) #22	fbxw4 (ENSPFOG00000001140) #23	ENSPFOG00000001054	nt5c2a (ENSPFOG00000000907)	borcs7 (ENSPFOG00000000793)	cyp17a1 (ENSPFOG00000000699)	GBF1 (ENSPFOG00000000359) #9	pitx3 (ENSPFOG00000000330)	hspa12a (ENSPFOG00000000277)	eno4 (ENSPFOG00000000231)	shtn1 (ENSPFOG00000024277)
Guppy	MODERN SPECIES	445	ciao2b (ENSPREG00000020644)	ENSPREG00000020631	ENSPREG00000020614	ENSPREG00000020598	RIN2 (ENSPREG00000020566)	ENSPREG00000020540	ncapd3 (ENSPREG00000020416)	CALHM3 (ENSPREG00000020384)	hells (ENSPREG00000020337)	rab1ab (ENSPREG00000020321)	ENSPREG00000020295	ENSPREG00000020277	tlx1 (ENSPREG00000020203) #29	ENSPREG00000020178	slc2a15a (ENSPREG00000020156)	fgf8a (ENSPREG00000020145) #22	ENSPREG00000020136 #23	nt5c2a (ENSPREG00000020101)	borcs7 (ENSPREG00000020069)	cyp17a1 (ENSPREG00000019128)	GBF1 (ENSPREG00000018759) #9	pitx3 (ENSPREG00000018702)	hspa12a (ENSPREG00000018686)	eno4 (ENSPREG00000018589)	shtn1 (ENSPREG00000018561)	atp6v1ba (ENSPREG00000018542)	vax1 (ENSPREG00000018520)	ENSPREG00000018490	slc18a2 (ENSPREG00000018431)	PDZD8 (ENSPREG00000018413)	ENSPREG00000018403
Platyfish	MODERN SPECIES	14	ciao2b (ENSXMAG00000005652)	ENSXMAG00000005658	ENSXMAG00000005660	ENSXMAG00000005661	RIN2 (ENSXMAG00000023405)	ENSXMAG00000022977	ncapd3 (ENSXMAG00000005697)	CALHM3 (ENSXMAG00000005726)	hells (ENSXMAG00000005731)	rab1ab (ENSXMAG00000005757)	ENSXMAG00000021554	ENSXMAG00000021357	tlx1 (ENSXMAG00000005769) #29	ENSXMAG00000020837	slc2a15a (ENSXMAG00000003577)	fgf8a (ENSXMAG00000025032) #22	fbxw4 (ENSXMAG00000027566) #23	ENSXMAG00000005779	nt5c2a (ENSXMAG00000005784)	borcs7 (ENSXMAG00000025827)	cyp17a1 (ENSXMAG00000005813)	ENSXMAG00000005854	GBF1 (ENSXMAG00000005864) #9	pitx3 (ENSXMAG00000005921)	hspa12a (ENSXMAG00000005923)	eno4 (ENSXMAG00000000773)	shtn1 (ENSXMAG00000000782)	atp6v1ba (ENSXMAG00000003759)	vax1 (ENSXMAG00000025346)	ENSXMAG00000003754	slc18a2 (ENSXMAG00000003738)
NAME_4	ANCESTRAL SPECIES	258				ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b
Mummichog	MODERN SPECIES	470									hells (ENSFHEG00000022950)	rab1ab (ENSFHEG00000022985)	ENSFHEG00000023000	ENSFHEG00000023010	tlx1 (ENSFHEG00000023201) #29	ENSFHEG00000001566	slc2a15a (ENSFHEG00000001577)	fgf8a (ENSFHEG00000001579) #22	fbxw4 (ENSFHEG00000001585) #23	wbp1la (ENSFHEG00000001590)	nt5c2a (ENSFHEG00000001596)	ENSFHEG00000001603	cyp17a1 (ENSFHEG00000001611)
Sheepshead minnow	MODERN SPECIES	770												rab1ab (ENSCVAG00000022585)	FAM98A (ENSCVAG00000022569)	tlx1 (ENSCVAG00000022553) #29	slc2a15a (ENSCVAG00000022541)	fgf8a (ENSCVAG00000022509) #22	fbxw4 (ENSCVAG00000022489) #23	wbp1la (ENSCVAG00000022403)	nt5c2a (ENSCVAG00000022386)	ENSCVAG00000021900	HNRNPLL (ENSCVAG00000021794)
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000154518.b	ENSGT00940000156925.v #9	ENSGT00940000158120	ENSGT01070000253760.b.a.a.a.b.b	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153246.a.a.b.h	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.k #23	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00940000155780.l	ENSGT00940000155780.k.a	ENSGT00390000009948.c	ENSGT00940000158949	ENSGT00940000157500	ENSGT00940000156981	ENSGT00940000160595.a.a
Oryzias_b	ANCESTRAL SPECIES	49							ENSGT00940000153246.a.a.b.h	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.k #23	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT00940000155780.k.a	ENSGT00390000009948.c	ENSGT00940000158949	ENSGT00940000157500	ENSGT00940000156981	ENSGT00940000160595.a.a	ENSGT00940000155715	ENSGT00940000158584	ENSGT00940000164759
Indian medaka	MODERN SPECIES	14	xylb (ENSOMEG00000001306)	acvr2ba (ENSOMEG00000001302)	ENSOMEG00000001297	ENSOMEG00000001294	ENSOMEG00000001291	vezf1b (ENSOMEG00000001282)	mrps23 (ENSOMEG00000001278)	NGEF (ENSOMEG00000001273)	ENSOMEG00000001266	nlk2 (ENSOMEG00000001262)	SMCO4 (ENSOMEG00000001257)	ENSOMEG00000001254	OMG (ENSOMEG00000001250)	ENSOMEG00000001247	slc2a15a (ENSOMEG00000001244)	fgf8a (ENSOMEG00000001237) #22	ENSOMEG00000001235 #23	fbxw4 (ENSOMEG00000001232) #23	ENSOMEG00000001228	ENSOMEG00000001219	ENSOMEG00000001212	ENSOMEG00000001209	ENSOMEG00000001205	abcd3a (ENSOMEG00000001199)	F3 (ENSOMEG00000001193)	cnn3b (ENSOMEG00000001191)	alg14 (ENSOMEG00000001187)	aoc1 (ENSOMEG00000001182)	ENSOMEG00000001179	ENSOMEG00000001177	ENSOMEG00000001175
Javanese ricefish	MODERN SPECIES	6	ide (ENSOJAG00000011010)	ide (ENSOJAG00000009987)	kmo (ENSOJAG00000009801)	opn3 (ENSOJAG00000009755)	ENSOJAG00000009740	stra6l (ENSOJAG00000009728)	ncapd3 (ENSOJAG00000008815)	CALHM3 (ENSOJAG00000008718)	hells (ENSOJAG00000008349)	rab1ab (ENSOJAG00000007982)	ENSOJAG00000007883	ENSOJAG00000007852	ENSOJAG00000007843	tlx1 (ENSOJAG00000007771) #29	slc2a15a (ENSOJAG00000007503)	fgf8a (ENSOJAG00000007416) #22	fbxw4 (ENSOJAG00000007376) #23	polr1b (ENSOJAG00000007238)	nanp (ENSOJAG00000007218)	cyp1b1 (ENSOJAG00000007189)	ENSOJAG00000007161	ENSOJAG00000007137	cdc42ep3 (ENSOJAG00000007125)	ide (ENSOJAG00000006576)	marchf5 (ENSOJAG00000006507)	cpeb3 (ENSOJAG00000006321)	CCNJ (ENSOJAG00000005276)	ENSOJAG00000005271	blnk (ENSOJAG00000005236)	dntt (ENSOJAG00000005201)	ENSOJAG00000005184
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000154518.b	ENSGT00940000156925.v #9	ENSGT00940000158120	ENSGT01070000253760.b.a.a.a.b.b	ENSGT00940000167270	ENSGT00530000068411	ENSGT00940000153246.a.a.b.h	ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.k #23	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00950000183037.B.a	ENSGT00950000182992.a.b.a.a	ENSGT00940000157736	ENSGT01100000263502.A.a.b	ENSGT00390000000747	ENSGT00940000155780.l	ENSGT00940000155780.k.a	ENSGT00390000009948.c	ENSGT00940000158949	ENSGT00940000157500	ENSGT00940000156981	ENSGT00940000160595.a.a
Japanese Medaka HdrR	MODERN SPECIES	6	macroh2a2 (ENSORLG00000001088)	ENSORLG00000018201	ENSORLG00000027498	ENSORLG00000001066	ENSORLG00000001051	ENSORLG00000028371	ENSORLG00000025120	ncapd3 (ENSORLG00000001014)	CALHM3 (ENSORLG00000000995)	hells (ENSORLG00000000987)	rab1ab (ENSORLG00000028104)	ENSORLG00000024874	ENSORLG00000027360	tlx1 (ENSORLG00000000935) #29	slc2a15a (ENSORLG00000000924)	fgf8a (ENSORLG00000024917) #22	fbxw4 (ENSORLG00000000906) #23	polr1b (ENSORLG00000000890)	nanp (ENSORLG00000000861)	cyp1b1 (ENSORLG00000000853)	ENSORLG00000023798	ENSORLG00000030099	cdc42ep3 (ENSORLG00000000835)	ENSORLG00000026323	ENSORLG00000026964	opn3 (ENSORLG00000000827)	kmo (ENSORLG00000000814)	ide (ENSORLG00000000774)	ide (ENSORLG00000000751)	marchf5 (ENSORLG00000000740)	cpeb3 (ENSORLG00000000726)
Chinese medaka	MODERN SPECIES	70						ENSOSIG00000003501	CALHM3 (ENSOSIG00000003497)	ENSOSIG00000003491	CALHM3 (ENSOSIG00000003484)	hells (ENSOSIG00000019042)	rab1ab (ENSOSIG00000018820)	ENSOSIG00000018814	ENSOSIG00000018813	tlx1 (ENSOSIG00000018812) #29	slc2a15a (ENSOSIG00000018811)	fgf8a (ENSOSIG00000018810) #22	fbxw4 (ENSOSIG00000018808) #23	nanp (ENSOSIG00000018806)	cyp1b1 (ENSOSIG00000018805)	ENSOSIG00000018804	cdc42ep3 (ENSOSIG00000018803)	opn3 (ENSOSIG00000018802)	kmo (ENSOSIG00000018798)	ide (ENSOSIG00000015872)	marchf5 (ENSOSIG00000015823)	cpeb3 (ENSOSIG00000015765)	BTAF1 (ENSOSIG00000015758)	ENSOSIG00000015756	ENSOSIG00000015755	ENSOSIG00000015754	ENSOSIG00000015752
Ovalentaria_B	ANCESTRAL SPECIES	25				ENSGT00530000068411	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Cichlidae	ANCESTRAL SPECIES	58	ENSGT00940000154200.A.b	ENSGT00390000010672	ENSGT00940000164286.j.b.b	ENSGT00940000164412.a.a.a	ENSGT00390000007683	ENSGT00390000014293.b	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	38	ENSGT00940000154200.A.b	ENSGT00390000010672	ENSGT00940000164286.j.b.b	ENSGT00940000164412.a.a.a	ENSGT00390000007683	ENSGT00390000014293.b	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT00940000153566.b	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000165200	ENSGT00390000017746	ENSGT00940000157593	ENSGT00700000104522	ENSGT00940000161152
Nile tilapia	MODERN SPECIES	4	ENSONIG00000035825	ENSONIG00000013156	chchd1 (ENSONIG00000040274)	ENSONIG00000013158	galm (ENSONIG00000013162)	ENSONIG00000034160	HNRNPLL (ENSONIG00000013164)	hells (ENSONIG00000013166)	rab1ab (ENSONIG00000042001)	ENSONIG00000040852	cep68 (ENSONIG00000013169)	ENSONIG00000027250	tlx1 (ENSONIG00000013171) #29	ENSONIG00000013173	slc2a15a (ENSONIG00000013174)	fgf8a (ENSONIG00000013179) #22	fbxw4 (ENSONIG00000013182) #23	ENSONIG00000031213	ENSONIG00000030814	nt5c2a (ENSONIG00000009175)	ENSONIG00000041259	borcs7 (ENSONIG00000038162)	cyp17 (ENSONIG00000009168)	RNF166 (ENSONIG00000029083)	CTU2 (ENSONIG00000009166)	cdk1 (ENSONIG00000009163)	ncapd3 (ENSONIG00000009159)	yipf4 (ENSONIG00000036496)	exo1 (ENSONIG00000009157)	PDZD8 (ENSONIG00000009155)	slc18a2 (ENSONIG00000009152)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	65	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00940000165200	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23
Haplochromini	ANCESTRAL SPECIES	76	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00940000165200	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23
Burton s mouthbrooder	MODERN SPECIES	286	vax1 (ENSHBUG00000014644)	kcnk18 (ENSHBUG00000014624)	slc18a2 (ENSHBUG00000014615)	PDZD8 (ENSHBUG00000014533)	ENSHBUG00000014521	exo1 (ENSHBUG00000014510)	yipf4 (ENSHBUG00000014471)	ncapd3 (ENSHBUG00000014444)	cdk1 (ENSHBUG00000014405)	ctu2 (ENSHBUG00000014360)	RNF166 (ENSHBUG00000014339)	cyp17a1 (ENSHBUG00000014322)	borcs7 (ENSHBUG00000014291)	nt5c2a (ENSHBUG00000014253)	slc2a15a (ENSHBUG00000014132)	fgf8a (ENSHBUG00000014055) #22	fbxw4 (ENSHBUG00000014024) #23	ENSHBUG00000014007	ENSHBUG00000013946	ENSHBUG00000013784	ism2b (ENSHBUG00000013769)	sptlc2b (ENSHBUG00000013747)	ENSHBUG00000013723	snw1 (ENSHBUG00000013693)	nrxn3b (ENSHBUG00000013575)	CEP128 (ENSHBUG00000013236)	tshr (ENSHBUG00000013171)	gtf2a1 (ENSHBUG00000013133)	ches1 (ENSHBUG00000013125)	kcnk13b (ENSHBUG00000013117)	psmc1a (ENSHBUG00000013107)
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00390000008403	ENSGT00940000153766.A	ENSGT00390000001216	ENSGT00940000164045	ENSGT00940000160761	ENSGT00390000003256	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b.k	ENSGT00390000000614	ENSGT00940000172797	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000153954	ENSGT00950000183147.B
P. nyererei	MODERN SPECIES	492	kcnk18 (ENSPNYG00000003604)	slc18a2 (ENSPNYG00000003555)	PDZD8 (ENSPNYG00000003509)	ENSPNYG00000003492	ENSPNYG00000003466	exo1 (ENSPNYG00000003414)	yipf4 (ENSPNYG00000003344)	ncapd3 (ENSPNYG00000002918)	cdk1 (ENSPNYG00000002812)	ctu2 (ENSPNYG00000002790)	RNF166 (ENSPNYG00000002749)	cyp17a1 (ENSPNYG00000002693)	borcs7 (ENSPNYG00000002686)	nt5c2a (ENSPNYG00000002605)	ENSPNYG00000002573	fgf8a (ENSPNYG00000002299) #22	fbxw4 (ENSPNYG00000002264) #23	ENSPNYG00000002257	ncoa4 (ENSPNYG00000002178)	yipf3 (ENSPNYG00000002133)	dnph1 (ENSPNYG00000002105)	ENSPNYG00000002070	ENSPNYG00000002039	LRRC73 (ENSPNYG00000002011)	mea1 (ENSPNYG00000001966)
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000161152	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00510000047676	ENSGT00940000153168.B	ENSGT01030000235521.b	ENSGT00940000153566.b	ENSGT00940000153335.a.b	ENSGT00390000008797.g	ENSGT00950000182909.b.b.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00490000044642.a.a.a.a.a.a.d.a.b.b.d.b.d.b	ENSGT00390000008403	ENSGT00940000153766.A	ENSGT00390000001216	ENSGT00940000164045	ENSGT00940000160761	ENSGT00390000003256	ENSGT00390000016927	ENSGT01030000234620.a.a.a.b.k	ENSGT00390000000614	ENSGT00940000172797	ENSGT00940000170622	ENSGT00940000168290	ENSGT00940000153954
Eastern happy	MODERN SPECIES	4	ENSACLG00000005035	exo1 (ENSACLG00000005020)	yipf4 (ENSACLG00000005010)	ENSACLG00000005002	ncapd3 (ENSACLG00000004944)	cdk1 (ENSACLG00000004925)	ENSACLG00000004924	ENSACLG00000004914	ctu2 (ENSACLG00000004899)	RNF166 (ENSACLG00000004886)	cyp17a1 (ENSACLG00000004868)	borcs7 (ENSACLG00000004855)	nt5c2a (ENSACLG00000004818)	slc2a15a (ENSACLG00000004729)	ENSACLG00000004709	fgf8a (ENSACLG00000004676) #22	fbxw4 (ENSACLG00000004635) #23	ENSACLG00000004624	ENSACLG00000004598	ncoa4 (ENSACLG00000004547)	yipf3 (ENSACLG00000004518)	dnph1 (ENSACLG00000004498)	ENSACLG00000004450	ENSACLG00000004316	ENSACLG00000004297	LRRC73 (ENSACLG00000004272)	mea1 (ENSACLG00000004254)	ppp2r5d (ENSACLG00000004203)	ENSACLG00000004195	ENSACLG00000004157	ENSACLG00000004135
Zebra mbuna	MODERN SPECIES	262														ENSMZEG00005021459	slc2a15a (ENSMZEG00005021448)	fgf8a (ENSMZEG00005019845) #22	fbxw4 (ENSMZEG00005019838) #23	ENSMZEG00005019835
Lyretail cichlid	MODERN SPECIES	631													ENSNBRG00000007495	NXPE3 (ENSNBRG00000007513)	slc2a15a (ENSNBRG00000007563)	fgf8a (ENSNBRG00000007605) #22	fbxw4 (ENSNBRG00000007618) #23
Midas cichlid	MODERN SPECIES	304			HNRNPLL (ENSACIG00000018811)	galm (ENSACIG00000018827)	ENSACIG00000018885	chchd1 (ENSACIG00000018903)	ENSACIG00000018911	hells (ENSACIG00000018996)	ENSACIG00000019020	rab1ab (ENSACIG00000019049)	ENSACIG00000019466	ENSACIG00000019477	tlx1 (ENSACIG00000019485) #29	ENSACIG00000019501	slc2a15a (ENSACIG00000019508)	fgf8a (ENSACIG00000019536) #22	fbxw4 (ENSACIG00000019546) #23	wbp1la (ENSACIG00000019632)	nt5c2a (ENSACIG00000019651)	borcs7 (ENSACIG00000019682)	cyp17a1 (ENSACIG00000019699)	ENSACIG00000019727	RNF166 (ENSACIG00000019736)	ENSACIG00000019762	cdk1 (ENSACIG00000019771)
Pomacentridae	ANCESTRAL SPECIES	36	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00530000068411	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	196				ENSGT00530000068411	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a
Amphiprion	ANCESTRAL SPECIES	45					ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT00940000182466	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00940000164115.A.f.b.a.a.b.a	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000161907	ENSGT00940000161552	ENSGT00940000156782.c	ENSGT00720000108792.A	ENSGT00940000162185	ENSGT00940000157051	ENSGT00940000165086.b	ENSGT00940000155493	ENSGT00940000153430.a.b	ENSGT01030000234641.a.b ##31	ENSGT00940000164222	ENSGT00730000111063
Clown anemonefish	MODERN SPECIES	224															slc2a15a (ENSAOCG00000010408)	fgf8a (ENSAOCG00000010575) #22	ENSAOCG00000010599	fbxw4 (ENSAOCG00000010651) #23
Orange clownfish	MODERN SPECIES	12	ENSAPEG00000001567	ENSAPEG00000001551	ENSAPEG00000001536	CALHM3 (ENSAPEG00000001492)	hells (ENSAPEG00000001422)	rab1ab (ENSAPEG00000001358)	cep68 (ENSAPEG00000001346)	ENSAPEG00000001331	tlx1 (ENSAPEG00000001309) #29	ENSAPEG00000001289	ENSAPEG00000001282	ENSAPEG00000001269	ENSAPEG00000001218	ENSAPEG00000001191	slc2a15a (ENSAPEG00000001082)	fgf8a (ENSAPEG00000001059) #22	ENSAPEG00000001047	fbxw4 (ENSAPEG00000001006) #23	wbp1la (ENSAPEG00000000943)	ttl (ENSAPEG00000000811)	fignl1 (ENSAPEG00000000794)	ikzf1 (ENSAPEG00000000762)	vwc2 (ENSAPEG00000000741)	zgc:110045 (ENSAPEG00000000729)	MOCOS (ENSAPEG00000000704)	si:ch211-117n7.7 (ENSAPEG00000000636)	tm9sf3 (ENSAPEG00000000610)	prdx3 (ENSAPEG00000000601)	sfxn4 (ENSAPEG00000000585) ##31	dennd10 (ENSAPEG00000000514)	eif3s10 (ENSAPEG00000000491)
Spiny chromis	MODERN SPECIES	796								CALHM3 (ENSAPOG00000007624)	hells (ENSAPOG00000007707)	rab1ab (ENSAPOG00000007746)	cep68 (ENSAPOG00000007771)	ENSAPOG00000007793	tlx1 (ENSAPOG00000007816) #29	ENSAPOG00000007830	slc2a15a (ENSAPOG00000007916)	fgf8a (ENSAPOG00000007933) #22	fbxw4 (ENSAPOG00000007951) #23	wbp1la (ENSAPOG00000007967)
Bicolor damselfish	MODERN SPECIES	1333														ENSSPAG00000014007	slc2a15a (ENSSPAG00000013966)	fgf8a (ENSSPAG00000013947) #22	fbxw4 (ENSSPAG00000013938) #23	wbp1la (ENSSPAG00000013904)
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000158042	ENSGT00940000157361.b	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000156983.a.b	ENSGT00910000147025	ENSGT00390000005537	ENSGT00940000158042	ENSGT00940000157361.b	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Climbing perch	MODERN SPECIES	6	ENSATEG00000027192	ENSATEG00000025669	FANCL (ENSATEG00000008380)	ENSATEG00000008364	CCDC85A (ENSATEG00000008323)	ENSATEG00000008267	ENSATEG00000008251	ENSATEG00000008203	ENSATEG00000008107	ENSATEG00000008052	ENSATEG00000008036	ENSATEG00000028010	tlx1 (ENSATEG00000008007) #29	ENSATEG00000007988	slc2a15a (ENSATEG00000007930)	fgf8a (ENSATEG00000026743) #22	fbxw4 (ENSATEG00000007875) #23	ENSATEG00000007857	wbp1la (ENSATEG00000028457)	nt5c2a (ENSATEG00000007708)	ENSATEG00000027968	cyp17a1 (ENSATEG00000006671)	ENSATEG00000006645	ENSATEG00000006626	ENSATEG00000006613	ENSATEG00000006538	ENSATEG00000006517	ENSATEG00000006510	ENSATEG00000006496	ENSATEG00000006420	chchd1 (ENSATEG00000006402)
Siamese fighting fish	MODERN SPECIES	6	NDST2 (ENSBSLG00000023311)	zswim8 (ENSBSLG00000021426)	chchd1 (ENSBSLG00000020206)	ENSBSLG00000020204	ENSBSLG00000020188	galm (ENSBSLG00000020179)	ENSBSLG00000020176	HNRNPLL (ENSBSLG00000019836)	RNF166 (ENSBSLG00000019612)	ctu2 (ENSBSLG00000019434)	cdk1 (ENSBSLG00000019295)	cyp17a1 (ENSBSLG00000018948)	borcs7 (ENSBSLG00000018888)	nt5c2a (ENSBSLG00000018270)	ENSBSLG00000018157	fgf8a (ENSBSLG00000017970) #22	fbxw4 (ENSBSLG00000017928) #23	slc2a15a (ENSBSLG00000017772)	ENSBSLG00000017749	ENSBSLG00000017735	ENSBSLG00000017719	tlx1 (ENSBSLG00000017662) #29	ENSBSLG00000017648	ENSBSLG00000017633	ENSBSLG00000017629	rab1ab (ENSBSLG00000017531)	hells (ENSBSLG00000017428)	CALHM3 (ENSBSLG00000017409)	calhm2.1 (ENSBSLG00000017403)	ncapd3 (ENSBSLG00000017235)	ENSBSLG00000017204
Zig-zag eel	MODERN SPECIES	6	fbxo28 (ENSMAMG00000024850)	ENSMAMG00000008758	nvl (ENSMAMG00000008767)	ENSMAMG00000008789	ENSMAMG00000008803	aprt (ENSMAMG00000026356)	ENSMAMG00000008851	PIEZO1 (ENSMAMG00000008871)	ENSMAMG00000008958	ENSMAMG00000008995	ENSMAMG00000009009	ENSMAMG00000009027	tlx1 (ENSMAMG00000009039) #29	ENSMAMG00000026497	slc2a15a (ENSMAMG00000009076)	fgf8a (ENSMAMG00000009113) #22	fbxw4 (ENSMAMG00000009140) #23	nt5c2a (ENSMAMG00000009164)	ENSMAMG00000009222	cyp17a1 (ENSMAMG00000009230)	ENSMAMG00000009255	ENSMAMG00000009262	ENSMAMG00000009280	ENSMAMG00000009304	ENSMAMG00000009341	ENSMAMG00000009356	ENSMAMG00000009850	ENSMAMG00000009903	ENSMAMG00000027999	ENSMAMG00000009946	ENSMAMG00000009982
Carangaria	ANCESTRAL SPECIES	19	ENSGT00910000147025	ENSGT00390000005537	ENSGT00940000158042	ENSGT00940000157361.b	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23
Carangaria_A	ANCESTRAL SPECIES	31	ENSGT00940000155134.y	ENSGT00940000156983.a.b	ENSGT00390000005537	ENSGT00940000158042	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000156983.a.b	ENSGT00390000005537	ENSGT00940000158042	ENSGT00940000164978.b.c	ENSGT00940000153566.b	ENSGT00940000179143	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a
Greater amberjack	MODERN SPECIES	30	ENSSDUG00000017276	fancl (ENSSDUG00000017224)	vrk2 (ENSSDUG00000017194)	ENSSDUG00000017182	zgc:175280 (ENSSDUG00000017134)	ncapd3 (ENSSDUG00000017066)	calhm2.1 (ENSSDUG00000017039)	CALHM3 (ENSSDUG00000017015)	hells (ENSSDUG00000016924)	rab1ab (ENSSDUG00000016888)	ENSSDUG00000016800	ENSSDUG00000016787	tlx1 (ENSSDUG00000016770) #29	ENSSDUG00000016763	slc2a15a (ENSSDUG00000016737)	fgf8a (ENSSDUG00000016733) #22	fbxw4 (ENSSDUG00000016703) #23
Yellowtail amberjack	MODERN SPECIES	3109	fancl (ENSSLDG00000019147)	ENSSLDG00000019106	ENSSLDG00000019095	zgc:175280 (ENSSLDG00000019070)	ncapd3 (ENSSLDG00000019038)	ENSSLDG00000019024	calhm2.1 (ENSSLDG00000019017)	CALHM3 (ENSSLDG00000019000)	hells (ENSSLDG00000018960)	rab1ab (ENSSLDG00000018942)	ENSSLDG00000018925	ENSSLDG00000018910	tlx1 (ENSSLDG00000018898) #29	ENSSLDG00000018888	slc2a15a (ENSSLDG00000018856)	fgf8a (ENSSLDG00000018838) #22	fbxw4 (ENSSLDG00000018817) #23	wbp1la (ENSSLDG00000018784)	nt5c2a (ENSSLDG00000018749)	borcs7 (ENSSLDG00000018734)	cyp17a1 (ENSSLDG00000018716)	ENSSLDG00000018704	RNF166 (ENSSLDG00000018689)	ctu2 (ENSSLDG00000018672)	cdk1 (ENSSLDG00000018654)	HNRNPLL (ENSSLDG00000018626)	galm (ENSSLDG00000018600)	ENSSLDG00000018554	chchd1 (ENSSLDG00000018533)	ENSSLDG00000018475	zswim8 (ENSSLDG00000018377)
Barramundi perch	MODERN SPECIES	338						ncapd3 (ENSLCAG00010012677)	calhm2.1 (ENSLCAG00010012756)	CALHM3 (ENSLCAG00010012762)	hells (ENSLCAG00010012788)	rab1ab (ENSLCAG00010012896)	cep68 (ENSLCAG00010012901)	ENSLCAG00010012907	tlx1 (ENSLCAG00010012909) #29	ENSLCAG00010012914	slc2a15a (ENSLCAG00010012928)	fgf8a (ENSLCAG00010012964) #22	fbxw4 (ENSLCAG00010012970) #23	wbp1la (ENSLCAG00010012975)	nt5c2a (ENSLCAG00010013040)	borcs7 (ENSLCAG00010013169)	cyp17a1 (ENSLCAG00010013188)	ENSLCAG00010013228	RNF166 (ENSLCAG00010013229)	ctu2 (ENSLCAG00010013230)	cdk1 (ENSLCAG00010013233)	HNRNPLL (ENSLCAG00010013250)
Pleuronectoidei	ANCESTRAL SPECIES	107									ENSGT00940000153566.b	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b
Tongue sole	MODERN SPECIES	3	ENSCSEG00000016685	ENSCSEG00000016694	TMEM41A (ENSCSEG00000016702)	wipf1a (ENSCSEG00000016716)	ENSCSEG00000016723	ciao2b (ENSCSEG00000016730)	cdh1 (ENSCSEG00000016749)	RIN2 (ENSCSEG00000016764)	ENSCSEG00000016789	ENSCSEG00000016841	borcs7 (ENSCSEG00000016849)	cyp17a1 (ENSCSEG00000016867)	ctu2 (ENSCSEG00000016884)	wbp1la (ENSCSEG00000016898)	slc2a15a (ENSCSEG00000016904)	fgf8a (ENSCSEG00000016911) #22	fbxw4 (ENSCSEG00000016917) #23	tlx1 (ENSCSEG00000016924) #29	ENSCSEG00000016934	ENSCSEG00000016941	hells (ENSCSEG00000016985)	CALHM3 (ENSCSEG00000017051)	ncapd3 (ENSCSEG00000017061)	MCM8 (ENSCSEG00000017142)	CRLS1 (ENSCSEG00000017167)	ENSCSEG00000017170	ENSCSEG00000017185	ENSCSEG00000017237	si:ch73-130a3.4 (ENSCSEG00000017296)	cdc5l (ENSCSEG00000017309)	supt3h (ENSCSEG00000017349)
Turbot	MODERN SPECIES	6	nphp1 (ENSSMAG00000019664)	zgc:65997 (ENSSMAG00000019711)	ENSSMAG00000019724	ENSSMAG00000019790	ENSSMAG00000019747	ENSSMAG00000019782	vip (ENSSMAG00000033181)	fbxo5 (ENSSMAG00000019877)	ENSSMAG00000019886	ENSSMAG00000019908	slc2a15a (ENSSMAG00000019977)	ENSSMAG00000019950	ENSSMAG00000037166	ENSSMAG00000019960 #29	ENSSMAG00000019969	fgf8a (ENSSMAG00000034015) #22	ENSSMAG00000000880 #23	ENSSMAG00000032721	nt5c2a (ENSSMAG00000000954)	ENSSMAG00000001004	cyp17a1 (ENSSMAG00000001013)	ENSSMAG00000001041	ENSSMAG00000001052	setd4 (ENSSMAG00000001111)	cryzl1 (ENSSMAG00000001067)	ENSSMAG00000001127	ENSSMAG00000037229	pdxkb (ENSSMAG00000028455)	ENSSMAG00000027237	ENSSMAG00000001541	NCKAP1 (ENSSMAG00000001571)
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000157361.b	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Tetraodontidae	ANCESTRAL SPECIES	83								ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00440000037341.a	ENSGT00390000010672	ENSGT00940000164286.j.b.b	ENSGT00940000154200.A.b	ENSGT00940000156083
Fugu	MODERN SPECIES	16	inpp5f (ENSTRUG00000017919)	TIAL1 (ENSTRUG00000020927)	atoh7 (ENSTRUG00000017954)	MYPN (ENSTRUG00000017955)	CACUL1 (ENSTRUG00000020565)	SIRT1 (ENSTRUG00000017974)	dnajc12 (ENSTRUG00000024432)	CALHM3 (ENSTRUG00000000336)	hells (ENSTRUG00000000350)	rab1ab (ENSTRUG00000023164)	ENSTRUG00000023025	ENSTRUG00000028920	tlx1 (ENSTRUG00000000431) #29	ENSTRUG00000000457	slc2a15a (ENSTRUG00000000474)	fgf8a (ENSTRUG00000000925) #22	fbxw4 (ENSTRUG00000001025) #23	wbp1la (ENSTRUG00000032138)	nt5c2a (ENSTRUG00000001182)	borcs7 (ENSTRUG00000032893)	cyp17a1 (ENSTRUG00000001509)	ENSTRUG00000026748	RNF166 (ENSTRUG00000031483)	FAM98A (ENSTRUG00000027624)	ctu2 (ENSTRUG00000027026)	ENSTRUG00000029940	vps8 (ENSTRUG00000026854)	ENSTRUG00000026660	XPO1 (ENSTRUG00000027000)	SANBR (ENSTRUG00000005912)	pex13 (ENSTRUG00000006329)
Tetraodon	MODERN SPECIES	10	aptx (ENSTNIG00000010570)	ENSTNIG00000001180	ENSTNIG00000010569	odam (ENSTNIG00000010568)	ENSTNIG00000010567	ENSTNIG00000000359	ENSTNIG00000010566	scpp5 (ENSTNIG00000010565)	cnga1a (ENSTNIG00000010564)	ENSTNIG00000010563	bdh2 (ENSTNIG00000010562)	ENSTNIG00000010561	dctd (ENSTNIG00000010560)	TENM3 (ENSTNIG00000005377)	slc2a15a (ENSTNIG00000006363)	fgf8a (ENSTNIG00000006362) #22	fbxw4 (ENSTNIG00000005242) #23	wbp1la (ENSTNIG00000005241)	RNF166 (ENSTNIG00000004433)	ENSTNIG00000004434	cyp17a1 (ENSTNIG00000019678)	ENSTNIG00000005961	ENSTNIG00000005463	FAM98A (ENSTNIG00000005464)	vps8 (ENSTNIG00000005465)	ENSTNIG00000000969	ENSTNIG00000018675	ENSTNIG00000019603	DCTN6 (ENSTNIG00000005141)	gtf2e2 (ENSTNIG00000005140)	ADGRL3 (ENSTNIG00000005139)
Eupecaria_A	ANCESTRAL SPECIES	26	ENSGT00940000157361.b	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Ballan wrasse	MODERN SPECIES	111														ENSLBEG00000015696	slc2a15a (ENSLBEG00000015627)	fgf8a (ENSLBEG00000015574) #22	fbxw4 (ENSLBEG00000015525) #23	nt5c2a (ENSLBEG00000015434)	borcs7 (ENSLBEG00000015388)	cyp17a1 (ENSLBEG00000015352)	ENSLBEG00000015337	RNF166 (ENSLBEG00000015305)	ctu2 (ENSLBEG00000015265)	cdk1 (ENSLBEG00000015219)	HNRNPLL (ENSLBEG00000015146)	galm (ENSLBEG00000015118)	NDST2 (ENSLBEG00000015032)	ENSLBEG00000014981	polr1c (ENSLBEG00000014925)	fbxo28 (ENSLBEG00000014896)	degs1 (ENSLBEG00000014879)
Eupecaria_B	ANCESTRAL SPECIES	26	ENSGT00940000157361.b	ENSGT00940000170402	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000154866.B.a	ENSGT00940000166683.b	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Eupecaria_C	ANCESTRAL SPECIES	28								ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	32								ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154681.a.f	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
European seabass	MODERN SPECIES	1	ENSDLAG00005024315	zswim8 (ENSDLAG00005024615)	ENSDLAG00005024847	chchd1 (ENSDLAG00005024851)	ENSDLAG00005024856	ENSDLAG00005024859	ENSDLAG00005026589	ENSDLAG00005004598	ENSDLAG00005004892	ENSDLAG00005004953	ENSDLAG00005005676	ENSDLAG00005033963	tlx1 (ENSDLAG00005030787) #29	ENSDLAG00005026816	slc2a15a (ENSDLAG00005005837)	fgf8a (ENSDLAG00005005948) #22	fbxw4 (ENSDLAG00005034129) #23	nt5c2a (ENSDLAG00005006205)	ENSDLAG00005007486	cyp17a1 (ENSDLAG00005007508)	ENSDLAG00005007814	ENSDLAG00005034886	ENSDLAG00005034809	ENSDLAG00005026678	ENSDLAG00005007835	ENSDLAG00005028275	ENSDLAG00005031885	macroh2a2 (ENSDLAG00005007863)	ENSDLAG00005007951 #9	pitx3 (ENSDLAG00005031960)	PNLIPRP2 (ENSDLAG00005010610)
Large yellow croaker	MODERN SPECIES	41												ENSLCRG00005019009	ENSLCRG00005019008	ENSLCRG00005019006	slc2a15a (ENSLCRG00005018906)	fgf8a (ENSLCRG00005018897) #22	ENSLCRG00005018894	ENSLCRG00005018891	fbxw4 (ENSLCRG00005018885) #23	wbp1la (ENSLCRG00005018881)	nt5c2a (ENSLCRG00005018403)	borcs7 (ENSLCRG00005018388)	cyp17a1 (ENSLCRG00005018139)	snai2 (ENSLCRG00005018137)	RNF166 (ENSLCRG00005018136)	ENSLCRG00005018135	ctu2 (ENSLCRG00005018133)	cdk1 (ENSLCRG00005018132)	HNRNPLL (ENSLCRG00005017337)	galm (ENSLCRG00005017335)	ENSLCRG00005017333
Gilthead seabream	MODERN SPECIES	6	plek (ENSSAUG00010018664)	pcdh15a (ENSSAUG00010018569)	dkk1a (ENSSAUG00010018568)	prkg1a (ENSSAUG00010018558)	sgms1a (ENSSAUG00010018552)	ENSSAUG00010018551	tm9sf2 (ENSSAUG00010016346)	PIEZO1 (ENSSAUG00010012919)	CDT1 (ENSSAUG00010012881)	aprt (ENSSAUG00010012880)	ENSSAUG00010012878	SDHAF4 (ENSSAUG00010012877)	tlx1 (ENSSAUG00010017774) #29	ENSSAUG00010017772	slc2a15a (ENSSAUG00010017768)	fgf8a (ENSSAUG00010017764) #22	fbxw4 (ENSSAUG00010017756) #23	ENSSAUG00010017755	nt5c2a (ENSSAUG00010017736)	borcs7 (ENSSAUG00010017727)	cyp17a1 (ENSSAUG00010017711)	ENSSAUG00010017709	RNF166 (ENSSAUG00010017708)	ctu2 (ENSSAUG00010017706)	cdk1 (ENSSAUG00010017703)	HNRNPLL (ENSSAUG00010016743)	ENSSAUG00010016731	galm (ENSSAUG00010016722)	ENSSAUG00010016716	CALHM3 (ENSSAUG00010016715)	hells (ENSSAUG00010016711)
Perciformes	ANCESTRAL SPECIES	40						ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.n #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999	ENSGT00940000156237
Cottioidei	ANCESTRAL SPECIES	36	ENSGT00940000161556	ENSGT00940000153441.a.b	ENSGT00390000000403	ENSGT00940000159406	ENSGT00940000159378	ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.n #23	ENSGT00950000183109.c.a.a.a.a
Stickleback	MODERN SPECIES	6	slc1a4 (ENSGACG00000003961)	sertad2b (ENSGACG00000003958)	ENSGACG00000003951	mxtx1 (ENSGACG00000003944)	ncapd3 (ENSGACG00000003922)	calhm2.1 (ENSGACG00000003917)	CALHM3 (ENSGACG00000003915)	hells (ENSGACG00000003897)	rab1ab (ENSGACG00000003864)	ENSGACG00000003862	ENSGACG00000003861	tlx1 (ENSGACG00000003860) #29	ENSGACG00000003856	ENSGACG00000003848	slc2a15a (ENSGACG00000003828)	fgf8a (ENSGACG00000003803) #22	fbxw4 (ENSGACG00000003785) #23	wbp1la (ENSGACG00000003782)	srfb (ENSGACG00000003778)	fhip2a (ENSGACG00000003758)	ablim1a (ENSGACG00000003725)	ENSGACG00000003723	ENSGACG00000003705	HERC4 (ENSGACG00000003677)	ENSGACG00000003675	mlh1 (ENSGACG00000003638)	lrrfip2 (ENSGACG00000003611)	dact2 (ENSGACG00000003607)	SMOC2 (ENSGACG00000003595)	eif3s6ip (ENSGACG00000003516)	vsir (ENSGACG00000003502)
Lumpfish	MODERN SPECIES	6	MYPN (ENSCLMG00005005447)	CACUL1 (ENSCLMG00005005444)	ENSCLMG00005005435	dnajc12 (ENSCLMG00005005429)	ncapd3 (ENSCLMG00005005143)	calhm2.1 (ENSCLMG00005005127)	CALHM3 (ENSCLMG00005005124)	hells (ENSCLMG00005005103)	ENSCLMG00005005100	rab1ab (ENSCLMG00005005090)	cep68 (ENSCLMG00005005087)	tlx1 (ENSCLMG00005005077) #29	ENSCLMG00005005075	ENSCLMG00005005071	slc2a15a (ENSCLMG00005005070)	fgf8a (ENSCLMG00005005067) #22	fbxw4 (ENSCLMG00005005066) #23	wbp1la (ENSCLMG00005005063)	ENSCLMG00005005062	ENSCLMG00005005055	ENSCLMG00005005051	RIMS1 (ENSCLMG00005004792)	asrgl1 (ENSCLMG00005004693)	OGFRL1 (ENSCLMG00005004666)	b3gat2 (ENSCLMG00005004656)	ENSCLMG00005004647	slc1a4 (ENSCLMG00005004397)	sertad2b (ENSCLMG00005004355)	INA (ENSCLMG00005022572)	pcgf6 (ENSCLMG00005022564)	ENSCLMG00005022562
Perciformes_a	ANCESTRAL SPECIES	35						ENSGT00940000153566.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000155078.a.b.a.b	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029.n #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000163289.b.a.b	ENSGT00390000015849	ENSGT00940000155588.b	ENSGT00940000154511.a	ENSGT00950000182909.b.b.b	ENSGT00390000008797	ENSGT00940000153335.a.b	ENSGT01030000234642.a.b.b.d.a.e	ENSGT00510000047589	ENSGT00390000014293.b	ENSGT00390000007683	ENSGT00940000164412.a.a.a	ENSGT00940000156999
Pike perch	MODERN SPECIES	193					ncapd3 (ENSSLUG00000022558)	calhm2.1 (ENSSLUG00000022728)	CALHM3 (ENSSLUG00000022731)	hells (ENSSLUG00000022754)	rab1ab (ENSSLUG00000022817)	ENSSLUG00000022929	ENSSLUG00000022937	tlx1 (ENSSLUG00000022940) #29	ENSSLUG00000022945	ENSSLUG00000022951	slc2a15a (ENSSLUG00000022955)	fgf8a (ENSSLUG00000022963) #22	fbxw4 (ENSSLUG00000022969) #23	wbp1la (ENSSLUG00000022974)	ENSSLUG00000022977	nt5c2a (ENSSLUG00000023014)	borcs7 (ENSSLUG00000023402)	cyp17a1 (ENSSLUG00000023412)	ENSSLUG00000023478	ENSSLUG00000023481	RNF166 (ENSSLUG00000023484)	ctu2 (ENSSLUG00000023491)	cdk1 (ENSSLUG00000023513)	HNRNPLL (ENSSLUG00000023530)	galm (ENSSLUG00000023548)	ENSSLUG00000023558
Channel bull blenny	MODERN SPECIES	6										ENSCGOG00000012658	ENSCGOG00000012659	ENSCGOG00000012664	tlx1 (ENSCGOG00000012667) #29	ENSCGOG00000012669	slc2a15a (ENSCGOG00000012675)	fgf8a (ENSCGOG00000012691) #22	fbxw4 (ENSCGOG00000012699) #23	wbp1la (ENSCGOG00000012704)	ENSCGOG00000012706 #23	ctu2 (ENSCGOG00000012712)	ENSCGOG00000012952	cyp17a1 (ENSCGOG00000013001)	borcs7 (ENSCGOG00000013875)	nt5c2a (ENSCGOG00000013879)	cdk1 (ENSCGOG00000014119)	ENSCGOG00000014412	chchd1 (ENSCGOG00000014426)	ENSCGOG00000014432	ENSCGOG00000014448	polr1c (ENSCGOG00000014458)	fbxo28 (ENSCGOG00000014578)
Pinecone sodierfish	MODERN SPECIES	6	hells (ENSMMDG00005024554)	CALHM3 (ENSMMDG00005024557)	calhm2.1 (ENSMMDG00005024558)	ENSMMDG00005024559	pcgf6 (ENSMMDG00005024561)	inaa (ENSMMDG00005024563)	ENSMMDG00005024565	ENSMMDG00005024566	ENSMMDG00005024569	pcgf5a (ENSMMDG00005024571)	cep68 (ENSMMDG00005024573)	ENSMMDG00005024574	tlx1 (ENSMMDG00005024575) #29	ENSMMDG00005024576	slc2a15a (ENSMMDG00005024578)	fgf8a (ENSMMDG00005024579) #22	fbxw4 (ENSMMDG00005024581) #23	wbp1la (ENSMMDG00005024583)	cyp17a1 (ENSMMDG00005024584)	borcs7 (ENSMMDG00005024585)	nt5c2a (ENSMMDG00005024586)	MCM8 (ENSMMDG00005024587)	crls1 (ENSMMDG00005024634)	ENSMMDG00005024635	ENSMMDG00005024636	napba (ENSMMDG00005006966)	cdc5l (ENSMMDG00005006968)	supt3h (ENSMMDG00005006972)	ENSMMDG00005006975	ENSMMDG00005006983	gja5b (ENSMMDG00005007346)
Cod	MODERN SPECIES	6	ENSGMOG00000009032	ENSGMOG00000033058	ADAM12 (ENSGMOG00000002539)	ENSGMOG00000019873	ENSGMOG00000037183	DHX32 (ENSGMOG00000029453)	EDRF1 (ENSGMOG00000004831)	ENSGMOG00000036040	zgc:153169 (ENSGMOG00000036949)	ENSGMOG00000004888	cep68 (ENSGMOG00000032092)	ENSGMOG00000027921	tlx1 (ENSGMOG00000014671) #29	ENSGMOG00000016612	slc2a15a (ENSGMOG00000016589)	fgf8a (ENSGMOG00000015070) #22	fbxw4 (ENSGMOG00000015043) #23	ENSGMOG00000004318	cyp17a1 (ENSGMOG00000011243)	borcs7 (ENSGMOG00000011250)	ENSGMOG00000011257	nt5c2a (ENSGMOG00000016201)	ENSGMOG00000025368	ENSGMOG00000034043	ptena (ENSGMOG00000032805)	papss2a (ENSGMOG00000011763)	minpp1a (ENSGMOG00000011756)	sgms1a (ENSGMOG00000036184)	prkg1a (ENSGMOG00000025236)	ENSGMOG00000029733	pcdh15a (ENSGMOG00000001305)
Protacanthopterygii	ANCESTRAL SPECIES	88						ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a	ENSGT00950000183027.a.b.c.a	ENSGT00950000183054.b.d	ENSGT00940000155571.A	ENSGT00810000125473.A	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611.a.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b	ENSGT00740000115593	ENSGT00940000167270	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000158120
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	82	ENSGT00940000155061.a.b.k.a.m #7	ENSGT00940000164992.k	ENSGT00950000183175.A.d.a.b.b	ENSGT01030000234633.C.a.b	ENSGT00940000156225.z	ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a.d	ENSGT00940000155571.A.g.b	ENSGT00950000183027.a.b.c.a.a	ENSGT00950000183054.b.d.i	ENSGT00940000155078.a.b.a.b.g.b	ENSGT00810000125473.A.d	ENSGT00390000009155.c	ENSGT00940000158698.b.b #29	ENSGT00940000164611.a.b.b	ENSGT00940000159518.a.c #22	ENSGT00390000005029.h #23	ENSGT00940000158034.r	ENSGT00940000166025.b.a	ENSGT00740000115593.d	ENSGT01030000234610.b.a.b.b	ENSGT00940000167270.e	ENSGT00940000154865	ENSGT01000000215701	ENSGT00940000158120.i	ENSGT00940000156925.v.k.a #9	ENSGT00940000156925.v.l #9	ENSGT00940000154518.b.d	ENSGT00940000154551.b.l.a	ENSGT00950000182805.a.b	ENSGT00940000155068.a.b.d
Salmoninae_a	ANCESTRAL SPECIES	16	ENSGT00940000164992.k	ENSGT00390000000854.c.b.e.b	ENSGT00950000183175.A.d.a.b.b	ENSGT01030000234633.C.a.b	ENSGT00940000156225.z	ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a.d	ENSGT00940000155571.A.g.b	ENSGT00950000183027.a.b.c.a.a	ENSGT00950000183054.b.d.i	ENSGT00940000155078.a.b.a.b.g.b	ENSGT00810000125473.A.d	ENSGT00390000009155.c	ENSGT00940000158698.b.b #29	ENSGT00940000164611.a.b.b	ENSGT00940000159518.a.c #22	ENSGT00390000005029.h #23	ENSGT00940000158034.r	ENSGT00940000166025.b.a	ENSGT00740000115593.d	ENSGT01030000234610.b.a.b.b.c	ENSGT00940000167270.e	ENSGT00940000154865.vb.a	ENSGT00940000158120.i	ENSGT00940000156925.v.k.a #9	ENSGT00940000154518.b.d	ENSGT00940000154551.b.l.a	ENSGT00950000182805.a.b	ENSGT00940000155068.a.b.d	ENSGT00940000161152.d	ENSGT01030000234606.a.a.a.b.j
Salmo	ANCESTRAL SPECIES	23	ENSGT00940000164992.k	ENSGT00390000000854.c.b.e.b	ENSGT00950000183175.A.d.a.b.b	ENSGT01030000234633.C.a.b	ENSGT00940000156225.z	ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a.d	ENSGT00940000155571.A.g.b	ENSGT00950000183027.a.b.c.a.a	ENSGT00950000183054.b.d.i	ENSGT00940000155078.a.b.a.b.g.b	ENSGT00810000125473.A.d	ENSGT00390000009155.c	ENSGT00940000158698.b.b #29	ENSGT00940000164611.a.b.b	ENSGT00940000159518.a.c #22	ENSGT00390000005029.h #23	ENSGT00940000158034.r	ENSGT00940000166025.b.a	ENSGT00740000115593.d	ENSGT01030000234610.b.a.b.b.c	ENSGT00940000167270.e	ENSGT00940000154865.vb.a	ENSGT00940000158120.i	ENSGT00940000156925.v.k.a #9	ENSGT00940000154518.b.d	ENSGT00940000154551.b.l.a	ENSGT00950000182805.a.b	ENSGT00940000155068.a.b.d	ENSGT00940000161152.d	ENSGT00700000104522.d
Atlantic salmon	MODERN SPECIES		SNCG (ENSSSAG00000066209)	mmrn2a (ENSSSAG00000066228)	bmpr1aa (ENSSSAG00000066270)	ldb3a (ENSSSAG00000067860)	opn4a (ENSSSAG00000067894)	usp54a (ENSSSAG00000067930)	ENSSSAG00000103442	myoz1a (ENSSSAG00000068303)	ENSSSAG00000112156	ENSSSAG00000068314	RAB1A (ENSSSAG00000090451)	ENSSSAG00000068334	ENSSSAG00000109421	tlx1 (ENSSSAG00000068344) #29	ENSSSAG00000094428	fgf8a (ENSSSAG00000068350) #22	fbxw4 (ENSSSAG00000068356) #23	ENSSSAG00000108556	ENSSSAG00000068371	ENSSSAG00000068387	ENSSSAG00000069017	ENSSSAG00000069079	ENSSSAG00000000766 #9	macroh2a2 (ENSSSAG00000069088)	ENSSSAG00000001804	hspa12a (ENSSSAG00000075965)	eno4 (ENSSSAG00000001960)	ENSSSAG00000001970	VATB2 (ENSSSAG00000001987)	vax1 (ENSSSAG00000082494)	kcnk18 (ENSSSAG00000002025)
River trout	MODERN SPECIES	9	nfkb2 (ENSSTUG00000030346)	glud1a (ENSSTUG00000030436)	SNCG (ENSSTUG00000030733)	mmrn2a (ENSSTUG00000030752)	bmpr1aa (ENSSTUG00000030770)	ldb3a (ENSSTUG00000031482)	opn4a (ENSSTUG00000031800)	myoz1a (ENSSTUG00000031839)	SYNPO2L (ENSSTUG00000031861)	zgc:153169 (ENSSTUG00000031867)	ENSSTUG00000031891	cep68 (ENSSTUG00000032111)	ENSSTUG00000032122	tlx1 (ENSSTUG00000032131) #29	ENSSTUG00000032153	fgf8a (ENSSTUG00000032164) #22	fbxw4 (ENSSTUG00000032200) #23	pcgf6 (ENSSTUG00000032319)	ENSSTUG00000032338	hells (ENSSTUG00000032377)	CALHM3 (ENSSTUG00000033080)	ENSSTUG00000033111	macroh2a2 (ENSSTUG00000033196)	GBF1 (ENSSTUG00000033240) #9	pitx3 (ENSSTUG00000033791)	hspa12a (ENSSTUG00000033806)	eno4 (ENSSTUG00000034029)	ENSSTUG00000034039	atp6v1ba (ENSSTUG00000034054)	vax1 (ENSSTUG00000034155)	kcnk18 (ENSSTUG00000034165)
Oncorhynchus	ANCESTRAL SPECIES	17	ENSGT00390000000854.c.b.e.b	ENSGT00950000183175.A.d.a.b.b	ENSGT01030000234633.C.a.b	ENSGT00940000156225.z	ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a.d	ENSGT00940000155571.A.g.b	ENSGT00950000183027.a.b.c.a.a	ENSGT00950000183054.b.d.i	ENSGT00950000183045.C.mb.b	ENSGT00940000155078.a.b.a.b.g.b	ENSGT00810000125473.A.d	ENSGT00390000009155.c	ENSGT00940000158698.b.b #29	ENSGT00940000164611.a.b.b	ENSGT00940000159518.a.c #22	ENSGT00390000005029.h #23	ENSGT00940000158034.r	ENSGT00940000166025.b.a	ENSGT00740000115593.d	ENSGT01030000234610.b.a.b.b.c	ENSGT00940000167270.e	ENSGT00940000154865.vb.a	ENSGT00940000158120.i	ENSGT00940000156925.v.k.a #9	ENSGT00940000154518.b.d	ENSGT00940000154551.b.l.a	ENSGT00950000182805.a.b	ENSGT00940000155068.a.b.d	ENSGT00940000161152.d	ENSGT01030000234606.a.a.a.b.j
Oncorhynchus_a	ANCESTRAL SPECIES	13	ENSGT00390000000854.c.b.e.b	ENSGT00950000183175.A.d.a.b.b	ENSGT01030000234633.C.a.b	ENSGT00940000156225.z	ENSGT00940000154877.B.a.a	ENSGT01100000263502.B.a.a.d.a.a.d	ENSGT00940000155571.A.g.b	ENSGT00950000183027.a.b.c.a.a	ENSGT00950000183054.b.d.i	ENSGT00950000183045.C.mb.b	ENSGT00940000155078.a.b.a.b.g.b	ENSGT00810000125473.A.d	ENSGT00390000009155.c	ENSGT00940000158698.b.b #29	ENSGT00940000164611.a.b.b	ENSGT00940000159518.a.c #22	ENSGT00390000005029.h #23	ENSGT00940000158034.r	ENSGT00940000166025.b.a	ENSGT00740000115593.d	ENSGT01030000234610.b.a.b.b.c	ENSGT00940000167270.e	ENSGT00940000158120.i	ENSGT00940000156925.v.k.a #9	ENSGT00940000154518.b.d	ENSGT00940000154551.b.l.a	ENSGT00950000182805.a.b	ENSGT00940000155068.a.b.d	ENSGT00940000161152.d	ENSGT01030000234606.a.a.a.b.j	ENSGT00700000104522.d
Coho salmon	MODERN SPECIES	2	nfkb2 (ENSOKIG00005048514)	glud1a (ENSOKIG00005048374)	SNCG (ENSOKIG00005048349)	mmrn2a (ENSOKIG00005048348)	bmpr1aa (ENSOKIG00005048228)	ldb3a (ENSOKIG00005048125)	opn4a (ENSOKIG00005048102)	myoz1a (ENSOKIG00005048094)	SYNPO2L (ENSOKIG00005048087)	zgc:153169 (ENSOKIG00005048056)	ENSOKIG00005048047	ENSOKIG00005048043	tlx1 (ENSOKIG00005048040) #29	ENSOKIG00005048037	ENSOKIG00005048035	fgf8a (ENSOKIG00005048027) #22	fbxw4 (ENSOKIG00005047999) #23	ENSOKIG00005047981	ENSOKIG00005047965	hells (ENSOKIG00005047721)	CALHM3 (ENSOKIG00005047689)	ENSOKIG00005047665	ENSOKIG00005047628	ENSOKIG00005047612	macroh2a2 (ENSOKIG00005047591)	GBF1 (ENSOKIG00005047404) #9	pitx3 (ENSOKIG00005047372)	hspa12a (ENSOKIG00005047314)	eno4 (ENSOKIG00005047294)	atp6v1ba (ENSOKIG00005047038)	vax1 (ENSOKIG00005046994)
Chinook salmon	MODERN SPECIES		glud1a (ENSOTSG00005005296)	sncgb (ENSOTSG00005006003)	mmrn2a (ENSOTSG00005006005)	bmpr1aa (ENSOTSG00005006028)	ldb3a (ENSOTSG00005008616)	opn4a (ENSOTSG00005008620)	usp54a (ENSOTSG00005008635)	myoz1a (ENSOTSG00005008636)	SYNPO2L (ENSOTSG00005008637)	zgc:153169 (ENSOTSG00005008639)	ENSOTSG00005008641	cep68 (ENSOTSG00005008645)	ENSOTSG00005008646	tlx1 (ENSOTSG00005008647) #29	ENSOTSG00005008648	fgf8a (ENSOTSG00005008649) #22	fbxw4 (ENSOTSG00005008650) #23	pcgf6 (ENSOTSG00005008656)	ENSOTSG00005008658	hells (ENSOTSG00005008668)	ENSOTSG00005009960	macroh2a2 (ENSOTSG00005010028)	GBF1 (ENSOTSG00005010041) #9	pitx3 (ENSOTSG00005010053)	hspa12a (ENSOTSG00005010059)	eno4 (ENSOTSG00005010082)	atp6v1ba (ENSOTSG00005010104)	vax1 (ENSOTSG00005013057)	ENSOTSG00005013059	kcnk18 (ENSOTSG00005013061)	slc18a2 (ENSOTSG00005013064)
Rainbow trout	MODERN SPECIES	15	mmrn2a (ENSOMYG00000040901)	bmpr1aa (ENSOMYG00000041006)	ldb3a (ENSOMYG00000042037)	ENSOMYG00000059037	opn4a (ENSOMYG00000042134)	usp54a (ENSOMYG00000042157)	myoz1a (ENSOMYG00000042165)	ENSOMYG00000069512	ENSOMYG00000042176	ENSOMYG00000042180	ENSOMYG00000042216	ENSOMYG00000042335	ENSOMYG00000042337	tlx1 (ENSOMYG00000042338) #29	ENSOMYG00000042342	fgf8a (ENSOMYG00000042351) #22	fbxw4 (ENSOMYG00000042367) #23	ENSOMYG00000042394	ENSOMYG00000042401	ENSOMYG00000042443	ENSOMYG00000042758	ENSOMYG00000042781	ENSOMYG00000077179	macroh2a2 (ENSOMYG00000042807)	ENSOMYG00000042851 #9	ENSOMYG00000059612	pitx3 (ENSOMYG00000042905)	hspa12a (ENSOMYG00000026525)	eno4 (ENSOMYG00000026607)	ENSOMYG00000077730	atp6v1ba (ENSOMYG00000027282)
Huchen	MODERN SPECIES	122	mmrn2a (ENSHHUG00000034393)	bmpr1aa (ENSHHUG00000034314)	ldb3a (ENSHHUG00000034284)	opn4a (ENSHHUG00000034263)	ENSHHUG00000034256	ENSHHUG00000034254	ENSHHUG00000034253	myoz1a (ENSHHUG00000034248)	SYNPO2L (ENSHHUG00000034243)	zgc:153169 (ENSHHUG00000034231)	ENSHHUG00000033859	cep68 (ENSHHUG00000033851)	ENSHHUG00000033850	tlx1 (ENSHHUG00000033847) #29	ENSHHUG00000033846	fgf8a (ENSHHUG00000033818) #22	ENSHHUG00000033805	ENSHHUG00000033802	pcgf6 (ENSHHUG00000033799)	ENSHHUG00000033727	hells (ENSHHUG00000033611)	CALHM3 (ENSHHUG00000033600)	ENSHHUG00000033576	ENSHHUG00000033542	ENSHHUG00000033537	macroh2a2 (ENSHHUG00000033523)	ENSHHUG00000033244 #9
Salmoninae	ANCESTRAL SPECIES	243								ENSGT00950000183027.a.b.c.a.b	ENSGT00950000183054.b.d.j	ENSGT00940000155078.a.b.a.b.g.a.b	ENSGT00810000125473.A.c	ENSGT00390000009155.d	ENSGT00940000158698.b.a #29	ENSGT00940000164611.a.b.a	ENSGT00940000164095.a	ENSGT00940000159518.a.d #22	ENSGT00390000005029.g #23	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034.q	ENSGT00940000166025.b.b	ENSGT01030000234610.b.a.a	ENSGT00740000115593.c	ENSGT00940000167270.f	ENSGT00940000158302.d.a.j.b	ENSGT00940000158120.j	ENSGT00940000156925.v.k.b #9	ENSGT00940000154518.b.c
Huchen	MODERN SPECIES	245								myoz1a (ENSHHUG00000049085)	SYNPO2L (ENSHHUG00000049075)	ENSHHUG00000048912	cep68 (ENSHHUG00000048907)	ENSHHUG00000048904	tlx1 (ENSHHUG00000048896) #29	ENSHHUG00000048893	slc2a15a (ENSHHUG00000048880)	fgf8a (ENSHHUG00000048858) #22	fbxw4 (ENSHHUG00000048838) #23	ENSHHUG00000048835	cyp17a1 (ENSHHUG00000048782)	borcs7 (ENSHHUG00000048776)	nt5c2a (ENSHHUG00000048746)	inaa (ENSHHUG00000048740)	pcgf6 (ENSHHUG00000048735)	ENSHHUG00000048723	calhm2.1 (ENSHHUG00000048720)	hells (ENSHHUG00000048559)	ENSHHUG00000048503	ENSHHUG00000048493	macroh2a2 (ENSHHUG00000048480)	ENSHHUG00000048452 #9	pitx3 (ENSHHUG00000048444)
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT01030000234633.C.a.a	ENSGT00940000156225.y	ENSGT00940000154877.B.a.b	ENSGT00940000154877.C.kb	ENSGT01100000263502.B.a.a.d.a.a.c	ENSGT00940000163377.a.b.b.b	ENSGT00940000155571.A.g.a	ENSGT00950000183027.a.b.c.a.b	ENSGT00950000183054.b.d.j	ENSGT00940000155078.a.b.a.b.g.a.b	ENSGT00810000125473.A.c	ENSGT00390000009155.d	ENSGT00940000158698.b.a #29	ENSGT00940000164611.a.b.a	ENSGT00940000164095.a	ENSGT00940000159518.a.d #22	ENSGT00390000005029.g #23	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034.q	ENSGT00940000166025.b.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b.d	ENSGT00740000115593.c	ENSGT00940000167270.f	ENSGT00940000154865.vb.b	ENSGT00940000158120.j	ENSGT00940000156925.v.k.b #9	ENSGT00940000154518.b.c
Salmo	ANCESTRAL SPECIES	29	ENSGT01030000234633.C.a.a	ENSGT00940000156225.y	ENSGT00940000154877.B.a.b	ENSGT00940000154877.C.kb	ENSGT01100000263502.B.a.a.d.a.a.c	ENSGT00940000163377.a.b.b.b	ENSGT00940000155571.A.g.a	ENSGT00950000183027.a.b.c.a.b	ENSGT00950000183054.b.d.j	ENSGT00940000155078.a.b.a.b.g.a.b	ENSGT00810000125473.A.c	ENSGT00390000009155.d	ENSGT00940000158698.b.a #29	ENSGT00940000164611.a.b.a	ENSGT00940000164095.a	ENSGT00940000159518.a.d #22	ENSGT00390000005029.g #23	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034.q	ENSGT00940000166025.b.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b.d	ENSGT00740000115593.c	ENSGT00940000167270.f	ENSGT00940000154865.vb.b	ENSGT00940000158120.j	ENSGT00940000156925.v.k.b #9	ENSGT00940000154518.b.c
River trout	MODERN SPECIES	35	mmrn2a (ENSSTUG00000008241)	bmpr1aa (ENSSTUG00000008113)	ldb3a (ENSSTUG00000008096)	ENSSTUG00000008072	opn4a (ENSSTUG00000007915)	usp54a (ENSSTUG00000007892)	myoz1a (ENSSTUG00000007881)	SYNPO2L (ENSSTUG00000007875)	ENSSTUG00000007860	ENSSTUG00000007786	cep68 (ENSSTUG00000007773)	ENSSTUG00000007767	tlx1 (ENSSTUG00000007752) #29	ENSSTUG00000007746	slc2a15a (ENSSTUG00000007570)	fgf8a (ENSSTUG00000007553) #22	fbxw4 (ENSSTUG00000007530) #23	cyp17a1 (ENSSTUG00000007509)	borcs7 (ENSSTUG00000007494)	nt5c2a (ENSSTUG00000006989)	inaa (ENSSTUG00000006947)	pcgf6 (ENSSTUG00000006916)	ENSSTUG00000006905	calhm2.1 (ENSSTUG00000006901)	CALHM3 (ENSSTUG00000006872)	hells (ENSSTUG00000005197)	ENSSTUG00000005002	ENSSTUG00000004984	macroh2a2 (ENSSTUG00000004938)	GBF1 (ENSSTUG00000004539) #9	pitx3 (ENSSTUG00000004502)
Atlantic salmon	MODERN SPECIES	9	SNCG (ENSSSAG00000111421)	mmrn2 (ENSSSAG00000069040)	bmpr1aa (ENSSSAG00000069050)	ldb3a (ENSSSAG00000069409)	opn4a (ENSSSAG00000069504)	ENSSSAG00000069529	usp54a (ENSSSAG00000069536)	myoz1a (ENSSSAG00000069550)	ENSSSAG00000069555	ENSSSAG00000069556	ENSSSAG00000069562	ENSSSAG00000069615	ENSSSAG00000069622	ENSSSAG00000069628 #29	slc2a15a (ENSSSAG00000069641)	fgf8a (ENSSSAG00000098674) #22	fbxw4 (ENSSSAG00000069868) #23	cyp17a1 (ENSSSAG00000069890)	borcs7 (ENSSSAG00000119087)	nt5c2a (ENSSSAG00000069977)	inaa (ENSSSAG00000072742)	pcgf6 (ENSSSAG00000072746)	ENSSSAG00000101552	ENSSSAG00000072757	ENSSSAG00000072792	ENSSSAG00000085939	ENSSSAG00000074124	ENSSSAG00000074170	ENSSSAG00000074264 #9	H2AW (ENSSSAG00000074192)	ENSSSAG00000075958
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00950000183175.A.d.a.b.a	ENSGT01030000234633.C.a.a	ENSGT00940000156225.y	ENSGT00940000154877.B.a.b	ENSGT01100000263502.B.a.a.d.a.a.c	ENSGT00940000163377.a.b.b.b	ENSGT00940000155571.A.g.a	ENSGT00950000183027.a.b.c.a.b	ENSGT00950000183054.b.d.j	ENSGT00940000155078.a.b.a.b.g.a.b	ENSGT00810000125473.A.c	ENSGT00390000009155.d	ENSGT00940000158698.b.a #29	ENSGT00940000164611.a.b.a	ENSGT00940000164095.a	ENSGT00940000159518.a.d #22	ENSGT00390000005029.g #23	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034.q	ENSGT00940000166025.b.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b.d	ENSGT00740000115593.c	ENSGT00940000167270.f	ENSGT00940000158302.d.a.j.b	ENSGT00940000158120.j	ENSGT00940000156925.v.k.b #9	ENSGT00940000154518.b.c
Rainbow trout	MODERN SPECIES		SNCG (ENSOMYG00000002650)	mmrn2a (ENSOMYG00000002687)	bmpr1aa (ENSOMYG00000002792)	ldb3a (ENSOMYG00000002905)	opn4a (ENSOMYG00000003022)	usp54a (ENSOMYG00000003214)	ENSOMYG00000051133	myoz1a (ENSOMYG00000003276)	ENSOMYG00000003305	ENSOMYG00000003446	ENSOMYG00000003583	ENSOMYG00000003606	tlx1 (ENSOMYG00000003624) #29	ENSOMYG00000003660	slc2a15a (ENSOMYG00000003788)	fgf8a (ENSOMYG00000060026) #22	fbxw4 (ENSOMYG00000003974) #23	cyp17a1 (ENSOMYG00000004006)	borcs7 (ENSOMYG00000004037)	nt5c2a (ENSOMYG00000004691)	inaa (ENSOMYG00000005199)	pcgf6 (ENSOMYG00000005228)	ENSOMYG00000005272	ENSOMYG00000005291	ENSOMYG00000005308	hells (ENSOMYG00000005852)	ENSOMYG00000006563	ENSOMYG00000073245	macroh2a2 (ENSOMYG00000006631)	ENSOMYG00000007886 #9	pitx3 (ENSOMYG00000009122)
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00950000183175.A.d.a.b.a	ENSGT01030000234633.C.a.a	ENSGT00940000156225.y	ENSGT00940000154877.B.a.b	ENSGT01100000263502.B.a.a.d.a.a.c	ENSGT00940000163377.a.b.b.b	ENSGT00940000155571.A.g.a	ENSGT00950000183027.a.b.c.a.b	ENSGT00950000183054.b.d.j	ENSGT00940000155078.a.b.a.b.g.a.b	ENSGT00810000125473.A.c	ENSGT00390000009155.d	ENSGT00940000158698.b.a #29	ENSGT00940000164611.a.b.a	ENSGT00940000164095.a	ENSGT00940000159518.a.d #22	ENSGT00390000005029.g #23	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.a	ENSGT00940000158034.q	ENSGT00940000166025.b.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.b.d	ENSGT00740000115593.c	ENSGT00940000167270.f	ENSGT00940000158120.j	ENSGT00940000156925.v.k.b #9	ENSGT00940000154518.b.c	ENSGT00940000154551.b.l.b
Coho salmon	MODERN SPECIES	24	SNCG (ENSOKIG00005007088)	mmrn2a (ENSOKIG00005007137)	bmpr1aa (ENSOKIG00005007168)	ldb3a (ENSOKIG00005007339)	opn4a (ENSOKIG00005007429)	ENSOKIG00005007463	usp54a (ENSOKIG00005007541)	myoz1a (ENSOKIG00005007586)	SYNPO2L (ENSOKIG00005007597)	ENSOKIG00005007623	cep68 (ENSOKIG00005007798)	ENSOKIG00005007807	tlx1 (ENSOKIG00005007814) #29	ENSOKIG00005007829	slc2a15a (ENSOKIG00005007891)	fgf8a (ENSOKIG00005008657) #22	fbxw4 (ENSOKIG00005008688) #23	cyp17a1 (ENSOKIG00005008708)	borcs7 (ENSOKIG00005008726)	nt5c2a (ENSOKIG00005008775)	inaa (ENSOKIG00005009179)	pcgf6 (ENSOKIG00005009188)	ENSOKIG00005009221	calhm2.1 (ENSOKIG00005009238)	ENSOKIG00005009251	hells (ENSOKIG00005009326)	ENSOKIG00005009572	ENSOKIG00005009632	ENSOKIG00005009641	macroh2a2 (ENSOKIG00005009648)	GBF1 (ENSOKIG00005009693) #9
Chinook salmon	MODERN SPECIES	30	SNCG (ENSOTSG00005034638)	mmrn2a (ENSOTSG00005034639)	bmpr1aa (ENSOTSG00005034641)	ldb3a (ENSOTSG00005035085)	opn4a (ENSOTSG00005035201)	ENSOTSG00005035203	usp54a (ENSOTSG00005035271)	myoz1a (ENSOTSG00005035341)	SYNPO2L (ENSOTSG00005035343)	ENSOTSG00005035345	cep68 (ENSOTSG00005035576)	ENSOTSG00005035578	tlx1 (ENSOTSG00005035580) #29	ENSOTSG00005035582	slc2a15a (ENSOTSG00005035584)	fgf8a (ENSOTSG00005035753) #22	fbxw4 (ENSOTSG00005035754) #23	cyp17a1 (ENSOTSG00005035756)	borcs7 (ENSOTSG00005035757)	nt5c2a (ENSOTSG00005035759)	inaa (ENSOTSG00005036210)	pcgf6 (ENSOTSG00005036212)	ENSOTSG00005036213	ENSOTSG00005036214	calhm2.1 (ENSOTSG00005036217)	hells (ENSOTSG00005036242)	ENSOTSG00005036262	macroh2a2 (ENSOTSG00005036265)	GBF1 (ENSOTSG00005036267) #9	pitx3 (ENSOTSG00005036400)	hspa12a (ENSOTSG00005036401)
Northern pike	MODERN SPECIES	5	si:ch211-93n23.7 (ENSELUG00000015705)	TTC7A (ENSELUG00000015680)	mcfd2 (ENSELUG00000015627)	ENSELUG00000027306	socs5b (ENSELUG00000015618)	usp54a (ENSELUG00000015585)	myoz1a (ENSELUG00000015478)	SYNPO2L (ENSELUG00000015472)	zgc:153169 (ENSELUG00000015448)	ENSELUG00000015413	cep68 (ENSELUG00000015396)	ENSELUG00000024705	tlx1 (ENSELUG00000015373) #29	ENSELUG00000015360	slc2a15a (ENSELUG00000000563)	fgf8a (ENSELUG00000015308) #22	fbxw4 (ENSELUG00000015291) #23	cyp17a1 (ENSELUG00000014836)	ENSELUG00000015261	ENSELUG00000001250	borcs7 (ENSELUG00000015228)	nt5c2a (ENSELUG00000015147)	inaa (ENSELUG00000015029)	pcgf6 (ENSELUG00000015010)	ENSELUG00000014991	calhm2.1 (ENSELUG00000014966)	CALHM3 (ENSELUG00000014947)	hells (ENSELUG00000014909)	ENSELUG00000014562	ENSELUG00000025259	macroh2a2 (ENSELUG00000014527)
Osteoglossiformes	ANCESTRAL SPECIES	115	ENSGT00940000166683	ENSGT00940000154866.B.a	ENSGT00940000166291.g	ENSGT00950000183029.B.i.a	ENSGT01050000244827.E.e.b	ENSGT00940000163653	ENSGT00940000155933.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a.b	ENSGT00390000009155	ENSGT00940000158698.l.a #29	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00940000163289.b.a.b	ENSGT00940000154418.a.a.d
P. kingsleyae	MODERN SPECIES	11	SLC24A3 (ENSPKIG00000003070)	ENSPKIG00000003049	RIN2 (ENSPKIG00000003022)	slc17a5 (ENSPKIG00000002993)	eef1a1b (ENSPKIG00000002973)	ddx43 (ENSPKIG00000002941)	ENSPKIG00000002858	RIMS1 (ENSPKIG00000002723)	asrgl1 (ENSPKIG00000002669)	OGFRL1 (ENSPKIG00000002645)	b3gat2 (ENSPKIG00000002632)	smap1 (ENSPKIG00000002589)	tlx1 (ENSPKIG00000002563) #29	ENSPKIG00000002553	slc2a15a (ENSPKIG00000002478)	fgf8a (ENSPKIG00000002430) #22	fbxw4 (ENSPKIG00000002375) #23	WBP1L (ENSPKIG00000002346)	cnnm2a (ENSPKIG00000002307)	nt5c2a (ENSPKIG00000002181)	INA (ENSPKIG00000002123)	taf5 (ENSPKIG00000002076)	ENSPKIG00000002038	calhm2.1 (ENSPKIG00000002024)	CALHM1 (ENSPKIG00000002001)	CALHM3 (ENSPKIG00000001981)	itprip (ENSPKIG00000001965)	gsto2 (ENSPKIG00000001946)	ENSPKIG00000001925	ENSPKIG00000001908	sfr1 (ENSPKIG00000001887)
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015030330	ENSSFOG00015012058	ENSSFOG00015029442	slc17a5 (ENSSFOG00015012119)	EEF1A1 (ENSSFOG00015012136)	CGAS (ENSSFOG00015012161)	ddx43 (ENSSFOG00015012193)	ENSSFOG00015003071	ENSSFOG00015012291	asrgl1 (ENSSFOG00015012313)	OGFRL1 (ENSSFOG00015024337)	b3gat2 (ENSSFOG00015028654)	SDHAF4 (ENSSFOG00015030247)	TLX1 (ENSSFOG00015026057) #29	slc2a15a (ENSSFOG00015012364)	fgf8a (ENSSFOG00015012408) #22	fbxw4 (ENSSFOG00015012488) #23	nt5c2a (ENSSFOG00015012548)	calhm2.1 (ENSSFOG00015025842)	CALHM1 (ENSSFOG00015012690)	CALHM3 (ENSSFOG00015012698)	itprip (ENSSFOG00015029908)	ENSSFOG00015012731	CFAP43 (ENSSFOG00015012763)	SFR1 (ENSSFOG00015028199)	SLK (ENSSFOG00015012846)	ENSSFOG00015012935	ENSSFOG00015013008
Osteoglossocephalai	ANCESTRAL SPECIES	92	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000155134.y	ENSGT00950000183045.A.a.a	ENSGT00390000018730.B	ENSGT00940000159583	ENSGT00940000155884.a	ENSGT00390000009155	ENSGT00940000158698 #29	ENSGT00940000164611	ENSGT00940000164095.b	ENSGT00940000164095.a	ENSGT00940000159518.a #22	ENSGT00390000005029 #23	ENSGT00390000006243	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00950000183109.c.a.a.a.a	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a
Osteoglossiformes	ANCESTRAL SPECIES	94	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000166291.h	ENSGT00950000183029.B.i.b	ENSGT01050000244827.E.e.a	ENSGT00940000155933.b.a	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00940000155884.a.a	ENSGT00390000006243	ENSGT00940000158698.l.b #29	ENSGT00940000164611	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00940000155588.b	ENSGT00390000015849	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.c	ENSGT00940000158034	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT00940000166025.b
P. kingsleyae	MODERN SPECIES	116										B3GAT2 (ENSPKIG00000001664)	smap1 (ENSPKIG00000001603)	cenpk (ENSPKIG00000001546)	TLX1 (ENSPKIG00000001529) #29	ENSPKIG00000001513	slc2a15b (ENSPKIG00000001451)	fgf8b (ENSPKIG00000001399) #22	dpcd (ENSPKIG00000001362) #24	poll (ENSPKIG00000001318) #25	wbp1lb (ENSPKIG00000001289)	cyp17a1 (ENSPKIG00000001260)	borcs7 (ENSPKIG00000001240)	as3mt (ENSPKIG00000001196)	CNNM2 (ENSPKIG00000001150)	nt5c2b (ENSPKIG00000001096)	inab (ENSPKIG00000001077)	pcgf6 (ENSPKIG00000001037)	atp5md (ENSPKIG00000001009)	pdcd11 (ENSPKIG00000000973)	zgc:175214 (ENSPKIG00000000952)	CALHM1 (ENSPKIG00000000936)	ENSPKIG00000000907
Asian bonytongue	MODERN SPECIES	7	dtd1 (ENSSFOG00015002797)	ENSSFOG00015002819	ENSSFOG00015002919	RIN2 (ENSSFOG00015002933)	ENSSFOG00015002983	eef1a1a (ENSSFOG00015003033)	CGAS (ENSSFOG00015003054)	KCNQ5 (ENSSFOG00015031464)	RIMS1 (ENSSFOG00015003186)	b3gat2 (ENSSFOG00015003295)	smap1 (ENSSFOG00015003315)	cenpk (ENSSFOG00015003362)	tlx1 (ENSSFOG00015030414) #29	lbx1b (ENSSFOG00015003483)	slc2a15b (ENSSFOG00015003512)	fgf8b (ENSSFOG00015032385) #22	dpcd (ENSSFOG00015003562) #24	poll (ENSSFOG00015003586) #25	wbp1lb (ENSSFOG00015003615)	cyp17a1 (ENSSFOG00015003625)	borcs7 (ENSSFOG00015003655)	as3mt (ENSSFOG00015003668)	CNNM2 (ENSSFOG00015003692)	nt5c2b (ENSSFOG00015003738)	inab (ENSSFOG00015003824)	pcgf6 (ENSSFOG00015003847)	taf5 (ENSSFOG00015003852)	atp5md (ENSSFOG00015003866)	pdcd11 (ENSSFOG00015003881)	zgc:175214 (ENSSFOG00015003933)	CALHM1 (ENSSFOG00015003972)
Clupeocephala	ANCESTRAL SPECIES	209								ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234610.b.a.b.b
Otomorpha	ANCESTRAL SPECIES	191		ENSGT00940000155559.a.b	ENSGT00950000183059.b.a.b.r	ENSGT00940000155103.a.b.ld	ENSGT00940000156983.a.a.q	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00950000183029.B.j.h	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377.f	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT00940000166025.b	ENSGT01030000234610.b.a.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234610.b.a.b.b
Clupeiformes	ANCESTRAL SPECIES	203												ENSGT00950000183029.B.i.a	ENSGT00940000155933.b.b	ENSGT00390000006243	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377.f	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00980000198902	ENSGT00940000156184.a
Denticle herring	MODERN SPECIES	13	ENSDCDG00000032944	ENSDCDG00000032951	ENSDCDG00000032953	ENSDCDG00000032958	bcl11ab (ENSDCDG00000032959)	ccdc85al (ENSDCDG00000032961)	sec23b (ENSDCDG00000032982)	dtd1 (ENSDCDG00000033332)	SLC24A3 (ENSDCDG00000033338)	RIN2 (ENSDCDG00000033343)	eef1a1b (ENSDCDG00000033347)	ENSDCDG00000033350	RIMS1 (ENSDCDG00000033416)	cenpk (ENSDCDG00000034131)	slc2a15b (ENSDCDG00000034132)	fgf8b (ENSDCDG00000034133) #22	dpcd (ENSDCDG00000034135) #24	poll (ENSDCDG00000034136) #25	wbp1lb (ENSDCDG00000034138)	as3mt (ENSDCDG00000034141)	CNNM2 (ENSDCDG00000034145)	nt5c2b (ENSDCDG00000034168)	inab (ENSDCDG00000034284)	taf5 (ENSDCDG00000034292)	atp5md (ENSDCDG00000034297)	pdcd11 (ENSDCDG00000034303)	zgc:175214 (ENSDCDG00000034308)	CALHM1 (ENSDCDG00000034310)	ITPRIP (ENSDCDG00000034311)	ENSDCDG00000034313	slkb (ENSDCDG00000034389)
Atlantic herring	MODERN SPECIES	16	bcl11ab (ENSCHAG00000006938)	ccdc85al (ENSCHAG00000007005)	sec23b (ENSCHAG00000007066)	dtd1 (ENSCHAG00000007680)	SLC24A3 (ENSCHAG00000007732)	RIN2 (ENSCHAG00000008374)	EEF1A1 (ENSCHAG00000008431)	ENSCHAG00000008569	RIMS1 (ENSCHAG00000008981)	ENSCHAG00000011039	ENSCHAG00000011087	ENSCHAG00000013425	ENSCHAG00000013436	lbx1b (ENSCHAG00000013543)	slc2a15b (ENSCHAG00000013573)	fgf8b (ENSCHAG00000013783) #22	dpcd (ENSCHAG00000013912) #24	poll (ENSCHAG00000013920) #25	wbp1lb (ENSCHAG00000013931)	as3mt (ENSCHAG00000013938)	CNNM2 (ENSCHAG00000014012)	nt5c2b (ENSCHAG00000002738)	inab (ENSCHAG00000005685)	taf5 (ENSCHAG00000005692)	atp5md (ENSCHAG00000005836)	pdcd11 (ENSCHAG00000005871)	zgc:175214 (ENSCHAG00000006202)	CALHM1 (ENSCHAG00000006210)	ITPRIP (ENSCHAG00000006229)	ENSCHAG00000006235	slkb (ENSCHAG00000006278)
Otophysi	ANCESTRAL SPECIES	201	ENSGT00390000001134.a.b	ENSGT00390000005954	ENSGT00390000013790	ENSGT00530000063106.C	ENSGT00940000157735	ENSGT00940000160127.h	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00950000183029.B.i.a	ENSGT00950000183029.B.j.h	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b
Characiphysae	ANCESTRAL SPECIES	110	ENSGT00940000163648.a.b	ENSGT01010000222287.B.b.a.a.a.b	ENSGT00940000155408.o.b	ENSGT00940000162345.d	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832.m	ENSGT00940000159832.n	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00390000006243	ENSGT00940000155134.z	ENSGT00940000155933.b.b	ENSGT00950000183029.B.i.a.a	ENSGT00940000164127.b	ENSGT00940000155353.a.a.b	ENSGT00940000160127.h	ENSGT00940000157735
Channel catfish	MODERN SPECIES	18	dhrsx (ENSIPUG00000023427)	cd99 (ENSIPUG00000023425)	gyg2 (ENSIPUG00000023416)	mxra5 (ENSIPUG00000023400)	prkx (ENSIPUG00000023395)	ENSIPUG00000022825	nlgn4x (ENSIPUG00000022818)	pudp (ENSIPUG00000022808)	pnpla4 (ENSIPUG00000022785)	sts (ENSIPUG00000022779)	anos1 (ENSIPUG00000022769)	ENSIPUG00000022766	ENSIPUG00000022753	ENSIPUG00000022748	slc2a15b (ENSIPUG00000022730)	fgf8b (ENSIPUG00000022725) #22	dpcd (ENSIPUG00000022713) #24	poll (ENSIPUG00000022704) #25	wbp1lb (ENSIPUG00000022700)	ENSIPUG00000022695	as3mt (ENSIPUG00000022683)	CNNM2 (ENSIPUG00000022677)	nt5c2b (ENSIPUG00000022637)	ina (ENSIPUG00000022635)	ENSIPUG00000022629	ENSIPUG00000022620	lbx1b (ENSIPUG00000022616)	cenpk (ENSIPUG00000022610)	RIMS1 (ENSIPUG00000022460)	ENSIPUG00000022429	eef1a1b (ENSIPUG00000022421)
Characiphysae_b	ANCESTRAL SPECIES	143	ENSGT00950000183034.A.g	ENSGT00940000163648.a.b	ENSGT01010000222287.B.b.a.a.a.b	ENSGT00940000155408.o.b	ENSGT00940000162345.d	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832.m	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b
Characoidei	ANCESTRAL SPECIES	154	ENSGT00950000183034.A.g	ENSGT00940000163648.a.b	ENSGT01010000222287.B.b.a.a.a.b	ENSGT00940000155408.o.b	ENSGT00940000164022	ENSGT00940000154344.b	ENSGT00940000161628	ENSGT00940000159942.a.c.a	ENSGT00940000159832.m	ENSGT00940000156607.a.a	ENSGT00390000014753	ENSGT00940000165158.b	ENSGT00940000161153	ENSGT00440000033720.a.a.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00390000014380.h.b.a.b.b.c
Mexicana tetra	MODERN SPECIES	3	EVI5L (ENSAMXG00000018638)	ENSAMXG00000018641	ENSAMXG00000018646	emp1 (ENSAMXG00000037610)	f8a (ENSAMXG00000038777)	si:ch211-243a20.3 (ENSAMXG00000037723)	grin2bb (ENSAMXG00000018685)	ENSAMXG00000031064	nlgn4xa (ENSAMXG00000018861)	pudp (ENSAMXG00000034340)	ENSAMXG00000036752	ENSAMXG00000018854	STS (ENSAMXG00000018847)	anos1a (ENSAMXG00000036974)	slc2a15b (ENSAMXG00000018822)	fgf8b (ENSAMXG00000034931) #22	dpcd (ENSAMXG00000018795) #24	poll (ENSAMXG00000018787) #25	wbp1lb (ENSAMXG00000031128)	as3mt (ENSAMXG00000031040)	CNNM2 (ENSAMXG00000018762)	nt5c2b (ENSAMXG00000018754)	atf7ip (ENSAMXG00000018747)	septin3 (ENSAMXG00000018729)	ENSAMXG00000034831	serhl (ENSAMXG00000039456)	PRKX (ENSAMXG00000024519)	MXRA5 (ENSAMXG00000024518)	gyg2 (ENSAMXG00000024517)	cd99 (ENSAMXG00000040227)	dhrsx (ENSAMXG00000024516)
Red-bellied piranha	MODERN SPECIES	197												ENSPNAG00000005236	ENSPNAG00000010002	ENSPNAG00000001360	slc2a15b (ENSPNAG00000010080)	fgf8b (ENSPNAG00000010197) #22	dpcd (ENSPNAG00000010230) #24	poll (ENSPNAG00000010238) #25	wbp1lb (ENSPNAG00000010243)	as3mt (ENSPNAG00000010264)	CNNM2 (ENSPNAG00000010318)	nt5c2b (ENSPNAG00000006807)	inab (ENSPNAG00000010378)	ENSPNAG00000010387	ENSPNAG00000001418	ENSPNAG00000010652	ENSPNAG00000010664	ENSPNAG00000001425	rab3da (ENSPNAG00000010705)	pld6 (ENSPNAG00000010713)	cnn1a (ENSPNAG00000010750)
Electric eel	MODERN SPECIES	8	ENSEEEG00000013188	arl6 (ENSEEEG00000013192)	SLC5A7 (ENSEEEG00000013194)	kctd12.2 (ENSEEEG00000013195)	ENSEEEG00000013200	klf12a (ENSEEEG00000013201)	KLF5 (ENSEEEG00000013203)	pibf1 (ENSEEEG00000013207)	ENSEEEG00000013385	gpalpp1 (ENSEEEG00000013387)	gtf2f2a (ENSEEEG00000013391)	tpt1 (ENSEEEG00000013398)	zgc:172122 (ENSEEEG00000013400)	ENSEEEG00000013402	slc2a15b (ENSEEEG00000013405)	fgf8b (ENSEEEG00000013407) #22	dpcd (ENSEEEG00000013408) #24	poll (ENSEEEG00000013410) #25	wbp1lb (ENSEEEG00000013411)	as3mt (ENSEEEG00000013414)	CNNM2 (ENSEEEG00000013418)	nt5c2b (ENSEEEG00000013421)	inab (ENSEEEG00000013453)	ENSEEEG00000013455	ENSEEEG00000013457	ENSEEEG00000013458	ENSEEEG00000013461	ENSEEEG00000013465	ENSEEEG00000013534	ENSEEEG00000013535	lbx1b (ENSEEEG00000013536)
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT01030000234518.C.a.b.a.b.b	ENSGT00390000001134.a.b	ENSGT00390000005954	ENSGT00390000013790	ENSGT00530000063106.C	ENSGT00940000157735	ENSGT00940000160127.h	ENSGT00940000155353.a.a.b	ENSGT00940000164127.b	ENSGT00950000183029.B.i.a	ENSGT00950000183029.B.j.h	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00390000006243	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00440000033720.a.a.b	ENSGT00940000161153	ENSGT00940000162022	ENSGT00940000165158.b	ENSGT00390000014753	ENSGT00940000156607.a.a	ENSGT00940000159832.m	ENSGT00940000159942.a.c.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	378	ENSGT00940000162528.i	ENSGT00940000154913.cb.b	ENSGT00950000182999.b.b.c	ENSGT01030000234518.C.a.b.a.b.b.a	ENSGT00390000001134.a.b.a	ENSGT00390000005954.nb	ENSGT00390000013790.c	ENSGT00530000063106.C.m	ENSGT00940000157735.a	ENSGT00940000160127.h.b	ENSGT00940000155353.a.a.b.b	ENSGT00940000164127.b.a	ENSGT00940000155933.b.b.b	ENSGT00940000155134.z.b	ENSGT00940000164611.b.l.a	ENSGT00940000159518.b.a #22	ENSGT00940000159518.b.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b.c	ENSGT00390000001742.a.h	ENSGT00940000159034.jb.a	ENSGT00940000163289.b.a.a.b	ENSGT00940000154418.a.a.b.e	ENSGT00440000033720.a.a.b.b	ENSGT00940000161153.k	ENSGT01060000249735
Goldfish	MODERN SPECIES		igf2bp2b (ENSCARG00000011322)	gpr183b (ENSCARG00000011381)	gpr183b (ENSCARG00000011384)	dachc (ENSCARG00000011391)	ENSCARG00000011440	mzt1 (ENSCARG00000000109)	bora (ENSCARG00000000114)	dlx2b (ENSCARG00000000132)	itga6b (ENSCARG00000000507)	ENSCARG00000001149	eef1a1b (ENSCARG00000001165)	ENSCARG00000001176	ENSCARG00000001201	RIMS1 (ENSCARG00000001479)	lbx1b (ENSCARG00000002215)	fgf8b (ENSCARG00000002229) #22	wbp1lb (ENSCARG00000002263)	CNNM2 (ENSCARG00000002274)	nt5c2b (ENSCARG00000002368)	inab (ENSCARG00000002533)	anos1a (ENSCARG00000002539)	ENSCARG00000002552	ENSCARG00000002561	pudp (ENSCARG00000002566)	nlgn4xa (ENSCARG00000002582)	phox2ba (ENSCARG00000002604)	exosc9 (ENSCARG00000002615)	ENSCARG00000002664	ENSCARG00000002936	ENSCARG00000004238	TYRP1 (ENSCARG00000004248)
Cyprininae_a	ANCESTRAL SPECIES	178	ENSGT00940000162528.i	ENSGT00940000154913.cb.b	ENSGT00950000182999.b.b.c	ENSGT01030000234518.C.a.b.a.b.b.a	ENSGT00390000001134.a.b.a	ENSGT00390000005954.nb	ENSGT00390000013790.c	ENSGT00530000063106.C.m	ENSGT00940000157735.a	ENSGT00940000160127.h.b	ENSGT00940000155353.a.a.b.b	ENSGT00940000164127.b.a	ENSGT00940000155933.b.b.b	ENSGT00940000155134.z.b	ENSGT00940000164611.b.l.a	ENSGT00940000159518.b.a #22	ENSGT00390000014031.d #24	ENSGT00950000183109.c.a.a.a.b.d	ENSGT00390000001742.a.g.a	ENSGT00940000159034.jb.b	ENSGT00940000163289.b.a.a.a	ENSGT00940000154418.a.a.b.f	ENSGT00440000033720.a.a.b.a	ENSGT00940000161153.l	ENSGT00940000162022	ENSGT00390000014753.d	ENSGT00940000165158.b	ENSGT00390000014753.c	ENSGT00940000156607.a.a.kb.b	ENSGT00940000159832.m.a	ENSGT00940000159942.a.c.a.a
Common carp reference	MODERN SPECIES	22	gpr183b (ENSCCRG00000032361)	dachc (ENSCCRG00000080120)	mzt1 (ENSCCRG00000075782)	bora (ENSCCRG00000036868)	DIS3 (ENSCCRG00000053402)	metap1d (ENSCCRG00000054582)	dlx2b (ENSCCRG00000062845)	itga6b (ENSCCRG00000016674)	ENSCCRG00000079997	eef1a1b (ENSCCRG00000032645)	ENSCCRG00000077062	ENSCCRG00000070376	ENSCCRG00000012958	cenpk (ENSCCRG00000077695)	lbx1b (ENSCCRG00000000446)	fgf8b (ENSCCRG00000073156) #22	dpcd (ENSCCRG00000000422) #24	wbp1lb (ENSCCRG00000002551)	ENSCCRG00000064278	ENSCCRG00000002508	nt5c2b (ENSCCRG00000058145)	inab (ENSCCRG00000002487)	anos1a (ENSCCRG00000033788)	ENSCCRG00000066787	pudp (ENSCCRG00000037755)	ENSCCRG00000055867	nlgn4xa (ENSCCRG00000032014)	ENSCCRG00000076414	ENSCCRG00000055986	PRKX (ENSCCRG00000073593)	MXRA5 (ENSCCRG00000054307)
Golden-line barbel	MODERN SPECIES	1277															lbx1b (ENSSGRG00000050520)	fgf8b (ENSSGRG00000050521) #22	fgf8b (ENSSGRG00000050522) #22	dpcd (ENSSGRG00000050523) #24	ENSSGRG00000050524 #25	wbp1lb (ENSSGRG00000050525)	as3mt (ENSSGRG00000050526)	CNNM2 (ENSSGRG00000050527)	nt5c2b (ENSSGRG00000050538)	anos1a (ENSSGRG00000050682)	STS (ENSSGRG00000050684)	pnpla4 (ENSSGRG00000050686)
Cyprininae	ANCESTRAL SPECIES	378	ENSGT00940000154913.cb.b	ENSGT00950000182999.b.b.c	ENSGT01030000234518.C.a.b.a.b.b.a	ENSGT00390000001134.a.b.a	ENSGT00390000005954.nb	ENSGT00390000013790.c	ENSGT00530000063106.C.m	ENSGT00940000157735.a	ENSGT00940000160127.h.b	ENSGT00940000155353.a.a.b.b	ENSGT00940000164127.b.a	ENSGT00940000155933.b.b.b	ENSGT00940000155134.z.b	ENSGT00940000164611.b.l.a	ENSGT00940000159518.b.a #22	ENSGT00940000159518.b.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b.c	ENSGT00390000001742.a.h	ENSGT00940000159034.jb.a	ENSGT00940000163289.b.a.a.b	ENSGT00940000154418.a.a.b.e	ENSGT00440000033720.a.a.b.b	ENSGT00940000161153.k	ENSGT01060000249735
Goldfish	MODERN SPECIES	18	dachc (ENSCARG00000010228)	mzt1 (ENSCARG00000010269)	bora (ENSCARG00000010286)	DIS3 (ENSCARG00000010336)	metap1d (ENSCARG00000010489)	dlx2b (ENSCARG00000010852)	itga6b (ENSCARG00000010972)	ENSCARG00000013154	eef1a1b (ENSCARG00000013192)	ENSCARG00000013196	ENSCARG00000013212	RIMS1 (ENSCARG00000013343)	cenpk (ENSCARG00000014485)	lbx1b (ENSCARG00000014488)	slc2a15b (ENSCARG00000014504)	fgf8b (ENSCARG00000014627) #22	dpcd (ENSCARG00000014642) #24	poll (ENSCARG00000014649) #25	wbp1lb (ENSCARG00000014665)	ENSCARG00000014673	as3mt (ENSCARG00000014687)	CNNM2 (ENSCARG00000014756)	nt5c2b (ENSCARG00000014795)	ENSCARG00000015019	inab (ENSCARG00000015024)	anos1a (ENSCARG00000015038)	STS (ENSCARG00000015218)	ENSCARG00000015282	ENSCARG00000015287	ENSCARG00000015295	ENSCARG00000015315
Cyprininae_a	ANCESTRAL SPECIES	256	ENSGT01030000234518.C.a.b.a.b.b.b	ENSGT00390000001134.a.b.b	ENSGT00390000005954.ob	ENSGT00390000013790.d	ENSGT00530000063106.C.n	ENSGT00940000157735.b	ENSGT00940000160127.h.a	ENSGT00940000155353.a.a.b.a	ENSGT00940000164127.b.b	ENSGT00950000183029.B.i.a	ENSGT00940000155933.b.b.a	ENSGT00940000155134.z.a	ENSGT00390000006243	ENSGT00940000164611.b.l.b	ENSGT00940000164095.b	ENSGT00940000159518.b.b #22	ENSGT00390000014031.c #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b.c	ENSGT00390000001742.a.h	ENSGT00940000159034.jb.a	ENSGT00940000163289.b.a.a.b	ENSGT00940000154418.a.a.b.e	ENSGT00440000033720.a.a.b.b	ENSGT00940000161153.k	ENSGT01060000249735	ENSGT00940000156607.a.a.kb.a
Common carp reference	MODERN SPECIES	27	gpr183b (ENSCCRG00000063264)	dachc (ENSCCRG00000032347)	bora (ENSCCRG00000030093)	mzt1 (ENSCCRG00000054748)	ENSCCRG00000082299	metap1d (ENSCCRG00000067438)	dlx2b (ENSCCRG00000015420)	itga6b (ENSCCRG00000023620)	ENSCCRG00000025690	eef1a1b (ENSCCRG00000068272)	ENSCCRG00000060865	ENSCCRG00000074168	cenpk (ENSCCRG00000079032)	lbx1b (ENSCCRG00000012953)	slc2a15b (ENSCCRG00000032469)	fgf8b (ENSCCRG00000036243) #22	poll (ENSCCRG00000075739) #25	dpcd (ENSCCRG00000036244) #24	wbp1lb (ENSCCRG00000082236)	as3mt (ENSCCRG00000068214)	ENSCCRG00000047640	ENSCCRG00000068233	nt5c2b (ENSCCRG00000030371)	inab (ENSCCRG00000012948)	anos1a (ENSCCRG00000012925)	ENSCCRG00000059369	ENSCCRG00000016112	ENSCCRG00000069305	nlgn4xa (ENSCCRG00000057363)	ENSCCRG00000008504	ENSCCRG00000053953
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	333			dachc (ENSSGRG00000031874)	mzt1 (ENSSGRG00000031881)	bora (ENSSGRG00000031883)	metap1d (ENSSGRG00000031888)	ENSSGRG00000031974	dlx2b (ENSSGRG00000031975)	itga6b (ENSSGRG00000031995)	eef1a1b (ENSSGRG00000032231)	ENSSGRG00000033034	RIMS1 (ENSSGRG00000033037)	cenpk (ENSSGRG00000033140)	lbx1b (ENSSGRG00000033141)	slc2a15b (ENSSGRG00000033142)	fgf8b (ENSSGRG00000033143) #22	dpcd (ENSSGRG00000033144) #24	poll (ENSSGRG00000033145) #25	poll (ENSSGRG00000033146) #25	ENSSGRG00000033147	wbp1lb (ENSSGRG00000033149)	as3mt (ENSSGRG00000033150)	CNNM2 (ENSSGRG00000033152)	nt5c2b (ENSSGRG00000033166)	inab (ENSSGRG00000034984)	anos1a (ENSSGRG00000034985)	STS (ENSSGRG00000034986)	ENSSGRG00000034989	pnpla4 (ENSSGRG00000034991)	pudp (ENSSGRG00000034995)	nlgn4xa (ENSSGRG00000034997)
Golden-line barbel	MODERN SPECIES	1277														lbx1b (ENSSGRG00000050520)	fgf8b (ENSSGRG00000050521) #22	fgf8b (ENSSGRG00000050522) #22	dpcd (ENSSGRG00000050523) #24	ENSSGRG00000050524 #25	wbp1lb (ENSSGRG00000050525)	as3mt (ENSSGRG00000050526)	CNNM2 (ENSSGRG00000050527)	nt5c2b (ENSSGRG00000050538)	anos1a (ENSSGRG00000050682)	STS (ENSSGRG00000050684)	pnpla4 (ENSSGRG00000050686)
Zebrafish	MODERN SPECIES		gpr183b (ENSDARG00000074302)	dachc (ENSDARG00000003142)	mzt1 (ENSDARG00000096668)	bora (ENSDARG00000042688)	DIS3 (ENSDARG00000060559)	metap1d (ENSDARG00000019715)	dlx2b (ENSDARG00000017174)	itga6b (ENSDARG00000069946)	ENSDARG00000074575	eef1a1b (ENSDARG00000069951)	ENSDARG00000069953	ENSDARG00000078902	cenpk (ENSDARG00000039616)	lbx1b (ENSDARG00000018611)	slc2a15b (ENSDARG00000053269)	fgf8b (ENSDARG00000039615) #22	dpcd (ENSDARG00000060501) #24	poll (ENSDARG00000039613) #25	wbp1lb (ENSDARG00000029751)	as3mt (ENSDARG00000027572)	CNNM2 (ENSDARG00000078733)	nt5c2b (ENSDARG00000058231)	inab (ENSDARG00000053248)	anos1a (ENSDARG00000012896)	ENSDARG00000100996	STS (ENSDARG00000053241)	pnpla4 (ENSDARG00000069834)	pudp (ENSDARG00000027826)	nlgn4xa (ENSDARG00000079455)	ENSDARG00000078810	PRKX (ENSDARG00000060716)
Euteleosteomorpha	ANCESTRAL SPECIES	95	ENSGT00940000156696.B	ENSGT00940000157732.f.a	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00860000134050	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT00940000155933.b.b	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Acanthomorphata	ANCESTRAL SPECIES	44													ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000163289.b.b	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Percomorphaceae	ANCESTRAL SPECIES	20	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Tiger tail seahorse	MODERN SPECIES	382	ENSHCOG00000015325 #14	ldb1b (ENSHCOG00000015353) #15	armh3 (ENSHCOG00000015410) #18	KCNIP2 (ENSHCOG00000015439) #19	jupa (ENSHCOG00000015466)	ENSHCOG00000015579	ENSHCOG00000000435	krt99 (ENSHCOG00000015602)	krt15 (ENSHCOG00000015609)	krt98 (ENSHCOG00000015617)	krt94 (ENSHCOG00000015619)	SMAP1 (ENSHCOG00000015623)	cenpk (ENSHCOG00000015628)	lbx1b (ENSHCOG00000015655)	slc2a15b (ENSHCOG00000015684)	fgf8b (ENSHCOG00000015697) #22	dpcd (ENSHCOG00000015714) #24	poll (ENSHCOG00000015721) #25	ENSHCOG00000015728	wbp1lb (ENSHCOG00000015735)	as3mt (ENSHCOG00000015739)	as3mt (ENSHCOG00000015743)	CNNM2 (ENSHCOG00000015891)	nt5c2b (ENSHCOG00000015940)	inab (ENSHCOG00000015969)	atp5md (ENSHCOG00000015974)	taf5 (ENSHCOG00000015986)	pdcd11 (ENSHCOG00000016006)	zgc:175214 (ENSHCOG00000016032)	CALHM1 (ENSHCOG00000016043)	zp3c (ENSHCOG00000016062)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Carangaria	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Pleuronectoidei	ANCESTRAL SPECIES	22	ENSGT00390000007726.a.b ##20	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b	ENSGT00940000167090
Turbot	MODERN SPECIES	20	ldb1b (ENSSMAG00000005937) #15	ENSSMAG00000006048 #18	KCNIP2 (ENSSMAG00000006111) #19	jupa (ENSSMAG00000006134)	ENSSMAG00000006168	ENSSMAG00000006186	krt99 (ENSSMAG00000006200)	krt15 (ENSSMAG00000006227)	krt98 (ENSSMAG00000006243)	krt94 (ENSSMAG00000006254)	ENSSMAG00000006263	cenpk (ENSSMAG00000006290)	lbx1b (ENSSMAG00000036098)	poll (ENSSMAG00000006388) #25	slc2a15b (ENSSMAG00000006312)	fgf8b (ENSSMAG00000006337) #22	dpcd (ENSSMAG00000006362) #24	wbp1lb (ENSSMAG00000021668)	as3mt (ENSSMAG00000006450)	ENSSMAG00000006481	nt5c2b (ENSSMAG00000006511)	inab (ENSSMAG00000006549)	taf5 (ENSSMAG00000006561)	atp5md (ENSSMAG00000006592)	pdcd11 (ENSSMAG00000006612)	zgc:175214 (ENSSMAG00000033852)	CALHM1 (ENSSMAG00000006637)	ENSSMAG00000006683	zp3c (ENSSMAG00000006645)	ENSSMAG00000006688	ENSSMAG00000006701
Carangaria_A	ANCESTRAL SPECIES	24	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Barramundi perch	MODERN SPECIES	123	ENSLCAG00010005143 ##20	ldb1b (ENSLCAG00010004959) #15	armh3 (ENSLCAG00010004845) #18	KCNIP2 (ENSLCAG00010004262) #19	jupa (ENSLCAG00010004132)	ENSLCAG00010004050	ENSLCAG00010004025	krt99 (ENSLCAG00010004003)	krt15 (ENSLCAG00010003939)	krt98 (ENSLCAG00010003920)	krt94 (ENSLCAG00010003907)	SMAP1 (ENSLCAG00010003899)	cenpk (ENSLCAG00010003895)	lbx1b (ENSLCAG00010003893)	slc2a15b (ENSLCAG00010003888)	fgf8b (ENSLCAG00010003879) #22	dpcd (ENSLCAG00010003873) #24	poll (ENSLCAG00010003869) #25	wbp1lb (ENSLCAG00010003854)	as3mt (ENSLCAG00010003837)	CNNM2 (ENSLCAG00010003833)	nt5c2b (ENSLCAG00010003780)	inab (ENSLCAG00010003759)	taf5 (ENSLCAG00010003754)	atp5md (ENSLCAG00010003750)	pdcd11 (ENSLCAG00010003747)	zgc:175214 (ENSLCAG00010003737)	CALHM1 (ENSLCAG00010003733)	ENSLCAG00010003731	zp3c (ENSLCAG00010003728)	rab40c (ENSLCAG00010003725)
Seriola	ANCESTRAL SPECIES	11	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Yellowtail amberjack	MODERN SPECIES	3041	si:dkey-93h22.8 (ENSSLDG00000012010) #14	ldb1b (ENSSLDG00000011963) #15	armh3 (ENSSLDG00000011864) #18	KCNIP2 (ENSSLDG00000011824) #19	jupa (ENSSLDG00000011768)	ENSSLDG00000011569	ENSSLDG00000011518	krt99 (ENSSLDG00000011125)	krt15 (ENSSLDG00000011011)	krt98 (ENSSLDG00000010975)	krt94 (ENSSLDG00000010940)	SMAP1 (ENSSLDG00000010906)	cenpk (ENSSLDG00000010881)	lbx1b (ENSSLDG00000010867)	slc2a15b (ENSSLDG00000010809)	fgf8b (ENSSLDG00000010661) #22	dpcd (ENSSLDG00000010604) #24	poll (ENSSLDG00000010575) #25	wbp1lb (ENSSLDG00000010555)	as3mt (ENSSLDG00000010514)	CNNM2 (ENSSLDG00000010430)	nt5c2b (ENSSLDG00000010353)	inab (ENSSLDG00000010328)	taf5 (ENSSLDG00000010283)	ENSSLDG00000010269	pdcd11 (ENSSLDG00000010228)	zgc:175214 (ENSSLDG00000010213)	CALHM1 (ENSSLDG00000010196)	ENSSLDG00000010181	zp3c (ENSSLDG00000010156)	rab40c (ENSSLDG00000010124)
Greater amberjack	MODERN SPECIES	84	si:dkey-93h22.8 (ENSSDUG00000001268) #14	ldb1b (ENSSDUG00000001247) #15	armh3 (ENSSDUG00000001167) #18	KCNIP2 (ENSSDUG00000001121) #19	jupa (ENSSDUG00000001059)	ENSSDUG00000000985	ENSSDUG00000000957	krt99 (ENSSDUG00000000457)	krt15 (ENSSDUG00000000355)	krt98 (ENSSDUG00000000282)	krt94 (ENSSDUG00000000267)	SMAP1 (ENSSDUG00000000217)	cenpk (ENSSDUG00000000210)	lbx1b (ENSSDUG00000000191)	slc2a15b (ENSSDUG00000000101)	fgf8b (ENSSDUG00000021510) #22	dpcd (ENSSDUG00000021500) #24	poll (ENSSDUG00000021485) #25	wbp1lb (ENSSDUG00000021479)	as3mt (ENSSDUG00000021471)	CNNM2 (ENSSDUG00000021457)	nt5c2b (ENSSDUG00000021446)	inab (ENSSDUG00000021437)	taf5 (ENSSDUG00000021414)	atp5md (ENSSDUG00000021405)	pdcd11 (ENSSDUG00000021302)	zgc:175214 (ENSSDUG00000021288)	CALHM1 (ENSSDUG00000021282)	ENSSDUG00000021274	zp3c (ENSSDUG00000021264)	rab40c (ENSSDUG00000021256)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Zig-zag eel	MODERN SPECIES		ENSMAMG00000011193 ##20	si:dkey-93h22.8 (ENSMAMG00000011169) #14	ldb1b (ENSMAMG00000011142) #15	ARMH3 (ENSMAMG00000011040) #18	KCNIP2 (ENSMAMG00000011011) #19	jupa (ENSMAMG00000010941)	ENSMAMG00000010892	ENSMAMG00000010885	krt99 (ENSMAMG00000010847)	krt15 (ENSMAMG00000010835)	krt98 (ENSMAMG00000010267)	krt94 (ENSMAMG00000010209)	ENSMAMG00000010206	cenpk (ENSMAMG00000010189)	lbx1b (ENSMAMG00000010182)	fgf8b (ENSMAMG00000024638) #22	dpcd (ENSMAMG00000009826) #24	poll (ENSMAMG00000009780) #25	wbp1lb (ENSMAMG00000009771)	as3mt (ENSMAMG00000009749)	ENSMAMG00000009701	nt5c2b (ENSMAMG00000009657)	inab (ENSMAMG00000009645)	taf5 (ENSMAMG00000009605)	atp5md (ENSMAMG00000009637)	pdcd11 (ENSMAMG00000009572)	zgc:175214 (ENSMAMG00000009533)	CALHM1 (ENSMAMG00000009513)	ENSMAMG00000009508	zp3c (ENSMAMG00000009483)	ENSMAMG00000009467
Anabantoidei	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Climbing perch	MODERN SPECIES		ENSATEG00000020218 #14	ldb1b (ENSATEG00000020230) #15	ARMH3 (ENSATEG00000020255) #18	KCNIP2 (ENSATEG00000020347) #19	jupa (ENSATEG00000020387)	ENSATEG00000020436	ENSATEG00000020511	krt99 (ENSATEG00000020521)	krt15 (ENSATEG00000020542)	krt98 (ENSATEG00000020567)	krt94 (ENSATEG00000020591)	ENSATEG00000020598	cenpk (ENSATEG00000020632)	lbx1b (ENSATEG00000020642)	slc2a15b (ENSATEG00000020655)	fgf8b (ENSATEG00000028269) #22	dpcd (ENSATEG00000020802) #24	poll (ENSATEG00000020832) #25	wbp1lb (ENSATEG00000029225)	as3mt (ENSATEG00000020869)	ENSATEG00000020907	nt5c2b (ENSATEG00000020922)	inab (ENSATEG00000020981)	taf5 (ENSATEG00000021013)	atp5md (ENSATEG00000021023)	pdcd11 (ENSATEG00000021043)	zgc:175214 (ENSATEG00000026648)	CALHM1 (ENSATEG00000021082)	ENSATEG00000021087	zp3c (ENSATEG00000021096)	ENSATEG00000021114
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000001281 ##20	si:dkey-93h22.8 (ENSBSLG00000001254) #14	ldb1b (ENSBSLG00000001219) #15	armh3 (ENSBSLG00000000791) #18	KCNIP2 (ENSBSLG00000000751) #19	jupa (ENSBSLG00000000630)	ENSBSLG00000000502	ENSBSLG00000000461	krt99 (ENSBSLG00000000440)	krt98 (ENSBSLG00000000226)	krt15 (ENSBSLG00000000117)	SMAP1 (ENSBSLG00000006854)	cenpk (ENSBSLG00000006834)	lbx1b (ENSBSLG00000006829)	slc2a15b (ENSBSLG00000006540)	fgf8b (ENSBSLG00000006445) #22	dpcd (ENSBSLG00000006378) #24	poll (ENSBSLG00000006326) #25	wbp1lb (ENSBSLG00000006278)	as3mt (ENSBSLG00000006175)	CNNM2 (ENSBSLG00000006172)	nt5c2b (ENSBSLG00000005814)	inab (ENSBSLG00000005764)	taf5 (ENSBSLG00000004941)	ENSBSLG00000004614	pdcd11 (ENSBSLG00000004611)	zgc:175214 (ENSBSLG00000004607)	CALHM1 (ENSBSLG00000004601)	ITPRIP (ENSBSLG00000004596)	zp3c (ENSBSLG00000004592)	rab40c (ENSBSLG00000004590)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00390000007726.a.b ##20	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005003245 ##20	si:dkey-93h22.8 (ENSLCRG00005003250) #14	ldb1b (ENSLCRG00005003254) #15	armh3 (ENSLCRG00005003267) #18	KCNIP2 (ENSLCRG00005003351) #19	jupa (ENSLCRG00005003367)	ENSLCRG00005003733	ENSLCRG00005003767	krt99 (ENSLCRG00005003768)	krt98 (ENSLCRG00005003770)	krt15 (ENSLCRG00005003773)	krt94 (ENSLCRG00005003776)	SMAP1 (ENSLCRG00005003780)	lbx1b (ENSLCRG00005003783)	slc2a15b (ENSLCRG00005003787)	fgf8b (ENSLCRG00005003796) #22	dpcd (ENSLCRG00005003799) #24	poll (ENSLCRG00005003801) #25	wbp1lb (ENSLCRG00005003802)	as3mt (ENSLCRG00005003804)	CNNM2 (ENSLCRG00005003820)	nt5c2b (ENSLCRG00005003843)	inab (ENSLCRG00005005315)	taf5 (ENSLCRG00005005317)	atp5md (ENSLCRG00005005378)	pdcd11 (ENSLCRG00005005379)	zgc:175214 (ENSLCRG00005005387)	CALHM1 (ENSLCRG00005005389)	ITPRIP (ENSLCRG00005005392)	zp3c (ENSLCRG00005005400)	rab40c (ENSLCRG00005005404)
European seabass	MODERN SPECIES	20	ENSDLAG00005025007 ##20	si:dkey-93h22.8 (ENSDLAG00005028092) #14	ldb1b (ENSDLAG00005024961) #15	ARMH3 (ENSDLAG00005024926) #18	KCNIP2 (ENSDLAG00005031164) #19	jupa (ENSDLAG00005024780)	ENSDLAG00005024684	ENSDLAG00005024681	krt99 (ENSDLAG00005024665)	krt15 (ENSDLAG00005024650)	krt98 (ENSDLAG00005029695)	krt94 (ENSDLAG00005024613)	ENSDLAG00005024602	lbx1b (ENSDLAG00005026330)	slc2a15b (ENSDLAG00005024529)	fgf8b (ENSDLAG00005034123) #22	dpcd (ENSDLAG00005024508) #24	poll (ENSDLAG00005024503) #25	wbp1lb (ENSDLAG00005024495)	ENSDLAG00005024481	nt5c2b (ENSDLAG00005024147)	inab (ENSDLAG00005031136)	ENSDLAG00005024092	zgc:175214 (ENSDLAG00005024067)	pdcd11 (ENSDLAG00005024070)	ENSDLAG00005024065	ENSDLAG00005033739	zp3c (ENSDLAG00005024061)	ENSDLAG00005032709	ENSDLAG00005033770	ENSDLAG00005023583
Gilthead seabream	MODERN SPECIES		ENSSAUG00010001140	si:dkey-93h22.8 (ENSSAUG00010001142) #14	ldb1b (ENSSAUG00010001148) #15	armh3 (ENSSAUG00010001174) #18	KCNIP2 (ENSSAUG00010001214) #19	jupa (ENSSAUG00010001232)	ENSSAUG00010002410	ENSSAUG00010002849	krt99 (ENSSAUG00010002863)	krt15 (ENSSAUG00010002881)	krt98 (ENSSAUG00010002917)	SMAP1 (ENSSAUG00010003003)	cenpk (ENSSAUG00010003014)	lbx1b (ENSSAUG00010003024)	slc2a15b (ENSSAUG00010003054)	fgf8b (ENSSAUG00010003246) #22	dpcd (ENSSAUG00010003248) #24	poll (ENSSAUG00010003250) #25	wbp1lb (ENSSAUG00010003253)	as3mt (ENSSAUG00010003260)	CNNM2 (ENSSAUG00010003267)	nt5c2b (ENSSAUG00010003314)	inab (ENSSAUG00010005042)	taf5 (ENSSAUG00010005046)	atp5md (ENSSAUG00010005272)	pdcd11 (ENSSAUG00010005292)	zgc:175214 (ENSSAUG00010005365)	ITPRIP (ENSSAUG00010005369)	CALHM1 (ENSSAUG00010005371)	ENSSAUG00010005374	rab40c (ENSSAUG00010005377)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b	ENSGT00940000167090
Stickleback	MODERN SPECIES	4	ENSGACG00000018338	ldb1b (ENSGACG00000018336) #15	armh3 (ENSGACG00000018333) #18	KCNIP2 (ENSGACG00000018330) #19	jupa (ENSGACG00000018328)	ENSGACG00000018327	ENSGACG00000018326	krt99 (ENSGACG00000018321)	krt15 (ENSGACG00000018310)	krt98 (ENSGACG00000018303)	krt94 (ENSGACG00000018299)	SMAP1 (ENSGACG00000018297)	cenpk (ENSGACG00000018295)	lbx1b (ENSGACG00000018293)	slc2a15b (ENSGACG00000018278)	fgf8b (ENSGACG00000018276) #22	dpcd (ENSGACG00000018274) #24	poll (ENSGACG00000018272) #25	wbp1lb (ENSGACG00000018270)	as3mt (ENSGACG00000018262)	CNNM2 (ENSGACG00000018261)	ENSGACG00000018260	nt5c2b (ENSGACG00000018247)	inab (ENSGACG00000018244)	taf5 (ENSGACG00000018238)	pdcd11 (ENSGACG00000018233)	ENSGACG00000018230	SMURF2 (ENSGACG00000018228)	ENSGACG00000018226	ENSGACG00000018225	TEX2 (ENSGACG00000018223)
Lumpfish	MODERN SPECIES		armh3 (ENSCLMG00005014981) #18	KCNIP2 (ENSCLMG00005015013) #19	jupa (ENSCLMG00005015158)	ENSCLMG00005015793	ENSCLMG00005016353	krt99 (ENSCLMG00005016355)	krt15 (ENSCLMG00005016356)	krt15 (ENSCLMG00005016364)	krt15 (ENSCLMG00005016371)	krt98 (ENSCLMG00005016373)	krt94 (ENSCLMG00005016389)	SMAP1 (ENSCLMG00005000004)	cenpk (ENSCLMG00005000017)	lbx1b (ENSCLMG00005000027)	slc2a15b (ENSCLMG00005000030)	fgf8b (ENSCLMG00005000044) #22	dpcd (ENSCLMG00005000050) #24	poll (ENSCLMG00005000053) #25	wbp1lb (ENSCLMG00005000058)	as3mt (ENSCLMG00005000078)	CNNM2 (ENSCLMG00005000165)	nt5c2b (ENSCLMG00005000335)	inab (ENSCLMG00005000727)	taf5 (ENSCLMG00005000736)	atp5md (ENSCLMG00005000778)	pdcd11 (ENSCLMG00005000779)	zgc:175214 (ENSCLMG00005000782)	CALHM1 (ENSCLMG00005000783)	ENSCLMG00005000784	rab40c (ENSCLMG00005000785)	wfikkn1 (ENSCLMG00005000786)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Channel bull blenny	MODERN SPECIES		si:dkey-93h22.8 (ENSCGOG00000002491) #14	ldb1b (ENSCGOG00000002517) #15	armh3 (ENSCGOG00000003464) #18	KCNIP2 (ENSCGOG00000003983) #19	jupa (ENSCGOG00000004237)	ENSCGOG00000007811	ENSCGOG00000007818	krt99 (ENSCGOG00000007820)	krt15 (ENSCGOG00000007877)	krt98 (ENSCGOG00000007897)	krt94 (ENSCGOG00000007899)	SMAP1 (ENSCGOG00000007902)	cenpk (ENSCGOG00000007910)	lbx1b (ENSCGOG00000007915)	slc2a15b (ENSCGOG00000007928)	fgf8b (ENSCGOG00000008193) #22	dpcd (ENSCGOG00000008201) #24	poll (ENSCGOG00000008203) #25	wbp1lb (ENSCGOG00000008213)	as3mt (ENSCGOG00000008221)	CNNM2 (ENSCGOG00000008265)	nt5c2b (ENSCGOG00000008287)	inab (ENSCGOG00000008659)	taf5 (ENSCGOG00000008661)	atp5md (ENSCGOG00000008688)	pdcd11 (ENSCGOG00000000129)	zgc:175214 (ENSCGOG00000000156)	CALHM1 (ENSCGOG00000000163)	ITPRIP (ENSCGOG00000000168)	zp3c (ENSCGOG00000000180)	rab40c (ENSCGOG00000000192)
Pike perch	MODERN SPECIES	8	ENSSLUG00000010956	KCNIP2 (ENSSLUG00000010934) #19	jupa (ENSSLUG00000010039)	ENSSLUG00000009988	ENSSLUG00000009982	krt99 (ENSSLUG00000009950)	krt15 (ENSSLUG00000009939)	krt98 (ENSSLUG00000009937)	ENSSLUG00000009915	krt98 (ENSSLUG00000009869)	krt94 (ENSSLUG00000009847)	SMAP1 (ENSSLUG00000009833)	cenpk (ENSSLUG00000009823)	lbx1b (ENSSLUG00000009812)	slc2a15b (ENSSLUG00000009795)	fgf8b (ENSSLUG00000009782) #22	dpcd (ENSSLUG00000009777) #24	poll (ENSSLUG00000009770) #25	wbp1lb (ENSSLUG00000009766)	as3mt (ENSSLUG00000009747)	CNNM2 (ENSSLUG00000009525)	nt5c2b (ENSSLUG00000008262)	inab (ENSSLUG00000008179)	taf5 (ENSSLUG00000007908)	atp5md (ENSSLUG00000007888)	pdcd11 (ENSSLUG00000007813)	zgc:175214 (ENSSLUG00000007794)	CALHM1 (ENSSLUG00000007787)	ENSSLUG00000007773	zp3c (ENSSLUG00000007761)	rab40c (ENSSLUG00000007753)
Ballan wrasse	MODERN SPECIES	186		KCNIP2 (ENSLBEG00000008729) #19	jupa (ENSLBEG00000008780)	ENSLBEG00000008907	ENSLBEG00000009061	krt99 (ENSLBEG00000009101)	krt15 (ENSLBEG00000009240)	krt98 (ENSLBEG00000009274)	krt15 (ENSLBEG00000009308)	krt98 (ENSLBEG00000009343)	krt94 (ENSLBEG00000009359)	SMAP1 (ENSLBEG00000009408)	cenpk (ENSLBEG00000009428)	lbx1b (ENSLBEG00000009451)	slc2a15b (ENSLBEG00000009474)	fgf8b (ENSLBEG00000009512) #22	dpcd (ENSLBEG00000009557) #24	poll (ENSLBEG00000009587) #25	wbp1lb (ENSLBEG00000009633)	as3mt (ENSLBEG00000009674)	CNNM2 (ENSLBEG00000009710)	nt5c2b (ENSLBEG00000009773)	inab (ENSLBEG00000009843)	taf5 (ENSLBEG00000009877)	atp5md (ENSLBEG00000009925)	ENSLBEG00000009990	zgc:175214 (ENSLBEG00000010140)	CALHM1 (ENSLBEG00000010161)	ENSLBEG00000010182	rab40c (ENSLBEG00000010218)	wfikkn1 (ENSLBEG00000010249)
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00940000157347	ENSGT00390000011081.q.a	ENSGT01030000234532.B.e.a.a.b.d.a	ENSGT00390000002721	ENSGT01050000244891.B	ENSGT00940000158380.b	ENSGT00950000183079.A.b.c.a.a	ENSGT00950000183012.B.b	ENSGT00390000009084	ENSGT01050000244823.d.b.a.a	ENSGT00940000155258.e	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01060000250262	ENSGT00940000158979.e.b
Tetraodon	MODERN SPECIES	26	BACH2 (ENSTNIG00000003864)	ENSTNIG00000003863	ENSTNIG00000000081	ENSTNIG00000003859	myh7l (ENSTNIG00000003860)	PFKFB2 (ENSTNIG00000003857)	ENSTNIG00000003856	SKI (ENSTNIG00000001491)	det1 (ENSTNIG00000003849)	ENSTNIG00000003841	tfap2c (ENSTNIG00000003840)	ENSTNIG00000003838	AMIGO3 (ENSTNIG00000003837)	ENSTNIG00000001250	ENSTNIG00000003831	fgf8b (ENSTNIG00000003830) #22	ENSTNIG00000000859	aqp3a (ENSTNIG00000003827)	nol6 (ENSTNIG00000003826)	eif3s10 (ENSTNIG00000003822)	eif4e2rs1 (ENSTNIG00000003820)	zgc:158659 (ENSTNIG00000003819)	dnaaf1 (ENSTNIG00000003818)	ENSTNIG00000003817	ENSTNIG00000003815	EFNA5 (ENSTNIG00000003814)	ENSTNIG00000003813	ENSTNIG00000003807	ENSTNIG00000001875	ENSTNIG00000017838	ENSTNIG00000001514
Fugu	MODERN SPECIES	8	slc24a2 (ENSTRUG00000015445)	xpa (ENSTRUG00000027763)	kpna7 (ENSTRUG00000015372)	fgf20a (ENSTRUG00000015359)	MICU3 (ENSTRUG00000015336)	vps37a (ENSTRUG00000015286)	nsmce1 (ENSTRUG00000015276)	ENSTRUG00000015253	krt94 (ENSTRUG00000015114)	SMAP1 (ENSTRUG00000015069)	nsmce4a (ENSTRUG00000015029)	cenpk (ENSTRUG00000015014)	lbx1b (ENSTRUG00000015003)	slc2a15b (ENSTRUG00000014883)	ENSTRUG00000031732	fgf8b (ENSTRUG00000022621) #22	dpcd (ENSTRUG00000014821) #24	poll (ENSTRUG00000014779) #25	wbp1lb (ENSTRUG00000014761)	as3mt (ENSTRUG00000030244)	CNNM2 (ENSTRUG00000014689)	nt5c2b (ENSTRUG00000014556)	inab (ENSTRUG00000014528)	taf5 (ENSTRUG00000014486)	atp5md (ENSTRUG00000019734)	pdcd11 (ENSTRUG00000014291)	zgc:175214 (ENSTRUG00000026105)	CALHM1 (ENSTRUG00000014234)	ITPRIP (ENSTRUG00000027759)	ENSTRUG00000021079	rab40c (ENSTRUG00000002192)
Ovalentaria	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Pomacentridae	ANCESTRAL SPECIES	20	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Pomacentridae_A	ANCESTRAL SPECIES	13	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Amphiprion	ANCESTRAL SPECIES		ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000166377	ENSGT00940000153342.a	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Orange clownfish	MODERN SPECIES	17	patl1 (ENSAPEG00000021391)	ENSAPEG00000021371	armh3 (ENSAPEG00000021305) #18	KCNIP2 (ENSAPEG00000021263) #19	jupa (ENSAPEG00000021206)	ENSAPEG00000021076	ENSAPEG00000021002	krt99 (ENSAPEG00000020988)	krt15 (ENSAPEG00000020944)	krt98 (ENSAPEG00000020925)	krt94 (ENSAPEG00000020916)	SMAP1 (ENSAPEG00000020861)	cenpk (ENSAPEG00000020835)	lbx1b (ENSAPEG00000020806)	slc2a15b (ENSAPEG00000020772)	fgf8b (ENSAPEG00000020700) #22	dpcd (ENSAPEG00000020676) #24	poll (ENSAPEG00000020633) #25	wbp1lb (ENSAPEG00000020616)	as3mt (ENSAPEG00000020598)	CNNM2 (ENSAPEG00000020499)	nt5c2b (ENSAPEG00000020408)	inab (ENSAPEG00000020332)	atp5md (ENSAPEG00000020309)	taf5 (ENSAPEG00000020262)	pdcd11 (ENSAPEG00000020240)	zgc:175214 (ENSAPEG00000020209)	CALHM1 (ENSAPEG00000020194)	ENSAPEG00000020183	ENSAPEG00000020158	rab40c (ENSAPEG00000020137)
Clown anemonefish	MODERN SPECIES	657					jupa (ENSAOCG00000021215)	ENSAOCG00000021350	ENSAOCG00000021233	krt99 (ENSAOCG00000021386)	krt15 (ENSAOCG00000021398)	krt98 (ENSAOCG00000021421)	krt94 (ENSAOCG00000021442)	SMAP1 (ENSAOCG00000021487)	cenpk (ENSAOCG00000021512)	lbx1b (ENSAOCG00000021517)	slc2a15b (ENSAOCG00000021551)	fgf8b (ENSAOCG00000021667) #22	dpcd (ENSAOCG00000021699) #24	poll (ENSAOCG00000021729) #25	wbp1lb (ENSAOCG00000021744)	as3mt (ENSAOCG00000021795)	CNNM2 (ENSAOCG00000021810)	uchl5 (ENSAOCG00000021853)
Spiny chromis	MODERN SPECIES	22											krt94 (ENSAPOG00000015225)	SMAP1 (ENSAPOG00000015235)	cenpk (ENSAPOG00000015249)	lbx1b (ENSAPOG00000015260)	slc2a15b (ENSAPOG00000015325)	fgf8b (ENSAPOG00000015344) #22	dpcd (ENSAPOG00000015370) #24	poll (ENSAPOG00000015387) #25	wbp1lb (ENSAPOG00000015408)	as3mt (ENSAPOG00000015417)	CNNM2 (ENSAPOG00000015454)	nt5c2b (ENSAPOG00000015537)	inab (ENSAPOG00000015546)	taf5 (ENSAPOG00000015600)	atp5md (ENSAPOG00000015614)	pdcd11 (ENSAPOG00000015629)	zgc:175214 (ENSAPOG00000015672)	CALHM1 (ENSAPOG00000015693)	ENSAPOG00000015720	zp3c (ENSAPOG00000015759)	rab40c (ENSAPOG00000015787)
Bicolor damselfish	MODERN SPECIES	816			ENSSPAG00000018321	KCNIP2 (ENSSPAG00000018330) #19	jupa (ENSSPAG00000018367)	ENSSPAG00000018438	ENSSPAG00000018493	krt99 (ENSSPAG00000018499)	krt15 (ENSSPAG00000018517)	krt98 (ENSSPAG00000018531)	krt94 (ENSSPAG00000018562)	SMAP1 (ENSSPAG00000018581)	cenpk (ENSSPAG00000018618)	lbx1b (ENSSPAG00000018634)	slc2a15b (ENSSPAG00000018661)	fgf8b (ENSSPAG00000018697) #22	dpcd (ENSSPAG00000018765) #24	poll (ENSSPAG00000018791) #25	wbp1lb (ENSSPAG00000018811)	as3mt (ENSSPAG00000018827)	CNNM2 (ENSSPAG00000018856)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031.e.a #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Burton s mouthbrooder	MODERN SPECIES	337	ENSHBUG00000019327 ##20	si:dkey-93h22.8 (ENSHBUG00000019347) #14	ldb1b (ENSHBUG00000019378) #15	armh3 (ENSHBUG00000019565) #18	KCNIP2 (ENSHBUG00000019621) #19	jupa (ENSHBUG00000019714)	ENSHBUG00000000586	ENSHBUG00000019747	krt15 (ENSHBUG00000019759)	krt98 (ENSHBUG00000019771)	krt94 (ENSHBUG00000019853)	SMAP1 (ENSHBUG00000019912)	cenpk (ENSHBUG00000019922)	lbx1b (ENSHBUG00000019934)	slc2a15b (ENSHBUG00000019972)	fgf8b (ENSHBUG00000020004) #22	dpcd (ENSHBUG00000020045) #24	poll (ENSHBUG00000020101) #25	wbp1lb (ENSHBUG00000020110)	as3mt (ENSHBUG00000020119)	CNNM2 (ENSHBUG00000020136)	nt5c2b (ENSHBUG00000020172)	inab (ENSHBUG00000020185)	ENSHBUG00000020202	atp5md (ENSHBUG00000020211)	pdcd11 (ENSHBUG00000020226)	zgc:175214 (ENSHBUG00000020259)	CALHM1 (ENSHBUG00000020282)	ENSHBUG00000020298	zp3c (ENSHBUG00000020330)	rab40c (ENSHBUG00000020360)
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031.e.a #24	ENSGT00390000014031.f #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031.f #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
Zebra mbuna	MODERN SPECIES	1109	si:dkey-93h22.8 (ENSMZEG00005008228) #14	ldb1b (ENSMZEG00005008245) #15	armh3 (ENSMZEG00005008281) #18	KCNIP2 (ENSMZEG00005008364) #19	jupa (ENSMZEG00005008391)	ENSMZEG00005008443	ENSMZEG00005008461	krt99 (ENSMZEG00005008473)	krt15 (ENSMZEG00005008487)	krt98 (ENSMZEG00005008496)	krt94 (ENSMZEG00005008511)	SMAP1 (ENSMZEG00005008548)	cenpk (ENSMZEG00005008583)	lbx1b (ENSMZEG00005008600)	slc2a15b (ENSMZEG00005008607)	fgf8b (ENSMZEG00005008642) #22	dpcd (ENSMZEG00005008653) #24	poll (ENSMZEG00005008677) #25	wbp1lb (ENSMZEG00005008705)	as3mt (ENSMZEG00005008714)	CNNM2 (ENSMZEG00005008760)	nt5c2b (ENSMZEG00005008782)	inab (ENSMZEG00005008834)	taf5 (ENSMZEG00005008902)	atp5md (ENSMZEG00005008937)	pdcd11 (ENSMZEG00005008949)	zgc:175214 (ENSMZEG00005008984)	CALHM1 (ENSMZEG00005009017)	zp3c (ENSMZEG00005009033)	ENSMZEG00005009071	rab40c (ENSMZEG00005009079)
Eastern happy	MODERN SPECIES	18	KCNIP2 (ENSACLG00000019119) #19	jupa (ENSACLG00000019071)	ENSACLG00000019016	ENSACLG00000019032	krt99 (ENSACLG00000019002)	krt15 (ENSACLG00000018979)	krt98 (ENSACLG00000018967)	krt94 (ENSACLG00000018950)	ENSACLG00000018945	SMAP1 (ENSACLG00000018925)	cenpk (ENSACLG00000018904)	lbx1b (ENSACLG00000018897)	slc2a15b (ENSACLG00000018850)	dpcd (ENSACLG00000018832) #24	poll (ENSACLG00000018810) #25	fgf8b (ENSACLG00000018794) #22	dpcd (ENSACLG00000018774) #24	poll (ENSACLG00000018740) #25	wbp1lb (ENSACLG00000018676)	as3mt (ENSACLG00000018658)	CNNM2 (ENSACLG00000018650)	CNNM2 (ENSACLG00000018611)	nt5c2b (ENSACLG00000018558)	inab (ENSACLG00000018488)	taf5 (ENSACLG00000018443)	atp5md (ENSACLG00000018433)	pdcd11 (ENSACLG00000018236)	zgc:175214 (ENSACLG00000018202)	CALHM1 (ENSACLG00000018194)	ENSACLG00000018163	zp3c (ENSACLG00000018082)
P. nyererei	MODERN SPECIES	360	si:dkey-93h22.8 (ENSPNYG00000002682) #14	ldb1b (ENSPNYG00000002704) #15	armh3 (ENSPNYG00000002768) #18	KCNIP2 (ENSPNYG00000002869) #19	jupa (ENSPNYG00000002908)	ENSPNYG00000002974	ENSPNYG00000003128	krt99 (ENSPNYG00000003158)	krt15 (ENSPNYG00000003167)	krt98 (ENSPNYG00000003181)	krt94 (ENSPNYG00000003207)	SMAP1 (ENSPNYG00000003337)	cenpk (ENSPNYG00000003376)	lbx1b (ENSPNYG00000003403)	slc2a15b (ENSPNYG00000003459)	fgf8b (ENSPNYG00000003504) #22	dpcd (ENSPNYG00000003582) #24	poll (ENSPNYG00000003613) #25	wbp1lb (ENSPNYG00000003656)	as3mt (ENSPNYG00000003664)	CNNM2 (ENSPNYG00000003686)	nt5c2b (ENSPNYG00000003781)	inab (ENSPNYG00000003822)	taf5 (ENSPNYG00000003900)	atp5md (ENSPNYG00000003949)	pdcd11 (ENSPNYG00000003979)	zgc:175214 (ENSPNYG00000004013)	ENSPNYG00000004053	zp3c (ENSPNYG00000004071)	ENSPNYG00000004095	wfikkn1 (ENSPNYG00000004110)
Lyretail cichlid	MODERN SPECIES	308	cant1b (ENSNBRG00000023191)	ENSNBRG00000023168 ##20	ENSNBRG00000023152 #14	ldb1b (ENSNBRG00000023119) #15	armh3 (ENSNBRG00000023092) #18	jupa (ENSNBRG00000023053)	ENSNBRG00000023010	ENSNBRG00000022987	krt15 (ENSNBRG00000022980)	krt98 (ENSNBRG00000022456)	krt94 (ENSNBRG00000022244)	SMAP1 (ENSNBRG00000022222)	cenpk (ENSNBRG00000022205)	lbx1b (ENSNBRG00000022180)	slc2a15b (ENSNBRG00000022146)	fgf8b (ENSNBRG00000022061) #22	dpcd (ENSNBRG00000022033) #24	poll (ENSNBRG00000022014) #25	wbp1lb (ENSNBRG00000021999)	as3mt (ENSNBRG00000021942)	CNNM2 (ENSNBRG00000021863)	nt5c2b (ENSNBRG00000021814)	inab (ENSNBRG00000021780)	taf5 (ENSNBRG00000021737)	pdcd11 (ENSNBRG00000021596)	zgc:175214 (ENSNBRG00000021568)	CALHM1 (ENSNBRG00000021549)	ENSNBRG00000021543	zp3c (ENSNBRG00000021522)	rab40c (ENSNBRG00000021497)	wfikkn1 (ENSNBRG00000021480)
Nile tilapia	MODERN SPECIES	18	si:dkey-93h22.8 (ENSONIG00000033606) #14	ldb1b (ENSONIG00000018797) #15	armh3 (ENSONIG00000018799) #18	KCNIP2 (ENSONIG00000018800) #19	jupa (ENSONIG00000018803)	ENSONIG00000018805	krt98 (ENSONIG00000018810)	ENSONIG00000032121	krt99 (ENSONIG00000018806)	krt15 (ENSONIG00000037937)	krt94 (ENSONIG00000018807)	SMAP1 (ENSONIG00000018813)	cenpk (ENSONIG00000018814)	lbx1b (ENSONIG00000036425)	slc2a15b (ENSONIG00000018816)	fgf8b (ENSONIG00000031278) #22	ENSONIG00000035113	dpcd (ENSONIG00000018819) #24	poll (ENSONIG00000018822) #25	wbp1lb (ENSONIG00000028546)	as3mt (ENSONIG00000018826)	CNNM2 (ENSONIG00000018828)	nt5c2b (ENSONIG00000018829)	inab (ENSONIG00000029868)	taf5 (ENSONIG00000018833)	atp5md (ENSONIG00000032430)	pdcd11 (ENSONIG00000018835)	zp3c (ENSONIG00000036390)	zgc:175214 (ENSONIG00000042378)	CALHM1 (ENSONIG00000036693)	ITPRIP (ENSONIG00000018844)
Midas cichlid	MODERN SPECIES	1113	cant1b (ENSACIG00000008270)	ENSACIG00000008238 ##20	ldb1b (ENSACIG00000008206) #15	armh3 (ENSACIG00000008152) #18	KCNIP2 (ENSACIG00000008119) #19	jupa (ENSACIG00000008093)	ENSACIG00000008033	ENSACIG00000008017	krt15 (ENSACIG00000007504)	krt98 (ENSACIG00000007137)	krt94 (ENSACIG00000007065)	smap1 (ENSACIG00000007041)	cenpk (ENSACIG00000007018)	lbx1b (ENSACIG00000007010)	slc2a15b (ENSACIG00000006971)	fgf8b (ENSACIG00000006920) #22	dpcd (ENSACIG00000006893) #24	poll (ENSACIG00000006868) #25	wbp1lb (ENSACIG00000006833)	as3mt (ENSACIG00000006747)	CNNM2 (ENSACIG00000006633)	nt5c2b (ENSACIG00000006589)	ENSACIG00000006583	inab (ENSACIG00000006532)	taf5 (ENSACIG00000006505)	ENSACIG00000006495	ENSACIG00000006458	zgc:175214 (ENSACIG00000006436)	CALHM1 (ENSACIG00000006422)	ENSACIG00000006405	zp3c (ENSACIG00000006384)
Atherinomorphae	ANCESTRAL SPECIES	23	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Cyprinodontiformes	ANCESTRAL SPECIES	24	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Aplocheiloidei	ANCESTRAL SPECIES	31	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Mangrove rivulus	MODERN SPECIES	38	si:dkey-93h22.8 (ENSKMAG00000019855) #14	ldb1b (ENSKMAG00000019878) #15	armh3 (ENSKMAG00000019917) #18	KCNIP2 (ENSKMAG00000019986) #19	jupa (ENSKMAG00000020020)	ENSKMAG00000020079	ENSKMAG00000020171	krt99 (ENSKMAG00000020185)	krt15 (ENSKMAG00000020200)	krt98 (ENSKMAG00000020226)	krt94 (ENSKMAG00000020377)	SMAP1 (ENSKMAG00000020892)	cenpk (ENSKMAG00000020916)	lbx1b (ENSKMAG00000020930)	slc2a15b (ENSKMAG00000020935)	fgf8b (ENSKMAG00000020954) #22	dpcd (ENSKMAG00000020966) #24	poll (ENSKMAG00000020989) #25	wbp1lb (ENSKMAG00000021022)	as3mt (ENSKMAG00000021033)	CNNM2 (ENSKMAG00000021059)	nt5c2b (ENSKMAG00000021101)	inab (ENSKMAG00000021148)	taf5 (ENSKMAG00000021159)	atp5md (ENSKMAG00000021173)	pdcd11 (ENSKMAG00000021182)	zgc:175214 (ENSKMAG00000021197)	CALHM1 (ENSKMAG00000021204)	zp3c (ENSKMAG00000021215)	ITPRIP (ENSKMAG00000021224)	rab40c (ENSKMAG00000021228)
Turquoise killifish	MODERN SPECIES	311															ENSNFUG00015009925	fgf8b (ENSNFUG00015009749) #22	dpcd (ENSNFUG00015009719) #24	poll (ENSNFUG00015009708) #25	ENSNFUG00015009698	WBP1LB (ENSNFUG00015009693)	as3mt (ENSNFUG00015009638)	CNNM2 (ENSNFUG00015009628)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
NAME_6	ANCESTRAL SPECIES	4	ENSGT00940000157798.b #19	ENSGT00950000183052.b.c.b.b.a.a.a.b.c.a.a.c	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a.g.d	ENSGT00950000182969.B.c.a.a.a.h	ENSGT00950000182969.B.c.a.a.a.g.c	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00940000161979.B.o.cb.d.a.a.a.b.a.a.b.a	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
Sailfin molly	MODERN SPECIES	2690																fgf8b (ENSPLAG00000023682) #22	dpcd (ENSPLAG00000023661) #24	poll (ENSPLAG00000023633) #25
Amazon molly	MODERN SPECIES	263	ENSPFOG00000003564	ENSPFOG00000003771	krt99 (ENSPFOG00000003777)	krt15 (ENSPFOG00000023468)	krt98 (ENSPFOG00000004256)	ENSPFOG00000003788	ENSPFOG00000023416	krt94 (ENSPFOG00000004335)	SMAP1 (ENSPFOG00000004432)	cenpk (ENSPFOG00000004611)	SMAP1 (ENSPFOG00000021952)	cenpk (ENSPFOG00000004715)	lbx1b (ENSPFOG00000004721)	ENSPFOG00000024163	slc2a15b (ENSPFOG00000004745)	fgf8b (ENSPFOG00000005060) #22	dpcd (ENSPFOG00000005133) #24	poll (ENSPFOG00000005193) #25	ENSPFOG00000005288	wbp1lb (ENSPFOG00000005308)	as3mt (ENSPFOG00000005360)	CNNM2 (ENSPFOG00000005465)	ENSPFOG00000023945	nt5c2b (ENSPFOG00000005673)	inab (ENSPFOG00000005819)	taf5 (ENSPFOG00000005851)	atp5md (ENSPFOG00000005996)	pdcd11 (ENSPFOG00000006012)	zgc:175214 (ENSPFOG00000006256)	CALHM1 (ENSPFOG00000006328)	ENSPFOG00000006350
Guppy	MODERN SPECIES	439	ENSPREG00000000449	KCNIP2 (ENSPREG00000000450) #19	ENSPREG00000000451	jupa (ENSPREG00000000452)	ENSPREG00000000453	ENSPREG00000000454	krt99 (ENSPREG00000000455)	krt15 (ENSPREG00000000456)	krt98 (ENSPREG00000000457)	ENSPREG00000000458	krt94 (ENSPREG00000000459)	SMAP1 (ENSPREG00000000460)	cenpk (ENSPREG00000000461)	lbx1b (ENSPREG00000000462)	slc2a15b (ENSPREG00000000463)	fgf8b (ENSPREG00000000464) #22	dpcd (ENSPREG00000000465) #24	poll (ENSPREG00000000466) #25	ENSPREG00000000467	wbp1lb (ENSPREG00000000468)	as3mt (ENSPREG00000000469)	CNNM2 (ENSPREG00000000470)	nt5c2b (ENSPREG00000000471)	inab (ENSPREG00000000472)	taf5 (ENSPREG00000000473)	atp5md (ENSPREG00000000474)	pdcd11 (ENSPREG00000000475)	zgc:175214 (ENSPREG00000000476)	CALHM1 (ENSPREG00000000477)	ENSPREG00000000478	rab40c (ENSPREG00000000479)
Platyfish	MODERN SPECIES	19	ENSXMAG00000029713	ENSXMAG00000023553	jupa (ENSXMAG00000000209)	ENSXMAG00000025286	ENSXMAG00000000197	krt99 (ENSXMAG00000023618)	krt15 (ENSXMAG00000000173)	krt98 (ENSXMAG00000000157)	ENSXMAG00000025322	ENSXMAG00000023373	krt94 (ENSXMAG00000000155)	SMAP1 (ENSXMAG00000000144)	cenpk (ENSXMAG00000000139)	lbx1b (ENSXMAG00000012488)	slc2a15b (ENSXMAG00000000115)	fgf8b (ENSXMAG00000021661) #22	dpcd (ENSXMAG00000000098) #24	poll (ENSXMAG00000000075) #25	ENSXMAG00000029703	wbp1lb (ENSXMAG00000000063)	as3mt (ENSXMAG00000000056)	CNNM2 (ENSXMAG00000000054)	nt5c2b (ENSXMAG00000029312)	inab (ENSXMAG00000001377)	atp5md (ENSXMAG00000004636)	taf5 (ENSXMAG00000001343)	pdcd11 (ENSXMAG00000004638)	zgc:175214 (ENSXMAG00000026427)	CALHM1 (ENSXMAG00000028928)	ENSXMAG00000004659	rab40c (ENSXMAG00000004660)
NAME_4	ANCESTRAL SPECIES	28	ENSGT00950000183137.a.l #14	ENSGT00390000005639.a.b.d.b #15	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b
Mummichog	MODERN SPECIES	516																fgf8b (ENSFHEG00000003480) #22	dpcd (ENSFHEG00000003458) #24	poll (ENSFHEG00000023246) #25	wbp1lb (ENSFHEG00000023168)	as3mt (ENSFHEG00000023153)	CNNM2 (ENSFHEG00000023134)	nt5c2b (ENSFHEG00000023123)	inab (ENSFHEG00000023068)	ENSFHEG00000023060	atp5md (ENSFHEG00000023039)	pdcd11 (ENSFHEG00000022997)	zgc:175214 (ENSFHEG00000022752)	CALHM1 (ENSFHEG00000022746)	zp3c (ENSFHEG00000022739)	ENSFHEG00000022735	rab40c (ENSFHEG00000022727)
Sheepshead minnow	MODERN SPECIES	422	armh3 (ENSCVAG00000019564) #18	ENSCVAG00000019480 #19	jupa (ENSCVAG00000019461)	ENSCVAG00000019409	ENSCVAG00000019152	krt99 (ENSCVAG00000019139)	krt15 (ENSCVAG00000019131)	krt98 (ENSCVAG00000019102)	ENSCVAG00000000499	ENSCVAG00000019084	krt94 (ENSCVAG00000019039)	SMAP1 (ENSCVAG00000018803)	cenpk (ENSCVAG00000018796)	lbx1b (ENSCVAG00000018786)	slc2a15b (ENSCVAG00000018773)	fgf8b (ENSCVAG00000018762) #22	dpcd (ENSCVAG00000018755) #24	poll (ENSCVAG00000018729) #25	wbp1lb (ENSCVAG00000018695)	as3mt (ENSCVAG00000018689)	CNNM2 (ENSCVAG00000018655)
Oryzias	ANCESTRAL SPECIES	28	ENSGT00390000005639.a.b.d.b #15	ENSGT00940000158005	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b	ENSGT00940000167090
Oryzias_b	ANCESTRAL SPECIES	25	ENSGT00390000005639.a.b.d.b #15	ENSGT00940000158005	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b	ENSGT00940000167090
Indian medaka	MODERN SPECIES	35	ldb1b (ENSOMEG00000012071) #15	tk2 (ENSOMEG00000012043)	armh3 (ENSOMEG00000011996) #18	KCNIP2 (ENSOMEG00000011905) #19	jupa (ENSOMEG00000011864)	ENSOMEG00000011780	ENSOMEG00000011746	krt99 (ENSOMEG00000011727)	ENSOMEG00000011684	krt98 (ENSOMEG00000011645)	krt94 (ENSOMEG00000011603)	SMAP1 (ENSOMEG00000011561)	cenpk (ENSOMEG00000011482)	lbx1b (ENSOMEG00000011455)	slc2a15b (ENSOMEG00000011443)	fgf8b (ENSOMEG00000011400) #22	dpcd (ENSOMEG00000011358) #24	poll (ENSOMEG00000011333) #25	wbp1lb (ENSOMEG00000011311)	CNNM2 (ENSOMEG00000011258)	nt5c2b (ENSOMEG00000011133)	inab (ENSOMEG00000011083)	taf5 (ENSOMEG00000011058)	atp5md (ENSOMEG00000010965)	ENSOMEG00000010947	pdcd11 (ENSOMEG00000010904)	zgc:175214 (ENSOMEG00000010830)	CALHM1 (ENSOMEG00000010803)	ENSOMEG00000010787	rab40c (ENSOMEG00000010770)	wfikkn1 (ENSOMEG00000010737)
Javanese ricefish	MODERN SPECIES		tk2 (ENSOJAG00000001245)	armh3 (ENSOJAG00000001194) #18	KCNIP2 (ENSOJAG00000001166) #19	jupa (ENSOJAG00000000979)	ENSOJAG00000000881	ENSOJAG00000000871	krt99 (ENSOJAG00000000865)	ENSOJAG00000000812	krt98 (ENSOJAG00000000775)	KRT19 (ENSOJAG00000000485)	ENSOJAG00000000325	SMAP1 (ENSOJAG00000000318)	cenpk (ENSOJAG00000000304)	lbx1b (ENSOJAG00000000302)	slc2a15b (ENSOJAG00000000287)	fgf8b (ENSOJAG00000000269) #22	dpcd (ENSOJAG00000000263) #24	poll (ENSOJAG00000000244) #25	wbp1lb (ENSOJAG00000000223)	as3mt (ENSOJAG00000000202)	CNNM2 (ENSOJAG00000000181)	inab (ENSOJAG00000000103)	taf5 (ENSOJAG00000000065)	atp5md (ENSOJAG00000000058)	zgc:175214 (ENSOJAG00000020287)	CALHM1 (ENSOJAG00000020274)	ENSOJAG00000020252	rab40c (ENSOJAG00000020244)	wfikkn1 (ENSOJAG00000020222)	mettl26 (ENSOJAG00000020215)	ENSOJAG00000020098
Oryzias_a	ANCESTRAL SPECIES	34	ENSGT00390000005639.a.b.d.b #15	ENSGT00940000158005	ENSGT00390000002554 #18	ENSGT00940000157798.b #19	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT00400000024592	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.a.a	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000154418.a.a.b	ENSGT00940000163289.b.a.a	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT00940000158979.e.b	ENSGT00940000167090
Japanese Medaka HdrR	MODERN SPECIES		ldb1b (ENSORLG00000012373) #15	tk2 (ENSORLG00000012380)	armh3 (ENSORLG00000012426) #18	ENSORLG00000012486 #19	jupa (ENSORLG00000012542)	ENSORLG00000025102	ENSORLG00000012551	krt99 (ENSORLG00000012569)	ENSORLG00000012618	krt98 (ENSORLG00000012646)	krt94 (ENSORLG00000012662)	SMAP1 (ENSORLG00000012694)	cenpk (ENSORLG00000012705)	lbx1b (ENSORLG00000012711)	slc2a15b (ENSORLG00000012848)	fgf8b (ENSORLG00000012857) #22	dpcd (ENSORLG00000027280) #24	poll (ENSORLG00000012875) #25	wbp1lb (ENSORLG00000024654)	as3mt (ENSORLG00000012900)	CNNM2 (ENSORLG00000012918)	inab (ENSORLG00000012931)	nt5c2b (ENSORLG00000012969)	taf5 (ENSORLG00000012986)	atp5md (ENSORLG00000024513)	pdcd11 (ENSORLG00000012995)	zgc:175214 (ENSORLG00000026419)	CALHM1 (ENSORLG00000013016)	ENSORLG00000013028	RAB40C (ENSORLG00000013043)	wfikkn1 (ENSORLG00000013057)
Chinese medaka	MODERN SPECIES	305	ldb1b (ENSOSIG00000000167) #15	tk2 (ENSOSIG00000000108)	armh3 (ENSOSIG00000016208) #18	KCNIP2 (ENSOSIG00000016202) #19	jupa (ENSOSIG00000016174)	ENSOSIG00000016159	ENSOSIG00000016157	ENSOSIG00000016154	ENSOSIG00000016151	krt98 (ENSOSIG00000016149)	krt94 (ENSOSIG00000016147)	ENSOSIG00000016145	cenpk (ENSOSIG00000016144)	lbx1b (ENSOSIG00000016142)	slc2a15b (ENSOSIG00000016129)	fgf8b (ENSOSIG00000015992) #22	dpcd (ENSOSIG00000015989) #24	poll (ENSOSIG00000015983) #25	wbp1lb (ENSOSIG00000015980)	as3mt (ENSOSIG00000015978)	CNNM2 (ENSOSIG00000015977)	inab (ENSOSIG00000015976)	nt5c2b (ENSOSIG00000015706)	taf5 (ENSOSIG00000015439)	atp5md (ENSOSIG00000015431)	pdcd11 (ENSOSIG00000015423)	zgc:175214 (ENSOSIG00000015419)	CALHM1 (ENSOSIG00000015418)	ITPRIP (ENSOSIG00000015417)	rab40c (ENSOSIG00000015415)	wfikkn1 (ENSOSIG00000015413)
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005003071 #14	ldb1b (ENSMMDG00005003141) #15	armh3 (ENSMMDG00005004934) #18	KCNIP2 (ENSMMDG00005004975) #19	jupa (ENSMMDG00005005176)	ENSMMDG00005007084	ENSMMDG00005007443	krt99 (ENSMMDG00005007454)	krt15 (ENSMMDG00005007456)	krt98 (ENSMMDG00005007462)	krt94 (ENSMMDG00005007671)	SMAP1 (ENSMMDG00005007676)	cenpk (ENSMMDG00005007682)	lbx1b (ENSMMDG00005007684)	slc2a15b (ENSMMDG00005007691)	fgf8b (ENSMMDG00005007695) #22	dpcd (ENSMMDG00005007698) #24	poll (ENSMMDG00005007701) #25	wbp1lb (ENSMMDG00005007703)	as3mt (ENSMMDG00005007716)	CNNM2 (ENSMMDG00005007741)	nt5c2b (ENSMMDG00005007771)	inab (ENSMMDG00005007875)	taf5 (ENSMMDG00005008045)	atp5md (ENSMMDG00005008056)	pdcd11 (ENSMMDG00005008071)	zgc:175214 (ENSMMDG00005008175)	CALHM1 (ENSMMDG00005008179)	ENSMMDG00005008183	zp3c (ENSMMDG00005008188)	rab40c (ENSMMDG00005008191)
Protacanthopterygii	ANCESTRAL SPECIES	142	ENSGT00940000157732.f.a.e	ENSGT00390000000909	ENSGT00940000156184.a	ENSGT00980000198902	ENSGT00940000153431.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.e.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z	ENSGT00940000155884.b	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164095.b	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515 #25	ENSGT00950000183109.c.a.a.a.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a	ENSGT00940000154418.a.a.b	ENSGT00940000153342.a	ENSGT00940000166377	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a	ENSGT01050000244827.D.b.b.b	ENSGT01030000234567.A.a.a.a.a.b.f	ENSGT00940000158979.e.b
Salmoninae	ANCESTRAL SPECIES	64	ENSGT00940000156696.B.g	ENSGT00940000157732.f.a.e.b	ENSGT00390000000909.f	ENSGT00940000156184.a.i	ENSGT00940000153431.b.r.a	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b.f	ENSGT01100000263476.B.b.a.b	ENSGT00950000183029.B.j.e.b	ENSGT00940000155933.b.b	ENSGT00940000155134.z.f.a.b	ENSGT00940000155884.b.d	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164095.b.a	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515.k.a #25	ENSGT00950000183109.c.a.a.a.b.a.a	ENSGT00940000158515.l #25	ENSGT00950000183109.c.a.a.a.b.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a.f	ENSGT00940000154418.a.a.b.c.b	ENSGT00940000153342.a.f	ENSGT00940000166377.g	ENSGT00940000153342.a.e.a.b	ENSGT00940000166377.h	ENSGT00390000012228	ENSGT00940000166025.a
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4078																fgf8b (ENSHHUG00000007927) #22	dpcd (ENSHHUG00000008141) #24	poll (ENSHHUG00000008171) #25	wbp1lb (ENSHHUG00000008186)	as3mt (ENSHHUG00000008193)	ENSHHUG00000008202
Huchen	MODERN SPECIES	484	SLC24A3 (ENSHHUG00000046627)	RIN2 (ENSHHUG00000046592)	ENSHHUG00000046577	ENSHHUG00000046569	ENSHHUG00000046562	ENSHHUG00000046557	ENSHHUG00000046549	ENSHHUG00000046369	ENSHHUG00000046303	ENSHHUG00000046299	RIMS1 (ENSHHUG00000046260)	ENSHHUG00000046257	cenpk (ENSHHUG00000046254)	lbx1b (ENSHHUG00000046240)	slc2a15b (ENSHHUG00000046232)	fgf8b (ENSHHUG00000046083) #22	dpcd (ENSHHUG00000046070) #24	poll (ENSHHUG00000046062) #25	wbp1lb (ENSHHUG00000046059)	as3mt (ENSHHUG00000046047)	CNNM2 (ENSHHUG00000046045)	nt5c2b (ENSHHUG00000046006)	inab (ENSHHUG00000046004)	ENSHHUG00000045998
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00390000000909.f	ENSGT00940000156184.a.i	ENSGT00940000153431.b.r.a	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000154866.B.b.f	ENSGT01100000263476.A.b.a.b.a	ENSGT00940000155933.b.b.e.a	ENSGT00940000162741.b	ENSGT00950000183029.B.j.e.b	ENSGT00940000155933.b.b.e.b	ENSGT00940000155134.z.f.a.b	ENSGT00940000155884.b.d	ENSGT00390000006243	ENSGT00940000164611.b	ENSGT00940000164095.b.a	ENSGT00940000159518.b #22	ENSGT00390000014031 #24	ENSGT00940000158515.k.a #25	ENSGT00950000183109.c.a.a.a.b.b	ENSGT00390000001742.a	ENSGT00940000159034	ENSGT00940000163289.b.a.a.e	ENSGT00940000154418.a.a.b.c.b	ENSGT00940000153342.a.f	ENSGT00940000166377.g	ENSGT00940000153342.a.e.a.b	ENSGT00940000166377.h	ENSGT00390000012228	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a.j	ENSGT01050000244827.D.b.b.b.c
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	95	ENSGT00390000000909.e	ENSGT00940000156184.a.j	ENSGT00940000168136	ENSGT00980000198902	ENSGT00940000153431.b.r.a	ENSGT01030000234532.A.a.a.b.j.b.f	ENSGT00940000154866.B.b.e	ENSGT01100000263476.A.b.a.a	ENSGT00950000183029.B.j.e.b.a	ENSGT00940000155933.b.b.e.b	ENSGT00940000155134.z.f.b	ENSGT00940000155884.b.d.a	ENSGT00390000006243.l	ENSGT00940000164611.b.b	ENSGT00940000164095.b.a.b	ENSGT00940000159518.b.e #22	ENSGT00390000014031.k #24	ENSGT00940000158515.k.b #25	ENSGT00950000183109.c.a.a.a.b.a.b	ENSGT00390000001742.a	ENSGT00940000159034.s	ENSGT00940000163289.b.a.a.f	ENSGT00940000154418.a.a.b.c.a	ENSGT00940000153342.a.e.a.a	ENSGT00940000166377.g	ENSGT00390000012228.k
Atlantic salmon	MODERN SPECIES	11	stn1 (ENSSSAG00000009712)	SLK (ENSSSAG00000077165)	ENSSSAG00000089494	dtd1 (ENSSSAG00000077334)	SLC24A3 (ENSSSAG00000077343)	RIN2 (ENSSSAG00000077352)	ENSSSAG00000006741	ENSSSAG00000077363	ENSSSAG00000077370	ENSSSAG00000077417	ENSSSAG00000077953	ENSSSAG00000078828	cenpk (ENSSSAG00000000322)	lbx1b (ENSSSAG00000106457)	ENSSSAG00000000388	fgf8b (ENSSSAG00000097919) #22	dpcd (ENSSSAG00000000437) #24	poll (ENSSSAG00000008385) #25	wbp1lb (ENSSSAG00000111043)	as3mt (ENSSSAG00000000508)	ENSSSAG00000000557	nt5c2b (ENSSSAG00000078886)	inab (ENSSSAG00000079284)	pdcd11 (ENSSSAG00000079293)	zgc:175214 (ENSSSAG00000110688)	ENSSSAG00000112980	ENSSSAG00000079308	zp3c (ENSSSAG00000079310)	ENSSSAG00000079320	ENSSSAG00000079324	ENSSSAG00000108699
River trout	MODERN SPECIES	31	SH3PXD2A (ENSSTUG00000039294)	stn1 (ENSSTUG00000039267)	SLK (ENSSTUG00000038768)	dtd1 (ENSSTUG00000049789)	SLC24A3 (ENSSTUG00000049787)	ENSSTUG00000049780	ENSSTUG00000049775	ENSSTUG00000049772	ENSSTUG00000049762	ENSSTUG00000049586	RIMS1 (ENSSTUG00000049254)	ENSSTUG00000049196	cenpk (ENSSTUG00000049185)	lbx1b (ENSSTUG00000049180)	ENSSTUG00000049091	fgf8b (ENSSTUG00000049053) #22	dpcd (ENSSTUG00000049043) #24	poll (ENSSTUG00000049036) #25	wbp1lb (ENSSTUG00000049033)	as3mt (ENSSTUG00000048917)	CNNM2 (ENSSTUG00000048902)	nt5c2b (ENSSTUG00000048853)	ENSSTUG00000048836	inab (ENSSTUG00000048835)	taf5 (ENSSTUG00000048826)	atp5md (ENSSTUG00000048822)	taf5 (ENSSTUG00000048640)	atp5md (ENSSTUG00000048617)	pdcd11 (ENSSTUG00000048536)	zgc:175214 (ENSSTUG00000048511)	CALHM1 (ENSSTUG00000048506)
Salmo	ANCESTRAL SPECIES	37	ENSGT01030000234563.b.a.b.a.b.a.c.a.b	ENSGT00940000156696.B.h.a	ENSGT00940000157732.f.a.e.a	ENSGT00390000000909.f	ENSGT00940000156184.a.i	ENSGT01030000234532.A.a.a.b.j.b.e	ENSGT00940000154866.B.b.f	ENSGT01100000263476.A.b.a.b.a	ENSGT00950000183029.B.j.e.b.b	ENSGT00940000155933.b.b.e.a	ENSGT00940000155134.z.e.a	ENSGT00940000155884.b.d.b	ENSGT00390000006243.k	ENSGT00940000164611.b.a	ENSGT00940000164095.b.a.a	ENSGT00940000159518.b.f #22	ENSGT00390000014031.l #24	ENSGT00940000158515.k.a #25	ENSGT00950000183109.c.a.a.a.b.a.a	ENSGT00940000159034.t	ENSGT00940000163289.b.a.a.e	ENSGT00940000154418.a.a.b.c.b	ENSGT00940000153342.a.e.a.b	ENSGT00940000153342.a.f	ENSGT00940000166377.h	ENSGT00390000012228.l	ENSGT00940000166025.a	ENSGT01030000234610.b.a.b.a.j	ENSGT01050000244827.D.b.b.b.c	ENSGT01030000234567.A.a.a.a.a.b.f.d	ENSGT00940000158979.e.b.b
River trout	MODERN SPECIES	5	slkb (ENSSTUG00000025673)	ENSSTUG00000026640	ENSSTUG00000026668	dtd1 (ENSSTUG00000026692)	SLC24A3 (ENSSTUG00000026705)	RIN2 (ENSSTUG00000026715)	ENSSTUG00000026730	ENSSTUG00000026742	ENSSTUG00000026751	ENSSTUG00000026821	RIMS1 (ENSSTUG00000026976)	ENSSTUG00000030783	cenpk (ENSSTUG00000030796)	lbx1b (ENSSTUG00000030824)	ENSSTUG00000030833	fgf8b (ENSSTUG00000030879) #22	dpcd (ENSSTUG00000030884) #24	poll (ENSSTUG00000030901) #25	wbp1lb (ENSSTUG00000030911)	CNNM2 (ENSSTUG00000030920)	nt5c2b (ENSSTUG00000030969)	inab (ENSSTUG00000031227)	taf5 (ENSSTUG00000031238)	atp5md (ENSSTUG00000031569)	pdcd11 (ENSSTUG00000031605)	zgc:175214 (ENSSTUG00000032184)	CALHM1 (ENSSTUG00000032228)	ITPRIP (ENSSTUG00000032233)	zp3c (ENSSTUG00000032247)	ENSSTUG00000032260	RAB40C (ENSSTUG00000032265)
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000108873	ENSSSAG00000006769	ENSSSAG00000116802	ENSSSAG00000006755	ENSSSAG00000116362	ENSSSAG00000077361	ENSSSAG00000006735	ENSSSAG00000006679	ENSSSAG00000005004	ENSSSAG00000000250	ENSSSAG00000000305	cenpk (ENSSSAG00000078834)	lbx1b (ENSSSAG00000092954)	ENSSSAG00000094147	ENSSSAG00000073607	fgf8b (ENSSSAG00000008393) #22	dpcd (ENSSSAG00000008388) #24	poll (ENSSSAG00000000450) #25	wbp1lb (ENSSSAG00000113488)	as3mt (ENSSSAG00000008326)	ENSSSAG00000008311	inab (ENSSSAG00000104505)	nt5c2b (ENSSSAG00000000687)	ENSSSAG00000095552	taf5 (ENSSSAG00000004352)	usmg5 (ENSSSAG00000004194)	pdcd11 (ENSSSAG00000004225)	zgc:175214 (ENSSSAG00000103223)	CALHM1 (ENSSSAG00000116082)	ENSSSAG00000073615	zp3c (ENSSSAG00000073611)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT00940000157732.f.a.e.b	ENSGT00390000000909.f	ENSGT00940000156184.a.i.a	ENSGT00940000153431.b.r.a	ENSGT01030000234532.A.a.a.b.j.b.g	ENSGT01030000234532.A.a.a.b.k	ENSGT00940000154866.B.b.e	ENSGT01100000263476.A.b.a.a	ENSGT00950000183029.B.j.f	ENSGT00940000155933.b.b.e.b	ENSGT00940000155134.z.f.a.b	ENSGT00940000155884.b.d	ENSGT00390000006243.m	ENSGT00940000164611.b.c.b	ENSGT00940000164095.b.b	ENSGT00940000159518.b.g #22	ENSGT00390000014031.i #24	ENSGT00940000158515.l #25	ENSGT00950000183109.c.a.a.a.b.b.b	ENSGT00390000001742.a.m	ENSGT00940000159034	ENSGT00940000163289.b.a.a.f	ENSGT00940000154418.a.a.b.c.a	ENSGT00940000153342.a.e.b	ENSGT00940000166377.h	ENSGT00390000012228.n	ENSGT00940000166025.a.e	ENSGT01030000234610.b.a.b.a.j	ENSGT01050000244827.D.b.b.b.c	ENSGT01030000234567.A.a.a.a.a.b.f.e	ENSGT00940000158979.e.b.c
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	4	SLK (ENSOMYG00000035986)	DTD1 (ENSOMYG00000035372)	SLC24A3 (ENSOMYG00000035348)	ENSOMYG00000063915	RIN2 (ENSOMYG00000035334)	ENSOMYG00000035318	ENSOMYG00000073188	ENSOMYG00000035283	ENSOMYG00000035209	ENSOMYG00000034676	ENSOMYG00000031395	ENSOMYG00000030949	cenpk (ENSOMYG00000030919)	lbx1b (ENSOMYG00000030905)	ENSOMYG00000030866	fgf8b (ENSOMYG00000003927) #22	dpcd (ENSOMYG00000030819) #24	poll (ENSOMYG00000030792) #25	wbp1lb (ENSOMYG00000030780)	as3mt (ENSOMYG00000030751)	ENSOMYG00000030734	nt5c2b (ENSOMYG00000029057)	inab (ENSOMYG00000028395)	taf5 (ENSOMYG00000028324)	atp5md (ENSOMYG00000028298)	pdcd11 (ENSOMYG00000027938)	zgc:175214 (ENSOMYG00000027731)	CALHM1 (ENSOMYG00000027719)	ENSOMYG00000027713	zp3c (ENSOMYG00000061831)	ENSOMYG00000075555
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000074597	DTD1 (ENSOMYG00000032719)	SLC24A3 (ENSOMYG00000032700)	ENSOMYG00000056365	RIN2 (ENSOMYG00000032641)	ENSOMYG00000032618	ENSOMYG00000032590	ENSOMYG00000032529	ENSOMYG00000060658	ENSOMYG00000031469	ENSOMYG00000030981	ENSOMYG00000030782	cenpk (ENSOMYG00000030767)	lbx1b (ENSOMYG00000030762)	ENSOMYG00000030288	fgf8b (ENSOMYG00000069031) #22	dpcd (ENSOMYG00000030065) #24	poll (ENSOMYG00000030037) #25	wbp1lb (ENSOMYG00000030012)	as3mt (ENSOMYG00000029994)	ENSOMYG00000049904	nt5c2b (ENSOMYG00000012141)	ENSOMYG00000068185	inab (ENSOMYG00000012795)	taf5 (ENSOMYG00000012803)	atp5md (ENSOMYG00000012813)	pdcd11 (ENSOMYG00000012951)	zgc:175214 (ENSOMYG00000013756)	ENSOMYG00000013766	zp3c (ENSOMYG00000013792)	ENSOMYG00000013801
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00940000156696.B.g	ENSGT00940000157732.f.a.e.b	ENSGT00390000000909.f	ENSGT00940000156184.a.i.a	ENSGT00940000153431.b.r.a	ENSGT01030000234532.A.a.a.b.k	ENSGT00940000154866.B.b.e	ENSGT01100000263476.A.b.a.b.b.a.b	ENSGT00950000183029.B.j.f	ENSGT00940000155933.b.b.e.b	ENSGT00940000155134.z.f.a.b	ENSGT00940000155884.b.d	ENSGT00390000006243.m	ENSGT00940000164611.b.c.b	ENSGT00940000164095.b.b	ENSGT00940000159518.b.g #22	ENSGT00940000158515.l.a #25	ENSGT00390000014031.i #24	ENSGT00940000158515.k.b #25	ENSGT00940000158515.l.b #25	ENSGT00950000183109.c.a.a.a.b.b.b	ENSGT00390000001742.a.m	ENSGT00940000159034.q.a	ENSGT00940000163289.b.a.a.f	ENSGT00940000154418.a.a.b.d	ENSGT00940000166377.h	ENSGT00390000012228.n	ENSGT00940000166025.a.e	ENSGT01030000234610.b.a.b.a.j	ENSGT01050000244827.D.b.b.b.c	ENSGT01030000234567.A.a.a.a.a.b.f.e
Chinook salmon	MODERN SPECIES	25	rpsa (ENSOTSG00005013922)	slc25a38b (ENSOTSG00005013921)	myh9a (ENSOTSG00005047170)	PNPLA6 (ENSOTSG00005046922)	ENSOTSG00005046880	ENSOTSG00005046879	caly (ENSOTSG00005046878)	ENSOTSG00005046877	ENSOTSG00005046876	ENSOTSG00005046875	neurl1aa (ENSOTSG00005046873)	ENSOTSG00005046872	stn1 (ENSOTSG00005046865)	slkb (ENSOTSG00005046820)	dtd1 (ENSOTSG00005046814)	fgf8b (ENSOTSG00005046812) #22	ENSOTSG00005046811 #25	dpcd (ENSOTSG00005046810) #24	poll (ENSOTSG00005046807) #25	wbp1lb (ENSOTSG00005046806)	as3mt (ENSOTSG00005046768)	CNNM2 (ENSOTSG00005046767)	nt5c2b (ENSOTSG00005046766)	inab (ENSOTSG00005046765)	ENSOTSG00005046763	taf5 (ENSOTSG00005046760)	atp5md (ENSOTSG00005046758)	pdcd11 (ENSOTSG00005046755)	zgc:175214 (ENSOTSG00005046754)	CALHM1 (ENSOTSG00005046753)	ENSOTSG00005046752
Coho salmon	MODERN SPECIES	12	stn1 (ENSOKIG00005024027)	slkb (ENSOKIG00005024184)	DTD1 (ENSOKIG00005024674)	ENSOKIG00005024713	RIN2 (ENSOKIG00005024742)	ENSOKIG00005024776	ENSOKIG00005024790	ENSOKIG00005024801	ENSOKIG00005024807	ENSOKIG00005024829	RIMS1 (ENSOKIG00005024968)	ENSOKIG00005025675	ENSOKIG00005025692	lbx1b (ENSOKIG00005025704)	ENSOKIG00005025752	fgf8b (ENSOKIG00005026139) #22	dpcd (ENSOKIG00005026181) #24	ENSOKIG00005026202 #25	poll (ENSOKIG00005026221) #25	wbp1lb (ENSOKIG00005026288)	as3mt (ENSOKIG00005026319)	CNNM2 (ENSOKIG00005026462)	nt5c2b (ENSOKIG00005026543)	inab (ENSOKIG00005027163)	ENSOKIG00005027173	taf5 (ENSOKIG00005027198)	atp5md (ENSOKIG00005027353)	pdcd11 (ENSOKIG00005027405)	zgc:175214 (ENSOKIG00005027745)	CALHM1 (ENSOKIG00005027776)	ITPRIP (ENSOKIG00005027784)
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000156184.a.j	ENSGT00980000198902	ENSGT00940000153431.b.r.b	ENSGT01030000234532.A.a.a.b.j.b.h	ENSGT00940000154866.B.b.f	ENSGT01100000263476.A.b.a.b.a	ENSGT01100000263476.A.b.a.b.b.a.a	ENSGT00950000183029.B.j.e.b.c.a	ENSGT00940000155933.b.b.e.a	ENSGT01080000258962	ENSGT00940000155134.z.e	ENSGT00940000155884.b.c	ENSGT00390000006243.n	ENSGT00940000164611.b.c.a	ENSGT00940000164095.b.a	ENSGT00940000159518.b.h #22	ENSGT00390000014031.j #24	ENSGT00940000158515.k.a #25	ENSGT00950000183109.c.a.a.a.b.b.a	ENSGT00390000001742.a.n	ENSGT00940000154418.a.a.b.c.b	ENSGT00940000153342.a.f	ENSGT00940000166377.g	ENSGT00390000012228.m	ENSGT00940000166025.a.f	ENSGT01030000234610.b.a.b.a.i	ENSGT01050000244827.D.b.b.b.d	ENSGT01030000234567.A.a.a.a.a.b.f.f	ENSGT00940000158979.e.b.d	ENSGT00940000167090.e	ENSGT00390000010750.a.r
Oncorhynchus_a	ANCESTRAL SPECIES	51	ENSGT00940000156184.a.j	ENSGT00980000198902	ENSGT00940000153431.b.r.b	ENSGT01030000234532.A.a.a.b.j.b.g	ENSGT01030000234532.A.a.a.b.j.b.h	ENSGT00940000154866.B.b.f	ENSGT01100000263476.A.b.a.b.a	ENSGT01100000263476.A.b.a.b.b.a.a	ENSGT00950000183029.B.j.e.b.c.a	ENSGT00940000155933.b.b.e.a	ENSGT01080000258962	ENSGT00940000155884.b.c	ENSGT00390000006243.n	ENSGT00940000164611.b.c.a	ENSGT00940000164095.b.a	ENSGT00940000159518.b.h #22	ENSGT00390000014031.j #24	ENSGT00940000158515.k.a #25	ENSGT00950000183109.c.a.a.a.b.b.a	ENSGT00390000001742.a.n	ENSGT00940000159034.r	ENSGT00940000163289.b.a.a.e	ENSGT00940000154418.a.a.b.c.b	ENSGT00940000153342.a.f	ENSGT00940000166377.g	ENSGT00390000012228.m	ENSGT00940000166025.a.f	ENSGT01030000234610.b.a.b.a.i	ENSGT01030000234567.A.a.a.a.a.b.f.f	ENSGT00940000158979.e.b.d	ENSGT00940000167090.e
Coho salmon	MODERN SPECIES		ENSOKIG00005030775	ENSOKIG00005030802	RIN2 (ENSOKIG00005030826)	ENSOKIG00005030848	ENSOKIG00005030879	ENSOKIG00005030893	ENSOKIG00005031032	ENSOKIG00005031804	RIMS1 (ENSOKIG00005031962)	ENSOKIG00005033433	ENSOKIG00005033446	cenpk (ENSOKIG00005033460)	lbx1b (ENSOKIG00005033488)	ENSOKIG00005033542	ENSOKIG00005033829	fgf8b (ENSOKIG00005033833) #22	dpcd (ENSOKIG00005033839) #24	poll (ENSOKIG00005033862) #25	wbp1lb (ENSOKIG00005033879)	as3mt (ENSOKIG00005033893)	CNNM2 (ENSOKIG00005034003)	nt5c2b (ENSOKIG00005034097)	inab (ENSOKIG00005034898)	taf5 (ENSOKIG00005034921)	atp5md (ENSOKIG00005035336)	pdcd11 (ENSOKIG00005035428)	zgc:175214 (ENSOKIG00005000032)	CALHM1 (ENSOKIG00005000061)	ENSOKIG00005000126	zp3c (ENSOKIG00005000136)	ENSOKIG00005000146
Chinook salmon	MODERN SPECIES	11	SOX10 (ENSOTSG00005000294)	KCNJ4 (ENSOTSG00005000296)	ENSOTSG00005000297	ENSOTSG00005000298	zgc:158803 (ENSOTSG00005000299)	ENSOTSG00005000301	mb (ENSOTSG00005000302)	serhl (ENSOTSG00005000303)	ENSOTSG00005000304	septin3 (ENSOTSG00005000309)	atf7ip (ENSOTSG00005001409)	ENSOTSG00005001411	si:ch211-243a20.3 (ENSOTSG00005001412)	f8a (ENSOTSG00005001414)	emp1 (ENSOTSG00005001417)	fgf8b (ENSOTSG00005001420) #22	dpcd (ENSOTSG00005001424) #24	poll (ENSOTSG00005001427) #25	wbp1lb (ENSOTSG00005001429)	as3mt (ENSOTSG00005001433)	CNNM2 (ENSOTSG00005001577)	ENSOTSG00005001579	nt5c2b (ENSOTSG00005001590)	inab (ENSOTSG00005002024)	atp5md (ENSOTSG00005002029)	pdcd11 (ENSOTSG00005002044)	zgc:175214 (ENSOTSG00005002249)	ENSOTSG00005002253	zp3c (ENSOTSG00005002257)	RAB40C (ENSOTSG00005002259)	wfikkn1 (ENSOTSG00005002262)
Northern pike	MODERN SPECIES	8	stn1 (ENSELUG00000005119)	slkb (ENSELUG00000005050)	ENSELUG00000004991	dtd1 (ENSELUG00000004973)	SLC24A3 (ENSELUG00000004952)	RIN2 (ENSELUG00000004895)	ENSELUG00000004838	ENSELUG00000004764	ENSELUG00000025992	RIMS1 (ENSELUG00000004662)	SMAP1 (ENSELUG00000004599)	cenpk (ENSELUG00000004572)	lbx1b (ENSELUG00000004561)	ENSELUG00000029821	slc2a15b (ENSELUG00000004537)	fgf8b (ENSELUG00000004508) #22	dpcd (ENSELUG00000004483) #24	poll (ENSELUG00000004410) #25	wbp1lb (ENSELUG00000004387)	as3mt (ENSELUG00000004368)	CNNM2 (ENSELUG00000004339)	nt5c2b (ENSELUG00000004308)	inab (ENSELUG00000004266)	taf5 (ENSELUG00000004248)	atp5md (ENSELUG00000004222)	pdcd11 (ENSELUG00000004211)	zgc:175214 (ENSELUG00000026896)	CALHM1 (ENSELUG00000004161)	MPV17L (ENSELUG00000004143)	bmerb1 (ENSELUG00000004115)	MARF1 (ENSELUG00000004071)
Spotted gar	MODERN SPECIES	671	ENSLOCG00000011540	ENSLOCG00000011544	pdlim1 (ENSLOCG00000011548)	SORBS1 (ENSLOCG00000011554)	ANXA7 (ENSLOCG00000011561)	PPP3CB (ENSLOCG00000011581)	ENSLOCG00000011598	CTNNA3 (ENSLOCG00000011612)	LRRTM3 (ENSLOCG00000011620)	CTNNA3 (ENSLOCG00000011625)	KAZALD1 (ENSLOCG00000011635) #30	tlx1 (ENSLOCG00000011642) #29	ENSLOCG00000011648	BTRC (ENSLOCG00000011652) #26	slc2a15a (ENSLOCG00000011671)	fgf8b (ENSLOCG00000011679) #22	fbxw4 (ENSLOCG00000011687) #23	dpcd (ENSLOCG00000011698) #24	poll (ENSLOCG00000011706) #25	wbp1la (ENSLOCG00000011721)	cyp17a1 (ENSLOCG00000011729)	borcs7 (ENSLOCG00000011739)	as3mt (ENSLOCG00000011748)	cnnm2a (ENSLOCG00000011756)	nt5c2b (ENSLOCG00000011770)	inab (ENSLOCG00000011782)	pcgf6 (ENSLOCG00000011792)	taf5 (ENSLOCG00000011799)	atp5md (ENSLOCG00000011809)	pdcd11 (ENSLOCG00000011818)	zgc:175214 (ENSLOCG00000011833)
Reedfish	MODERN SPECIES	10	HERC4 (ENSECRG00000007826)	cox5b2 (ENSECRG00000007801)	SIRT1 (ENSECRG00000007786)	DNAJC12 (ENSECRG00000007772)	ENSECRG00000007756	ENSECRG00000007746	ENSECRG00000007735	LRRTM3 (ENSECRG00000007728)	ENSECRG00000007719	ENSECRG00000007686	KAZALD1 (ENSECRG00000007668) #30	tlx1 (ENSECRG00000007650) #29	LBX1 (ENSECRG00000007641) #27	BTRC (ENSECRG00000007567) #26	slc2a15a (ENSECRG00000007530)	fgf8b (ENSECRG00000007513) #22	fbxw4 (ENSECRG00000007486) #23	dpcd (ENSECRG00000007473) #24	poll (ENSECRG00000007457) #25	wbp1la (ENSECRG00000007447)	cyp17a1 (ENSECRG00000007434)	borcs7 (ENSECRG00000007423)	as3mt (ENSECRG00000007410)	cnnm2a (ENSECRG00000007397)	ENSECRG00000007387	nt5c2b (ENSECRG00000007361)	inab (ENSECRG00000007342)	zgc:175214 (ENSECRG00000007332)	pxmp2 (ENSECRG00000007325)	ENSECRG00000007317	ENSECRG00000007314
Elephant shark	MODERN SPECIES	162																fgf8a (ENSCMIG00000001042) #22