Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00910000148800 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a Glires ANCESTRAL SPECIES 4 ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00910000148800 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a Rodentia ANCESTRAL SPECIES 5 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Rodentia_A ANCESTRAL SPECIES 4 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Hystricomorpha ANCESTRAL SPECIES 9 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Naked mole-rat female MODERN SPECIES 8 ENSHGLG00000010762 #7 ENSHGLG00000047428 #8 ENSHGLG00000013299 #9 ENSHGLG00000002824 #10 ENSHGLG00000019649 #11 ENSHGLG00000049232 #12 ENSHGLG00000000518 #13 ENSHGLG00000039977 #14 CTDSP2 (ENSHGLG00000005482) #15 AVIL (ENSHGLG00000006939) #16 TSFM (ENSHGLG00000035817) #17 EEF1AKMT3 (ENSHGLG00000014041) #18 METTL1 (ENSHGLG00000040341) #19 CYP27B1 (ENSHGLG00000018056) #20 MARCHF9 (ENSHGLG00000031879) #21 CDK4 (ENSHGLG00000034505) #22 TSPAN31 (ENSHGLG00000009305) #23 AGAP2 (ENSHGLG00000009759) #24 OS9 (ENSHGLG00000018868) #25 ENSHGLG00000032575 #26 B4GALNT1 (ENSHGLG00000016963) #27 ENSHGLG00000015674 #28 ENSHGLG00000044481 #29 ENSHGLG00000035780 #30 ARHGEF25 (ENSHGLG00000018169) #31 DTX3 (ENSHGLG00000033032) #32 PIP4K2C (ENSHGLG00000016024) #33 ENSHGLG00000043824 #34 DCTN2 (ENSHGLG00000013797) #35 ENSHGLG00000047970 #36 ENSHGLG00000041807 #37 Hystricomorpha_a ANCESTRAL SPECIES 7 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Guinea pig MODERN SPECIES 9 AVPR1A (ENSCPOG00000034144) PPM1H (ENSCPOG00000011289) MON2 (ENSCPOG00000032417) USP15 (ENSCPOG00000000584) TAFA2 (ENSCPOG00000035228) SLC16A7 (ENSCPOG00000010219) LRIG3 (ENSCPOG00000011502) #7 ATP23 (ENSCPOG00000039300) #14 CTDSP2 (ENSCPOG00000039281) #15 AVIL (ENSCPOG00000012226) #16 TSFM (ENSCPOG00000037732) #17 EEF1AKMT3 (ENSCPOG00000011497) #18 METTL1 (ENSCPOG00000000066) #19 CYP27B1 (ENSCPOG00000019603) #20 MARCHF9 (ENSCPOG00000002671) #21 CDK4 (ENSCPOG00000033131) #22 TSPAN31 (ENSCPOG00000011494) #23 AGAP2 (ENSCPOG00000022267) #24 OS9 (ENSCPOG00000002667) #25 B4GALNT1 (ENSCPOG00000003202) #27 ENSCPOG00000033620 #28 ARHGEF25 (ENSCPOG00000020097) #31 PIP4K2C (ENSCPOG00000022071) #33 KIF5A (ENSCPOG00000012882) DCTN2 (ENSCPOG00000012879) #35 MBD6 (ENSCPOG00000012873) #36 DDIT3 (ENSCPOG00000012871) MARS1 (ENSCPOG00000012866) ARHGAP9 (ENSCPOG00000014343) GLI1 (ENSCPOG00000005414) INHBE (ENSCPOG00000031115) Hystricomorpha_b ANCESTRAL SPECIES 13 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Long-tailed chinchilla MODERN SPECIES 165 AVPR1A (ENSCLAG00000012006) ENSCLAG00000011671 MON2 (ENSCLAG00000012321) USP15 (ENSCLAG00000015158) TAFA2 (ENSCLAG00000015199) SLC16A7 (ENSCLAG00000011812) LRIG3 (ENSCLAG00000010704) #7 ATP23 (ENSCLAG00000010629) #14 CTDSP2 (ENSCLAG00000015950) #15 AVIL (ENSCLAG00000009924) #16 TSFM (ENSCLAG00000009226) #17 EEF1AKMT3 (ENSCLAG00000012713) #18 METTL1 (ENSCLAG00000014968) #19 CYP27B1 (ENSCLAG00000013845) #20 TSPAN31 (ENSCLAG00000013511) #23 CDK4 (ENSCLAG00000012995) #22 MARCHF9 (ENSCLAG00000012609) #21 AGAP2 (ENSCLAG00000009332) #24 OS9 (ENSCLAG00000010151) #25 B4GALNT1 (ENSCLAG00000009160) #27 ENSCLAG00000011703 #28 ARHGEF25 (ENSCLAG00000010120) #31 DTX3 (ENSCLAG00000008560) #32 PIP4K2C (ENSCLAG00000012549) #33 KIF5A (ENSCLAG00000011917) DCTN2 (ENSCLAG00000010761) #35 MBD6 (ENSCLAG00000010083) #36 DDIT3 (ENSCLAG00000009376) MARS1 (ENSCLAG00000012164) ARHGAP9 (ENSCLAG00000015213) GLI1 (ENSCLAG00000010833) Degu DUPLICATION Degu DUPLICATION Degu MODERN SPECIES 327 ENSODEG00000002094 ENSODEG00000018777 ENSODEG00000018814 ENSODEG00000002068 ATP23 (ENSODEG00000002049) #14 ENSODEG00000002035 ENSODEG00000002015 #15 AVIL (ENSODEG00000001940) #16 TSFM (ENSODEG00000001882) #17 EEF1AKMT3 (ENSODEG00000001854) #18 METTL1 (ENSODEG00000001799) #19 CYP27B1 (ENSODEG00000001745) #20 MARCHF9 (ENSODEG00000001713) #21 ENSODEG00000001702 #22 TSPAN31 (ENSODEG00000001691) #23 AGAP2 (ENSODEG00000001675) #24 OS9 (ENSODEG00000001586) #25 B4GALNT1 (ENSODEG00000002156) #27 ENSODEG00000002108 #28 ARHGEF25 (ENSODEG00000002032) #31 DTX3 (ENSODEG00000001975) #32 PIP4K2C (ENSODEG00000001958) #33 KIF5A (ENSODEG00000001884) DCTN2 (ENSODEG00000001844) #35 ENSODEG00000001830 #36 ENSODEG00000001814 #36 DDIT3 (ENSODEG00000001801) MARS1 (ENSODEG00000001752) ARHGAP9 (ENSODEG00000001619) Degu MODERN SPECIES 134 ENSODEG00000019860 LIMA1 (ENSODEG00000010787) ENSODEG00000019715 ENSODEG00000019772 CERS5 (ENSODEG00000010040) GPD1 (ENSODEG00000011334) ENSODEG00000010634 SMARCD1 (ENSODEG00000010234) ASIC1 (ENSODEG00000009913) RACGAP1 (ENSODEG00000010159) AQP6 (ENSODEG00000009870) AQP5 (ENSODEG00000011095) AQP2 (ENSODEG00000010450) ENSODEG00000012970 FAIM2 (ENSODEG00000009571) ENSODEG00000011097 #22 ENSODEG00000010974 ENSODEG00000019768 BCDIN3D (ENSODEG00000009705) NCKAP5L (ENSODEG00000009975) ENSODEG00000019759 TMBIM6 (ENSODEG00000009820) ENSODEG00000010356 FMNL3 (ENSODEG00000011056) ENSODEG00000010201 ENSODEG00000010921 MCRS1 (ENSODEG00000010219) KCNH3 (ENSODEG00000010379) ENSODEG00000011171 ENSODEG00000012398 ENSODEG00000010211 Degu MODERN SPECIES 96 ENSODEG00000019613 ENSODEG00000013303 ENSODEG00000007791 RBM10 (ENSODEG00000008955) UBA1 (ENSODEG00000009310) CDK16 (ENSODEG00000009017) USP11 (ENSODEG00000010135) ENSODEG00000019537 ZNF157 (ENSODEG00000008760) ARAF (ENSODEG00000010748) SYN1 (ENSODEG00000010912) TIMP1 (ENSODEG00000011225) CFP (ENSODEG00000009141) UXT (ENSODEG00000009123) ZNF81 (ENSODEG00000009602) ENSODEG00000009466 #22 ZNF182 (ENSODEG00000010486) ENSODEG00000009058 ENSODEG00000009360 ENSODEG00000019635 FTSJ1 (ENSODEG00000009855) PORCN (ENSODEG00000008780) ENSODEG00000009371 TBC1D25 (ENSODEG00000009376) ENSODEG00000019740 ENSODEG00000009372 WDR13 (ENSODEG00000009758) ENSODEG00000009972 WAS (ENSODEG00000009320) SUV39H1 (ENSODEG00000010079) ENSODEG00000009872 Sciuridae ANCESTRAL SPECIES 14 ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00530000065303.b ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b.i #28 ENSGT01070000253775.a.d.b.j #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 14 ENSSVLG00005019352 MON2 (ENSSVLG00005017702) USP15 (ENSSVLG00005017376) ENSSVLG00005017329 TAFA2 (ENSSVLG00005017243) SLC16A7 (ENSSVLG00005017200) LRIG3 (ENSSVLG00005016786) #7 ATP23 (ENSSVLG00005016743) #14 CTDSP2 (ENSSVLG00005016687) #15 AVIL (ENSSVLG00005016505) #16 ENSSVLG00005016349 #17 EEF1AKMT3 (ENSSVLG00005016307) #18 METTL1 (ENSSVLG00005016268) #19 CYP27B1 (ENSSVLG00005016149) #20 MARCHF9 (ENSSVLG00005016118) #21 CDK4 (ENSSVLG00005015967) #22 TSPAN31 (ENSSVLG00005015825) #23 AGAP2 (ENSSVLG00005015393) #24 OS9 (ENSSVLG00005015079) #25 B4GALNT1 (ENSSVLG00005014897) #27 ENSSVLG00005014760 #28 ENSSVLG00005014611 #28 ARHGEF25 (ENSSVLG00005014310) #31 DTX3 (ENSSVLG00005014198) #32 PIP4K2C (ENSSVLG00005014089) #33 KIF5A (ENSSVLG00005013715) DCTN2 (ENSSVLG00005013297) #35 MBD6 (ENSSVLG00005013192) #36 DDIT3 (ENSSVLG00005013130) MARS1 (ENSSVLG00005012921) ARHGAP9 (ENSSVLG00005011907) Eurasian red squirrel MODERN SPECIES 16 CYB5R4 (ENSSVLG00005004926) ENSSVLG00005005005 ENSSVLG00005005021 SNAP91 (ENSSVLG00005005174) PRSS35 (ENSSVLG00005005648) ME1 (ENSSVLG00005005672) RWDD2A (ENSSVLG00005005733) PGM3 (ENSSVLG00005005768) DOP1A (ENSSVLG00005005866) UBE3D (ENSSVLG00005005911) ENSSVLG00005005937 TPBG (ENSSVLG00005005982) IBTK (ENSSVLG00005006031) ENSSVLG00005006118 TENT5A (ENSSVLG00005006145) ENSSVLG00005006230 #22 ENSSVLG00005006265 BCKDHB (ENSSVLG00005006295) TTK (ENSSVLG00005006338) ELOVL4 (ENSSVLG00005006524) SH3BGRL2 (ENSSVLG00005006564) LCA5 (ENSSVLG00005006608) HMGN3 (ENSSVLG00005006702) PHIP (ENSSVLG00005006782) IRAK1BP1 (ENSSVLG00005006952) ENSSVLG00005006976 MEI4 (ENSSVLG00005006998) ENSSVLG00005007055 HTR1B (ENSSVLG00005007066) ENSSVLG00005007097 ENSSVLG00005007111 Marmotini ANCESTRAL SPECIES 4 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00530000065303.b ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000004428.a.l.a.b ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b.i #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305.e ENSGT00550000075017 Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 3 ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000004428.a.l.a.b ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770.bb #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b.i #28 ENSGT01070000253775.a.d.b.j #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00860000136110 #34 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305.e ENSGT00550000075017 Squirrel MODERN SPECIES 246 SLC16A7 (ENSSTOG00000008048) LRIG3 (ENSSTOG00000002283) #7 ATP23 (ENSSTOG00000001187) #14 CTDSP2 (ENSSTOG00000023365) #15 AVIL (ENSSTOG00000001162) #16 EEF1AKMT3 (ENSSTOG00000024160) #18 TSFM (ENSSTOG00000001159) #17 METTL1 (ENSSTOG00000001154) #19 CYP27B1 (ENSSTOG00000001146) #20 ENSSTOG00000001142 #22 TSPAN31 (ENSSTOG00000001138) #23 MARCHF9 (ENSSTOG00000021963) #21 AGAP2 (ENSSTOG00000001113) #24 OS9 (ENSSTOG00000001100) #25 ENSSTOG00000031108 ENSSTOG00000014458 B4GALNT1 (ENSSTOG00000001087) #27 ENSSTOG00000020554 #28 ARHGEF25 (ENSSTOG00000001189) #31 DTX3 (ENSSTOG00000026285) #32 PIP4K2C (ENSSTOG00000001081) #33 KIF5A (ENSSTOG00000001164) DCTN2 (ENSSTOG00000001156) #35 ENSSTOG00000001143 #36 ENSSTOG00000019858 Arctic ground squirrel MODERN SPECIES 197 LRIG3 (ENSUPAG00010017739) #7 ENSUPAG00010017731 ENSUPAG00010017722 #14 CTDSP2 (ENSUPAG00010017709) #15 AVIL (ENSUPAG00010017677) #16 TSFM (ENSUPAG00010017664) #17 EEF1AKMT3 (ENSUPAG00010017654) #18 METTL1 (ENSUPAG00010017651) #19 CYP27B1 (ENSUPAG00010017630) #20 MARCHF9 (ENSUPAG00010017626) #21 ENSUPAG00010017617 #22 TSPAN31 (ENSUPAG00010017607) #23 AGAP2 (ENSUPAG00010017556) #24 OS9 (ENSUPAG00010017513) #25 B4GALNT1 (ENSUPAG00010017501) #27 ENSUPAG00010017441 #28 ARHGEF25 (ENSUPAG00010017411) #31 DTX3 (ENSUPAG00010017398) #32 PIP4K2C (ENSUPAG00010017376) #33 ENSUPAG00010017369 #34 KIF5A (ENSUPAG00010017316) DCTN2 (ENSUPAG00010017296) #35 MBD6 (ENSUPAG00010017279) #36 ENSUPAG00010017275 MARS1 (ENSUPAG00010017243) GLI1 (ENSUPAG00010017222) Marmotini_b ANCESTRAL SPECIES 7 ENSGT00940000160143 ENSGT00950000183100.A ENSGT00390000009328 ENSGT00390000011417.m ENSGT01100000263557.A.b.a.a.b ENSGT01100000263557.A.b.a.a.a.b ENSGT01100000263482.A.a.b ENSGT00940000156011 ENSGT00390000015052.i.b ENSGT00940000157894 ENSGT00500000044916 ENSGT00940000157653 ENSGT00940000160652 ENSGT01100000263545.a.b.d.a ENSGT00390000017671.b ENSGT00940000154770.cb #22 ENSGT00940000155044.B ENSGT00390000016353 ENSGT00950000182967.a.a.a.a.b.a.i.a.a ENSGT00950000182967.a.a.a.a.b.a.i.b ENSGT00950000182967.a.a.a.a.b.b.b ENSGT00950000182967.a.b ENSGT00950000182967.b ENSGT00390000017113 ENSGT00390000002349 ENSGT00390000015814 ENSGT00940000156482 ENSGT00940000155883.a.a ENSGT00940000161596 ENSGT00940000158564.d ENSGT00940000158564.c.a.d Arctic ground squirrel MODERN SPECIES 168 ENSUPAG00010003607 #22 CSNK1G3 (ENSUPAG00010003616) CEP120 (ENSUPAG00010003650) PRDM6 (ENSUPAG00010003694) PPIC (ENSUPAG00010003724) SNX24 (ENSUPAG00010003736) ENSUPAG00010003751 SNCAIP (ENSUPAG00010003776) ENSUPAG00010003843 ENSUPAG00010003847 LOX (ENSUPAG00010003850) SRFBP1 (ENSUPAG00010003868) ENSUPAG00010003888 FTMT (ENSUPAG00010003933) PRR16 (ENSUPAG00010003942) ENSUPAG00010003954 Squirrel MODERN SPECIES 75 DOK4 (ENSSTOG00000023553) ENSSTOG00000015150 COQ9 (ENSSTOG00000015145) ENSSTOG00000015141 CCL17 (ENSSTOG00000015140) CX3CL1 (ENSSTOG00000015132) CCL22 (ENSSTOG00000010260) PLLP (ENSSTOG00000010257) ENSSTOG00000010254 RSPRY1 (ENSSTOG00000010241) PSME3IP1 (ENSSTOG00000010232) CPNE2 (ENSSTOG00000010217) NLRC5 (ENSSTOG00000009773) CETP (ENSSTOG00000003544) HERPUD1 (ENSSTOG00000009526) ENSSTOG00000029244 #22 SLC12A3 (ENSSTOG00000024370) NUP93 (ENSSTOG00000004337) ENSSTOG00000032532 MT1M (ENSSTOG00000020323) ENSSTOG00000024849 MT3 (ENSSTOG00000025924) MT4 (ENSSTOG00000005917) BBS2 (ENSSTOG00000005878) OGFOD1 (ENSSTOG00000005854) NUDT21 (ENSSTOG00000005838) AMFR (ENSSTOG00000007758) GNAO1 (ENSSTOG00000007746) CES5A (ENSSTOG00000026351) ENSSTOG00000027692 ENSSTOG00000026768 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 11 USP15 (ENSMMMG00000010151) ENSMMMG00000010275 TAFA2 (ENSMMMG00000010293) ENSMMMG00000010307 SLC16A7 (ENSMMMG00000010337) LRIG3 (ENSMMMG00000010368) #7 ENSMMMG00000010406 ATP23 (ENSMMMG00000010425) #14 CTDSP2 (ENSMMMG00000010438) #15 AVIL (ENSMMMG00000010450) #16 TSFM (ENSMMMG00000010500) #17 EEF1AKMT3 (ENSMMMG00000010507) #18 METTL1 (ENSMMMG00000010517) #19 CYP27B1 (ENSMMMG00000010536) #20 MARCHF9 (ENSMMMG00000010562) #21 CDK4 (ENSMMMG00000010571) #22 TSPAN31 (ENSMMMG00000010594) #23 AGAP2 (ENSMMMG00000010604) #24 OS9 (ENSMMMG00000010642) #25 ENSMMMG00000010692 B4GALNT1 (ENSMMMG00000010698) #27 ENSMMMG00000010726 #28 ARHGEF25 (ENSMMMG00000010788) #31 DTX3 (ENSMMMG00000010875) #32 PIP4K2C (ENSMMMG00000010891) #33 KIF5A (ENSMMMG00000010904) ENSMMMG00000011019 #34 DCTN2 (ENSMMMG00000011027) #35 MBD6 (ENSMMMG00000011054) #36 ENSMMMG00000011091 ENSMMMG00000011094 Alpin marmot MODERN SPECIES 23 DOK4 (ENSMMMG00000010285) POLR2C (ENSMMMG00000010317) ENSMMMG00000010330 ENSMMMG00000010342 CCL17 (ENSMMMG00000010360) ENSMMMG00000010372 CCL22 (ENSMMMG00000010378) PLLP (ENSMMMG00000010387) ENSMMMG00000010394 RSPRY1 (ENSMMMG00000010401) PSME3IP1 (ENSMMMG00000010473) CPNE2 (ENSMMMG00000010490) NLRC5 (ENSMMMG00000010522) CETP (ENSMMMG00000010666) HERPUD1 (ENSMMMG00000010751) ENSMMMG00000010768 #22 SLC12A3 (ENSMMMG00000010780) NUP93 (ENSMMMG00000010845) MT1M (ENSMMMG00000010946) MT1B (ENSMMMG00000010953) ENSMMMG00000010962 ENSMMMG00000010970 MT4 (ENSMMMG00000010984) BBS2 (ENSMMMG00000011004) OGFOD1 (ENSMMMG00000011049) NUDT21 (ENSMMMG00000011230) AMFR (ENSMMMG00000011247) ENSMMMG00000011267 ENSMMMG00000011278 CES5A (ENSMMMG00000011355) ENSMMMG00000011414 Rodentia_B ANCESTRAL SPECIES 3 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Kangaroo rat MODERN SPECIES 322 ENSDORG00000025562 Slc16a7 (ENSDORG00000012107) ENSDORG00000028445 Lrig3 (ENSDORG00000010362) #7 ENSDORG00000028332 ENSDORG00000027513 ENSDORG00000024387 ENSDORG00000009511 #14 ENSDORG00000023572 #15 Avil (ENSDORG00000007274) #16 Tsfm (ENSDORG00000007272) #17 Eef1akmt3 (ENSDORG00000027331) #18 Mettl1 (ENSDORG00000007270) #19 Cyp27b1 (ENSDORG00000007269) #20 Marchf9 (ENSDORG00000007268) #21 Cdk4 (ENSDORG00000007267) #22 Tspan31 (ENSDORG00000007266) #23 Agap2 (ENSDORG00000007265) #24 Os9 (ENSDORG00000007263) #25 B4galnt1 (ENSDORG00000004816) #27 Slc26a10 (ENSDORG00000027396) #28 Arhgef25 (ENSDORG00000014405) #31 Dtx3 (ENSDORG00000000412) #32 Pip4k2c (ENSDORG00000026517) #33 Kif5a (ENSDORG00000007141) Dctn2 (ENSDORG00000007137) #35 Mbd6 (ENSDORG00000007136) #36 Ddit3 (ENSDORG00000007132) Mars1 (ENSDORG00000007127) Arhgap9 (ENSDORG00000007126) Gli1 (ENSDORG00000007124) Myomorpha ANCESTRAL SPECIES 2 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 42 Avpr1a (ENSJJAG00000017832) Ppm1h (ENSJJAG00000017676) Mon2 (ENSJJAG00000015619) ENSJJAG00000020160 Tafa2 (ENSJJAG00000018933) ENSJJAG00000012520 ENSJJAG00000011962 ENSJJAG00000003685 Lrig3 (ENSJJAG00000006798) #7 Ctdsp2 (ENSJJAG00000017246) #15 Avil (ENSJJAG00000016587) #16 Tsfm (ENSJJAG00000012907) #17 Eef1akmt3 (ENSJJAG00000012184) #18 Mettl1 (ENSJJAG00000014500) #19 Cyp27b1 (ENSJJAG00000016596) #20 ENSJJAG00000005635 #22 Tspan31 (ENSJJAG00000011792) #23 Marchf9 (ENSJJAG00000000800) #21 Agap2 (ENSJJAG00000012355) #24 Os9 (ENSJJAG00000011446) #25 ENSJJAG00000008739 B4galnt1 (ENSJJAG00000021764) #27 Slc26a10 (ENSJJAG00000000444) #28 Arhgef25 (ENSJJAG00000020641) #31 Dtx3 (ENSJJAG00000015820) #32 ENSJJAG00000016286 #33 Kif5a (ENSJJAG00000018332) Dctn2 (ENSJJAG00000005539) #35 ENSJJAG00000011275 ##36 Ddit3 (ENSJJAG00000011845) Mars1 (ENSJJAG00000018827) Lesser Egyptian jerboa MODERN SPECIES 143 ENSJJAG00000010768 Elac1 (ENSJJAG00000010672) Smad4 (ENSJJAG00000008893) Mex3c (ENSJJAG00000005241) ENSJJAG00000001355 #22 ENSJJAG00000000847 ENSJJAG00000013702 Dcc (ENSJJAG00000005791) ENSJJAG00000022704 Vmn2r118 (ENSJJAG00000007013) ENSJJAG00000022934 ENSJJAG00000022536 ENSJJAG00000010074 ENSJJAG00000009767 ENSJJAG00000009435 Acp5 (ENSJJAG00000002644) Elof1 (ENSJJAG00000001405) Cnn1 (ENSJJAG00000001001) ENSJJAG00000000325 Zfp653 (ENSJJAG00000000128) Muroidea ANCESTRAL SPECIES 5 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Upper Galilee mountains blind mole rat DUPLICATION Upper Galilee mountains blind mole rat MODERN SPECIES 1252 Ctdsp2 (ENSNGAG00000016774) #15 Avil (ENSNGAG00000022648) #16 Tsfm (ENSNGAG00000014356) #17 Eef1akmt3 (ENSNGAG00000015023) #18 Mettl1 (ENSNGAG00000013035) #19 Cyp27b1 (ENSNGAG00000016787) #20 Marchf9 (ENSNGAG00000018675) #21 Cdk4 (ENSNGAG00000011709) #22 ENSNGAG00000018815 #23 Agap2 (ENSNGAG00000019298) #24 Os9 (ENSNGAG00000001426) #25 B4galnt1 (ENSNGAG00000010764) #27 Slc26a10 (ENSNGAG00000007258) #28 Arhgef25 (ENSNGAG00000017593) #31 Dtx3 (ENSNGAG00000005639) #32 Pip4k2c (ENSNGAG00000018449) #33 Kif5a (ENSNGAG00000006172) Dctn2 (ENSNGAG00000020864) #35 Mbd6 (ENSNGAG00000004286) #36 ENSNGAG00000017151 Mars1 (ENSNGAG00000018824) Arhgap9 (ENSNGAG00000006996) Gli1 (ENSNGAG00000013962) Upper Galilee mountains blind mole rat MODERN SPECIES 1224 Prdm4 (ENSNGAG00000018627) Pwp1 (ENSNGAG00000015833) Abtb3 (ENSNGAG00000011417) Cry1 (ENSNGAG00000020732) Mterf2 (ENSNGAG00000000529) Tmem263 (ENSNGAG00000015885) Ric8b (ENSNGAG00000018867) Rfx4 (ENSNGAG00000000351) Polr3b (ENSNGAG00000011308) Tcp11l2 (ENSNGAG00000012830) Ckap4 (ENSNGAG00000015103) Nuak1 (ENSNGAG00000011987) 1500009L16Rik (ENSNGAG00000013967) ENSNGAG00000014686 Washc4 (ENSNGAG00000015936) ENSNGAG00000019266 #22 Aldh1l2 (ENSNGAG00000020174) Nopchap1 (ENSNGAG00000012316) Slc41a2 (ENSNGAG00000013889) ENSNGAG00000015399 Chst11 (ENSNGAG00000017327) ENSNGAG00000019222 Eid3 (ENSNGAG00000019100) Nfyb (ENSNGAG00000017224) Hcfc2 (ENSNGAG00000019076) Glt8d2 (ENSNGAG00000002040) Tdg (ENSNGAG00000000667) ENSNGAG00000013621 Hsp90b1 (ENSNGAG00000014447) Nt5dc3 (ENSNGAG00000018361) Stab2 (ENSNGAG00000001493) Muroidea_A ANCESTRAL SPECIES 22 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Murinae ANCESTRAL SPECIES 22 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a Mus ANCESTRAL SPECIES 23 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Mus_A ANCESTRAL SPECIES 11 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Ryukyu mouse MODERN SPECIES 1 Avpr1a (MGP_CAROLIEiJ_G0015863) Ppm1h (MGP_CAROLIEiJ_G0015864) Mon2 (MGP_CAROLIEiJ_G0015865) Usp15 (MGP_CAROLIEiJ_G0015866) Tafa2 (MGP_CAROLIEiJ_G0015867) Slc16a7 (MGP_CAROLIEiJ_G0015868) Lrig3 (MGP_CAROLIEiJ_G0015869) #7 Atp23 (MGP_CAROLIEiJ_G0015870) #14 Ctdsp2 (MGP_CAROLIEiJ_G0015871) #15 Avil (MGP_CAROLIEiJ_G0015872) #16 Tsfm (MGP_CAROLIEiJ_G0015873) #17 Eef1akmt3 (MGP_CAROLIEiJ_G0015874) #18 Mettl1 (MGP_CAROLIEiJ_G0015875) #19 Cyp27b1 (MGP_CAROLIEiJ_G0015876) #20 Marchf9 (MGP_CAROLIEiJ_G0015877) #21 Cdk4 (MGP_CAROLIEiJ_G0015878) #22 Tspan31 (MGP_CAROLIEiJ_G0015879) #23 Agap2 (MGP_CAROLIEiJ_G0015880) #24 Os9 (MGP_CAROLIEiJ_G0015881) #25 B4galnt1 (MGP_CAROLIEiJ_G0015882) #27 Slc26a10 (MGP_CAROLIEiJ_G0015883) #28 Arhgef25 (MGP_CAROLIEiJ_G0015884) #31 Dtx3 (MGP_CAROLIEiJ_G0015885) #32 Pip4k2c (MGP_CAROLIEiJ_G0015886) #33 Kif5a (MGP_CAROLIEiJ_G0015887) Dctn2 (MGP_CAROLIEiJ_G0015888) #35 Mbd6 (MGP_CAROLIEiJ_G0015889) #36 Ddit3 (MGP_CAROLIEiJ_G0015890) Mars1 (MGP_CAROLIEiJ_G0015891) MGP_CAROLIEiJ_G0015892 Gli1 (MGP_CAROLIEiJ_G0015893) Mus_B ANCESTRAL SPECIES 10 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Mouse MODERN SPECIES 1 Avpr1a (ENSMUSG00000020123) Ppm1h (ENSMUSG00000034613) Mon2 (ENSMUSG00000034602) Usp15 (ENSMUSG00000020124) Tafa2 (ENSMUSG00000044071) Slc16a7 (ENSMUSG00000020102) Lrig3 (ENSMUSG00000020105) #7 Atp23 (ENSMUSG00000025436) #14 Ctdsp2 (ENSMUSG00000078429) #15 Avil (ENSMUSG00000025432) #16 Tsfm (ENSMUSG00000040521) #17 Eef1akmt3 (ENSMUSG00000080115) #18 Mettl1 (ENSMUSG00000006732) #19 Cyp27b1 (ENSMUSG00000006724) #20 Marchf9 (ENSMUSG00000040502) #21 Cdk4 (ENSMUSG00000006728) #22 Tspan31 (ENSMUSG00000006736) #23 Agap2 (ENSMUSG00000025422) #24 Os9 (ENSMUSG00000040462) #25 B4galnt1 (ENSMUSG00000006731) #27 Slc26a10 (ENSMUSG00000040441) #28 Arhgef25 (ENSMUSG00000019467) #31 Dtx3 (ENSMUSG00000040415) #32 Pip4k2c (ENSMUSG00000025417) #33 Kif5a (ENSMUSG00000074657) Dctn2 (ENSMUSG00000025410) #35 Mbd6 (ENSMUSG00000025409) #36 Ddit3 (ENSMUSG00000025408) Ddit3 (ENSMUSG00000116429) Mars1 (ENSMUSG00000040354) Arhgap9 (ENSMUSG00000040345) Mus_C ANCESTRAL SPECIES 7 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Steppe mouse MODERN SPECIES 2158 Ctdsp2 (ENSMSIG00000019304) #15 Avil (ENSMSIG00000019200) #16 Tsfm (ENSMSIG00000019150) #17 Eef1akmt3 (ENSMSIG00000019127) #18 ENSMSIG00000019094 #19 Cyp27b1 (ENSMSIG00000019069) #20 Marchf9 (ENSMSIG00000019050) #21 Cdk4 (ENSMSIG00000019006) #22 Tspan31 (ENSMSIG00000018984) #23 Agap2 (ENSMSIG00000018800) #24 Os9 (ENSMSIG00000018740) #25 spretus MODERN SPECIES 1 Avpr1a (MGP_SPRETEiJ_G0016688) Ppm1h (MGP_SPRETEiJ_G0016690) Mon2 (MGP_SPRETEiJ_G0016691) Usp15 (MGP_SPRETEiJ_G0016692) Tafa2 (MGP_SPRETEiJ_G0016693) Slc16a7 (MGP_SPRETEiJ_G0016694) Lrig3 (MGP_SPRETEiJ_G0016695) #7 Atp23 (MGP_SPRETEiJ_G0016696) #14 Ctdsp2 (MGP_SPRETEiJ_G0016697) #15 Avil (MGP_SPRETEiJ_G0016698) #16 Tsfm (MGP_SPRETEiJ_G0016699) #17 Eef1akmt3 (MGP_SPRETEiJ_G0016700) #18 Mettl1 (MGP_SPRETEiJ_G0016701) #19 Cyp27b1 (MGP_SPRETEiJ_G0016702) #20 Marchf9 (MGP_SPRETEiJ_G0016703) #21 Cdk4 (MGP_SPRETEiJ_G0016704) #22 Tspan31 (MGP_SPRETEiJ_G0016705) #23 Agap2 (MGP_SPRETEiJ_G0016706) #24 Os9 (MGP_SPRETEiJ_G0016707) #25 B4galnt1 (MGP_SPRETEiJ_G0016708) #27 Slc26a10 (MGP_SPRETEiJ_G0016709) #28 Arhgef25 (MGP_SPRETEiJ_G0016710) #31 Dtx3 (MGP_SPRETEiJ_G0016711) #32 Pip4k2c (MGP_SPRETEiJ_G0016712) #33 Kif5a (MGP_SPRETEiJ_G0016713) Dctn2 (MGP_SPRETEiJ_G0016714) #35 Mbd6 (MGP_SPRETEiJ_G0016715) #36 Ddit3 (MGP_SPRETEiJ_G0016716) Mars1 (MGP_SPRETEiJ_G0016717) MGP_SPRETEiJ_G0016718 Gli1 (MGP_SPRETEiJ_G0016719) Shrew mouse MODERN SPECIES 22 Avpr1a (MGP_PahariEiJ_G0031222) Ppm1h (MGP_PahariEiJ_G0031221) Mon2 (MGP_PahariEiJ_G0031220) Usp15 (MGP_PahariEiJ_G0031219) Tafa2 (MGP_PahariEiJ_G0031218) Slc16a7 (MGP_PahariEiJ_G0031217) Lrig3 (MGP_PahariEiJ_G0031216) #7 Atp23 (MGP_PahariEiJ_G0031215) #14 Ctdsp2 (MGP_PahariEiJ_G0031214) #15 Avil (MGP_PahariEiJ_G0031213) #16 Tsfm (MGP_PahariEiJ_G0031212) #17 Eef1akmt3 (MGP_PahariEiJ_G0031211) #18 Mettl1 (MGP_PahariEiJ_G0031210) #19 Cyp27b1 (MGP_PahariEiJ_G0031209) #20 Marchf9 (MGP_PahariEiJ_G0031208) #21 Cdk4 (MGP_PahariEiJ_G0031207) #22 Tspan31 (MGP_PahariEiJ_G0031206) #23 Agap2 (MGP_PahariEiJ_G0031205) #24 Os9 (MGP_PahariEiJ_G0031204) #25 B4galnt1 (MGP_PahariEiJ_G0031203) #27 Slc26a10 (MGP_PahariEiJ_G0031202) #28 Arhgef25 (MGP_PahariEiJ_G0031201) #31 Dtx3 (MGP_PahariEiJ_G0031200) #32 Pip4k2c (MGP_PahariEiJ_G0031199) #33 Kif5a (MGP_PahariEiJ_G0031198) Dctn2 (MGP_PahariEiJ_G0031197) #35 Mbd6 (MGP_PahariEiJ_G0031196) #36 Ddit3 (MGP_PahariEiJ_G0031195) Mars1 (MGP_PahariEiJ_G0031194) MGP_PahariEiJ_G0031193 Gli1 (MGP_PahariEiJ_G0031192) Rat MODERN SPECIES 17 Usp15 (ENSRNOG00000023202) Tafa2 (ENSRNOG00000064852) LOC500845 (ENSRNOG00000029354) Slc16a7 (ENSRNOG00000007839) ENSRNOG00000031425 Lrig3 (ENSRNOG00000007654) #7 RGD1564306 (ENSRNOG00000032335) Atp23 (ENSRNOG00000045629) #14 Ctdsp2 (ENSRNOG00000068220) #15 Avil (ENSRNOG00000050419) #16 Tsfm (ENSRNOG00000048843) #17 Eef1akmt3 (ENSRNOG00000047631) #18 Mettl1 (ENSRNOG00000047895) #19 Cyp27b1 (ENSRNOG00000046214) #20 AABR07057423.1 (ENSRNOG00000046245) #21 Cdk4 (ENSRNOG00000025602) #22 Tspan31 (ENSRNOG00000025592) #23 Agap2 (ENSRNOG00000025584) #24 Os9 (ENSRNOG00000025570) #25 RGD1565117 (ENSRNOG00000033161) B4galnt1 (ENSRNOG00000004839) #27 Slc26a10 (ENSRNOG00000029465) #28 Arhgef25 (ENSRNOG00000005034) #31 Dtx3 (ENSRNOG00000005129) #32 Pip4k2c (ENSRNOG00000005138) #33 Kif5a (ENSRNOG00000005299) ENSRNOG00000069110 #34 Dctn2 (ENSRNOG00000025481) #35 Mbd6 (ENSRNOG00000006209) #36 Ddit3 (ENSRNOG00000006789) Mars1 (ENSRNOG00000025459) Cricetidae DUPLICATION Cricetidae DUPLICATION Cricetidae ANCESTRAL SPECIES 21 ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770.w.b #22 ENSGT00940000154770.w.a #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Cricetinae ANCESTRAL SPECIES 22 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770.w.a #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Chinese hamster chok1gshd MODERN SPECIES 352 Mon2 (ENSCGRG00001014349) Usp15 (ENSCGRG00001000393) Tafa2 (ENSCGRG00001014019) ENSCGRG00001021690 Slc16a7 (ENSCGRG00001016918) Lrig3 (ENSCGRG00001012777) #7 ENSCGRG00001007637 Atp23 (ENSCGRG00001013234) #14 Ctdsp2 (ENSCGRG00001005659) #15 Avil (ENSCGRG00001012627) #16 TSFM (ENSCGRG00001023000) #17 Eef1akmt3 (ENSCGRG00001022247) #18 Mettl1 (ENSCGRG00001017652) #19 Cyp27b1 (ENSCGRG00001021985) #20 Marchf9 (ENSCGRG00001012220) #21 ENSCGRG00001014084 #22 Tspan31 (ENSCGRG00001020219) #23 Agap2 (ENSCGRG00001013372) #24 Os9 (ENSCGRG00001020659) #25 B4galnt1 (ENSCGRG00001003379) #27 Slc26a10 (ENSCGRG00001023769) #28 Arhgef25 (ENSCGRG00001022612) #31 Dtx3 (ENSCGRG00001000914) #32 Pip4k2c (ENSCGRG00001011872) #33 Kif5a (ENSCGRG00001017636) Dctn2 (ENSCGRG00001015007) #35 Mbd6 (ENSCGRG00001017943) #36 Ddit3 (ENSCGRG00001015590) Mars1 (ENSCGRG00001019238) Arhgap9 (ENSCGRG00001021134) Gli1 (ENSCGRG00001019686) Cricetidae_B ANCESTRAL SPECIES 35 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770.w.a #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 ENSGT00550000075017 Prairie vole MODERN SPECIES 10 ENSMOCG00000008797 Ppm1h (ENSMOCG00000013614) Mon2 (ENSMOCG00000014757) Usp15 (ENSMOCG00000010029) Tafa2 (ENSMOCG00000002084) Slc16a7 (ENSMOCG00000013757) Lrig3 (ENSMOCG00000015216) #7 Atp23 (ENSMOCG00000007960) #14 Ctdsp2 (ENSMOCG00000020720) #15 Avil (ENSMOCG00000012599) #16 Tsfm (ENSMOCG00000006104) #17 Eef1akmt3 (ENSMOCG00000011230) #18 Mettl1 (ENSMOCG00000020233) #19 Cyp27b1 (ENSMOCG00000018353) #20 Marchf9 (ENSMOCG00000002354) #21 ENSMOCG00000008699 #22 Tspan31 (ENSMOCG00000012333) #23 Agap2 (ENSMOCG00000015636) #24 Os9 (ENSMOCG00000004512) #25 B4galnt1 (ENSMOCG00000020319) #27 Slc26a10 (ENSMOCG00000003649) #28 Arhgef25 (ENSMOCG00000013132) #31 Dtx3 (ENSMOCG00000010598) #32 Pip4k2c (ENSMOCG00000014405) #33 Kif5a (ENSMOCG00000004701) Dctn2 (ENSMOCG00000000594) #35 Mbd6 (ENSMOCG00000012812) #36 Ddit3 (ENSMOCG00000002751) Mars1 (ENSMOCG00000010941) Arhgap9 (ENSMOCG00000002227) Gli1 (ENSMOCG00000015523) Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 13 ENSPEMG00000021831 ENSPEMG00000021612 ENSPEMG00000029990 Kcnq5 (ENSPEMG00000017858) ENSPEMG00000031021 ENSPEMG00000027863 Ogfrl1 (ENSPEMG00000025100) B3gat2 (ENSPEMG00000018363) ENSPEMG00000015532 Sdhaf4 (ENSPEMG00000026560) Fam135a (ENSPEMG00000020097) Col9a1 (ENSPEMG00000019296) Lmbrd1 (ENSPEMG00000007299) ENSPEMG00000018680 ENSPEMG00000025443 #22 ENSPEMG00000027987 #22 Phf3 (ENSPEMG00000029836) Ptp4a1 (ENSPEMG00000028379) ENSPEMG00000027646 ENSPEMG00000001468 Lgsn (ENSPEMG00000008615) Khdrbs2 (ENSPEMG00000011247) Prim2 (ENSPEMG00000026079) Rab23 (ENSPEMG00000023271) Bag2 (ENSPEMG00000022944) Zfp451 (ENSPEMG00000023654) Bend6 (ENSPEMG00000016987) Dst (ENSPEMG00000028075) Ccdc115 (ENSPEMG00000020161) ENSPEMG00000030399 Ptpn18 (ENSPEMG00000020123) Northern American deer mouse MODERN SPECIES 13 ENSPEMG00000030274 ENSPEMG00000021831 ENSPEMG00000021612 ENSPEMG00000029990 Kcnq5 (ENSPEMG00000017858) ENSPEMG00000031021 ENSPEMG00000027863 Ogfrl1 (ENSPEMG00000025100) B3gat2 (ENSPEMG00000018363) ENSPEMG00000015532 Sdhaf4 (ENSPEMG00000026560) Fam135a (ENSPEMG00000020097) Col9a1 (ENSPEMG00000019296) Lmbrd1 (ENSPEMG00000007299) ENSPEMG00000018680 ENSPEMG00000025443 #22 ENSPEMG00000027987 #22 Phf3 (ENSPEMG00000029836) Ptp4a1 (ENSPEMG00000028379) ENSPEMG00000027646 ENSPEMG00000001468 Lgsn (ENSPEMG00000008615) Khdrbs2 (ENSPEMG00000011247) Prim2 (ENSPEMG00000026079) Rab23 (ENSPEMG00000023271) Bag2 (ENSPEMG00000022944) Zfp451 (ENSPEMG00000023654) Bend6 (ENSPEMG00000016987) Dst (ENSPEMG00000028075) Ccdc115 (ENSPEMG00000020161) ENSPEMG00000030399 Cricetidae ANCESTRAL SPECIES 21 ENSGT01050000244882.a.a.a.a ENSGT00940000160095 ENSGT00390000013286 ENSGT00940000154932.A ENSGT00940000161214 ENSGT00940000157309 ENSGT00940000157098 #7 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770.w.b #22 ENSGT00940000154770.w.a #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00860000136110 #34 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT01090000261933 ENSGT00390000006305 Cricetinae ANCESTRAL SPECIES ENSGT00940000154770.w.b #22 Golden Hamster MODERN SPECIES 710 Kics2 (ENSMAUG00000001214) Srgap1 (ENSMAUG00000016602) ENSMAUG00000004495 ENSMAUG00000001518 ENSMAUG00000000577 ENSMAUG00000019840 Tafa2 (ENSMAUG00000016370) ENSMAUG00000014402 Slc16a7 (ENSMAUG00000013959) ENSMAUG00000012985 #7 ENSMAUG00000016897 #15 Avil (ENSMAUG00000012739) #16 Tsfm (ENSMAUG00000011705) #17 Eef1akmt3 (ENSMAUG00000010832) #18 Cyp27b1 (ENSMAUG00000008020) #20 Cdk4 (ENSMAUG00000010648) #22 Marchf9 (ENSMAUG00000010248) #21 Agap2 (ENSMAUG00000007077) #24 Os9 (ENSMAUG00000019379) #25 ENSMAUG00000017551 #27 Arhgef25 (ENSMAUG00000016660) #31 Dtx3 (ENSMAUG00000019649) #32 Pip4k2c (ENSMAUG00000019443) #33 Kif5a (ENSMAUG00000013563) Dctn2 (ENSMAUG00000013335) #35 Mbd6 (ENSMAUG00000010881) #36 Mars1 (ENSMAUG00000011482) Arhgap9 (ENSMAUG00000013068) Gli1 (ENSMAUG00000010937) Inhbe (ENSMAUG00000008071) Inhbc (ENSMAUG00000013085) Chinese hamster chok1gshd MODERN SPECIES 33 Pfn5 (ENSCGRG00001010921) Asb12 (ENSCGRG00001014869) Amer1 (ENSCGRG00001010468) Arhgef9 (ENSCGRG00001019472) Spin4 (ENSCGRG00001002178) ENSCGRG00001008111 ENSCGRG00001011077 Gspt2 (ENSCGRG00001002796) Maged1 (ENSCGRG00001010048) ENSCGRG00001022089 #22 Apoo (ENSCGRG00001001608) ENSCGRG00001001188 ENSCGRG00001000633 Klhl15 (ENSCGRG00001012393) Eif2s3x (ENSCGRG00001023286) Zfx (ENSCGRG00001017582) ENSCGRG00001003431 AU015836 (ENSCGRG00001020701) Pdk3 (ENSCGRG00001023514) Pcyt1b (ENSCGRG00001014447) Pola1 (ENSCGRG00001013675) Arx (ENSCGRG00001017219) ENSCGRG00001012438 ENSCGRG00001002948 ENSCGRG00001013233 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000154770.w.b #22 Northern American deer mouse MODERN SPECIES 9 Avpr1a (ENSPEMG00000027000) Ppm1h (ENSPEMG00000000159) Mon2 (ENSPEMG00000016912) ENSPEMG00000014279 Tafa2 (ENSPEMG00000012757) Slc16a7 (ENSPEMG00000011696) Lrig3 (ENSPEMG00000008787) #7 Atp23 (ENSPEMG00000007916) #14 Ctdsp2 (ENSPEMG00000029308) #15 Avil (ENSPEMG00000003557) #16 Tsfm (ENSPEMG00000000414) #17 Eef1akmt3 (ENSPEMG00000027288) #18 Mettl1 (ENSPEMG00000030468) #19 Cyp27b1 (ENSPEMG00000016226) #20 Marchf9 (ENSPEMG00000017943) #21 ENSPEMG00000015354 #22 Tspan31 (ENSPEMG00000000054) #23 Agap2 (ENSPEMG00000017050) #24 Os9 (ENSPEMG00000015919) #25 B4galnt1 (ENSPEMG00000015244) #27 ENSPEMG00000025878 #28 ENSPEMG00000013550 #28 Arhgef25 (ENSPEMG00000011625) #31 Dtx3 (ENSPEMG00000010078) #32 Pip4k2c (ENSPEMG00000009463) #33 Kif5a (ENSPEMG00000007193) ENSPEMG00000024880 #34 Dctn2 (ENSPEMG00000003096) #35 Mbd6 (ENSPEMG00000000952) #36 Ddit3 (ENSPEMG00000025876) Ddit3 (ENSPEMG00000000565) Prairie vole MODERN SPECIES 129 Klrk1 (ENSMOCG00000009655) Klrd1 (ENSMOCG00000019998) Klre1 (ENSMOCG00000014157) Gabarapl1 (ENSMOCG00000006724) Tmem52b (ENSMOCG00000006658) Olr1 (ENSMOCG00000001827) Clec7a (ENSMOCG00000005849) Clec1a (ENSMOCG00000015147) Clec9a (ENSMOCG00000006480) Clec1b (ENSMOCG00000006834) Clec12b (ENSMOCG00000011279) Clec12a (ENSMOCG00000017710) Clec2m (ENSMOCG00000003185) Cd69 (ENSMOCG00000002536) ENSMOCG00000003015 ENSMOCG00000017323 #22 ENSMOCG00000002174 ENSMOCG00000007038 ENSMOCG00000002625 ENSMOCG00000004183 ENSMOCG00000000226 ENSMOCG00000016794 ENSMOCG00000006512 Cricetidae ANCESTRAL SPECIES ENSGT00940000154770.x #22 Cricetidae_B ANCESTRAL SPECIES ENSGT00940000154770.x #22 Northern American deer mouse MODERN SPECIES 11 Gpr63 (ENSPEMG00000026056) Ndufaf4 (ENSPEMG00000031258) Klhl32 (ENSPEMG00000006572) Mms22l (ENSPEMG00000008908) Pou3f2 (ENSPEMG00000002130) Fbxl4 (ENSPEMG00000015634) Faxc (ENSPEMG00000000141) Coq3 (ENSPEMG00000002775) Pnisr (ENSPEMG00000003524) ENSPEMG00000030192 Usp45 (ENSPEMG00000006676) Tstd3 (ENSPEMG00000011487) Ccnc (ENSPEMG00000015952) Prdm13 (ENSPEMG00000000098) ENSPEMG00000029781 ENSPEMG00000006880 #22 Nkain3 (ENSPEMG00000000608) Sntg1 (ENSPEMG00000008856) Pcmtd1 (ENSPEMG00000027595) ENSPEMG00000009884 ENSPEMG00000029331 St18 (ENSPEMG00000021799) ENSPEMG00000025981 ENSPEMG00000024780 Alkal1 (ENSPEMG00000022797) Rb1cc1 (ENSPEMG00000022179) ENSPEMG00000027986 Npbwr1 (ENSPEMG00000001350) ENSPEMG00000004044 Oprk1 (ENSPEMG00000030744) ENSPEMG00000024522 Cricetinae ANCESTRAL SPECIES ENSGT00940000154770.x #22 Chinese hamster chok1gshd MODERN SPECIES 76 Aff1 (ENSCGRG00001015769) Klhl8 (ENSCGRG00001018481) ENSCGRG00001023510 Hsd17b13 (ENSCGRG00001005914) Hsd17b11 (ENSCGRG00001007844) Nudt9 (ENSCGRG00001011849) Gm17660 (ENSCGRG00001013296) Sparcl1 (ENSCGRG00001009590) Dmp1 (ENSCGRG00001013845) Ibsp (ENSCGRG00001016273) Mepe (ENSCGRG00001019599) Dspp (ENSCGRG00001007381) Spp1 (ENSCGRG00001012247) Pkd2 (ENSCGRG00001016312) Thoc2l (ENSCGRG00001009811) ENSCGRG00001023071 #22 Abcg3 (ENSCGRG00001004887) ENSCGRG00001000571 Kctd6 (ENSCGRG00001009848) Acox2 (ENSCGRG00001013444) Fam107a (ENSCGRG00001022141) Fam3d (ENSCGRG00001000168) ENSCGRG00001016036 Cfap20dc (ENSCGRG00001017819) ENSCGRG00001011021 ENSCGRG00001008920 Fhit (ENSCGRG00001000886) ENSCGRG00001023304 3830406C13Rik (ENSCGRG00001009640) Fezf2 (ENSCGRG00001011113) Cadps (ENSCGRG00001018622) Lagomorpha ANCESTRAL SPECIES 87 ENSGT00390000010948 #14 ENSGT01040000240451.a.b.a #15 ENSGT00910000148800 ENSGT00940000159587 #16 ENSGT00390000016293 #17 ENSGT00940000161297 #18 ENSGT00390000017840 #19 ENSGT00950000182905.a.a.b #20 ENSGT00940000158208 #21 ENSGT00940000154770 #22 ENSGT00940000160351 #23 ENSGT00940000158956 #24 ENSGT00530000063603.A #25 ENSGT00390000006679.a #27 ENSGT01070000253775.a.d.b #28 ENSGT00940000160422 #31 ENSGT00940000161404 #32 ENSGT00940000156890.a.a #33 ENSGT00940000159439 ENSGT00390000003427 #35 ENSGT00530000064137.a.a #36 ENSGT00390000006305 ENSGT00550000075017 ENSGT00950000182860.a.b.a ENSGT00940000160235 Rabbit MODERN SPECIES 447 ENSOCUG00000032733 SLC16A7 (ENSOCUG00000003052) ENSOCUG00000005527 ENSOCUG00000031613 LRIG3 (ENSOCUG00000015598) #7 ENSOCUG00000036349 ENSOCUG00000031070 ENSOCUG00000002411 ATP23 (ENSOCUG00000001951) #14 CTDSP2 (ENSOCUG00000012533) #15 ENSOCUG00000037733 AVIL (ENSOCUG00000012517) #16 TSFM (ENSOCUG00000012512) #17 METTL1 (ENSOCUG00000012498) #19 CYP27B1 (ENSOCUG00000012486) #20 CDK4 (ENSOCUG00000012474) #22 TSPAN31 (ENSOCUG00000012465) #23 AGAP2 (ENSOCUG00000001304) #24 OS9 (ENSOCUG00000024515) #25 B4GALNT1 (ENSOCUG00000014121) #27 ENSOCUG00000014113 #28 DTX3 (ENSOCUG00000000915) #32 PIP4K2C (ENSOCUG00000000916) #33 ENSOCUG00000031292 KIF5A (ENSOCUG00000011273) DCTN2 (ENSOCUG00000011262) #35 MBD6 (ENSOCUG00000011255) #36 DDIT3 (ENSOCUG00000023877) MARS1 (ENSOCUG00000007373) ARHGAP9 (ENSOCUG00000022807) GLI1 (ENSOCUG00000011128) Pika MODERN SPECIES 3584 CTDSP2 (ENSOPRG00000006705) #15 AVIL (ENSOPRG00000006677) #16 TSFM (ENSOPRG00000006670) #17 EEF1AKMT3 (ENSOPRG00000006664) #18 METTL1 (ENSOPRG00000006660) #19 CYP27B1 (ENSOPRG00000006649) #20 MARCHF9 (ENSOPRG00000006640) #21 CDK4 (ENSOPRG00000006631) #22 TSPAN31 (ENSOPRG00000006622) #23 OS9 (ENSOPRG00000006604) #25 B4GALNT1 (ENSOPRG00000006593) #27 ARHGEF25 (ENSOPRG00000006581) #31 DTX3 (ENSOPRG00000006576) #32 PIP4K2C (ENSOPRG00000006570) #33 KIF5A (ENSOPRG00000006555) DCTN2 (ENSOPRG00000006544) #35 MBD6 (ENSOPRG00000006533) #36 DDIT3 (ENSOPRG00000006529) MARS1 (ENSOPRG00000006518) ARHGAP9 (ENSOPRG00000006501) GLI1 (ENSOPRG00000006483) INHBE (ENSOPRG00000006480) INHBC (ENSOPRG00000006476) Tree shrew MODERN SPECIES 1624 CTDSP2 (ENSTBEG00000012421) #15 AVIL (ENSTBEG00000011791) #16 TSFM (ENSTBEG00000011603) #17 METTL1 (ENSTBEG00000011522) #19 CYP27B1 (ENSTBEG00000011034) #20 MARCHF9 (ENSTBEG00000010865) #21 CDK4 (ENSTBEG00000010793) #22 TSPAN31 (ENSTBEG00000010664) #23 ENSTBEG00000009692 #24 OS9 (ENSTBEG00000017487) #25