Tetrapoda	ANCESTRAL SPECIES	26	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00530000063825.B	ENSGT00940000158956 #24	ENSGT00940000164002	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000160422 #28	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Amniota	ANCESTRAL SPECIES	30	ENSGT00390000010077	ENSGT00390000000685	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Mammalia	ANCESTRAL SPECIES	31								ENSGT00900000143830	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Theria	ANCESTRAL SPECIES	2	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Eutheria	ANCESTRAL SPECIES	1	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Primates	ANCESTRAL SPECIES	6	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000160095	ENSGT00940000153112.D.n.a.a.a.a.b	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000160095	ENSGT00940000153112.D.n.a.a.a.a.b	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000160095	ENSGT00940000153112.D.n.a.a.a.a.b	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00940000156335.p	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Olive baboon	MODERN SPECIES	19	USP15 (ENSPANG00000011242) #7	ENSPANG00000047700 #8	TAFA2 (ENSPANG00000004848) #9	ENSPANG00000050883 #10	SLC16A7 (ENSPANG00000022960) #11	LRIG3 (ENSPANG00000004953) #12	ENSPANG00000048517 #13	ATP23 (ENSPANG00000032045) #14	CTDSP2 (ENSPANG00000002790) #15	AVIL (ENSPANG00000023176) #16	TSFM (ENSPANG00000007866) #17	EEF1AKMT3 (ENSPANG00000012537) #18	METTL1 (ENSPANG00000010683) #19	CYP27B1 (ENSPANG00000007190) #20	MARCHF9 (ENSPANG00000022647) #21	CDK4 (ENSPANG00000018113) #22	TSPAN31 (ENSPANG00000009254) #23	AGAP2 (ENSPANG00000012661) #24	OS9 (ENSPANG00000004849) #25	B4GALNT1 (ENSPANG00000002379) #26	ENSPANG00000013233 #27	ARHGEF25 (ENSPANG00000024375) #28	DTX3 (ENSPANG00000010684) #29	ENSPANG00000011243 #30	KIF5A (ENSPANG00000024424) #31	DCTN2 (ENSPANG00000004647) #32	MBD6 (ENSPANG00000017043) #33	DDIT3 (ENSPANG00000024001) #34	MARS1 (ENSPANG00000009140) #35	ARHGAP9 (ENSPANG00000007867) #36	GLI1 (ENSPANG00000017044) #37
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00940000156335.p	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Drill	MODERN SPECIES	983							ATP23 (ENSMLEG00000036257) #14	ENSMLEG00000043759	CTDSP2 (ENSMLEG00000036759) #15	AVIL (ENSMLEG00000031472) #16	TSFM (ENSMLEG00000029811) #17	EEF1AKMT3 (ENSMLEG00000034107) #18	METTL1 (ENSMLEG00000032975) #19	CYP27B1 (ENSMLEG00000041813) #20	MARCHF9 (ENSMLEG00000042835) #21	CDK4 (ENSMLEG00000037320) #22	TSPAN31 (ENSMLEG00000038898) #23	AGAP2 (ENSMLEG00000044212) #24	OS9 (ENSMLEG00000011596) #25	B4GALNT1 (ENSMLEG00000037108) #26	ENSMLEG00000021034	ENSMLEG00000043030 #27	ARHGEF25 (ENSMLEG00000037870) #28	DTX3 (ENSMLEG00000041563) #29	PIP4K2C (ENSMLEG00000035988) #30	ENSMLEG00000034185	ENSMLEG00000034126	KIF5A (ENSMLEG00000032609) #31	DCTN2 (ENSMLEG00000038960) #32	MBD6 (ENSMLEG00000030542) #33	DDIT3 (ENSMLEG00000034327) #34
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	117			TAFA2 (ENSCATG00000042017) #9	SLC16A7 (ENSCATG00000022804) #11	LRIG3 (ENSCATG00000045105) #12	ENSCATG00000033331	ENSCATG00000034743	ATP23 (ENSCATG00000034329) #14	CTDSP2 (ENSCATG00000029469) #15	AVIL (ENSCATG00000043298) #16	TSFM (ENSCATG00000016867) #17	EEF1AKMT3 (ENSCATG00000033262) #18	METTL1 (ENSCATG00000036300) #19	CYP27B1 (ENSCATG00000042441) #20	MARCHF9 (ENSCATG00000044373) #21	CDK4 (ENSCATG00000017600) #22	TSPAN31 (ENSCATG00000043074) #23	AGAP2 (ENSCATG00000012954) #24	OS9 (ENSCATG00000043112) #25	B4GALNT1 (ENSCATG00000042850) #26	ENSCATG00000033258 #27	ENSCATG00000022770	ARHGEF25 (ENSCATG00000043971) #28	DTX3 (ENSCATG00000031460) #29	PIP4K2C (ENSCATG00000037606) #30	ENSCATG00000038958	KIF5A (ENSCATG00000038773) #31	ENSCATG00000034874	DCTN2 (ENSCATG00000041971) #32	MBD6 (ENSCATG00000043813) #33	DDIT3 (ENSCATG00000026856) #34
Sooty mangabey	MODERN SPECIES	510															ENSCATG00000030075	ENSCATG00000030622 #22
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000160095	ENSGT00940000153112.D.n.a.a.a.a.b	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00910000147433	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Pig-tailed macaque	MODERN SPECIES	526	USP15 (ENSMNEG00000034455) #7	TAFA2 (ENSMNEG00000039543) #9	SLC16A7 (ENSMNEG00000037883) #11	ENSMNEG00000028683	LRIG3 (ENSMNEG00000044505) #12	ENSMNEG00000042001	ENSMNEG00000041854	ATP23 (ENSMNEG00000041777) #14	CTDSP2 (ENSMNEG00000036456) #15	AVIL (ENSMNEG00000036238) #16	TSFM (ENSMNEG00000026351) #17	EEF1AKMT3 (ENSMNEG00000027641) #18	METTL1 (ENSMNEG00000036839) #19	CYP27B1 (ENSMNEG00000031976) #20	MARCHF9 (ENSMNEG00000032432) #21	CDK4 (ENSMNEG00000032141) #22	TSPAN31 (ENSMNEG00000032135) #23	AGAP2 (ENSMNEG00000044301) #24	OS9 (ENSMNEG00000045314) #25	ENSMNEG00000039102	B4GALNT1 (ENSMNEG00000044537) #26	ENSMNEG00000037313 #27	ENSMNEG00000008865	ARHGEF25 (ENSMNEG00000033217) #28	DTX3 (ENSMNEG00000022272) #29	PIP4K2C (ENSMNEG00000029241) #30	KIF5A (ENSMNEG00000035622) #31	ENSMNEG00000040712	ENSMNEG00000042894	DCTN2 (ENSMNEG00000042396) #32	MBD6 (ENSMNEG00000039788) #33
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000058741	ENSMFAG00000065544	SLC16A7 (ENSMFAG00000002564) #11	ENSMFAG00000033295	LRIG3 (ENSMFAG00000045511) #12	ATP23 (ENSMFAG00000031681) #14	CTDSP2 (ENSMFAG00000043750) #15	AVIL (ENSMFAG00000030854) #16	TSFM (ENSMFAG00000036132) #17	EEF1AKMT3 (ENSMFAG00000040212) #18	METTL1 (ENSMFAG00000035422) #19	CYP27B1 (ENSMFAG00000001508) #20	MARCHF9 (ENSMFAG00000057711) #21	TSPAN31 (ENSMFAG00000030163) #23	AGAP2 (ENSMFAG00000000465) #24	CDK4 (ENSMFAG00000043769) #22	OS9 (ENSMFAG00000033882) #25	B4GALNT1 (ENSMFAG00000034688) #26	ENSMFAG00000042325 #27	ARHGEF25 (ENSMFAG00000043848) #28	DTX3 (ENSMFAG00000042770) #29	PIP4K2C (ENSMFAG00000040121) #30	ENSMFAG00000058268	ENSMFAG00000046000	KIF5A (ENSMFAG00000038846) #31	DCTN2 (ENSMFAG00000001581) #32	MBD6 (ENSMFAG00000002085) #33	DDIT3 (ENSMFAG00000045278) #34	MARS1 (ENSMFAG00000010123) #35	ARHGAP9 (ENSMFAG00000039577) #36	GLI1 (ENSMFAG00000032745) #37
Rhesus	MODERN SPECIES	2	ENSMMUG00000049330 ##8	SLC16A7 (ENSMMUG00000014778) #11	ENSMMUG00000050355	ENSMMUG00000001210	ENSMMUG00000055477	LRIG3 (ENSMMUG00000004233) #12	ENSMMUG00000055026	ATP23 (ENSMMUG00000060302) #14	GEMIN7 (ENSMMUG00000057217)	CTDSP2 (ENSMMUG00000050282) #15	AVIL (ENSMMUG00000005319) #16	TSFM (ENSMMUG00000005893) #17	METTL1 (ENSMMUG00000022148) #19	CYP27B1 (ENSMMUG00000022144) #20	MARCHF9 (ENSMMUG00000046540) #21	CDK4 (ENSMMUG00000023694) #22	TSPAN31 (ENSMMUG00000023691) #23	AGAP2 (ENSMMUG00000023690) #24	OS9 (ENSMMUG00000020710) #25	B4GALNT1 (ENSMMUG00000001182) #26	SLC26A10 (ENSMMUG00000001181) #27	ARHGEF25 (ENSMMUG00000031819) #28	DTX3 (ENSMMUG00000001180) #29	PIP4K2C (ENSMMUG00000001179) #30	KIF5A (ENSMMUG00000011297) #31	DCTN2 (ENSMMUG00000011292) #32	MBD6 (ENSMMUG00000011289) #33	DDIT3 (ENSMMUG00000011286) #34	MARS1 (ENSMMUG00000011277) #35	ARHGAP9 (ENSMMUG00000022060) #36	GLI1 (ENSMMUG00000022058) #37
Vervet Monkey	MODERN SPECIES	2	AVPR1A (ENSCSAG00000004509)	PPM1H (ENSCSAG00000004515)	MON2 (ENSCSAG00000004527)	USP15 (ENSCSAG00000004536) #7	TAFA2 (ENSCSAG00000004540) #9	SLC16A7 (ENSCSAG00000004542) #11	LRIG3 (ENSCSAG00000004553) #12	ATP23 (ENSCSAG00000004569) #14	CTDSP2 (ENSCSAG00000004582) #15	AVIL (ENSCSAG00000004596) #16	TSFM (ENSCSAG00000004601) #17	EEF1AKMT3 (ENSCSAG00000004607) #18	METTL1 (ENSCSAG00000004611) #19	CYP27B1 (ENSCSAG00000004618) #20	MARCHF9 (ENSCSAG00000004626) #21	CDK4 (ENSCSAG00000004632) #22	TSPAN31 (ENSCSAG00000004636) #23	AGAP2 (ENSCSAG00000004659) #24	OS9 (ENSCSAG00000004671) #25	B4GALNT1 (ENSCSAG00000004682) #26	ENSCSAG00000004712 #27	ARHGEF25 (ENSCSAG00000004726) #28	DTX3 (ENSCSAG00000004736) #29	PIP4K2C (ENSCSAG00000004746) #30	KIF5A (ENSCSAG00000004788) #31	DCTN2 (ENSCSAG00000004807) #32	MBD6 (ENSCSAG00000004813) #33	DDIT3 (ENSCSAG00000004816) #34	MARS1 (ENSCSAG00000004852) #35	ARHGAP9 (ENSCSAG00000004886) #36	GLI1 (ENSCSAG00000004897) #37
Rhinopithecus	ANCESTRAL SPECIES	127								ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Golden snub-nosed monkey	MODERN SPECIES	2709							ENSRROG00000035009	ATP23 (ENSRROG00000037423) #14	CTDSP2 (ENSRROG00000019124) #15	AVIL (ENSRROG00000029904) #16	TSFM (ENSRROG00000031769) #17	EEF1AKMT3 (ENSRROG00000041399) #18	METTL1 (ENSRROG00000037434) #19	CYP27B1 (ENSRROG00000021316) #20	MARCHF9 (ENSRROG00000036411) #21	CDK4 (ENSRROG00000029986) #22	TSPAN31 (ENSRROG00000028862) #23	AGAP2 (ENSRROG00000022063) #24	OS9 (ENSRROG00000012909) #25	B4GALNT1 (ENSRROG00000032117) #26	ENSRROG00000043251 #27	ARHGEF25 (ENSRROG00000037976) #28	DTX3 (ENSRROG00000042632) #29	PIP4K2C (ENSRROG00000043215) #30	KIF5A (ENSRROG00000031394) #31	ENSRROG00000037835	DCTN2 (ENSRROG00000038229) #32	MBD6 (ENSRROG00000043452) #33	DDIT3 (ENSRROG00000025508) #34	MARS1 (ENSRROG00000042331) #35	ARHGAP9 (ENSRROG00000045516) #36
Black snub-nosed monkey	MODERN SPECIES	2689								ATP23 (ENSRBIG00000031075) #14	CTDSP2 (ENSRBIG00000043068) #15	AVIL (ENSRBIG00000042308) #16	TSFM (ENSRBIG00000037278) #17	EEF1AKMT3 (ENSRBIG00000034886) #18	METTL1 (ENSRBIG00000038916) #19	CYP27B1 (ENSRBIG00000032328) #20	MARCHF9 (ENSRBIG00000035604) #21	CDK4 (ENSRBIG00000033584) #22	TSPAN31 (ENSRBIG00000037854) #23	AGAP2 (ENSRBIG00000042644) #24	OS9 (ENSRBIG00000041377) #25	ENSRBIG00000028891
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840.a	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Gorilla	MODERN SPECIES	3	MON2 (ENSGGOG00000012086)	USP15 (ENSGGOG00000002771) #7	ENSGGOG00000041474	TAFA2 (ENSGGOG00000004620) #9	SLC16A7 (ENSGGOG00000024992) #11	ENSGGOG00000042922	LRIG3 (ENSGGOG00000016188) #12	ATP23 (ENSGGOG00000010708) #14	CTDSP2 (ENSGGOG00000023706) #15	AVIL (ENSGGOG00000001418) #16	TSFM (ENSGGOG00000001415) #17	EEF1AKMT3 (ENSGGOG00000001413) #18	METTL1 (ENSGGOG00000001411) #19	CYP27B1 (ENSGGOG00000001409) #20	MARCHF9 (ENSGGOG00000001407) #21	CDK4 (ENSGGOG00000001404) #22	TSPAN31 (ENSGGOG00000022283) #23	AGAP2 (ENSGGOG00000001399) #24	OS9 (ENSGGOG00000001393) #25	B4GALNT1 (ENSGGOG00000006301) #26	SLC26A10 (ENSGGOG00000034835) #27	ARHGEF25 (ENSGGOG00000006284) #28	DTX3 (ENSGGOG00000003156) #29	PIP4K2C (ENSGGOG00000026749) #30	KIF5A (ENSGGOG00000001996) #31	ENSGGOG00000039203	DCTN2 (ENSGGOG00000001991) #32	MBD6 (ENSGGOG00000001989) #33	DDIT3 (ENSGGOG00000001987) #34	MARS1 (ENSGGOG00000001982) #35	ARHGAP9 (ENSGGOG00000001977) #36
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Pan	ANCESTRAL SPECIES	4	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.m.b	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.c #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000245729	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Chimpanzee	MODERN SPECIES	3	USP15 (ENSPTRG00000005163) #7	ENSPTRG00000048315	TAFA2 (ENSPTRG00000005162) #9	ENSPTRG00000038999	SLC16A7 (ENSPTRG00000005160) #11	ENSPTRG00000044366	LRIG3 (ENSPTRG00000005159) #12	ATP23 (ENSPTRG00000005156) #14	CTDSP2 (ENSPTRG00000005155) #15	AVIL (ENSPTRG00000005153) #16	TSFM (ENSPTRG00000005152) #17	EEF1AKMT3 (ENSPTRG00000005151) #18	METTL1 (ENSPTRG00000005150) #19	CYP27B1 (ENSPTRG00000005149) #20	MARCHF9 (ENSPTRG00000005148) #21	CDK4 (ENSPTRG00000005147) #22	TSPAN31 (ENSPTRG00000005146) #23	AGAP2 (ENSPTRG00000005145) #24	OS9 (ENSPTRG00000005144) #25	B4GALNT1 (ENSPTRG00000005143) #26	SLC26A10 (ENSPTRG00000050038) #27	ARHGEF25 (ENSPTRG00000005142) #28	DTX3 (ENSPTRG00000005141) #29	PIP4K2C (ENSPTRG00000005140) #30	KIF5A (ENSPTRG00000005139) #31	ENSPTRG00000049678	ENSPTRG00000043238	DCTN2 (ENSPTRG00000005138) #32	MBD6 (ENSPTRG00000039026) #33	DDIT3 (ENSPTRG00000022781) #34	MARS1 (ENSPTRG00000005135) #35
Bonobo	MODERN SPECIES	3	MON2 (ENSPPAG00000036500)	USP15 (ENSPPAG00000001187) #7	ENSPPAG00000031469	TAFA2 (ENSPPAG00000030151) #9	SLC16A7 (ENSPPAG00000035323) #11	ENSPPAG00000031170	LRIG3 (ENSPPAG00000041349) #12	ATP23 (ENSPPAG00000035425) #14	CTDSP2 (ENSPPAG00000013270) #15	AVIL (ENSPPAG00000043314) #16	TSFM (ENSPPAG00000043428) #17	EEF1AKMT3 (ENSPPAG00000025733) #18	METTL1 (ENSPPAG00000042594) #19	CYP27B1 (ENSPPAG00000031025) #20	ENSPPAG00000033727 #21	CDK4 (ENSPPAG00000036900) #22	TSPAN31 (ENSPPAG00000024342) #23	AGAP2 (ENSPPAG00000034874) #24	OS9 (ENSPPAG00000026298) #25	B4GALNT1 (ENSPPAG00000037931) #26	ENSPPAG00000042121 #27	ARHGEF25 (ENSPPAG00000043262) #28	DTX3 (ENSPPAG00000037059) #29	PIP4K2C (ENSPPAG00000037986) #30	KIF5A (ENSPPAG00000038022) #31	ENSPPAG00000024674	DCTN2 (ENSPPAG00000003745) #32	MBD6 (ENSPPAG00000041542) #33	DDIT3 (ENSPPAG00000034304) #34	MARS1 (ENSPPAG00000025147) #35	ARHGAP9 (ENSPPAG00000043620) #36
Human	MODERN SPECIES	3	PPM1H (ENSG00000111110)	MON2 (ENSG00000061987)	USP15 (ENSG00000135655) #7	TAFA2 (ENSG00000198673) #9	SLC16A7 (ENSG00000118596) #11	LRIG3 (ENSG00000139263) #12	ATP23 (ENSG00000166896) #14	CTDSP2 (ENSG00000175215) #15	AVIL (ENSG00000135407) #16	TSFM (ENSG00000123297) #17	ENSG00000257921	EEF1AKMT3 (ENSG00000123427) #18	METTL1 (ENSG00000037897) #19	CYP27B1 (ENSG00000111012) #20	MARCHF9 (ENSG00000139266) #21	CDK4 (ENSG00000135446) #22	TSPAN31 (ENSG00000135452) #23	AGAP2 (ENSG00000135439) #24	OS9 (ENSG00000135506) #25	B4GALNT1 (ENSG00000135454) #26	ARHGEF25 (ENSG00000240771) #28	DTX3 (ENSG00000178498) #29	PIP4K2C (ENSG00000166908) #30	KIF5A (ENSG00000155980) #31	DCTN2 (ENSG00000175203) #32	MBD6 (ENSG00000166987) #33	ENSG00000285133	DDIT3 (ENSG00000175197) #34	MARS1 (ENSG00000166986) #35	ARHGAP9 (ENSG00000123329) #36	GLI1 (ENSG00000111087) #37
Orangutan	MODERN SPECIES	3	USP15 (ENSPPYG00000004717) #7	TAFA2 (ENSPPYG00000004716) #9	SLC16A7 (ENSPPYG00000004715) #11	LRIG3 (ENSPPYG00000004714) #12	ENSPPYG00000004712	ATP23 (ENSPPYG00000004713) #14	CTDSP2 (ENSPPYG00000004711) #15	ENSPPYG00000039234	ENSPPYG00000004710	AVIL (ENSPPYG00000004709) #16	TSFM (ENSPPYG00000004708) #17	EEF1AKMT3 (ENSPPYG00000004707) #18	METTL1 (ENSPPYG00000004706) #19	CYP27B1 (ENSPPYG00000004705) #20	MARCHF9 (ENSPPYG00000004704) #21	CDK4 (ENSPPYG00000004703) #22	TSPAN31 (ENSPPYG00000039091) #23	AGAP2 (ENSPPYG00000004701) #24	OS9 (ENSPPYG00000004700) #25	B4GALNT1 (ENSPPYG00000004699) #26	ENSPPYG00000032086 #27	ARHGEF25 (ENSPPYG00000004698) #28	DTX3 (ENSPPYG00000004697) #29	PIP4K2C (ENSPPYG00000004696) #30	KIF5A (ENSPPYG00000004695) #31	DCTN2 (ENSPPYG00000004694) #32	MBD6 (ENSPPYG00000004693) #33	ENSPPYG00000036117	DDIT3 (ENSPPYG00000036558) #34	MARS1 (ENSPPYG00000004691) #35	ARHGAP9 (ENSPPYG00000004690) #36
Gibbon	MODERN SPECIES	1	ENSNLEG00000029093	MON2 (ENSNLEG00000017095)	USP15 (ENSNLEG00000017123) #7	TAFA2 (ENSNLEG00000017128) #9	SLC16A7 (ENSNLEG00000017130) #11	ENSNLEG00000017135	LRIG3 (ENSNLEG00000017137) #12	ATP23 (ENSNLEG00000017160) #14	CTDSP2 (ENSNLEG00000017164) #15	AVIL (ENSNLEG00000017172) #16	TSFM (ENSNLEG00000017178) #17	EEF1AKMT3 (ENSNLEG00000030947) #18	METTL1 (ENSNLEG00000017183) #19	CYP27B1 (ENSNLEG00000017190) #20	MARCHF9 (ENSNLEG00000032051) #21	CDK4 (ENSNLEG00000017205) #22	TSPAN31 (ENSNLEG00000017218) #23	AGAP2 (ENSNLEG00000017220) #24	OS9 (ENSNLEG00000017232) #25	B4GALNT1 (ENSNLEG00000017250) #26	ENSNLEG00000017254 #27	ARHGEF25 (ENSNLEG00000017259) #28	DTX3 (ENSNLEG00000017271) #29	PIP4K2C (ENSNLEG00000017276) #30	ENSNLEG00000017285	KIF5A (ENSNLEG00000034703) #31	DCTN2 (ENSNLEG00000017286) #32	ENSNLEG00000017170 #33	DDIT3 (ENSNLEG00000017291) #34	MARS1 (ENSNLEG00000017297) #35	ARHGAP9 (ENSNLEG00000017320) #36
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.k.a	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT00940000165389	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.q.a.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Cebidae	DUPLICATION
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00390000014756.k.a	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT00940000165389	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.q.a.a.a.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000157309 #11	ENSGT00390000014756.k.a	ENSGT00940000157098 #12	ENSGT00940000162753.d	ENSGT00390000010948 #14	ENSGT00940000165389	ENSGT01040000240451.a.b.a #15	ENSGT00910000147840	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.q.a.a.a.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	96		ENSCCAG00000038111	SLC16A7 (ENSCCAG00000003896) #11	ENSCCAG00000025448	LRIG3 (ENSCCAG00000035058) #12	ENSCCAG00000030354	ATP23 (ENSCCAG00000029599) #14	CTDSP2 (ENSCCAG00000036508) #15	ENSCCAG00000034289	AVIL (ENSCCAG00000028989) #16	TSFM (ENSCCAG00000033254) #17	EEF1AKMT3 (ENSCCAG00000036111) #18	METTL1 (ENSCCAG00000027591) #19	CYP27B1 (ENSCCAG00000022326) #20	MARCHF9 (ENSCCAG00000017126) #21	ENSCCAG00000032223 #22	TSPAN31 (ENSCCAG00000023207) #23	AGAP2 (ENSCCAG00000030248) #24	OS9 (ENSCCAG00000030884) #25	B4GALNT1 (ENSCCAG00000026932) #26	ENSCCAG00000034534 #27	ARHGEF25 (ENSCCAG00000021234) #28	ENSCCAG00000034962 #29	ENSCCAG00000023779 #30	ENSCCAG00000035627	KIF5A (ENSCCAG00000029255) #31	DCTN2 (ENSCCAG00000037079) #32	MBD6 (ENSCCAG00000030668) #33	DDIT3 (ENSCCAG00000030994) #34	MARS1 (ENSCCAG00000032206) #35	ARHGAP9 (ENSCCAG00000034302) #36
Capuchin	MODERN SPECIES	135	DNAJC6 (ENSCCAG00000037238)	ENSCCAG00000037501	AK4 (ENSCCAG00000027862)	ENSCCAG00000026470	JAK1 (ENSCCAG00000021638)	RAVER2 (ENSCCAG00000029834)	CACHD1 (ENSCCAG00000023418)	UBE2U (ENSCCAG00000015166)	ROR1 (ENSCCAG00000036191)	PGM1 (ENSCCAG00000022674)	EFCAB7 (ENSCCAG00000030206)	ITGB3BP (ENSCCAG00000023808)	ENSCCAG00000023464	ENSCCAG00000019669	ALG6 (ENSCCAG00000026213)	ENSCCAG00000037577 #22	FOXD3 (ENSCCAG00000020242)	ATG4C (ENSCCAG00000014124)	DOCK7 (ENSCCAG00000036383)	ANGPTL3 (ENSCCAG00000037800)	ENSCCAG00000032139	KANK4 (ENSCCAG00000020881)	PATJ (ENSCCAG00000020603)	ENSCCAG00000031088	ENSCCAG00000037571	NFIA (ENSCCAG00000034568)	ENSCCAG00000002026
Marmoset	MODERN SPECIES	21	ENSCJAG00000079877	ENSCJAG00000078043	SLC16A7 (ENSCJAG00000006419) #11	ENSCJAG00000076895	LRIG3 (ENSCJAG00000006423) #12	ATP23 (ENSCJAG00000006490) #14	ENSCJAG00000071765	CTDSP2 (ENSCJAG00000006503) #15	ENSCJAG00000038659	AVIL (ENSCJAG00000006549) #16	ENSCJAG00000006600 #17	EEF1AKMT3 (ENSCJAG00000045095) #18	METTL1 (ENSCJAG00000006615) #19	CYP27B1 (ENSCJAG00000006652) #20	MARCHF9 (ENSCJAG00000045412) #21	CDK4 (ENSCJAG00000006697) #22	TSPAN31 (ENSCJAG00000006760) #23	AGAP2 (ENSCJAG00000006784) #24	ENSCJAG00000076241	OS9 (ENSCJAG00000006838) #25	B4GALNT1 (ENSCJAG00000006905) #26	ENSCJAG00000064140 #27	ENSCJAG00000080590	ARHGEF25 (ENSCJAG00000006921) #28	DTX3 (ENSCJAG00000006966) #29	PIP4K2C (ENSCJAG00000006988) #30	KIF5A (ENSCJAG00000007033) #31	DCTN2 (ENSCJAG00000007091) #32	MBD6 (ENSCJAG00000007202) #33	ENSCJAG00000007243 #34	MARS1 (ENSCJAG00000007249) #35
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.a.a.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.a.a.b #22
Capuchin	MODERN SPECIES	53	ENSCCAG00000036387	ENSCCAG00000025686	DIRAS2 (ENSCCAG00000003086)	SPATA31E1 (ENSCCAG00000035735)	GADD45G (ENSCCAG00000035443)	SEMA4D (ENSCCAG00000007872)	SECISBP2 (ENSCCAG00000013350)	CKS2 (ENSCCAG00000019936)	SHC3 (ENSCCAG00000025034)	S1PR3 (ENSCCAG00000016134)	ENSCCAG00000021120	NXNL2 (ENSCCAG00000034827)	ENSCCAG00000002548	SPIN1 (ENSCCAG00000033606)	ENSCCAG00000010497	ENSCCAG00000028773 #22	ENSCCAG00000030560	ENSCCAG00000023977	CDK20 (ENSCCAG00000032198)	ENSCCAG00000034271	ZNF169 (ENSCCAG00000018084)	ENSCCAG00000026426	ENSCCAG00000017783	PTPDC1 (ENSCCAG00000032858)	BARX1 (ENSCCAG00000026395)
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.a.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.a.b #22
Bolivian squirrel monkey	MODERN SPECIES	60	SLC16A7 (ENSSBOG00000029848) #11	ENSSBOG00000025571	LRIG3 (ENSSBOG00000029374) #12	ENSSBOG00000020948	ATP23 (ENSSBOG00000035964) #14	ENSSBOG00000026262	CTDSP2 (ENSSBOG00000020949) #15	ENSSBOG00000034416	ENSSBOG00000033430	AVIL (ENSSBOG00000018907) #16	TSFM (ENSSBOG00000021465) #17	EEF1AKMT3 (ENSSBOG00000025187) #18	METTL1 (ENSSBOG00000018949) #19	CYP27B1 (ENSSBOG00000023154) #20	MARCHF9 (ENSSBOG00000029099) #21	ENSSBOG00000035238 #22	TSPAN31 (ENSSBOG00000020330) #23	AGAP2 (ENSSBOG00000015494) #24	OS9 (ENSSBOG00000028966) #25	ENSSBOG00000033815	B4GALNT1 (ENSSBOG00000027894) #26	ENSSBOG00000030939	ENSSBOG00000028275 #27	ARHGEF25 (ENSSBOG00000024503) #28	DTX3 (ENSSBOG00000020773) #29	PIP4K2C (ENSSBOG00000033181) #30	ENSSBOG00000033928	KIF5A (ENSSBOG00000027539) #31	DCTN2 (ENSSBOG00000034543) #32	MBD6 (ENSSBOG00000006917) #33	DDIT3 (ENSSBOG00000025810) #34
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	834			ENSANAG00000027100	LRIG3 (ENSANAG00000021137) #12	ENSANAG00000026956	ENSANAG00000031124	ATP23 (ENSANAG00000027211) #14	ENSANAG00000026476	CTDSP2 (ENSANAG00000033001) #15	AVIL (ENSANAG00000022922) #16	TSFM (ENSANAG00000038019) #17	EEF1AKMT3 (ENSANAG00000025028) #18	METTL1 (ENSANAG00000021665) #19	CYP27B1 (ENSANAG00000029315) #20	MARCHF9 (ENSANAG00000029912) #21	ENSANAG00000031497 #22	TSPAN31 (ENSANAG00000029017) #23	AGAP2 (ENSANAG00000038009) #24	OS9 (ENSANAG00000037858) #25	B4GALNT1 (ENSANAG00000034723) #26	ENSANAG00000037611	ENSANAG00000025341 #27	ARHGEF25 (ENSANAG00000032997) #28	DTX3 (ENSANAG00000030171) #29	PIP4K2C (ENSANAG00000035409) #30	ENSANAG00000030488	KIF5A (ENSANAG00000023467) #31	ENSANAG00000027286 #32	MBD6 (ENSANAG00000022147) #33	DDIT3 (ENSANAG00000028583) #34	MARS1 (ENSANAG00000027589) #35
Mas night monkey	MODERN SPECIES	406	ENSANAG00000011900	BMP2K (ENSANAG00000032256)	PAQR3 (ENSANAG00000032440)	ANTXR2 (ENSANAG00000020620)	ENSANAG00000038151	PRDM8 (ENSANAG00000027638)	ENSANAG00000018328	FGF5 (ENSANAG00000029794)	CFAP299 (ENSANAG00000029362)	BMP3 (ENSANAG00000038265)	PRKG2 (ENSANAG00000033813)	ENSANAG00000019728	ENSANAG00000035812	ENSANAG00000032331	RASGEF1B (ENSANAG00000021844)	ENSANAG00000034721 #22	HNRNPD (ENSANAG00000035221)	ENSANAG00000029054	ENOPH1 (ENSANAG00000025974)	TMEM150C (ENSANAG00000000048)	ENSANAG00000033681	SCD5 (ENSANAG00000031198)	SEC31A (ENSANAG00000022299)	THAP9 (ENSANAG00000024482)	ENSANAG00000027363	LIN54 (ENSANAG00000026425)	COPS4 (ENSANAG00000029510)	PLAC8 (ENSANAG00000000767)	ENSANAG00000013626	COQ2 (ENSANAG00000035844)	HPSE (ENSANAG00000038449)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000154770.q.a.b #22
Cebidae_a	DUPLICATION
Cebidae_a	ANCESTRAL SPECIES	98														ENSGT00390000016954	ENSGT00390000011354.c	ENSGT00940000154770.q.a.b.a #22	ENSGT00390000017590	ENSGT00940000155064.d	ENSGT00390000009790.u	ENSGT00940000157134	ENSGT00390000013639	ENSGT00940000154406.b.h	ENSGT00940000155080	ENSGT00940000164728	ENSGT00940000163729	ENSGT00940000155081.D	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155
Capuchin	MODERN SPECIES	460													ENSCCAG00000034530	DST (ENSCCAG00000005204)	BEND6 (ENSCCAG00000035225)	ENSCCAG00000035311 #22	ZNF451 (ENSCCAG00000031377)	BAG2 (ENSCCAG00000027341)	RAB23 (ENSCCAG00000020364)	ENSCCAG00000035240	ENSCCAG00000023284
Bolivian squirrel monkey	MODERN SPECIES	59	ENSSBOG00000021942	ELOVL5 (ENSSBOG00000034870)	GCLC (ENSSBOG00000023419)	KLHL31 (ENSSBOG00000033630)	LRRC1 (ENSSBOG00000035746)	MLIP (ENSSBOG00000026309)	TINAG (ENSSBOG00000032103)	FAM83B (ENSSBOG00000024939)	HCRTR2 (ENSSBOG00000025741)	GFRAL (ENSSBOG00000035990)	HMGCLL1 (ENSSBOG00000035484)	BMP5 (ENSSBOG00000026475)	COL21A1 (ENSSBOG00000026503)	DST (ENSSBOG00000027054)	ENSSBOG00000022537	ENSSBOG00000023362 #22	ENSSBOG00000034355	BAG2 (ENSSBOG00000033323)	RAB23 (ENSSBOG00000033237)	PRIM2 (ENSSBOG00000033256)	KHDRBS2 (ENSSBOG00000019779)	ENSSBOG00000021435	LGSN (ENSSBOG00000031920)	ENSSBOG00000020230	ENSSBOG00000028663	PHF3 (ENSSBOG00000032463)	ENSSBOG00000031359	ENSSBOG00000028568	ENSSBOG00000004169	ADGRB3 (ENSSBOG00000024707)	ENSSBOG00000019508
Cebidae_a	ANCESTRAL SPECIES	107				ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00910000147238	ENSGT00390000006826	ENSGT00940000159898	ENSGT00940000160767	ENSGT00940000156186	ENSGT00940000161229	ENSGT00940000155675	ENSGT00390000006303	ENSGT00940000154770.q.a.b.b #22	ENSGT00390000015143	ENSGT01070000254198	ENSGT00390000012446	ENSGT00680000100065	ENSGT00940000153744.A	ENSGT00950000183178.b.a	ENSGT00940000157085	ENSGT00940000160657	ENSGT00890000139491	ENSGT00940000156785	ENSGT00530000063599.B	ENSGT00390000002174.b	ENSGT00390000006330.a.a	ENSGT00390000010463.a.b	ENSGT00940000154958.lb.b
Bolivian squirrel monkey	MODERN SPECIES	177						CALCRL (ENSSBOG00000032528)	ENSSBOG00000028733	TFPI (ENSSBOG00000024524)	ENSSBOG00000018455	GULP1 (ENSSBOG00000024201)	COL3A1 (ENSSBOG00000032521)	ENSSBOG00000030491	COL5A2 (ENSSBOG00000024117)	ENSSBOG00000020452	WDR75 (ENSSBOG00000019714)	ENSSBOG00000035441 #22	SLC40A1 (ENSSBOG00000022937)	ENSSBOG00000016302	ASNSD1 (ENSSBOG00000007659)	ANKAR (ENSSBOG00000030320)	OSGEPL1 (ENSSBOG00000031666)	ORMDL1 (ENSSBOG00000032805)	PMS1 (ENSSBOG00000033196)	MSTN (ENSSBOG00000026528)	HIBCH (ENSSBOG00000022609)	INPP1 (ENSSBOG00000033808)	MFSD6 (ENSSBOG00000027092)	NEMP2 (ENSSBOG00000025986)	NAB1 (ENSSBOG00000028629)	ENSSBOG00000024065	ENSSBOG00000021637
Capuchin	MODERN SPECIES	268															WDR75 (ENSCCAG00000036257)	ENSCCAG00000033769 #22	SLC40A1 (ENSCCAG00000034390)	ENSCCAG00000021601	ASNSD1 (ENSCCAG00000034482)	ANKAR (ENSCCAG00000020879)	OSGEPL1 (ENSCCAG00000025842)	ORMDL1 (ENSCCAG00000023195)	PMS1 (ENSCCAG00000025273)	MSTN (ENSCCAG00000036474)	HIBCH (ENSCCAG00000034853)	INPP1 (ENSCCAG00000015156)	MFSD6 (ENSCCAG00000025410)	NEMP2 (ENSCCAG00000031311)	NAB1 (ENSCCAG00000001929)	GLS (ENSCCAG00000024542)	STAT1 (ENSCCAG00000031342)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i	ENSGT01030000234639.A.b.a.b.a.b.b.j.c	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A	ENSGT01100000263734	ENSGT00940000153903.a.b.b	ENSGT00940000154770.q.b #22	ENSGT00940000153903.a.a	ENSGT00940000164064	ENSGT00940000161479	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00390000015066	ENSGT00940000155818	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Cebidae	ANCESTRAL SPECIES		ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.i	ENSGT01030000234639.A.b.a.b.a.b.b.j.c	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A	ENSGT01100000263734	ENSGT00940000153903.a.b.b	ENSGT00940000154770.q.b #22	ENSGT00940000153903.a.a	ENSGT00940000164064	ENSGT00940000161479	ENSGT00940000153201.j.k.a.a.a.a.f.a	ENSGT00390000015066	ENSGT00940000155818	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Cebidae_a	ANCESTRAL SPECIES	10	ENSGT00390000008184.k	ENSGT00950000183093.B	ENSGT00910000147241	ENSGT00940000155663	ENSGT00910000147178	ENSGT00940000158651	ENSGT00940000159533	ENSGT00530000063074.b.a	ENSGT01030000234639.A.b.a.b.a.b.b.j.c	ENSGT00940000159916	ENSGT00940000160123	ENSGT00390000007101.d.b	ENSGT00940000154133.A.i	ENSGT01100000263734	ENSGT00940000153903.a.b.b	ENSGT00940000154770.q.b #22	ENSGT00940000153903.a.a	ENSGT00940000164064	ENSGT00940000161479	ENSGT00940000153201.j.k.a.a.a.a.f.a.a	ENSGT00390000015066	ENSGT00940000155818	ENSGT00390000004737.b.a.o.a.a.b	ENSGT00390000004737.b.a.o.a.b.d	ENSGT00940000155622.g	ENSGT00390000004737.b.b	ENSGT00950000182885.A.a	ENSGT00940000160684	ENSGT00940000156912	ENSGT00950000182959.b.b	ENSGT00940000157490
Capuchin	MODERN SPECIES	39	ENSCCAG00000029745	DBX1 (ENSCCAG00000030638)	ENSCCAG00000030549	ENSCCAG00000030635	NAV2 (ENSCCAG00000023073)	E2F8 (ENSCCAG00000032678)	CSRP3 (ENSCCAG00000037898)	ZDHHC13 (ENSCCAG00000031657)	PTPN5 (ENSCCAG00000031767)	IGSF22 (ENSCCAG00000015473)	TMEM86A (ENSCCAG00000022653)	ENSCCAG00000030365	ENSCCAG00000036425	ENSCCAG00000037680	UEVLD (ENSCCAG00000036814)	ENSCCAG00000033011 #22	TSG101 (ENSCCAG00000036169)	ENSCCAG00000020722	LDHAL6A (ENSCCAG00000031041)	LDHC (ENSCCAG00000031200)	ENSCCAG00000029060	ENSCCAG00000028937	GTF2H1 (ENSCCAG00000028407)	HPS5 (ENSCCAG00000032081)	ENSCCAG00000024577	ENSCCAG00000024041	SAA4 (ENSCCAG00000025050)	ENSCCAG00000022385	SAAL1 (ENSCCAG00000025101)	TPH1 (ENSCCAG00000023915)	SERGEF (ENSCCAG00000037352)
Bolivian squirrel monkey	MODERN SPECIES	42	PRMT3 (ENSSBOG00000034320)	HTATIP2 (ENSSBOG00000019955)	DBX1 (ENSSBOG00000028890)	ENSSBOG00000034512	NAV2 (ENSSBOG00000031555)	E2F8 (ENSSBOG00000014864)	CSRP3 (ENSSBOG00000026732)	ZDHHC13 (ENSSBOG00000023472)	ENSSBOG00000023462	PTPN5 (ENSSBOG00000022094)	IGSF22 (ENSSBOG00000035057)	TMEM86A (ENSSBOG00000022647)	SPTY2D1 (ENSSBOG00000019822)	ENSSBOG00000018184	UEVLD (ENSSBOG00000020574)	ENSSBOG00000023915 #22	ENSSBOG00000016234	TSG101 (ENSSBOG00000032898)	LDHAL6A (ENSSBOG00000032789)	LDHC (ENSSBOG00000029573)	ENSSBOG00000023979	GTF2H1 (ENSSBOG00000035194)	HPS5 (ENSSBOG00000034848)	ENSSBOG00000025130	SAA4 (ENSSBOG00000035220)	SAAL1 (ENSSBOG00000000873)	TPH1 (ENSSBOG00000021704)	SERGEF (ENSSBOG00000021636)	KCNC1 (ENSSBOG00000032934)	MYOD1 (ENSSBOG00000032168)	OTOG (ENSSBOG00000031057)
Mas night monkey	MODERN SPECIES	830	HTATIP2 (ENSANAG00000030661)	DBX1 (ENSANAG00000026125)	ENSANAG00000024944	NAV2 (ENSANAG00000034282)	E2F8 (ENSANAG00000021738)	CSRP3 (ENSANAG00000020288)	ZDHHC13 (ENSANAG00000021790)	ENSANAG00000021063	ENSANAG00000016865	PTPN5 (ENSANAG00000021912)	IGSF22 (ENSANAG00000025272)	TMEM86A (ENSANAG00000019649)	SPTY2D1 (ENSANAG00000008192)	ENSANAG00000024616	UEVLD (ENSANAG00000027080)	ENSANAG00000022035 #22	TSG101 (ENSANAG00000019676)	LDHAL6A (ENSANAG00000023203)	LDHC (ENSANAG00000037671)	ENSANAG00000037705	GTF2H1 (ENSANAG00000023697)	HPS5 (ENSANAG00000018225)	ENSANAG00000021057	SAA4 (ENSANAG00000020818)	ENSANAG00000021597	SAAL1 (ENSANAG00000036857)	TPH1 (ENSANAG00000018818)	SERGEF (ENSANAG00000036496)	KCNC1 (ENSANAG00000034875)	MYOD1 (ENSANAG00000032905)	OTOG (ENSANAG00000035931)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000154770.r #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000154770.r #22
Marmoset	MODERN SPECIES	19	TSSK3 (ENSCJAG00000000977)	BSDC1 (ENSCJAG00000000980)	ZBTB8B (ENSCJAG00000023238)	ZBTB8A (ENSCJAG00000001003)	ZBTB8OS (ENSCJAG00000046897)	RBBP4 (ENSCJAG00000001021)	SYNC (ENSCJAG00000001030)	KIAA1522 (ENSCJAG00000001035)	YARS1 (ENSCJAG00000001037)	S100PBP (ENSCJAG00000001064)	FNDC5 (ENSCJAG00000055137)	HPCA (ENSCJAG00000006560)	TMEM54 (ENSCJAG00000001079)	RNF19B (ENSCJAG00000001085)	ENSCJAG00000001105	ENSCJAG00000045578 #22	ENSCJAG00000078886	ENSCJAG00000079364 ##8	AZIN2 (ENSCJAG00000034957)	TRIM62 (ENSCJAG00000045422)	ZNF362 (ENSCJAG00000046438)	A3GALT2 (ENSCJAG00000001190)	PHC2 (ENSCJAG00000001193)	ZSCAN20 (ENSCJAG00000001247)	CSMD2 (ENSCJAG00000001262)	ENSCJAG00000084519	C1orf94 (ENSCJAG00000001370)	GJB5 (ENSCJAG00000001379)	GJB4 (ENSCJAG00000023374)	GJB3 (ENSCJAG00000001380)	GJA4 (ENSCJAG00000001383)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000154770.r #22
Capuchin	MODERN SPECIES	434	MSI1 (ENSCCAG00000035567)	ENSCCAG00000002632	TRIAP1 (ENSCCAG00000005732)	GATC (ENSCCAG00000022235)	SRSF9 (ENSCCAG00000036053)	ENSCCAG00000036052	ENSCCAG00000020736	COQ5 (ENSCCAG00000010621)	RNF10 (ENSCCAG00000025089)	POP5 (ENSCCAG00000023154)	CABP1 (ENSCCAG00000036173)	MLEC (ENSCCAG00000024437)	UNC119B (ENSCCAG00000027048)	ACADS (ENSCCAG00000024502)	SPPL3 (ENSCCAG00000023763)	ENSCCAG00000037331 #22	HNF1A (ENSCCAG00000034473)	ENSCCAG00000038122	OASL (ENSCCAG00000028044)	ENSCCAG00000033497	ENSCCAG00000037824
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	1233							ATP23 (ENSTSYG00000006918) #14	ENSTSYG00000033269	CTDSP2 (ENSTSYG00000037484) #15	AVIL (ENSTSYG00000026397) #16	TSFM (ENSTSYG00000028892) #17	EEF1AKMT3 (ENSTSYG00000037549) #18	METTL1 (ENSTSYG00000011077) #19	CYP27B1 (ENSTSYG00000033786) #20	MARCHF9 (ENSTSYG00000005550) #21	CDK4 (ENSTSYG00000011937) #22	TSPAN31 (ENSTSYG00000037062) #23
Tarsier	MODERN SPECIES	6793																ENSTSYG00000035477 #22
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Mouse lemur	MODERN SPECIES	29	MON2 (ENSMICG00000000252)	ENSMICG00000046671	USP15 (ENSMICG00000000251) #7	TAFA2 (ENSMICG00000045031) #9	SLC16A7 (ENSMICG00000014669) #11	LRIG3 (ENSMICG00000014649) #12	ENSMICG00000041965	ATP23 (ENSMICG00000046863) #14	CTDSP2 (ENSMICG00000003837) #15	AVIL (ENSMICG00000003818) #16	TSFM (ENSMICG00000003812) #17	EEF1AKMT3 (ENSMICG00000030639) #18	METTL1 (ENSMICG00000045368) #19	CYP27B1 (ENSMICG00000037335) #20	MARCHF9 (ENSMICG00000003794) #21	CDK4 (ENSMICG00000003789) #22	TSPAN31 (ENSMICG00000003778) #23	AGAP2 (ENSMICG00000003757) #24	OS9 (ENSMICG00000003746) #25	B4GALNT1 (ENSMICG00000005532) #26	ENSMICG00000032199 #27	ARHGEF25 (ENSMICG00000005518) #28	DTX3 (ENSMICG00000005515) #29	PIP4K2C (ENSMICG00000005508) #30	ENSMICG00000036038	KIF5A (ENSMICG00000005480) #31	DCTN2 (ENSMICG00000005467) #32	MBD6 (ENSMICG00000005436) #33	DDIT3 (ENSMICG00000005434) #34	MARS1 (ENSMICG00000032056) #35	ARHGAP9 (ENSMICG00000005391) #36
Lemuriformes_a	ANCESTRAL SPECIES	27	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Greater bamboo lemur	MODERN SPECIES	128	MON2 (ENSPSMG00000020461)	USP15 (ENSPSMG00000020572) #7	TAFA2 (ENSPSMG00000020617) #9	ENSPSMG00000020624	ENSPSMG00000020641	SLC16A7 (ENSPSMG00000020662) #11	LRIG3 (ENSPSMG00000020698) #12	ATP23 (ENSPSMG00000020719) #14	CTDSP2 (ENSPSMG00000020748) #15	AVIL (ENSPSMG00000020770) #16	TSFM (ENSPSMG00000020846) #17	EEF1AKMT3 (ENSPSMG00000020858) #18	METTL1 (ENSPSMG00000020892) #19	CYP27B1 (ENSPSMG00000020906) #20	MARCHF9 (ENSPSMG00000020914) #21	CDK4 (ENSPSMG00000020948) #22	TSPAN31 (ENSPSMG00000021008) #23	AGAP2 (ENSPSMG00000021106) #24	OS9 (ENSPSMG00000021521) #25	B4GALNT1 (ENSPSMG00000021768) #26	ENSPSMG00000021787 #27	ENSPSMG00000021793 #27	ARHGEF25 (ENSPSMG00000021839) #28	DTX3 (ENSPSMG00000021883) #29	PIP4K2C (ENSPSMG00000021908) #30	KIF5A (ENSPSMG00000022094) #31	ENSPSMG00000022202	DCTN2 (ENSPSMG00000022333) #32	MBD6 (ENSPSMG00000022511) #33	ENSPSMG00000022521	DDIT3 (ENSPSMG00000022525) #34
Coquerels sifaka	MODERN SPECIES	91								ATP23 (ENSPCOG00000020670) #14	CTDSP2 (ENSPCOG00000017710) #15	AVIL (ENSPCOG00000015127) #16	TSFM (ENSPCOG00000021606) #17	EEF1AKMT3 (ENSPCOG00000016251) #18	METTL1 (ENSPCOG00000006594) #19	CYP27B1 (ENSPCOG00000021833) #20	MARCHF9 (ENSPCOG00000016544) #21	CDK4 (ENSPCOG00000005477) #22	TSPAN31 (ENSPCOG00000025655) #23	AGAP2 (ENSPCOG00000022820) #24	OS9 (ENSPCOG00000028286) #25	B4GALNT1 (ENSPCOG00000027771) #26	ENSPCOG00000015531 #27	ARHGEF25 (ENSPCOG00000013968) #28	DTX3 (ENSPCOG00000018782) #29	PIP4K2C (ENSPCOG00000017884) #30	ENSPCOG00000025971	KIF5A (ENSPCOG00000024872) #31	DCTN2 (ENSPCOG00000026517) #32	MBD6 (ENSPCOG00000016659) #33	DDIT3 (ENSPCOG00000016792) #34	MARS1 (ENSPCOG00000017598) #35	ARHGAP9 (ENSPCOG00000019995) #36
Bushbaby	MODERN SPECIES	158					SLC16A7 (ENSOGAG00000008394) #11	ENSOGAG00000025207	LRIG3 (ENSOGAG00000006756) #12	ATP23 (ENSOGAG00000013906) #14	CTDSP2 (ENSOGAG00000012247) #15	AVIL (ENSOGAG00000012238) #16	TSFM (ENSOGAG00000012235) #17	EEF1AKMT3 (ENSOGAG00000025641) #18	METTL1 (ENSOGAG00000014384) #19	CYP27B1 (ENSOGAG00000014379) #20	MARCHF9 (ENSOGAG00000034768) #21	CDK4 (ENSOGAG00000014371) #22	TSPAN31 (ENSOGAG00000026424) #23	AGAP2 (ENSOGAG00000001669) #24	OS9 (ENSOGAG00000014368) #25	B4GALNT1 (ENSOGAG00000005253) #26	ENSOGAG00000025974 #27	ARHGEF25 (ENSOGAG00000034795) #28	DTX3 (ENSOGAG00000033293) #29	PIP4K2C (ENSOGAG00000025918) #30	KIF5A (ENSOGAG00000005238) #31	DCTN2 (ENSOGAG00000005235) #32	MBD6 (ENSOGAG00000005233) #33	DDIT3 (ENSOGAG00000005231) #34	MARS1 (ENSOGAG00000005226) #35	ARHGAP9 (ENSOGAG00000005222) #36	GLI1 (ENSOGAG00000005219) #37
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Tree shrew	MODERN SPECIES	1624										CTDSP2 (ENSTBEG00000012421) #15	AVIL (ENSTBEG00000011791) #16	TSFM (ENSTBEG00000011603) #17	METTL1 (ENSTBEG00000011522) #19	CYP27B1 (ENSTBEG00000011034) #20	MARCHF9 (ENSTBEG00000010865) #21	CDK4 (ENSTBEG00000010793) #22	TSPAN31 (ENSTBEG00000010664) #23	ENSTBEG00000009692 #24	OS9 (ENSTBEG00000017487) #25
Glires	ANCESTRAL SPECIES	4	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Lagomorpha	ANCESTRAL SPECIES	87							ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00910000148800	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Rabbit	MODERN SPECIES	447	ENSOCUG00000032733	SLC16A7 (ENSOCUG00000003052) #11	ENSOCUG00000005527	ENSOCUG00000031613	LRIG3 (ENSOCUG00000015598) #12	ENSOCUG00000036349	ENSOCUG00000031070	ENSOCUG00000002411	ATP23 (ENSOCUG00000001951) #14	CTDSP2 (ENSOCUG00000012533) #15	ENSOCUG00000037733	AVIL (ENSOCUG00000012517) #16	TSFM (ENSOCUG00000012512) #17	METTL1 (ENSOCUG00000012498) #19	CYP27B1 (ENSOCUG00000012486) #20	CDK4 (ENSOCUG00000012474) #22	TSPAN31 (ENSOCUG00000012465) #23	AGAP2 (ENSOCUG00000001304) #24	OS9 (ENSOCUG00000024515) #25	B4GALNT1 (ENSOCUG00000014121) #26	ENSOCUG00000014113 #27	DTX3 (ENSOCUG00000000915) #29	PIP4K2C (ENSOCUG00000000916) #30	ENSOCUG00000031292	KIF5A (ENSOCUG00000011273) #31	DCTN2 (ENSOCUG00000011262) #32	MBD6 (ENSOCUG00000011255) #33	DDIT3 (ENSOCUG00000023877) #34	MARS1 (ENSOCUG00000007373) #35	ARHGAP9 (ENSOCUG00000022807) #36	GLI1 (ENSOCUG00000011128) #37
Pika	MODERN SPECIES	3584									CTDSP2 (ENSOPRG00000006705) #15	AVIL (ENSOPRG00000006677) #16	TSFM (ENSOPRG00000006670) #17	EEF1AKMT3 (ENSOPRG00000006664) #18	METTL1 (ENSOPRG00000006660) #19	CYP27B1 (ENSOPRG00000006649) #20	MARCHF9 (ENSOPRG00000006640) #21	CDK4 (ENSOPRG00000006631) #22	TSPAN31 (ENSOPRG00000006622) #23	OS9 (ENSOPRG00000006604) #25	B4GALNT1 (ENSOPRG00000006593) #26	ARHGEF25 (ENSOPRG00000006581) #28	DTX3 (ENSOPRG00000006576) #29	PIP4K2C (ENSOPRG00000006570) #30	KIF5A (ENSOPRG00000006555) #31	DCTN2 (ENSOPRG00000006544) #32	MBD6 (ENSOPRG00000006533) #33	DDIT3 (ENSOPRG00000006529) #34	MARS1 (ENSOPRG00000006518) #35	ARHGAP9 (ENSOPRG00000006501) #36	GLI1 (ENSOPRG00000006483) #37	INHBE (ENSOPRG00000006480)	INHBC (ENSOPRG00000006476)
Rodentia	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Kangaroo rat	MODERN SPECIES	322	ENSDORG00000025562	Slc16a7 (ENSDORG00000012107) #11	ENSDORG00000028445	Lrig3 (ENSDORG00000010362) #12	ENSDORG00000028332	ENSDORG00000027513	ENSDORG00000024387	ENSDORG00000009511 #14	ENSDORG00000023572 #15	Avil (ENSDORG00000007274) #16	Tsfm (ENSDORG00000007272) #17	Eef1akmt3 (ENSDORG00000027331) #18	Mettl1 (ENSDORG00000007270) #19	Cyp27b1 (ENSDORG00000007269) #20	Marchf9 (ENSDORG00000007268) #21	Cdk4 (ENSDORG00000007267) #22	Tspan31 (ENSDORG00000007266) #23	Agap2 (ENSDORG00000007265) #24	Os9 (ENSDORG00000007263) #25	B4galnt1 (ENSDORG00000004816) #26	Slc26a10 (ENSDORG00000027396) #27	Arhgef25 (ENSDORG00000014405) #28	Dtx3 (ENSDORG00000000412) #29	Pip4k2c (ENSDORG00000026517) #30	Kif5a (ENSDORG00000007141) #31	Dctn2 (ENSDORG00000007137) #32	Mbd6 (ENSDORG00000007136) #33	Ddit3 (ENSDORG00000007132) #34	Mars1 (ENSDORG00000007127) #35	Arhgap9 (ENSDORG00000007126) #36	Gli1 (ENSDORG00000007124) #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	42	Avpr1a (ENSJJAG00000017832)	Ppm1h (ENSJJAG00000017676)	Mon2 (ENSJJAG00000015619)	ENSJJAG00000020160 #7	Tafa2 (ENSJJAG00000018933) #9	ENSJJAG00000012520	ENSJJAG00000011962	ENSJJAG00000003685 #11	Lrig3 (ENSJJAG00000006798) #12	Ctdsp2 (ENSJJAG00000017246) #15	Avil (ENSJJAG00000016587) #16	Tsfm (ENSJJAG00000012907) #17	Eef1akmt3 (ENSJJAG00000012184) #18	Mettl1 (ENSJJAG00000014500) #19	Cyp27b1 (ENSJJAG00000016596) #20	ENSJJAG00000005635 #22	Tspan31 (ENSJJAG00000011792) #23	Marchf9 (ENSJJAG00000000800) #21	Agap2 (ENSJJAG00000012355) #24	Os9 (ENSJJAG00000011446) #25	ENSJJAG00000008739	B4galnt1 (ENSJJAG00000021764) #26	Slc26a10 (ENSJJAG00000000444) #27	Arhgef25 (ENSJJAG00000020641) #28	Dtx3 (ENSJJAG00000015820) #29	ENSJJAG00000016286 #30	Kif5a (ENSJJAG00000018332) #31	Dctn2 (ENSJJAG00000005539) #32	ENSJJAG00000011275 ##33	Ddit3 (ENSJJAG00000011845) #34	Mars1 (ENSJJAG00000018827) #35
Lesser Egyptian jerboa	MODERN SPECIES	143												ENSJJAG00000010768	Elac1 (ENSJJAG00000010672)	Smad4 (ENSJJAG00000008893)	Mex3c (ENSJJAG00000005241)	ENSJJAG00000001355 #22	ENSJJAG00000000847	ENSJJAG00000013702	Dcc (ENSJJAG00000005791)	ENSJJAG00000022704	Vmn2r118 (ENSJJAG00000007013)	ENSJJAG00000022934	ENSJJAG00000022536	ENSJJAG00000010074	ENSJJAG00000009767	ENSJJAG00000009435	Acp5 (ENSJJAG00000002644)	Elof1 (ENSJJAG00000001405)	Cnn1 (ENSJJAG00000001001)	ENSJJAG00000000325	Zfp653 (ENSJJAG00000000128)
Muroidea	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1252									Ctdsp2 (ENSNGAG00000016774) #15	Avil (ENSNGAG00000022648) #16	Tsfm (ENSNGAG00000014356) #17	Eef1akmt3 (ENSNGAG00000015023) #18	Mettl1 (ENSNGAG00000013035) #19	Cyp27b1 (ENSNGAG00000016787) #20	Marchf9 (ENSNGAG00000018675) #21	Cdk4 (ENSNGAG00000011709) #22	ENSNGAG00000018815 #23	Agap2 (ENSNGAG00000019298) #24	Os9 (ENSNGAG00000001426) #25	B4galnt1 (ENSNGAG00000010764) #26	Slc26a10 (ENSNGAG00000007258) #27	Arhgef25 (ENSNGAG00000017593) #28	Dtx3 (ENSNGAG00000005639) #29	Pip4k2c (ENSNGAG00000018449) #30	Kif5a (ENSNGAG00000006172) #31	Dctn2 (ENSNGAG00000020864) #32	Mbd6 (ENSNGAG00000004286) #33	ENSNGAG00000017151 #34	Mars1 (ENSNGAG00000018824) #35	Arhgap9 (ENSNGAG00000006996) #36	Gli1 (ENSNGAG00000013962) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1224	Prdm4 (ENSNGAG00000018627)	Pwp1 (ENSNGAG00000015833)	Abtb3 (ENSNGAG00000011417)	Cry1 (ENSNGAG00000020732)	Mterf2 (ENSNGAG00000000529)	Tmem263 (ENSNGAG00000015885)	Ric8b (ENSNGAG00000018867)	Rfx4 (ENSNGAG00000000351)	Polr3b (ENSNGAG00000011308)	Tcp11l2 (ENSNGAG00000012830)	Ckap4 (ENSNGAG00000015103)	Nuak1 (ENSNGAG00000011987)	1500009L16Rik (ENSNGAG00000013967)	ENSNGAG00000014686	Washc4 (ENSNGAG00000015936)	ENSNGAG00000019266 #22	Aldh1l2 (ENSNGAG00000020174)	Nopchap1 (ENSNGAG00000012316)	Slc41a2 (ENSNGAG00000013889)	ENSNGAG00000015399	Chst11 (ENSNGAG00000017327)	ENSNGAG00000019222	Eid3 (ENSNGAG00000019100)	Nfyb (ENSNGAG00000017224)	Hcfc2 (ENSNGAG00000019076)	Glt8d2 (ENSNGAG00000002040)	Tdg (ENSNGAG00000000667)	ENSNGAG00000013621	Hsp90b1 (ENSNGAG00000014447)	Nt5dc3 (ENSNGAG00000018361)	Stab2 (ENSNGAG00000001493)
Muroidea_A	ANCESTRAL SPECIES	22	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Murinae	ANCESTRAL SPECIES	22	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Mus	ANCESTRAL SPECIES	23	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Mus_A	ANCESTRAL SPECIES	11	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Ryukyu mouse	MODERN SPECIES	1	Avpr1a (MGP_CAROLIEiJ_G0015863)	Ppm1h (MGP_CAROLIEiJ_G0015864)	Mon2 (MGP_CAROLIEiJ_G0015865)	Usp15 (MGP_CAROLIEiJ_G0015866) #7	Tafa2 (MGP_CAROLIEiJ_G0015867) #9	Slc16a7 (MGP_CAROLIEiJ_G0015868) #11	Lrig3 (MGP_CAROLIEiJ_G0015869) #12	Atp23 (MGP_CAROLIEiJ_G0015870) #14	Ctdsp2 (MGP_CAROLIEiJ_G0015871) #15	Avil (MGP_CAROLIEiJ_G0015872) #16	Tsfm (MGP_CAROLIEiJ_G0015873) #17	Eef1akmt3 (MGP_CAROLIEiJ_G0015874) #18	Mettl1 (MGP_CAROLIEiJ_G0015875) #19	Cyp27b1 (MGP_CAROLIEiJ_G0015876) #20	Marchf9 (MGP_CAROLIEiJ_G0015877) #21	Cdk4 (MGP_CAROLIEiJ_G0015878) #22	Tspan31 (MGP_CAROLIEiJ_G0015879) #23	Agap2 (MGP_CAROLIEiJ_G0015880) #24	Os9 (MGP_CAROLIEiJ_G0015881) #25	B4galnt1 (MGP_CAROLIEiJ_G0015882) #26	Slc26a10 (MGP_CAROLIEiJ_G0015883) #27	Arhgef25 (MGP_CAROLIEiJ_G0015884) #28	Dtx3 (MGP_CAROLIEiJ_G0015885) #29	Pip4k2c (MGP_CAROLIEiJ_G0015886) #30	Kif5a (MGP_CAROLIEiJ_G0015887) #31	Dctn2 (MGP_CAROLIEiJ_G0015888) #32	Mbd6 (MGP_CAROLIEiJ_G0015889) #33	Ddit3 (MGP_CAROLIEiJ_G0015890) #34	Mars1 (MGP_CAROLIEiJ_G0015891) #35	MGP_CAROLIEiJ_G0015892 #36	Gli1 (MGP_CAROLIEiJ_G0015893) #37
Mus_B	ANCESTRAL SPECIES	10	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Mouse	MODERN SPECIES	1	Avpr1a (ENSMUSG00000020123)	Ppm1h (ENSMUSG00000034613)	Mon2 (ENSMUSG00000034602)	Usp15 (ENSMUSG00000020124) #7	Tafa2 (ENSMUSG00000044071) #9	Slc16a7 (ENSMUSG00000020102) #11	Lrig3 (ENSMUSG00000020105) #12	Atp23 (ENSMUSG00000025436) #14	Ctdsp2 (ENSMUSG00000078429) #15	Avil (ENSMUSG00000025432) #16	Tsfm (ENSMUSG00000040521) #17	Eef1akmt3 (ENSMUSG00000080115) #18	Mettl1 (ENSMUSG00000006732) #19	Cyp27b1 (ENSMUSG00000006724) #20	Marchf9 (ENSMUSG00000040502) #21	Cdk4 (ENSMUSG00000006728) #22	Tspan31 (ENSMUSG00000006736) #23	Agap2 (ENSMUSG00000025422) #24	Os9 (ENSMUSG00000040462) #25	B4galnt1 (ENSMUSG00000006731) #26	Slc26a10 (ENSMUSG00000040441) #27	Arhgef25 (ENSMUSG00000019467) #28	Dtx3 (ENSMUSG00000040415) #29	Pip4k2c (ENSMUSG00000025417) #30	Kif5a (ENSMUSG00000074657) #31	Dctn2 (ENSMUSG00000025410) #32	Mbd6 (ENSMUSG00000025409) #33	Ddit3 (ENSMUSG00000025408) #34	Ddit3 (ENSMUSG00000116429)	Mars1 (ENSMUSG00000040354) #35	Arhgap9 (ENSMUSG00000040345) #36
Mus_C	ANCESTRAL SPECIES	7	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Steppe mouse	MODERN SPECIES	2158									Ctdsp2 (ENSMSIG00000019304) #15	Avil (ENSMSIG00000019200) #16	Tsfm (ENSMSIG00000019150) #17	Eef1akmt3 (ENSMSIG00000019127) #18	ENSMSIG00000019094 #19	Cyp27b1 (ENSMSIG00000019069) #20	Marchf9 (ENSMSIG00000019050) #21	Cdk4 (ENSMSIG00000019006) #22	Tspan31 (ENSMSIG00000018984) #23	Agap2 (ENSMSIG00000018800) #24	Os9 (ENSMSIG00000018740) #25
spretus	MODERN SPECIES	1	Avpr1a (MGP_SPRETEiJ_G0016688)	Ppm1h (MGP_SPRETEiJ_G0016690)	Mon2 (MGP_SPRETEiJ_G0016691)	Usp15 (MGP_SPRETEiJ_G0016692) #7	Tafa2 (MGP_SPRETEiJ_G0016693) #9	Slc16a7 (MGP_SPRETEiJ_G0016694) #11	Lrig3 (MGP_SPRETEiJ_G0016695) #12	Atp23 (MGP_SPRETEiJ_G0016696) #14	Ctdsp2 (MGP_SPRETEiJ_G0016697) #15	Avil (MGP_SPRETEiJ_G0016698) #16	Tsfm (MGP_SPRETEiJ_G0016699) #17	Eef1akmt3 (MGP_SPRETEiJ_G0016700) #18	Mettl1 (MGP_SPRETEiJ_G0016701) #19	Cyp27b1 (MGP_SPRETEiJ_G0016702) #20	Marchf9 (MGP_SPRETEiJ_G0016703) #21	Cdk4 (MGP_SPRETEiJ_G0016704) #22	Tspan31 (MGP_SPRETEiJ_G0016705) #23	Agap2 (MGP_SPRETEiJ_G0016706) #24	Os9 (MGP_SPRETEiJ_G0016707) #25	B4galnt1 (MGP_SPRETEiJ_G0016708) #26	Slc26a10 (MGP_SPRETEiJ_G0016709) #27	Arhgef25 (MGP_SPRETEiJ_G0016710) #28	Dtx3 (MGP_SPRETEiJ_G0016711) #29	Pip4k2c (MGP_SPRETEiJ_G0016712) #30	Kif5a (MGP_SPRETEiJ_G0016713) #31	Dctn2 (MGP_SPRETEiJ_G0016714) #32	Mbd6 (MGP_SPRETEiJ_G0016715) #33	Ddit3 (MGP_SPRETEiJ_G0016716) #34	Mars1 (MGP_SPRETEiJ_G0016717) #35	MGP_SPRETEiJ_G0016718 #36	Gli1 (MGP_SPRETEiJ_G0016719) #37
Shrew mouse	MODERN SPECIES	22	Avpr1a (MGP_PahariEiJ_G0031222)	Ppm1h (MGP_PahariEiJ_G0031221)	Mon2 (MGP_PahariEiJ_G0031220)	Usp15 (MGP_PahariEiJ_G0031219) #7	Tafa2 (MGP_PahariEiJ_G0031218) #9	Slc16a7 (MGP_PahariEiJ_G0031217) #11	Lrig3 (MGP_PahariEiJ_G0031216) #12	Atp23 (MGP_PahariEiJ_G0031215) #14	Ctdsp2 (MGP_PahariEiJ_G0031214) #15	Avil (MGP_PahariEiJ_G0031213) #16	Tsfm (MGP_PahariEiJ_G0031212) #17	Eef1akmt3 (MGP_PahariEiJ_G0031211) #18	Mettl1 (MGP_PahariEiJ_G0031210) #19	Cyp27b1 (MGP_PahariEiJ_G0031209) #20	Marchf9 (MGP_PahariEiJ_G0031208) #21	Cdk4 (MGP_PahariEiJ_G0031207) #22	Tspan31 (MGP_PahariEiJ_G0031206) #23	Agap2 (MGP_PahariEiJ_G0031205) #24	Os9 (MGP_PahariEiJ_G0031204) #25	B4galnt1 (MGP_PahariEiJ_G0031203) #26	Slc26a10 (MGP_PahariEiJ_G0031202) #27	Arhgef25 (MGP_PahariEiJ_G0031201) #28	Dtx3 (MGP_PahariEiJ_G0031200) #29	Pip4k2c (MGP_PahariEiJ_G0031199) #30	Kif5a (MGP_PahariEiJ_G0031198) #31	Dctn2 (MGP_PahariEiJ_G0031197) #32	Mbd6 (MGP_PahariEiJ_G0031196) #33	Ddit3 (MGP_PahariEiJ_G0031195) #34	Mars1 (MGP_PahariEiJ_G0031194) #35	MGP_PahariEiJ_G0031193 #36	Gli1 (MGP_PahariEiJ_G0031192) #37
Rat	MODERN SPECIES	17	Usp15 (ENSRNOG00000023202) #7	Tafa2 (ENSRNOG00000064852) #9	LOC500845 (ENSRNOG00000029354)	Slc16a7 (ENSRNOG00000007839) #11	ENSRNOG00000031425	Lrig3 (ENSRNOG00000007654) #12	RGD1564306 (ENSRNOG00000032335)	Atp23 (ENSRNOG00000045629) #14	Ctdsp2 (ENSRNOG00000068220) #15	Avil (ENSRNOG00000050419) #16	Tsfm (ENSRNOG00000048843) #17	Eef1akmt3 (ENSRNOG00000047631) #18	Mettl1 (ENSRNOG00000047895) #19	Cyp27b1 (ENSRNOG00000046214) #20	AABR07057423.1 (ENSRNOG00000046245) #21	Cdk4 (ENSRNOG00000025602) #22	Tspan31 (ENSRNOG00000025592) #23	Agap2 (ENSRNOG00000025584) #24	Os9 (ENSRNOG00000025570) #25	RGD1565117 (ENSRNOG00000033161)	B4galnt1 (ENSRNOG00000004839) #26	Slc26a10 (ENSRNOG00000029465) #27	Arhgef25 (ENSRNOG00000005034) #28	Dtx3 (ENSRNOG00000005129) #29	Pip4k2c (ENSRNOG00000005138) #30	Kif5a (ENSRNOG00000005299) #31	ENSRNOG00000069110	Dctn2 (ENSRNOG00000025481) #32	Mbd6 (ENSRNOG00000006209) #33	Ddit3 (ENSRNOG00000006789) #34	Mars1 (ENSRNOG00000025459) #35
Cricetidae	DUPLICATION
Cricetidae	DUPLICATION
Cricetidae	ANCESTRAL SPECIES	21	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.w.b #22	ENSGT00940000154770.w.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Cricetinae	ANCESTRAL SPECIES	22	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.w.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Chinese hamster chok1gshd	MODERN SPECIES	352	Mon2 (ENSCGRG00001014349)	Usp15 (ENSCGRG00001000393) #7	Tafa2 (ENSCGRG00001014019) #9	ENSCGRG00001021690	Slc16a7 (ENSCGRG00001016918) #11	Lrig3 (ENSCGRG00001012777) #12	ENSCGRG00001007637	Atp23 (ENSCGRG00001013234) #14	Ctdsp2 (ENSCGRG00001005659) #15	Avil (ENSCGRG00001012627) #16	TSFM (ENSCGRG00001023000) #17	Eef1akmt3 (ENSCGRG00001022247) #18	Mettl1 (ENSCGRG00001017652) #19	Cyp27b1 (ENSCGRG00001021985) #20	Marchf9 (ENSCGRG00001012220) #21	ENSCGRG00001014084 #22	Tspan31 (ENSCGRG00001020219) #23	Agap2 (ENSCGRG00001013372) #24	Os9 (ENSCGRG00001020659) #25	B4galnt1 (ENSCGRG00001003379) #26	Slc26a10 (ENSCGRG00001023769) #27	Arhgef25 (ENSCGRG00001022612) #28	Dtx3 (ENSCGRG00001000914) #29	Pip4k2c (ENSCGRG00001011872) #30	Kif5a (ENSCGRG00001017636) #31	Dctn2 (ENSCGRG00001015007) #32	Mbd6 (ENSCGRG00001017943) #33	Ddit3 (ENSCGRG00001015590) #34	Mars1 (ENSCGRG00001019238) #35	Arhgap9 (ENSCGRG00001021134) #36	Gli1 (ENSCGRG00001019686) #37
Cricetidae_B	ANCESTRAL SPECIES	35	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.w.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Prairie vole	MODERN SPECIES	10	ENSMOCG00000008797	Ppm1h (ENSMOCG00000013614)	Mon2 (ENSMOCG00000014757)	Usp15 (ENSMOCG00000010029) #7	Tafa2 (ENSMOCG00000002084) #9	Slc16a7 (ENSMOCG00000013757) #11	Lrig3 (ENSMOCG00000015216) #12	Atp23 (ENSMOCG00000007960) #14	Ctdsp2 (ENSMOCG00000020720) #15	Avil (ENSMOCG00000012599) #16	Tsfm (ENSMOCG00000006104) #17	Eef1akmt3 (ENSMOCG00000011230) #18	Mettl1 (ENSMOCG00000020233) #19	Cyp27b1 (ENSMOCG00000018353) #20	Marchf9 (ENSMOCG00000002354) #21	ENSMOCG00000008699 #22	Tspan31 (ENSMOCG00000012333) #23	Agap2 (ENSMOCG00000015636) #24	Os9 (ENSMOCG00000004512) #25	B4galnt1 (ENSMOCG00000020319) #26	Slc26a10 (ENSMOCG00000003649) #27	Arhgef25 (ENSMOCG00000013132) #28	Dtx3 (ENSMOCG00000010598) #29	Pip4k2c (ENSMOCG00000014405) #30	Kif5a (ENSMOCG00000004701) #31	Dctn2 (ENSMOCG00000000594) #32	Mbd6 (ENSMOCG00000012812) #33	Ddit3 (ENSMOCG00000002751) #34	Mars1 (ENSMOCG00000010941) #35	Arhgap9 (ENSMOCG00000002227) #36	Gli1 (ENSMOCG00000015523) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000021831	ENSPEMG00000021612	ENSPEMG00000029990	Kcnq5 (ENSPEMG00000017858)	ENSPEMG00000031021	ENSPEMG00000027863	Ogfrl1 (ENSPEMG00000025100)	B3gat2 (ENSPEMG00000018363)	ENSPEMG00000015532	Sdhaf4 (ENSPEMG00000026560)	Fam135a (ENSPEMG00000020097)	Col9a1 (ENSPEMG00000019296)	Lmbrd1 (ENSPEMG00000007299)	ENSPEMG00000018680	ENSPEMG00000025443 #22	ENSPEMG00000027987 #22	Phf3 (ENSPEMG00000029836)	Ptp4a1 (ENSPEMG00000028379)	ENSPEMG00000027646	ENSPEMG00000001468	Lgsn (ENSPEMG00000008615)	Khdrbs2 (ENSPEMG00000011247)	Prim2 (ENSPEMG00000026079)	Rab23 (ENSPEMG00000023271)	Bag2 (ENSPEMG00000022944)	Zfp451 (ENSPEMG00000023654)	Bend6 (ENSPEMG00000016987)	Dst (ENSPEMG00000028075)	Ccdc115 (ENSPEMG00000020161)	ENSPEMG00000030399	Ptpn18 (ENSPEMG00000020123)
Northern American deer mouse	MODERN SPECIES	13	ENSPEMG00000030274	ENSPEMG00000021831	ENSPEMG00000021612	ENSPEMG00000029990	Kcnq5 (ENSPEMG00000017858)	ENSPEMG00000031021	ENSPEMG00000027863	Ogfrl1 (ENSPEMG00000025100)	B3gat2 (ENSPEMG00000018363)	ENSPEMG00000015532	Sdhaf4 (ENSPEMG00000026560)	Fam135a (ENSPEMG00000020097)	Col9a1 (ENSPEMG00000019296)	Lmbrd1 (ENSPEMG00000007299)	ENSPEMG00000018680	ENSPEMG00000025443 #22	ENSPEMG00000027987 #22	Phf3 (ENSPEMG00000029836)	Ptp4a1 (ENSPEMG00000028379)	ENSPEMG00000027646	ENSPEMG00000001468	Lgsn (ENSPEMG00000008615)	Khdrbs2 (ENSPEMG00000011247)	Prim2 (ENSPEMG00000026079)	Rab23 (ENSPEMG00000023271)	Bag2 (ENSPEMG00000022944)	Zfp451 (ENSPEMG00000023654)	Bend6 (ENSPEMG00000016987)	Dst (ENSPEMG00000028075)	Ccdc115 (ENSPEMG00000020161)	ENSPEMG00000030399
Cricetidae	ANCESTRAL SPECIES	21	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.w.b #22	ENSGT00940000154770.w.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000154770.w.b #22
Golden Hamster	MODERN SPECIES	710	Kics2 (ENSMAUG00000001214)	Srgap1 (ENSMAUG00000016602)	ENSMAUG00000004495	ENSMAUG00000001518	ENSMAUG00000000577	ENSMAUG00000019840 #7	Tafa2 (ENSMAUG00000016370) #9	ENSMAUG00000014402	Slc16a7 (ENSMAUG00000013959) #11	ENSMAUG00000012985 #12	ENSMAUG00000016897 #15	Avil (ENSMAUG00000012739) #16	Tsfm (ENSMAUG00000011705) #17	Eef1akmt3 (ENSMAUG00000010832) #18	Cyp27b1 (ENSMAUG00000008020) #20	Cdk4 (ENSMAUG00000010648) #22	Marchf9 (ENSMAUG00000010248) #21	Agap2 (ENSMAUG00000007077) #24	Os9 (ENSMAUG00000019379) #25	ENSMAUG00000017551 #26	Arhgef25 (ENSMAUG00000016660) #28	Dtx3 (ENSMAUG00000019649) #29	Pip4k2c (ENSMAUG00000019443) #30	Kif5a (ENSMAUG00000013563) #31	Dctn2 (ENSMAUG00000013335) #32	Mbd6 (ENSMAUG00000010881) #33	Mars1 (ENSMAUG00000011482) #35	Arhgap9 (ENSMAUG00000013068) #36	Gli1 (ENSMAUG00000010937) #37	Inhbe (ENSMAUG00000008071)	Inhbc (ENSMAUG00000013085)
Chinese hamster chok1gshd	MODERN SPECIES	33							Pfn5 (ENSCGRG00001010921)	Asb12 (ENSCGRG00001014869)	Amer1 (ENSCGRG00001010468)	Arhgef9 (ENSCGRG00001019472)	Spin4 (ENSCGRG00001002178)	ENSCGRG00001008111	ENSCGRG00001011077	Gspt2 (ENSCGRG00001002796)	Maged1 (ENSCGRG00001010048)	ENSCGRG00001022089 #22	Apoo (ENSCGRG00001001608)	ENSCGRG00001001188	ENSCGRG00001000633	Klhl15 (ENSCGRG00001012393)	Eif2s3x (ENSCGRG00001023286)	Zfx (ENSCGRG00001017582)	ENSCGRG00001003431	AU015836 (ENSCGRG00001020701)	Pdk3 (ENSCGRG00001023514)	Pcyt1b (ENSCGRG00001014447)	Pola1 (ENSCGRG00001013675)	Arx (ENSCGRG00001017219)	ENSCGRG00001012438	ENSCGRG00001002948	ENSCGRG00001013233
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00940000154770.w.b #22
Northern American deer mouse	MODERN SPECIES	9	Avpr1a (ENSPEMG00000027000)	Ppm1h (ENSPEMG00000000159)	Mon2 (ENSPEMG00000016912)	ENSPEMG00000014279 #7	Tafa2 (ENSPEMG00000012757) #9	Slc16a7 (ENSPEMG00000011696) #11	Lrig3 (ENSPEMG00000008787) #12	Atp23 (ENSPEMG00000007916) #14	Ctdsp2 (ENSPEMG00000029308) #15	Avil (ENSPEMG00000003557) #16	Tsfm (ENSPEMG00000000414) #17	Eef1akmt3 (ENSPEMG00000027288) #18	Mettl1 (ENSPEMG00000030468) #19	Cyp27b1 (ENSPEMG00000016226) #20	Marchf9 (ENSPEMG00000017943) #21	ENSPEMG00000015354 #22	Tspan31 (ENSPEMG00000000054) #23	Agap2 (ENSPEMG00000017050) #24	Os9 (ENSPEMG00000015919) #25	B4galnt1 (ENSPEMG00000015244) #26	ENSPEMG00000025878 #27	ENSPEMG00000013550 #27	Arhgef25 (ENSPEMG00000011625) #28	Dtx3 (ENSPEMG00000010078) #29	Pip4k2c (ENSPEMG00000009463) #30	Kif5a (ENSPEMG00000007193) #31	ENSPEMG00000024880	Dctn2 (ENSPEMG00000003096) #32	Mbd6 (ENSPEMG00000000952) #33	Ddit3 (ENSPEMG00000025876)	Ddit3 (ENSPEMG00000000565) #34
Prairie vole	MODERN SPECIES	129	Klrk1 (ENSMOCG00000009655)	Klrd1 (ENSMOCG00000019998)	Klre1 (ENSMOCG00000014157)	Gabarapl1 (ENSMOCG00000006724)	Tmem52b (ENSMOCG00000006658)	Olr1 (ENSMOCG00000001827)	Clec7a (ENSMOCG00000005849)	Clec1a (ENSMOCG00000015147)	Clec9a (ENSMOCG00000006480)	Clec1b (ENSMOCG00000006834)	Clec12b (ENSMOCG00000011279)	Clec12a (ENSMOCG00000017710)	Clec2m (ENSMOCG00000003185)	Cd69 (ENSMOCG00000002536)	ENSMOCG00000003015	ENSMOCG00000017323 #22	ENSMOCG00000002174	ENSMOCG00000007038	ENSMOCG00000002625	ENSMOCG00000004183	ENSMOCG00000000226	ENSMOCG00000016794	ENSMOCG00000006512
Cricetidae	ANCESTRAL SPECIES																	ENSGT00940000154770.x #22
Cricetidae_B	ANCESTRAL SPECIES																	ENSGT00940000154770.x #22
Northern American deer mouse	MODERN SPECIES	11	Gpr63 (ENSPEMG00000026056)	Ndufaf4 (ENSPEMG00000031258)	Klhl32 (ENSPEMG00000006572)	Mms22l (ENSPEMG00000008908)	Pou3f2 (ENSPEMG00000002130)	Fbxl4 (ENSPEMG00000015634)	Faxc (ENSPEMG00000000141)	Coq3 (ENSPEMG00000002775)	Pnisr (ENSPEMG00000003524)	ENSPEMG00000030192	Usp45 (ENSPEMG00000006676)	Tstd3 (ENSPEMG00000011487)	Ccnc (ENSPEMG00000015952)	Prdm13 (ENSPEMG00000000098)	ENSPEMG00000029781	ENSPEMG00000006880 #22	Nkain3 (ENSPEMG00000000608)	Sntg1 (ENSPEMG00000008856)	Pcmtd1 (ENSPEMG00000027595)	ENSPEMG00000009884	ENSPEMG00000029331	St18 (ENSPEMG00000021799)	ENSPEMG00000025981	ENSPEMG00000024780	Alkal1 (ENSPEMG00000022797)	Rb1cc1 (ENSPEMG00000022179)	ENSPEMG00000027986	Npbwr1 (ENSPEMG00000001350)	ENSPEMG00000004044	Oprk1 (ENSPEMG00000030744)	ENSPEMG00000024522
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000154770.x #22
Chinese hamster chok1gshd	MODERN SPECIES	76	Aff1 (ENSCGRG00001015769)	Klhl8 (ENSCGRG00001018481)	ENSCGRG00001023510	Hsd17b13 (ENSCGRG00001005914)	Hsd17b11 (ENSCGRG00001007844)	Nudt9 (ENSCGRG00001011849)	Gm17660 (ENSCGRG00001013296)	Sparcl1 (ENSCGRG00001009590)	Dmp1 (ENSCGRG00001013845)	Ibsp (ENSCGRG00001016273)	Mepe (ENSCGRG00001019599)	Dspp (ENSCGRG00001007381)	Spp1 (ENSCGRG00001012247)	Pkd2 (ENSCGRG00001016312)	Thoc2l (ENSCGRG00001009811)	ENSCGRG00001023071 #22	Abcg3 (ENSCGRG00001004887)	ENSCGRG00001000571	Kctd6 (ENSCGRG00001009848)	Acox2 (ENSCGRG00001013444)	Fam107a (ENSCGRG00001022141)	Fam3d (ENSCGRG00001000168)	ENSCGRG00001016036	Cfap20dc (ENSCGRG00001017819)	ENSCGRG00001011021	ENSCGRG00001008920	Fhit (ENSCGRG00001000886)	ENSCGRG00001023304	3830406C13Rik (ENSCGRG00001009640)	Fezf2 (ENSCGRG00001011113)	Cadps (ENSCGRG00001018622)
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000010762 #12	ENSHGLG00000047428	ENSHGLG00000013299	ENSHGLG00000002824	ENSHGLG00000019649	ENSHGLG00000049232	ENSHGLG00000000518	ENSHGLG00000039977 #14	CTDSP2 (ENSHGLG00000005482) #15	AVIL (ENSHGLG00000006939) #16	TSFM (ENSHGLG00000035817) #17	EEF1AKMT3 (ENSHGLG00000014041) #18	METTL1 (ENSHGLG00000040341) #19	CYP27B1 (ENSHGLG00000018056) #20	MARCHF9 (ENSHGLG00000031879) #21	CDK4 (ENSHGLG00000034505) #22	TSPAN31 (ENSHGLG00000009305) #23	AGAP2 (ENSHGLG00000009759) #24	OS9 (ENSHGLG00000018868) #25	ENSHGLG00000032575	B4GALNT1 (ENSHGLG00000016963) #26	ENSHGLG00000015674 #27	ENSHGLG00000044481	ENSHGLG00000035780 ##27	ARHGEF25 (ENSHGLG00000018169) #28	DTX3 (ENSHGLG00000033032) #29	PIP4K2C (ENSHGLG00000016024) #30	ENSHGLG00000043824	DCTN2 (ENSHGLG00000013797) #32	ENSHGLG00000047970 #33	ENSHGLG00000041807
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Guinea pig	MODERN SPECIES	9	AVPR1A (ENSCPOG00000034144)	PPM1H (ENSCPOG00000011289)	MON2 (ENSCPOG00000032417)	USP15 (ENSCPOG00000000584) #7	TAFA2 (ENSCPOG00000035228) #9	SLC16A7 (ENSCPOG00000010219) #11	LRIG3 (ENSCPOG00000011502) #12	ATP23 (ENSCPOG00000039300) #14	CTDSP2 (ENSCPOG00000039281) #15	AVIL (ENSCPOG00000012226) #16	TSFM (ENSCPOG00000037732) #17	EEF1AKMT3 (ENSCPOG00000011497) #18	METTL1 (ENSCPOG00000000066) #19	CYP27B1 (ENSCPOG00000019603) #20	MARCHF9 (ENSCPOG00000002671) #21	CDK4 (ENSCPOG00000033131) #22	TSPAN31 (ENSCPOG00000011494) #23	AGAP2 (ENSCPOG00000022267) #24	OS9 (ENSCPOG00000002667) #25	B4GALNT1 (ENSCPOG00000003202) #26	ENSCPOG00000033620 #27	ARHGEF25 (ENSCPOG00000020097) #28	PIP4K2C (ENSCPOG00000022071) #30	KIF5A (ENSCPOG00000012882) #31	DCTN2 (ENSCPOG00000012879) #32	MBD6 (ENSCPOG00000012873) #33	DDIT3 (ENSCPOG00000012871) #34	MARS1 (ENSCPOG00000012866) #35	ARHGAP9 (ENSCPOG00000014343) #36	GLI1 (ENSCPOG00000005414) #37	INHBE (ENSCPOG00000031115)
Hystricomorpha_b	ANCESTRAL SPECIES	13	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Long-tailed chinchilla	MODERN SPECIES	165	AVPR1A (ENSCLAG00000012006)	ENSCLAG00000011671	MON2 (ENSCLAG00000012321)	USP15 (ENSCLAG00000015158) #7	TAFA2 (ENSCLAG00000015199) #9	SLC16A7 (ENSCLAG00000011812) #11	LRIG3 (ENSCLAG00000010704) #12	ATP23 (ENSCLAG00000010629) #14	CTDSP2 (ENSCLAG00000015950) #15	AVIL (ENSCLAG00000009924) #16	TSFM (ENSCLAG00000009226) #17	EEF1AKMT3 (ENSCLAG00000012713) #18	METTL1 (ENSCLAG00000014968) #19	CYP27B1 (ENSCLAG00000013845) #20	TSPAN31 (ENSCLAG00000013511) #23	CDK4 (ENSCLAG00000012995) #22	MARCHF9 (ENSCLAG00000012609) #21	AGAP2 (ENSCLAG00000009332) #24	OS9 (ENSCLAG00000010151) #25	B4GALNT1 (ENSCLAG00000009160) #26	ENSCLAG00000011703 #27	ARHGEF25 (ENSCLAG00000010120) #28	DTX3 (ENSCLAG00000008560) #29	PIP4K2C (ENSCLAG00000012549) #30	KIF5A (ENSCLAG00000011917) #31	DCTN2 (ENSCLAG00000010761) #32	MBD6 (ENSCLAG00000010083) #33	DDIT3 (ENSCLAG00000009376) #34	MARS1 (ENSCLAG00000012164) #35	ARHGAP9 (ENSCLAG00000015213) #36	GLI1 (ENSCLAG00000010833) #37
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	327			ENSODEG00000002094	ENSODEG00000018777	ENSODEG00000018814	ENSODEG00000002068	ATP23 (ENSODEG00000002049) #14	ENSODEG00000002035	ENSODEG00000002015 #15	AVIL (ENSODEG00000001940) #16	TSFM (ENSODEG00000001882) #17	EEF1AKMT3 (ENSODEG00000001854) #18	METTL1 (ENSODEG00000001799) #19	CYP27B1 (ENSODEG00000001745) #20	MARCHF9 (ENSODEG00000001713) #21	ENSODEG00000001702 #22	TSPAN31 (ENSODEG00000001691) #23	AGAP2 (ENSODEG00000001675) #24	OS9 (ENSODEG00000001586) #25	B4GALNT1 (ENSODEG00000002156) #26	ENSODEG00000002108 #27	ARHGEF25 (ENSODEG00000002032) #28	DTX3 (ENSODEG00000001975) #29	PIP4K2C (ENSODEG00000001958) #30	KIF5A (ENSODEG00000001884) #31	DCTN2 (ENSODEG00000001844) #32	ENSODEG00000001830 #33	ENSODEG00000001814 #33	DDIT3 (ENSODEG00000001801) #34	MARS1 (ENSODEG00000001752) #35	ARHGAP9 (ENSODEG00000001619) #36
Degu	MODERN SPECIES	134	ENSODEG00000019860	LIMA1 (ENSODEG00000010787)	ENSODEG00000019715	ENSODEG00000019772	CERS5 (ENSODEG00000010040)	GPD1 (ENSODEG00000011334)	ENSODEG00000010634	SMARCD1 (ENSODEG00000010234)	ASIC1 (ENSODEG00000009913)	RACGAP1 (ENSODEG00000010159)	AQP6 (ENSODEG00000009870)	AQP5 (ENSODEG00000011095)	AQP2 (ENSODEG00000010450)	ENSODEG00000012970	FAIM2 (ENSODEG00000009571)	ENSODEG00000011097 #22	ENSODEG00000010974	ENSODEG00000019768	BCDIN3D (ENSODEG00000009705)	NCKAP5L (ENSODEG00000009975)	ENSODEG00000019759	TMBIM6 (ENSODEG00000009820)	ENSODEG00000010356	FMNL3 (ENSODEG00000011056)	ENSODEG00000010201	ENSODEG00000010921	MCRS1 (ENSODEG00000010219)	KCNH3 (ENSODEG00000010379)	ENSODEG00000011171	ENSODEG00000012398	ENSODEG00000010211
Degu	MODERN SPECIES	96	ENSODEG00000019613	ENSODEG00000013303	ENSODEG00000007791	RBM10 (ENSODEG00000008955)	UBA1 (ENSODEG00000009310)	CDK16 (ENSODEG00000009017)	USP11 (ENSODEG00000010135)	ENSODEG00000019537	ZNF157 (ENSODEG00000008760)	ARAF (ENSODEG00000010748)	SYN1 (ENSODEG00000010912)	TIMP1 (ENSODEG00000011225)	CFP (ENSODEG00000009141)	UXT (ENSODEG00000009123)	ZNF81 (ENSODEG00000009602)	ENSODEG00000009466 #22	ZNF182 (ENSODEG00000010486)	ENSODEG00000009058	ENSODEG00000009360	ENSODEG00000019635	FTSJ1 (ENSODEG00000009855)	PORCN (ENSODEG00000008780)	ENSODEG00000009371	TBC1D25 (ENSODEG00000009376)	ENSODEG00000019740	ENSODEG00000009372	WDR13 (ENSODEG00000009758)	ENSODEG00000009972	WAS (ENSODEG00000009320)	SUV39H1 (ENSODEG00000010079)	ENSODEG00000009872
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00530000065303.b	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b.i #27	ENSGT01070000253775.a.d.b.j #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305 #34
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005019352	MON2 (ENSSVLG00005017702)	USP15 (ENSSVLG00005017376) #7	ENSSVLG00005017329	TAFA2 (ENSSVLG00005017243) #9	SLC16A7 (ENSSVLG00005017200) #11	LRIG3 (ENSSVLG00005016786) #12	ATP23 (ENSSVLG00005016743) #14	CTDSP2 (ENSSVLG00005016687) #15	AVIL (ENSSVLG00005016505) #16	ENSSVLG00005016349 #17	EEF1AKMT3 (ENSSVLG00005016307) #18	METTL1 (ENSSVLG00005016268) #19	CYP27B1 (ENSSVLG00005016149) #20	MARCHF9 (ENSSVLG00005016118) #21	CDK4 (ENSSVLG00005015967) #22	TSPAN31 (ENSSVLG00005015825) #23	AGAP2 (ENSSVLG00005015393) #24	OS9 (ENSSVLG00005015079) #25	B4GALNT1 (ENSSVLG00005014897) #26	ENSSVLG00005014760 #27	ENSSVLG00005014611 #27	ARHGEF25 (ENSSVLG00005014310) #28	DTX3 (ENSSVLG00005014198) #29	PIP4K2C (ENSSVLG00005014089) #30	KIF5A (ENSSVLG00005013715) #31	DCTN2 (ENSSVLG00005013297) #32	MBD6 (ENSSVLG00005013192) #33	DDIT3 (ENSSVLG00005013130) #34	MARS1 (ENSSVLG00005012921) #35	ARHGAP9 (ENSSVLG00005011907) #36
Eurasian red squirrel	MODERN SPECIES	16	CYB5R4 (ENSSVLG00005004926)	ENSSVLG00005005005	ENSSVLG00005005021	SNAP91 (ENSSVLG00005005174)	PRSS35 (ENSSVLG00005005648)	ME1 (ENSSVLG00005005672)	RWDD2A (ENSSVLG00005005733)	PGM3 (ENSSVLG00005005768)	DOP1A (ENSSVLG00005005866)	UBE3D (ENSSVLG00005005911)	ENSSVLG00005005937	TPBG (ENSSVLG00005005982)	IBTK (ENSSVLG00005006031)	ENSSVLG00005006118	TENT5A (ENSSVLG00005006145)	ENSSVLG00005006230 #22	ENSSVLG00005006265	BCKDHB (ENSSVLG00005006295)	TTK (ENSSVLG00005006338)	ELOVL4 (ENSSVLG00005006524)	SH3BGRL2 (ENSSVLG00005006564)	LCA5 (ENSSVLG00005006608)	HMGN3 (ENSSVLG00005006702)	PHIP (ENSSVLG00005006782)	IRAK1BP1 (ENSSVLG00005006952)	ENSSVLG00005006976	MEI4 (ENSSVLG00005006998)	ENSSVLG00005007055	HTR1B (ENSSVLG00005007066)	ENSSVLG00005007097	ENSSVLG00005007111
Marmotini	ANCESTRAL SPECIES	4	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00530000065303.b	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000004428.a.l.a.b	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b.i #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01090000261933	ENSGT00390000006305.e #34	ENSGT00550000075017 #35
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	3	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000004428.a.l.a.b	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.bb #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b.i #27	ENSGT01070000253775.a.d.b.j #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305.e #34	ENSGT00550000075017 #35
Squirrel	MODERN SPECIES	246							SLC16A7 (ENSSTOG00000008048) #11	LRIG3 (ENSSTOG00000002283) #12	ATP23 (ENSSTOG00000001187) #14	CTDSP2 (ENSSTOG00000023365) #15	AVIL (ENSSTOG00000001162) #16	EEF1AKMT3 (ENSSTOG00000024160) #18	TSFM (ENSSTOG00000001159) #17	METTL1 (ENSSTOG00000001154) #19	CYP27B1 (ENSSTOG00000001146) #20	ENSSTOG00000001142 #22	TSPAN31 (ENSSTOG00000001138) #23	MARCHF9 (ENSSTOG00000021963) #21	AGAP2 (ENSSTOG00000001113) #24	OS9 (ENSSTOG00000001100) #25	ENSSTOG00000031108	ENSSTOG00000014458	B4GALNT1 (ENSSTOG00000001087) #26	ENSSTOG00000020554 #27	ARHGEF25 (ENSSTOG00000001189) #28	DTX3 (ENSSTOG00000026285) #29	PIP4K2C (ENSSTOG00000001081) #30	KIF5A (ENSSTOG00000001164) #31	DCTN2 (ENSSTOG00000001156) #32	ENSSTOG00000001143 #33	ENSSTOG00000019858 #34
Arctic ground squirrel	MODERN SPECIES	197						LRIG3 (ENSUPAG00010017739) #12	ENSUPAG00010017731	ENSUPAG00010017722 #14	CTDSP2 (ENSUPAG00010017709) #15	AVIL (ENSUPAG00010017677) #16	TSFM (ENSUPAG00010017664) #17	EEF1AKMT3 (ENSUPAG00010017654) #18	METTL1 (ENSUPAG00010017651) #19	CYP27B1 (ENSUPAG00010017630) #20	MARCHF9 (ENSUPAG00010017626) #21	ENSUPAG00010017617 #22	TSPAN31 (ENSUPAG00010017607) #23	AGAP2 (ENSUPAG00010017556) #24	OS9 (ENSUPAG00010017513) #25	B4GALNT1 (ENSUPAG00010017501) #26	ENSUPAG00010017441 #27	ARHGEF25 (ENSUPAG00010017411) #28	DTX3 (ENSUPAG00010017398) #29	PIP4K2C (ENSUPAG00010017376) #30	ENSUPAG00010017369	KIF5A (ENSUPAG00010017316) #31	DCTN2 (ENSUPAG00010017296) #32	MBD6 (ENSUPAG00010017279) #33	ENSUPAG00010017275 #34	MARS1 (ENSUPAG00010017243) #35	GLI1 (ENSUPAG00010017222) #37
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000160143	ENSGT00950000183100.A	ENSGT00390000009328	ENSGT00390000011417.m	ENSGT01100000263557.A.b.a.a.b	ENSGT01100000263557.A.b.a.a.a.b	ENSGT01100000263482.A.a.b	ENSGT00940000156011	ENSGT00390000015052.i.b	ENSGT00940000157894	ENSGT00500000044916	ENSGT00940000157653	ENSGT00940000160652	ENSGT01100000263545.a.b.d.a	ENSGT00390000017671.b	ENSGT00940000154770.cb #22	ENSGT00940000155044.B	ENSGT00390000016353	ENSGT00950000182967.a.a.a.a.b.a.i.a.a	ENSGT00950000182967.a.a.a.a.b.a.i.b	ENSGT00950000182967.a.a.a.a.b.b.b	ENSGT00950000182967.a.b	ENSGT00950000182967.b	ENSGT00390000017113	ENSGT00390000002349	ENSGT00390000015814	ENSGT00940000156482	ENSGT00940000155883.a.a	ENSGT00940000161596	ENSGT00940000158564.d	ENSGT00940000158564.c.a.d
Arctic ground squirrel	MODERN SPECIES	168																ENSUPAG00010003607 #22	CSNK1G3 (ENSUPAG00010003616)	CEP120 (ENSUPAG00010003650)	PRDM6 (ENSUPAG00010003694)	PPIC (ENSUPAG00010003724)	SNX24 (ENSUPAG00010003736)	ENSUPAG00010003751	SNCAIP (ENSUPAG00010003776)	ENSUPAG00010003843	ENSUPAG00010003847	LOX (ENSUPAG00010003850)	SRFBP1 (ENSUPAG00010003868)	ENSUPAG00010003888	FTMT (ENSUPAG00010003933)	PRR16 (ENSUPAG00010003942)	ENSUPAG00010003954
Squirrel	MODERN SPECIES	75	DOK4 (ENSSTOG00000023553)	ENSSTOG00000015150	COQ9 (ENSSTOG00000015145)	ENSSTOG00000015141	CCL17 (ENSSTOG00000015140)	CX3CL1 (ENSSTOG00000015132)	CCL22 (ENSSTOG00000010260)	PLLP (ENSSTOG00000010257)	ENSSTOG00000010254	RSPRY1 (ENSSTOG00000010241)	PSME3IP1 (ENSSTOG00000010232)	CPNE2 (ENSSTOG00000010217)	NLRC5 (ENSSTOG00000009773)	CETP (ENSSTOG00000003544)	HERPUD1 (ENSSTOG00000009526)	ENSSTOG00000029244 #22	SLC12A3 (ENSSTOG00000024370)	NUP93 (ENSSTOG00000004337)	ENSSTOG00000032532	MT1M (ENSSTOG00000020323)	ENSSTOG00000024849	MT3 (ENSSTOG00000025924)	MT4 (ENSSTOG00000005917)	BBS2 (ENSSTOG00000005878)	OGFOD1 (ENSSTOG00000005854)	NUDT21 (ENSSTOG00000005838)	AMFR (ENSSTOG00000007758)	GNAO1 (ENSSTOG00000007746)	CES5A (ENSSTOG00000026351)	ENSSTOG00000027692	ENSSTOG00000026768
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	11	USP15 (ENSMMMG00000010151) #7	ENSMMMG00000010275	TAFA2 (ENSMMMG00000010293) #9	ENSMMMG00000010307	SLC16A7 (ENSMMMG00000010337) #11	LRIG3 (ENSMMMG00000010368) #12	ENSMMMG00000010406	ATP23 (ENSMMMG00000010425) #14	CTDSP2 (ENSMMMG00000010438) #15	AVIL (ENSMMMG00000010450) #16	TSFM (ENSMMMG00000010500) #17	EEF1AKMT3 (ENSMMMG00000010507) #18	METTL1 (ENSMMMG00000010517) #19	CYP27B1 (ENSMMMG00000010536) #20	MARCHF9 (ENSMMMG00000010562) #21	CDK4 (ENSMMMG00000010571) #22	TSPAN31 (ENSMMMG00000010594) #23	AGAP2 (ENSMMMG00000010604) #24	OS9 (ENSMMMG00000010642) #25	ENSMMMG00000010692	B4GALNT1 (ENSMMMG00000010698) #26	ENSMMMG00000010726 #27	ARHGEF25 (ENSMMMG00000010788) #28	DTX3 (ENSMMMG00000010875) #29	PIP4K2C (ENSMMMG00000010891) #30	KIF5A (ENSMMMG00000010904) #31	ENSMMMG00000011019	DCTN2 (ENSMMMG00000011027) #32	MBD6 (ENSMMMG00000011054) #33	ENSMMMG00000011091	ENSMMMG00000011094 #34
Alpin marmot	MODERN SPECIES	23	DOK4 (ENSMMMG00000010285)	POLR2C (ENSMMMG00000010317)	ENSMMMG00000010330	ENSMMMG00000010342	CCL17 (ENSMMMG00000010360)	ENSMMMG00000010372	CCL22 (ENSMMMG00000010378)	PLLP (ENSMMMG00000010387)	ENSMMMG00000010394	RSPRY1 (ENSMMMG00000010401)	PSME3IP1 (ENSMMMG00000010473)	CPNE2 (ENSMMMG00000010490)	NLRC5 (ENSMMMG00000010522)	CETP (ENSMMMG00000010666)	HERPUD1 (ENSMMMG00000010751)	ENSMMMG00000010768 #22	SLC12A3 (ENSMMMG00000010780)	NUP93 (ENSMMMG00000010845)	MT1M (ENSMMMG00000010946)	MT1B (ENSMMMG00000010953)	ENSMMMG00000010962	ENSMMMG00000010970	MT4 (ENSMMMG00000010984)	BBS2 (ENSMMMG00000011004)	OGFOD1 (ENSMMMG00000011049)	NUDT21 (ENSMMMG00000011230)	AMFR (ENSMMMG00000011247)	ENSMMMG00000011267	ENSMMMG00000011278	CES5A (ENSMMMG00000011355)	ENSMMMG00000011414
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Eulipotyphla	ANCESTRAL SPECIES	27									ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23
Hedgehog	MODERN SPECIES	3225													METTL1 (ENSEEUG00000006927) #19	CYP27B1 (ENSEEUG00000006824) #20	MARCHF9 (ENSEEUG00000006764) #21	CDK4 (ENSEEUG00000006734) #22	TSPAN31 (ENSEEUG00000006647) #23
Common shrew	MODERN SPECIES	2411																CDK4 (ENSSARG00000011020) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Chiroptera	ANCESTRAL SPECIES	4	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1056				SLC16A7 (ENSMLUG00000005779) #11	LRIG3 (ENSMLUG00000005327) #12	ENSMLUG00000024528	ENSMLUG00000028028	ATP23 (ENSMLUG00000014488) #14	CTDSP2 (ENSMLUG00000005963) #15	AVIL (ENSMLUG00000005946) #16	TSFM (ENSMLUG00000005940) #17	EEF1AKMT3 (ENSMLUG00000005939) #18	METTL1 (ENSMLUG00000005935) #19	CYP27B1 (ENSMLUG00000005927) #20	MARCHF9 (ENSMLUG00000005921) #21	ENSMLUG00000023651 #22	TSPAN31 (ENSMLUG00000005915) #23	AGAP2 (ENSMLUG00000008775) #24	OS9 (ENSMLUG00000005905) #25	B4GALNT1 (ENSMLUG00000002578) #26	ENSMLUG00000030169 #27	ARHGEF25 (ENSMLUG00000001115) #28	DTX3 (ENSMLUG00000001110) #29	PIP4K2C (ENSMLUG00000001102) #30	KIF5A (ENSMLUG00000001079) #31	DCTN2 (ENSMLUG00000001065) #32	DDIT3 (ENSMLUG00000001055) #34	MARS1 (ENSMLUG00000001037) #35	ARHGAP9 (ENSMLUG00000001022) #36	GLI1 (ENSMLUG00000001013) #37	INHBE (ENSMLUG00000001009)
Microbat	MODERN SPECIES	939	ENSMLUG00000001892	ENSMLUG00000028852	LONRF3 (ENSMLUG00000009240)	ENSMLUG00000014630	IL13RA1 (ENSMLUG00000017055)	DOCK11 (ENSMLUG00000017040)	WDR44 (ENSMLUG00000013400)	KLHL13 (ENSMLUG00000027393)	ENSMLUG00000009996	ENSMLUG00000028410	ENSMLUG00000005847	ENSMLUG00000005842	AGTR2 (ENSMLUG00000004283)	PLS3 (ENSMLUG00000005398)	LRCH2 (ENSMLUG00000001866)	ENSMLUG00000025585 #22	IL13RA2 (ENSMLUG00000010477)	HTR2C (ENSMLUG00000000264)	ENSMLUG00000030503	ENSMLUG00000028246	AMOT (ENSMLUG00000003647)	LHFPL1 (ENSMLUG00000009118)	RTL4 (ENSMLUG00000016922)	TRPC5 (ENSMLUG00000003191)	ALG13 (ENSMLUG00000006264)	ENSMLUG00000028647	ENSMLUG00000005902	CAPN6 (ENSMLUG00000005892)	PAK3 (ENSMLUG00000003929)	CHRDL1 (ENSMLUG00000003122)	ENSMLUG00000001341
Greater horseshoe bat	MODERN SPECIES	1	PPM1H (ENSRFEG00010001118)	MON2 (ENSRFEG00010000888)	ENSRFEG00010000769 #7	TAFA2 (ENSRFEG00010000707) #9	ENSRFEG00010000681	SLC16A7 (ENSRFEG00010000654) #11	LRIG3 (ENSRFEG00010000572) #12	ATP23 (ENSRFEG00010000518) #14	CTDSP2 (ENSRFEG00010000437) #15	AVIL (ENSRFEG00010017502) #16	TSFM (ENSRFEG00010017349) #17	EEF1AKMT3 (ENSRFEG00010017275) #18	METTL1 (ENSRFEG00010017174) #19	CYP27B1 (ENSRFEG00010017027) #20	MARCHF9 (ENSRFEG00010016968) #21	CDK4 (ENSRFEG00010016927) #22	TSPAN31 (ENSRFEG00010016812) #23	AGAP2 (ENSRFEG00010016731) #24	OS9 (ENSRFEG00010016224) #25	B4GALNT1 (ENSRFEG00010016048) #26	ENSRFEG00010016009 #27	ARHGEF25 (ENSRFEG00010015714) #28	DTX3 (ENSRFEG00010015618) #29	PIP4K2C (ENSRFEG00010015482) #30	KIF5A (ENSRFEG00010014988) #31	DCTN2 (ENSRFEG00010014458) #32	MBD6 (ENSRFEG00010014397) #33	DDIT3 (ENSRFEG00010014315) #34	MARS1 (ENSRFEG00010014176) #35	ARHGAP9 (ENSRFEG00010014003) #36	GLI1 (ENSRFEG00010013635) #37
Megabat	MODERN SPECIES	2431									CTDSP2 (ENSPVAG00000012144) #15	AVIL (ENSPVAG00000012143) #16	TSFM (ENSPVAG00000012141) #17	EEF1AKMT3 (ENSPVAG00000012137) #18	METTL1 (ENSPVAG00000012136) #19	CYP27B1 (ENSPVAG00000012133) #20	MARCHF9 (ENSPVAG00000012132) #21	CDK4 (ENSPVAG00000012131) #22	TSPAN31 (ENSPVAG00000012129) #23	AGAP2 (ENSPVAG00000012128) #24	OS9 (ENSPVAG00000012127) #25	B4GALNT1 (ENSPVAG00000012126) #26	ARHGEF25 (ENSPVAG00000012125) #28	DTX3 (ENSPVAG00000012124) #29	PIP4K2C (ENSPVAG00000012123) #30	KIF5A (ENSPVAG00000012121) #31	DCTN2 (ENSPVAG00000012120) #32	MBD6 (ENSPVAG00000012115) #33	DDIT3 (ENSPVAG00000012114) #34	MARS1 (ENSPVAG00000012112) #35	ARHGAP9 (ENSPVAG00000012110) #36	GLI1 (ENSPVAG00000012109) #37	INHBE (ENSPVAG00000012108)
Equus	ANCESTRAL SPECIES	43	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Donkey	MODERN SPECIES	14	AVPR1A (ENSEASG00005007521)	ENSEASG00005038481	MON2 (ENSEASG00005007505)	USP15 (ENSEASG00005007483) #7	TAFA2 (ENSEASG00005007475) #9	SLC16A7 (ENSEASG00005007473) #11	LRIG3 (ENSEASG00005007461) #12	ATP23 (ENSEASG00005033798) #14	CTDSP2 (ENSEASG00005007450) #15	AVIL (ENSEASG00005007334) #16	TSFM (ENSEASG00005007292) #17	EEF1AKMT3 (ENSEASG00005025309) #18	METTL1 (ENSEASG00005007286) #19	CYP27B1 (ENSEASG00005007282) #20	MARCHF9 (ENSEASG00005032907) #21	CDK4 (ENSEASG00005007275) #22	TSPAN31 (ENSEASG00005033639) #23	AGAP2 (ENSEASG00005007244) #24	OS9 (ENSEASG00005007240) #25	B4GALNT1 (ENSEASG00005007237) #26	ENSEASG00005033455 #27	ARHGEF25 (ENSEASG00005007226) #28	DTX3 (ENSEASG00005007224) #29	PIP4K2C (ENSEASG00005007222) #30	KIF5A (ENSEASG00005007219) #31	ENSEASG00005034175	DCTN2 (ENSEASG00005007217) #32	MBD6 (ENSEASG00005007215) #33	DDIT3 (ENSEASG00005007212) #34	MARS1 (ENSEASG00005007208) #35	ARHGAP9 (ENSEASG00005007170) #36
Horse	MODERN SPECIES	27	USP15 (ENSECAG00000022494) #7	TAFA2 (ENSECAG00000022465) #9	TAFA2 (ENSECAG00000057416) #9	ENSECAG00000000947	ENSECAG00000044713	ENSECAG00000052567 #11	SLC16A7 (ENSECAG00000021778) #11	LRIG3 (ENSECAG00000020312) #12	ATP23 (ENSECAG00000019876) #14	CTDSP2 (ENSECAG00000018788) #15	AVIL (ENSECAG00000013528) #16	METTL1 (ENSECAG00000009016) #19	TSFM (ENSECAG00000010520) #17	CYP27B1 (ENSECAG00000025143) #20	MARCHF9 (ENSECAG00000025138) #21	CDK4 (ENSECAG00000025015) #22	TSPAN31 (ENSECAG00000024982) #23	ENSECAG00000057561	AGAP2 (ENSECAG00000023952) #24	OS9 (ENSECAG00000022388) #25	B4GALNT1 (ENSECAG00000021591) #26	ENSECAG00000038087	SLC26A10 (ENSECAG00000019756) #27	ARHGEF25 (ENSECAG00000017139) #28	DTX3 (ENSECAG00000015476) #29	PIP4K2C (ENSECAG00000013449) #30	KIF5A (ENSECAG00000006866) #31	DCTN2 (ENSECAG00000022334) #32	MBD6 (ENSECAG00000021290) #33	DDIT3 (ENSECAG00000020535) #34	MARS1 (ENSECAG00000015175) #35
Carnivora	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Caniformia	ANCESTRAL SPECIES	20	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Canidae	ANCESTRAL SPECIES	44	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00990000212294	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427.r #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	40	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00990000212294	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.hb #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427.r #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Dog	MODERN SPECIES	1	AVPR1A (ENSCAFG00845009998)	PPM1H (ENSCAFG00845009918)	MON2 (ENSCAFG00845008650)	ENSCAFG00845008093	USP15 (ENSCAFG00845007973) #7	TAFA2 (ENSCAFG00845007686) #9	SLC16A7 (ENSCAFG00845007615) #11	LRIG3 (ENSCAFG00845007378) #12	ATP23 (ENSCAFG00845007289) #14	CTDSP2 (ENSCAFG00845007174) #15	AVIL (ENSCAFG00845007079) #16	TSFM (ENSCAFG00845006879) #17	METTL1 (ENSCAFG00845013929) #19	CYP27B1 (ENSCAFG00845013886) #20	MARCHF9 (ENSCAFG00845013862) #21	CDK4 (ENSCAFG00845013840) #22	TSPAN31 (ENSCAFG00845013788) #23	AGAP2 (ENSCAFG00845013648) #24	ENSCAFG00845013582	OS9 (ENSCAFG00845013454) #25	B4GALNT1 (ENSCAFG00845013319) #26	ENSCAFG00845013288	SLC26A10 (ENSCAFG00845013204) #27	ARHGEF25 (ENSCAFG00845013035) #28	DTX3 (ENSCAFG00845012960) #29	PIP4K2C (ENSCAFG00845012895) #30	KIF5A (ENSCAFG00845012531) #31	DCTN2 (ENSCAFG00845012256) #32	MBD6 (ENSCAFG00845012134) #33	DDIT3 (ENSCAFG00845012093) #34	MARS1 (ENSCAFG00845012016) #35
Dingo	MODERN SPECIES	374	PPM1H (ENSCAFG00020019573)	MON2 (ENSCAFG00020019669)	USP15 (ENSCAFG00020022368) #7	ENSCAFG00020022377 #9	SLC16A7 (ENSCAFG00020022381) #11	LRIG3 (ENSCAFG00020022387) #12	ENSCAFG00020022402	ATP23 (ENSCAFG00020022403) #14	CTDSP2 (ENSCAFG00020022405) #15	AVIL (ENSCAFG00020022432) #16	TSFM (ENSCAFG00020022844) #17	EEF1AKMT3 (ENSCAFG00020022845) #18	METTL1 (ENSCAFG00020022852) #19	CYP27B1 (ENSCAFG00020022855) #20	MARCHF9 (ENSCAFG00020022859) #21	ENSCAFG00020022861 #22	TSPAN31 (ENSCAFG00020022882) #23	AGAP2 (ENSCAFG00020022888) #24	OS9 (ENSCAFG00020022924) #25	B4GALNT1 (ENSCAFG00020022927) #26	ENSCAFG00020022934	ENSCAFG00020022937	ENSCAFG00020022938	ARHGEF25 (ENSCAFG00020022944) #28	DTX3 (ENSCAFG00020022956) #29	PIP4K2C (ENSCAFG00020022961) #30	KIF5A (ENSCAFG00020023042) #31	ENSCAFG00020023629 #32	MBD6 (ENSCAFG00020023648) #33	DDIT3 (ENSCAFG00020023658) #34	MARS1 (ENSCAFG00020023661) #35
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00730000111184	ENSGT00940000155973.b	ENSGT00940000155927	ENSGT00510000047351.b	ENSGT00440000038603.j	ENSGT00940000158467	ENSGT00940000157467	ENSGT00940000158122	ENSGT00940000155316	ENSGT00940000162999	ENSGT00940000156432.a	ENSGT01090000260118.k	ENSGT00390000013075.b	ENSGT00940000156323	ENSGT00530000063614.a.b	ENSGT00940000154770.ib #22	ENSGT00490000043413	ENSGT00940000155905.a.d	ENSGT00940000155128.a.b	ENSGT00950000183040.A.b	ENSGT00940000160195.b.b	ENSGT00390000016183	ENSGT00390000008828.k.a	ENSGT00940000154986	ENSGT00950000183198.c.b.b.g.a.a	ENSGT00390000016644	ENSGT00950000182936.a.a.b	ENSGT00940000160791.A	ENSGT00940000155694	ENSGT00390000018433.s.a.a.e.b	ENSGT00940000162325.B.l
Dog	MODERN SPECIES	6	MAP9 (ENSCAFG00845010211)	NPY2R (ENSCAFG00845010147)	RBM46 (ENSCAFG00845010074)	LRAT (ENSCAFG00845010027)	ENSCAFG00845009958	FGG (ENSCAFG00845009858)	ENSCAFG00845009752	FGB (ENSCAFG00845009700)	PLRG1 (ENSCAFG00845009646)	ENSCAFG00845009626	DCHS2 (ENSCAFG00845009547)	SFRP2 (ENSCAFG00845009450)	RNF175 (ENSCAFG00845009415)	TLR2 (ENSCAFG00845009391)	TMEM131L (ENSCAFG00845009147)	ENSCAFG00845009098 #22	ENSCAFG00845009081	TRIM2 (ENSCAFG00845008493)	FHDC1 (ENSCAFG00845008193)	ENSCAFG00845008099	ARFIP1 (ENSCAFG00845007940)	TIGD4 (ENSCAFG00845007856)	TMEM154 (ENSCAFG00845007673)	ENSCAFG00845007288	FBXW7 (ENSCAFG00845007020)	ENSCAFG00845006957	GATB (ENSCAFG00845006707)	ATP5J2 (ENSCAFG00845006554)	FAM160A1 (ENSCAFG00845006461)	ENSCAFG00845006404	PRSS48 (ENSCAFG00845006205)
Dingo	MODERN SPECIES	277	MAP9 (ENSCAFG00020002483)	RBM46 (ENSCAFG00020002468)	LRAT (ENSCAFG00020002463)	ENSCAFG00020002457	FGG (ENSCAFG00020002432)	ENSCAFG00020002422	ENSCAFG00020002417	FGB (ENSCAFG00020002385)	PLRG1 (ENSCAFG00020002361)	DCHS2 (ENSCAFG00020002344)	SFRP2 (ENSCAFG00020002334)	ENSCAFG00020002333	RNF175 (ENSCAFG00020002322)	TLR2 (ENSCAFG00020002318)	TMEM131L (ENSCAFG00020001730)	ENSCAFG00020001589 #22	ENSCAFG00020001580	MND1 (ENSCAFG00020001543)	TRIM2 (ENSCAFG00020001512)	ENSCAFG00020001503	FHDC1 (ENSCAFG00020001445)	ARFIP1 (ENSCAFG00020001430)	TIGD4 (ENSCAFG00020001422)	ENSCAFG00020026770	ENSCAFG00020026769	FBXW7 (ENSCAFG00020026731)	ENSCAFG00020026719	GATB (ENSCAFG00020026686)	FHIP1A (ENSCAFG00020026678)	ENSCAFG00020026675	PRSS48 (ENSCAFG00020026672)
Red fox	MODERN SPECIES	38	USP15 (ENSVVUG00000015146) #7	FAM19A2 (ENSVVUG00000015161) #9	ENSVVUG00000015170	SLC16A7 (ENSVVUG00000015175) #11	ENSVVUG00000015189	LRIG3 (ENSVVUG00000015192) #12	ENSVVUG00000015204	ATP23 (ENSVVUG00000015207) #14	ENSVVUG00000015212	CTDSP2 (ENSVVUG00000015232) #15	AVIL (ENSVVUG00000015292) #16	TSFM (ENSVVUG00000016735) #17	EEF1AKMT3 (ENSVVUG00000016794) #18	METTL1 (ENSVVUG00000016799) #19	CYP27B1 (ENSVVUG00000016809) #20	CDK4 (ENSVVUG00000016816) #22	TSPAN31 (ENSVVUG00000016824) #23	AGAP2 (ENSVVUG00000016860) #24	OS9 (ENSVVUG00000017059) #25	B4GALNT1 (ENSVVUG00000017068) #26	ENSVVUG00000017075	ENSVVUG00000017078 #27	ENSVVUG00000017087 #27	ARHGEF25 (ENSVVUG00000017093) #28	DTX3 (ENSVVUG00000017112) #29	PIP4K2C (ENSVVUG00000017117) #30	KIF5A (ENSVVUG00000017133) #31	ENSVVUG00000017190 #32	MBD6 (ENSVVUG00000017919) #33	DDIT3 (ENSVVUG00000017933) #34	MARS (ENSVVUG00000017940) #35
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Ursidae	ANCESTRAL SPECIES	13	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00950000185659	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Ursus	ANCESTRAL SPECIES	23	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
American black bear	MODERN SPECIES	2521								ATP23 (ENSUAMG00000013084) #14	CTDSP2 (ENSUAMG00000013085) #15	AVIL (ENSUAMG00000013090) #16	TSFM (ENSUAMG00000013142) #17	EEF1AKMT3 (ENSUAMG00000013145) #18	METTL1 (ENSUAMG00000013150) #19	CYP27B1 (ENSUAMG00000013152) #20	ENSUAMG00000013154 #21	CDK4 (ENSUAMG00000013156) #22	TSPAN31 (ENSUAMG00000013158) #23	AGAP2 (ENSUAMG00000013159) #24
Polar bear	MODERN SPECIES	113	PPM1H (ENSUMAG00000020301)	MON2 (ENSUMAG00000020264)	USP15 (ENSUMAG00000020242) #7	TAFA2 (ENSUMAG00000020227) #9	ENSUMAG00000020208	SLC16A7 (ENSUMAG00000020199) #11	LRIG3 (ENSUMAG00000020180) #12	ATP23 (ENSUMAG00000020165) #14	CTDSP2 (ENSUMAG00000020145) #15	AVIL (ENSUMAG00000020134) #16	TSFM (ENSUMAG00000020123) #17	EEF1AKMT3 (ENSUMAG00000020118) #18	METTL1 (ENSUMAG00000020114) #19	CYP27B1 (ENSUMAG00000020107) #20	ENSUMAG00000020102 #21	CDK4 (ENSUMAG00000020099) #22	TSPAN31 (ENSUMAG00000020092) #23	AGAP2 (ENSUMAG00000020080) #24	OS9 (ENSUMAG00000020070) #25	ENSUMAG00000020063	ENSUMAG00000020057	ENSUMAG00000020053 #27	ARHGEF25 (ENSUMAG00000020041) #28	PIP4K2C (ENSUMAG00000019936) #30	ENSUMAG00000019911	KIF5A (ENSUMAG00000019855) #31	DCTN2 (ENSUMAG00000019840) #32	MBD6 (ENSUMAG00000019835) #33	DDIT3 (ENSUMAG00000019833) #34	MARS1 (ENSUMAG00000019826) #35	ENSUMAG00000019819 #36
Giant Panda	MODERN SPECIES	6	AVPR1A (ENSAMEG00000009779)	PPM1H (ENSAMEG00000009787)	MON2 (ENSAMEG00000009821)	USP15 (ENSAMEG00000009899) #7	TAFA2 (ENSAMEG00000010005) #9	SLC16A7 (ENSAMEG00000009572) #11	LRIG3 (ENSAMEG00000005565) #12	ATP23 (ENSAMEG00000031362) #14	CTDSP2 (ENSAMEG00000005522) #15	AVIL (ENSAMEG00000005465) #16	TSFM (ENSAMEG00000005452) #17	EEF1AKMT3 (ENSAMEG00000030028) #18	METTL1 (ENSAMEG00000005428) #19	CYP27B1 (ENSAMEG00000005368) #20	MARCHF9 (ENSAMEG00000005329) #21	CDK4 (ENSAMEG00000005351) #22	TSPAN31 (ENSAMEG00000005333) #23	AGAP2 (ENSAMEG00000005291) #24	OS9 (ENSAMEG00000005249) #25	B4GALNT1 (ENSAMEG00000005224) #26	ENSAMEG00000005175 #27	ARHGEF25 (ENSAMEG00000005173) #28	PIP4K2C (ENSAMEG00000005130) #30	KIF5A (ENSAMEG00000005069) #31	DCTN2 (ENSAMEG00000005033) #32	MBD6 (ENSAMEG00000005029) #33	ENSAMEG00000029681	DDIT3 (ENSAMEG00000005026) #34	MARS1 (ENSAMEG00000004962) #35	ARHGAP9 (ENSAMEG00000004894) #36	GLI1 (ENSAMEG00000004878) #37
Mustelinae	ANCESTRAL SPECIES	61		ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
American mink	MODERN SPECIES	76	USP15 (ENSNVIG00000003758) #7	ENSNVIG00000003727	F19A2 (ENSNVIG00000003692) #9	ENSNVIG00000003659	MOT2 (ENSNVIG00000003620) #11	ENSNVIG00000003587	LRIG3 (ENSNVIG00000003547) #12	ATP23 (ENSNVIG00000003528) #14	CTDS2 (ENSNVIG00000003498) #15	AVIL (ENSNVIG00000003479) #16	EFTS (ENSNVIG00000003421) #17	EEF1AKMT3 (ENSNVIG00000003404) #18	METTL1 (ENSNVIG00000003365) #19	CYP27B1 (ENSNVIG00000003343) #20	ENSNVIG00000003332 #21	CDK4 (ENSNVIG00000003287) #22	TSPAN31 (ENSNVIG00000003248) #23	AGAP2 (ENSNVIG00000003143) #24	OS9 (ENSNVIG00000002785) #25	B4GALNT1 (ENSNVIG00000002697) #26	ENSNVIG00000002655 #27	ARHGEF25 (ENSNVIG00000002561) #28	DTX3 (ENSNVIG00000002530) #29	PIP4K2C (ENSNVIG00000002463) #30	KIF5A (ENSNVIG00000002356) #31	DCTN2 (ENSNVIG00000002231) #32	MBD6 (ENSNVIG00000002218) #33	DDIT3 (ENSNVIG00000002208) #34	MARS1 (ENSNVIG00000002142) #35	ARHGAP9 (ENSNVIG00000002074) #36	GLI1 (ENSNVIG00000002001) #37
Ferret	MODERN SPECIES	340				SLC16A7 (ENSMPUG00000002081) #11	ENSMPUG00000002078	LRIG3 (ENSMPUG00000002071) #12	ENSMPUG00000018502	ENSMPUG00000002069 #14	CTDSP2 (ENSMPUG00000002064) #15	AVIL (ENSMPUG00000002056) #16	TSFM (ENSMPUG00000002051) #17	EEF1AKMT3 (ENSMPUG00000002048) #18	METTL1 (ENSMPUG00000002046) #19	CYP27B1 (ENSMPUG00000002045) #20	MARCHF9 (ENSMPUG00000002037) #21	CDK4 (ENSMPUG00000002016) #22	TSPAN31 (ENSMPUG00000002004) #23	AGAP2 (ENSMPUG00000002000) #24	OS9 (ENSMPUG00000001997) #25	B4GALNT1 (ENSMPUG00000001960) #26	ENSMPUG00000001927 #27	ARHGEF25 (ENSMPUG00000001923) #28	DTX3 (ENSMPUG00000001912) #29	PIP4K2C (ENSMPUG00000001852) #30	KIF5A (ENSMPUG00000001843) #31	DCTN2 (ENSMPUG00000001840) #32	MBD6 (ENSMPUG00000001837) #33	DDIT3 (ENSMPUG00000001835) #34	MARS1 (ENSMPUG00000001831) #35	ARHGAP9 (ENSMPUG00000001827) #36	GLI1 (ENSMPUG00000001825) #37
Felidae	ANCESTRAL SPECIES	2	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Panthera	ANCESTRAL SPECIES		ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Panthera_a	ANCESTRAL SPECIES	12	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00910000147433	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
lion	MODERN SPECIES	7	AVPR1A (ENSPLOG00000010693)	PPM1H (ENSPLOG00000010670)	MON2 (ENSPLOG00000009437)	USP15 (ENSPLOG00000009055) #7	TAFA2 (ENSPLOG00000008909) #9	SLC16A7 (ENSPLOG00000008868) #11	LRIG3 (ENSPLOG00000008745) #12	ATP23 (ENSPLOG00000008681) #14	CTDSP2 (ENSPLOG00000008613) #15	AVIL (ENSPLOG00000008566) #16	TSFM (ENSPLOG00000008446) #17	EEF1AKMT3 (ENSPLOG00000008400) #18	METTL1 (ENSPLOG00000008356) #19	CYP27B1 (ENSPLOG00000008308) #20	MARCHF9 (ENSPLOG00000008278) #21	CDK4 (ENSPLOG00000008199) #22	TSPAN31 (ENSPLOG00000008114) #23	AGAP2 (ENSPLOG00000007859) #24	OS9 (ENSPLOG00000007742) #25	B4GALNT1 (ENSPLOG00000007584) #26	ENSPLOG00000007537	ENSPLOG00000007489 #27	ENSPLOG00000007432 #27	ARHGEF25 (ENSPLOG00000007298) #28	DTX3 (ENSPLOG00000007230) #29	PIP4K2C (ENSPLOG00000007188) #30	KIF5A (ENSPLOG00000006976) #31	DCTN2 (ENSPLOG00000006877) #32	MBD6 (ENSPLOG00000006805) #33	ENSPLOG00000006782	DDIT3 (ENSPLOG00000006761) #34
leopard	MODERN SPECIES	27	MON2 (ENSPPRG00000000598)	USP15 (ENSPPRG00000001415) #7	TAFA2 (ENSPPRG00000002926) #9	ENSPPRG00000017098	ENSPPRG00000003806	SLC16A7 (ENSPPRG00000004556) #11	LRIG3 (ENSPPRG00000005844) #12	ATP23 (ENSPPRG00000006940) #14	CTDSP2 (ENSPPRG00000007688) #15	AVIL (ENSPPRG00000008022) #16	TSFM (ENSPPRG00000009667) #17	EEF1AKMT3 (ENSPPRG00000010386) #18	METTL1 (ENSPPRG00000011095) #19	CYP27B1 (ENSPPRG00000011671) #20	MARCHF9 (ENSPPRG00000012795) #21	CDK4 (ENSPPRG00000013706) #22	TSPAN31 (ENSPPRG00000016645) #23	AGAP2 (ENSPPRG00000018437) #24	OS9 (ENSPPRG00000000870) #25	B4GALNT1 (ENSPPRG00000002321) #26	ENSPPRG00000002448	ENSPPRG00000003343 #27	ARHGEF25 (ENSPPRG00000004548) #28	DTX3 (ENSPPRG00000005051) #29	PIP4K2C (ENSPPRG00000007115) #30	ENSPPRG00000007974	KIF5A (ENSPPRG00000011745) #31	DCTN2 (ENSPPRG00000015041) #32	MBD6 (ENSPPRG00000016575) #33	DDIT3 (ENSPPRG00000019481) #34	MARS1 (ENSPPRG00000023243) #35
Tiger	DUPLICATION
Tiger	MODERN SPECIES	49	ENSPTIG00000013132	ENSPTIG00000012948	MON2 (ENSPTIG00000017684)	USP15 (ENSPTIG00000013880) #7	TAFA2 (ENSPTIG00000012544) #9	SLC16A7 (ENSPTIG00000009030) #11	LRIG3 (ENSPTIG00000003117) #12	ATP23 (ENSPTIG00000019889) #14	CTDSP2 (ENSPTIG00000018749) #15	AVIL (ENSPTIG00000018340) #16	TSFM (ENSPTIG00000015290) #17	EEF1AKMT3 (ENSPTIG00000013367) #18	METTL1 (ENSPTIG00000012709) #19	CYP27B1 (ENSPTIG00000012402) #20	MARCHF9 (ENSPTIG00000012228) #21	CDK4 (ENSPTIG00000010434) #22	TSPAN31 (ENSPTIG00000008745) #23	AGAP2 (ENSPTIG00000006997) #24	OS9 (ENSPTIG00000012339) #25	B4GALNT1 (ENSPTIG00000010142) #26	ARHGEF25 (ENSPTIG00000000381) #28	DTX3 (ENSPTIG00000019850) #29	PIP4K2C (ENSPTIG00000017041) #30	ENSPTIG00000016848	KIF5A (ENSPTIG00000013721) #31	DCTN2 (ENSPTIG00000010316) #32	MBD6 (ENSPTIG00000009087) #33	DDIT3 (ENSPTIG00000008446) #34	MARS1 (ENSPTIG00000006721) #35	ARHGAP9 (ENSPTIG00000021066) #36	GLI1 (ENSPTIG00000020218) #37
Tiger	MODERN SPECIES	596	ENSPTIG00000006588	ASAH1 (ENSPTIG00000013668)	PCM1 (ENSPTIG00000010658)	FGL1 (ENSPTIG00000007690)	ENSPTIG00000002418	PDGFRL (ENSPTIG00000020603)	SLC7A2 (ENSPTIG00000016705)	MTMR7 (ENSPTIG00000014947)	VPS37A (ENSPTIG00000013167)	CNOT7 (ENSPTIG00000012243)	ZDHHC2 (ENSPTIG00000009839)	MICU3 (ENSPTIG00000007122)	FGF20 (ENSPTIG00000006526)	MSR1 (ENSPTIG00000004308)	TUSC3 (ENSPTIG00000021314)	ENSPTIG00000020356 #22	ENSPTIG00000019512
Cat	DUPLICATION
Cat	MODERN SPECIES	238	ENSFCAG00000034317	MON2 (ENSFCAG00000023896)	USP15 (ENSFCAG00000018475) #7	TAFA2 (ENSFCAG00000014482) #9	ENSFCAG00000048816	SLC16A7 (ENSFCAG00000029220) #11	LRIG3 (ENSFCAG00000006634) #12	ATP23 (ENSFCAG00000030243) #14	CTDSP2 (ENSFCAG00000026269) #15	AVIL (ENSFCAG00000014708) #16	TSFM (ENSFCAG00000023794) #17	EEF1AKMT3 (ENSFCAG00000032966) #18	METTL1 (ENSFCAG00000032363) #19	CYP27B1 (ENSFCAG00000014701) #20	MARCHF9 (ENSFCAG00000045499) #21	CDK4 (ENSFCAG00000029663) #22	TSPAN31 (ENSFCAG00000026400) #23	AGAP2 (ENSFCAG00000014695) #24	OS9 (ENSFCAG00000014691) #25	SLC26A10 (ENSFCAG00000030779) #27	ARHGEF25 (ENSFCAG00000002089) #28	B4GALNT1 (ENSFCAG00000002090) #26	DTX3 (ENSFCAG00000002088) #29	PIP4K2C (ENSFCAG00000030052) #30	KIF5A (ENSFCAG00000002087) #31	DCTN2 (ENSFCAG00000002086) #32	MBD6 (ENSFCAG00000030572) #33	ENSFCAG00000052285	DDIT3 (ENSFCAG00000002084) #34	MARS1 (ENSFCAG00000002083) #35	ARHGAP9 (ENSFCAG00000002082) #36
Cat	MODERN SPECIES	235	ASAH1 (ENSFCAG00000015500)	PCM1 (ENSFCAG00000000496)	FGL1 (ENSFCAG00000000427)	MTUS1 (ENSFCAG00000030128)	PDGFRL (ENSFCAG00000011886)	SLC7A2 (ENSFCAG00000019317)	MTMR7 (ENSFCAG00000011961)	VPS37A (ENSFCAG00000034875)	CNOT7 (ENSFCAG00000000591)	ZDHHC2 (ENSFCAG00000000587)	MICU3 (ENSFCAG00000018279)	FGF20 (ENSFCAG00000044185)	MSR1 (ENSFCAG00000006956)	TUSC3 (ENSFCAG00000033222)	SGCZ (ENSFCAG00000022854)	ENSFCAG00000039692 #22	CB1H8orf48 (ENSFCAG00000000868)	DLC1 (ENSFCAG00000015432)	TRMT9B (ENSFCAG00000041381)	LONRF1 (ENSFCAG00000029044)	PRAG1 (ENSFCAG00000005333)	CLDN23 (ENSFCAG00000042422)	ENSFCAG00000049353	MFHAS1 (ENSFCAG00000022083)	ERI1 (ENSFCAG00000029808)	PPP1R3B (ENSFCAG00000040845)	TNKS (ENSFCAG00000008484)	DUSP4 (ENSFCAG00000028649)	ENSFCAG00000032179	SARAF (ENSFCAG00000037236)	LEPROTL1 (ENSFCAG00000035274)
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Suina	ANCESTRAL SPECIES	4	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Pig	MODERN SPECIES	13	MON2 (ENSSSCG00000000458)	USP15 (ENSSSCG00000000457) #7	TAFA2 (ENSSSCG00000034686) #9	ENSSSCG00000044956	ENSSSCG00000043593	SLC16A7 (ENSSSCG00000000456) #11	LRIG3 (ENSSSCG00000000455) #12	ATP23 (ENSSSCG00000000453) #14	CTDSP2 (ENSSSCG00000031707) #15	AVIL (ENSSSCG00000029571) #16	TSFM (ENSSSCG00000037767) #17	EEF1AKMT3 (ENSSSCG00000037619) #18	METTL1 (ENSSSCG00000061324) #19	CYP27B1 (ENSSSCG00000028637) #20	MARCHF9 (ENSSSCG00000033013) #21	CDK4 (ENSSSCG00000025092) #22	TSPAN31 (ENSSSCG00000036731) #23	AGAP2 (ENSSSCG00000038732) #24	OS9 (ENSSSCG00000035875) #25	B4GALNT1 (ENSSSCG00000000433) #26	ENSSSCG00000036029 #27	ARHGEF25 (ENSSSCG00000000435) #28	DTX3 (ENSSSCG00000000449) #29	PIP4K2C (ENSSSCG00000000436) #30	KIF5A (ENSSSCG00000000439) #31	DCTN2 (ENSSSCG00000000444) #32	MBD6 (ENSSSCG00000000431) #33	DDIT3 (ENSSSCG00000050998) #34	MARS1 (ENSSSCG00000023318) #35	ARHGAP9 (ENSSSCG00000000437) #36	GLI1 (ENSSSCG00000000443) #37
Chacoan peccary	MODERN SPECIES	901	PPM1H (ENSCWAG00000005461)	MON2 (ENSCWAG00000005547)	ENSCWAG00000005775	USP15 (ENSCWAG00000005802) #7	TAFA2 (ENSCWAG00000005956) #9	SLC16A7 (ENSCWAG00000005999) #11	LRIG3 (ENSCWAG00000006019) #12	ATP23 (ENSCWAG00000006102) #14	CTDSP2 (ENSCWAG00000006133) #15	ENSCWAG00000006163	AVIL (ENSCWAG00000006186) #16	TSFM (ENSCWAG00000006280) #17	EEF1AKMT3 (ENSCWAG00000006344) #18	CYP27B1 (ENSCWAG00000006368) #20	MARCHF9 (ENSCWAG00000006418) #21	CDK4 (ENSCWAG00000006445) #22	TSPAN31 (ENSCWAG00000006495) #23	AGAP2 (ENSCWAG00000006597) #24	OS9 (ENSCWAG00000006797) #25	B4GALNT1 (ENSCWAG00000007129) #26	ENSCWAG00000007347 #27	ARHGEF25 (ENSCWAG00000007404) #28	DTX3 (ENSCWAG00000007547) #29	PIP4K2C (ENSCWAG00000007595) #30	ENSCWAG00000007631 #30	KIF5A (ENSCWAG00000007667) #31	DCTN2 (ENSCWAG00000007899) #32	MBD6 (ENSCWAG00000008082) #33	DDIT3 (ENSCWAG00000008129) #34	MARS1 (ENSCWAG00000008181) #35	ARHGAP9 (ENSCWAG00000008331) #36
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Camelidae	ANCESTRAL SPECIES	76	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Arabian camel	MODERN SPECIES	3	ENSCDRG00005020170	ENSCDRG00005020156	SLC16A7 (ENSCDRG00005020150) #11	LRIG3 (ENSCDRG00005020130) #12	ENSCDRG00005020116	ENSCDRG00005020106	ENSCDRG00005020094	ATP23 (ENSCDRG00005020085) #14	CTDSP2 (ENSCDRG00005020066) #15	AVIL (ENSCDRG00005020042) #16	TSFM (ENSCDRG00005019979) #17	EEF1AKMT3 (ENSCDRG00005019958) #18	METTL1 (ENSCDRG00005019923) #19	CYP27B1 (ENSCDRG00005019909) #20	MARCHF9 (ENSCDRG00005019897) #21	CDK4 (ENSCDRG00005019885) #22	ENSCDRG00005019838 #23	AGAP2 (ENSCDRG00005019817) #24	OS9 (ENSCDRG00005019665) #25	B4GALNT1 (ENSCDRG00005019607) #26	ENSCDRG00005019581 #27	ENSCDRG00005019572 #27	ARHGEF25 (ENSCDRG00005019460) #28	DTX3 (ENSCDRG00005019411) #29	PIP4K2C (ENSCDRG00005019272) #30	KIF5A (ENSCDRG00005019073) #31	DCTN2 (ENSCDRG00005019001) #32	MBD6 (ENSCDRG00005018960) #33	DDIT3 (ENSCDRG00005018924) #34	MARS1 (ENSCDRG00005018613) #35	ARHGAP9 (ENSCDRG00005018474) #36
Alpaca	MODERN SPECIES	554													METTL1 (ENSVPAG00000012594) #19	CYP27B1 (ENSVPAG00000012593) #20	MARCHF9 (ENSVPAG00000012592) #21	ENSVPAG00000012591 #22
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Cetacea	ANCESTRAL SPECIES	8	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Blue whale	MODERN SPECIES	1	TAFA2 (ENSBMSG00010011250) #9	ENSBMSG00010011234	ENSBMSG00010011224	ENSBMSG00010011214	SLC16A7 (ENSBMSG00010011200) #11	ENSBMSG00010011192	LRIG3 (ENSBMSG00010011144) #12	ATP23 (ENSBMSG00010011114) #14	CTDSP2 (ENSBMSG00010011093) #15	AVIL (ENSBMSG00010011051) #16	TSFM (ENSBMSG00010011010) #17	EEF1AKMT3 (ENSBMSG00010010988) #18	METTL1 (ENSBMSG00010010975) #19	CYP27B1 (ENSBMSG00010010958) #20	MARCHF9 (ENSBMSG00010010932) #21	CDK4 (ENSBMSG00010010900) #22	TSPAN31 (ENSBMSG00010010871) #23	AGAP2 (ENSBMSG00010010788) #24	OS9 (ENSBMSG00010010645) #25	B4GALNT1 (ENSBMSG00010010535) #26	ENSBMSG00010010490 #27	ENSBMSG00010010469 #27	ARHGEF25 (ENSBMSG00010010385) #28	DTX3 (ENSBMSG00010010278) #29	ENSBMSG00010010249 #30	KIF5A (ENSBMSG00010010111) #31	DCTN2 (ENSBMSG00010010016) #32	MBD6 (ENSBMSG00010009962) #33	DDIT3 (ENSBMSG00010009923) #34	MARS1 (ENSBMSG00010009884) #35	ARHGAP9 (ENSBMSG00010009452) #36
Odontoceti	ANCESTRAL SPECIES	7	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Sperm whale	MODERN SPECIES	46									CTDSP2 (ENSPCTG00005019848) #15	AVIL (ENSPCTG00005019920) #16	TSFM (ENSPCTG00005020085) #17	EEF1AKMT3 (ENSPCTG00005020201) #18	METTL1 (ENSPCTG00005020233) #19	CYP27B1 (ENSPCTG00005020279) #20	MARCH9 (ENSPCTG00005020339) #21	CDK4 (ENSPCTG00005020378) #22	TSPAN31 (ENSPCTG00005020434) #23	AGAP2 (ENSPCTG00005020523) #24	OS9 (ENSPCTG00005020768) #25
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.nb #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT01010000229988	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.nb #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT01050000248318	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT01010000229988	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.nb #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Narwhal	MODERN SPECIES	313	MON2 (ENSMMNG00015018690)	USP15 (ENSMMNG00015018538) #7	TAFA2 (ENSMMNG00015018477) #9	ENSMMNG00015018466 #11	ENSMMNG00015018450 #11	ENSMMNG00015018435	LRIG3 (ENSMMNG00015018366) #12	ATP23 (ENSMMNG00015018344) #14	CTDSP2 (ENSMMNG00015018319) #15	AVIL (ENSMMNG00015018172) #16	TSFM (ENSMMNG00015018096) #17	EEF1AKMT3 (ENSMMNG00015018051) #18	METTL1 (ENSMMNG00015018009) #19	CYP27B1 (ENSMMNG00015017884) #20	MARCHF9 (ENSMMNG00015017858) #21	ENSMMNG00015017824 #22	TSPAN31 (ENSMMNG00015017754) #23	AGAP2 (ENSMMNG00015017635) #24	OS9 (ENSMMNG00015017419) #25	B4GALNT1 (ENSMMNG00015017261) #26	ENSMMNG00015017200 #27	ARHGEF25 (ENSMMNG00015017116) #28	DTX3 (ENSMMNG00015017050) #29	PIP4K2C (ENSMMNG00015017000) #30	KIF5A (ENSMMNG00015016853) #31	DCTN2 (ENSMMNG00015016787) #32	MBD6 (ENSMMNG00015016740) #33	DDIT3 (ENSMMNG00015016690) #34	MARS1 (ENSMMNG00015016613) #35	ARHGAP9 (ENSMMNG00015016045) #36	GLI1 (ENSMMNG00015015844) #37
Beluga whale	MODERN SPECIES	39	PPM1H (ENSDLEG00000004193)	MON2 (ENSDLEG00000004239)	USP15 (ENSDLEG00000004337) #7	TAFA2 (ENSDLEG00000004402) #9	ENSDLEG00000004411	SLC16A7 (ENSDLEG00000004423) #11	LRIG3 (ENSDLEG00000004440) #12	ATP23 (ENSDLEG00000004474) #14	CTDSP2 (ENSDLEG00000004480) #15	AVIL (ENSDLEG00000004492) #16	TSFM (ENSDLEG00000004504) #17	EEF1AKMT3 (ENSDLEG00000004512) #18	METTL1 (ENSDLEG00000004520) #19	CYP27B1 (ENSDLEG00000004538) #20	MARCH9 (ENSDLEG00000004564) #21	CDK4 (ENSDLEG00000004574) #22	TSPAN31 (ENSDLEG00000004620) #23	AGAP2 (ENSDLEG00000004638) #24	OS9 (ENSDLEG00000004648) #25	B4GALNT1 (ENSDLEG00000004661) #26	ENSDLEG00000004698 #27	ARHGEF25 (ENSDLEG00000004833) #28	DTX3 (ENSDLEG00000005206) #29	PIP4K2C (ENSDLEG00000005214) #30	KIF5A (ENSDLEG00000000912) #31	DCTN2 (ENSDLEG00000002739) #32	MBD6 (ENSDLEG00000002751) #33	DDIT3 (ENSDLEG00000002758) #34	MARS (ENSDLEG00000002765) #35	ARHGAP9 (ENSDLEG00000002814) #36	GLI1 (ENSDLEG00000003010) #37
Vaquita	MODERN SPECIES	1	ENSPSNG00000007082	TAFA2 (ENSPSNG00000007106) #9	ENSPSNG00000007135	SLC16A7 (ENSPSNG00000007175) #11	LRIG3 (ENSPSNG00000007206) #12	ENSPSNG00000007310	ATP23 (ENSPSNG00000007354) #14	CTDSP2 (ENSPSNG00000007395) #15	AVIL (ENSPSNG00000007445) #16	TSFM (ENSPSNG00000007575) #17	ENSPSNG00000007624	ENSPSNG00000007643 #18	METTL1 (ENSPSNG00000007694) #19	CYP27B1 (ENSPSNG00000007710) #20	MARCHF9 (ENSPSNG00000007774) #21	CDK4 (ENSPSNG00000007800) #22	TSPAN31 (ENSPSNG00000007870) #23	AGAP2 (ENSPSNG00000007974) #24	ENSPSNG00000008201	OS9 (ENSPSNG00000008262) #25	B4GALNT1 (ENSPSNG00000008510) #26	ENSPSNG00000008644 #27	ARHGEF25 (ENSPSNG00000008788) #28	DTX3 (ENSPSNG00000008935) #29	PIP4K2C (ENSPSNG00000009182) #30	KIF5A (ENSPSNG00000009018) #31	DCTN2 (ENSPSNG00000009415) #32	MBD6 (ENSPSNG00000009553) #33	DDIT3 (ENSPSNG00000009627) #34	MARS1 (ENSPSNG00000009735) #35	ARHGAP9 (ENSPSNG00000010031) #36
Dolphin	MODERN SPECIES	439									CTDSP2 (ENSTTRG00000008354) #15	AVIL (ENSTTRG00000008353) #16	TSFM (ENSTTRG00000008351) #17	METTL21B (ENSTTRG00000008350) #18	METTL1 (ENSTTRG00000008348) #19	CYP27B1 (ENSTTRG00000008345) #20	MARCHF9 (ENSTTRG00000008344) #21	CDK4 (ENSTTRG00000008343) #22	TSPAN31 (ENSTTRG00000008342) #23	AGAP2 (ENSTTRG00000008341) #24	OS9 (ENSTTRG00000008339) #25
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000154770.ob #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000154770.ob #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00940000154770.ob #22
Narwhal	MODERN SPECIES	308	ENSMMNG00015008097	GJD2 (ENSMMNG00015008064)	ACTC1 (ENSMMNG00015008038)	AQR (ENSMMNG00015007904)	ZNF770 (ENSMMNG00015007882)	ENSMMNG00015007873	DPH6 (ENSMMNG00015007814)	CDIN1 (ENSMMNG00015007765)	ENSMMNG00015007740	MEIS2 (ENSMMNG00015007618)	TMCO5A (ENSMMNG00015007539)	SPRED1 (ENSMMNG00015007482)	FAM98B (ENSMMNG00015007449)	RASGRP1 (ENSMMNG00015007264)	THBS1 (ENSMMNG00015007130)	ENSMMNG00015007108 #22	FSIP1 (ENSMMNG00015007084)	ENSMMNG00015007071	GPR176 (ENSMMNG00015007047)	EIF2AK4 (ENSMMNG00015006962)	ENSMMNG00015006928	BMF (ENSMMNG00015006907)	BUB1B (ENSMMNG00015006887)	PAK6 (ENSMMNG00015006845)	ANKRD63 (ENSMMNG00015006815)	PLCB2 (ENSMMNG00015006734)	INAFM2 (ENSMMNG00015006701)	ENSMMNG00015006679	DISP2 (ENSMMNG00015006652)	KNSTRN (ENSMMNG00015006615)	IVD (ENSMMNG00015006572)
Pecora	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Percora_a	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Siberian musk deer	MODERN SPECIES	1241								ATP23 (ENSMMSG00000016418) #14	ENSMMSG00000016343 #15	AVIL (ENSMMSG00000016181) #16	TSFM (ENSMMSG00000016155) #17	EEF1AKMT3 (ENSMMSG00000016135) #18	METTL1 (ENSMMSG00000016085) #19	CYP27B1 (ENSMMSG00000016052) #20	MARCHF9 (ENSMMSG00000016028) #21	CDK4 (ENSMMSG00000015992) #22	TSPAN31 (ENSMMSG00000015914) #23	AGAP2 (ENSMMSG00000015750) #24	OS9 (ENSMMSG00000015546) #25	B4GALNT1 (ENSMMSG00000015445) #26	ENSMMSG00000015415 #27	ARHGEF25 (ENSMMSG00000015348) #28	DTX3 (ENSMMSG00000015304) #29	PIP4K2C (ENSMMSG00000015252) #30	KIF5A (ENSMMSG00000015037) #31	DCTN2 (ENSMMSG00000014950) #32	MBD6 (ENSMMSG00000014923) #33	DDIT3 (ENSMMSG00000014907) #34	MARS1 (ENSMMSG00000014842) #35	ARHGAP9 (ENSMMSG00000014297) #36	GLI1 (ENSMMSG00000014173) #37
Bovidae	DUPLICATION
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	3	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Caprinae	ANCESTRAL SPECIES		ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36
Goat	MODERN SPECIES	24	MON2 (ENSCHIG00000008433)	USP15 (ENSCHIG00000008519) #7	ENSCHIG00000026265	TAFA2 (ENSCHIG00000021063) #9	SLC16A7 (ENSCHIG00000015717) #11	ENSCHIG00000006801	LRIG3 (ENSCHIG00000023925) #12	ATP23 (ENSCHIG00000026490) #14	CTDSP2 (ENSCHIG00000020341) #15	AVIL (ENSCHIG00000016887) #16	TSFM (ENSCHIG00000013850) #17	EEF1AKMT3 (ENSCHIG00000009456) #18	METTL1 (ENSCHIG00000015867) #19	CYP27B1 (ENSCHIG00000010214) #20	MARCHF9 (ENSCHIG00000026496) #21	CDK4 (ENSCHIG00000020575) #22	TSPAN31 (ENSCHIG00000014754) #23	AGAP2 (ENSCHIG00000000522) #24	OS9 (ENSCHIG00000024824) #25	ENSCHIG00000011902	B4GALNT1 (ENSCHIG00000026781) #26	ENSCHIG00000012447 #27	ARHGEF25 (ENSCHIG00000001591) #28	DTX3 (ENSCHIG00000017813) #29	PIP4K2C (ENSCHIG00000010259) #30	KIF5A (ENSCHIG00000015115) #31	ENSCHIG00000023881	DCTN2 (ENSCHIG00000021509) #32	MBD6 (ENSCHIG00000017594) #33	DDIT3 (ENSCHIG00000011897) #34	MARS1 (ENSCHIG00000027023) #35
Rambouillet Sheep	MODERN SPECIES	19	USP15 (ENSOARG00020017904) #7	ENSOARG00020018826	TAFA2 (ENSOARG00020018860) #9	ENSOARG00020018909	SLC16A7 (ENSOARG00020018995) #11	ENSOARG00020019093	LRIG3 (ENSOARG00020019130) #12	ATP23 (ENSOARG00020019439) #14	CTDSP2 (ENSOARG00020019613) #15	AVIL (ENSOARG00020019683) #16	TSFM (ENSOARG00020019779) #17	EEF1AKMT3 (ENSOARG00020019841) #18	METTL1 (ENSOARG00020000098) #19	CYP27B1 (ENSOARG00020000126) #20	MARCHF9 (ENSOARG00020000135) #21	CDK4 (ENSOARG00020000149) #22	TSPAN31 (ENSOARG00020000196) #23	AGAP2 (ENSOARG00020000269) #24	OS9 (ENSOARG00020000439) #25	ENSOARG00020000589	B4GALNT1 (ENSOARG00020000620) #26	ENSOARG00020000696 #27	ARHGEF25 (ENSOARG00020000777) #28	DTX3 (ENSOARG00020000880) #29	PIP4K2C (ENSOARG00020000907) #30	KIF5A (ENSOARG00020001004) #31	ENSOARG00020001125	DCTN2 (ENSOARG00020001160) #32	MBD6 (ENSOARG00020001220) #33	DDIT3 (ENSOARG00020001256) #34	MARS1 (ENSOARG00020001285) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000007067.d	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34
Bos	ANCESTRAL SPECIES	2	ENSGT00390000013286	ENSGT01100000263480.a.b.b.a.b.b.b.b.a.a.a.b.a.b	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000172584	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000007067.d	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000247135	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000013286	ENSGT01100000263480.a.b.b.a.b.b.b.b.a.a.a.b.a.b	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000172584	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000007067.d	ENSGT00390000018829.g.b.f	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000247135	ENSGT00860000136110	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Hybrid Bos Indicus	MODERN SPECIES	24	USP15 (ENSBIXG00005010678) #7	TAFA2 (ENSBIXG00005010745) #9	ENSBIXG00005010807	SLC16A7 (ENSBIXG00005006201) #11	ENSBIXG00005010869	ENSBIXG00005010884	LRIG3 (ENSBIXG00005010909) #12	ATP23 (ENSBIXG00005000591) #14	CTDSP2 (ENSBIXG00005010976) #15	AVIL (ENSBIXG00005011032) #16	TSFM (ENSBIXG00005007259) #17	EEF1AKMT3 (ENSBIXG00005011058) #18	METTL1 (ENSBIXG00005011085) #19	CYP27B1 (ENSBIXG00005001020) #20	MARCHF9 (ENSBIXG00005007471) #21	ENSBIXG00005011149 #22	TSPAN31 (ENSBIXG00005011215) #23	AGAP2 (ENSBIXG00005011340) #24	OS9 (ENSBIXG00005000446) #25	ENSBIXG00005011555	ENSBIXG00005011576	B4GALNT1 (ENSBIXG00005011641) #26	ENSBIXG00005011668 #27	ARHGEF25 (ENSBIXG00005011722) #28	DTX3 (ENSBIXG00005011818) #29	PIP4K2C (ENSBIXG00005007525) #30	ENSBIXG00005011895	KIF5A (ENSBIXG00005011992) #31	DCTN2 (ENSBIXG00005012044) #32	MBD6 (ENSBIXG00005012082) #33	DDIT3 (ENSBIXG00005012115) #34
Cow	MODERN SPECIES	24	TAFA2 (ENSBTAG00000047818) #9	ENSBTAG00000040344	SLC16A7 (ENSBTAG00000021287) #11	ENSBTAG00000055198	ENSBTAG00000053531	ENSBTAG00000055101	LRIG3 (ENSBTAG00000002227) #12	ATP23 (ENSBTAG00000017543) #14	CTDSP2 (ENSBTAG00000016508) #15	AVIL (ENSBTAG00000016913) #16	TSFM (ENSBTAG00000016912) #17	EEF1AKMT3 (ENSBTAG00000016910) #18	METTL1 (ENSBTAG00000016908) #19	CYP27B1 (ENSBTAG00000016906) #20	MARCHF9 (ENSBTAG00000016904) #21	CDK4 (ENSBTAG00000007160) #22	TSPAN31 (ENSBTAG00000007158) #23	AGAP2 (ENSBTAG00000007156) #24	OS9 (ENSBTAG00000007152) #25	ENSBTAG00000050652	ENSBTAG00000049386	B4GALNT1 (ENSBTAG00000004494) #26	SLC26A10 (ENSBTAG00000023289) #27	ARHGEF25 (ENSBTAG00000018003) #28	DTX3 (ENSBTAG00000018002) #29	PIP4K2C (ENSBTAG00000003942) #30	ENSBTAG00000051574	KIF5A (ENSBTAG00000021336) #31	ENSBTAG00000051593	DCTN2 (ENSBTAG00000010624) #32	MBD6 (ENSBTAG00000010616) #33
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000013286	ENSGT01100000263480.a.b.b.a.b.b.b.b.a.a.a.b.a.b	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000172584	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770.pb.a #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000007067.d	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT01050000247135	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049
Wild yak	MODERN SPECIES	1313									CTDSP2 (ENSBMUG00000025407) #15	AVIL (ENSBMUG00000025413) #16	TSFM (ENSBMUG00000025418) #17	EEF1AKMT3 (ENSBMUG00000025422) #18	METTL1 (ENSBMUG00000025424) #19	CYP27B1 (ENSBMUG00000025429) #20	MARCHF9 (ENSBMUG00000025432) #21	ENSBMUG00000025436 #22	TSPAN31 (ENSBMUG00000025443) #23	AGAP2 (ENSBMUG00000025447) #24	OS9 (ENSBMUG00000025480) #25	ENSBMUG00000025488	B4GALNT1 (ENSBMUG00000025492) #26	ENSBMUG00000025498 #27	ARHGEF25 (ENSBMUG00000025517) #28	DTX3 (ENSBMUG00000025531) #29	PIP4K2C (ENSBMUG00000025536) #30	ENSBMUG00000025540	KIF5A (ENSBMUG00000025562) #31	ENSBMUG00000025571	DCTN2 (ENSBMUG00000025591) #32	MBD6 (ENSBMUG00000025599) #33	DDIT3 (ENSBMUG00000025611) #34
Domestic yak	MODERN SPECIES	24	TAFA2 (ENSBGRG00000009833) #9	ENSBGRG00000009816	ENSBGRG00000009803	ENSBGRG00000009771	SLC16A7 (ENSBGRG00000009741) #11	LRIG3 (ENSBGRG00000009679) #12	ENSBGRG00000009665	ATP23 (ENSBGRG00000009594) #14	CTDSP2 (ENSBGRG00000009472) #15	AVIL (ENSBGRG00000009300) #16	TSFM (ENSBGRG00000009209) #17	EEF1AKMT3 (ENSBGRG00000009154) #18	METTL1 (ENSBGRG00000009094) #19	CYP27B1 (ENSBGRG00000008987) #20	MARCHF9 (ENSBGRG00000008950) #21	ENSBGRG00000008884 #22	TSPAN31 (ENSBGRG00000008745) #23	AGAP2 (ENSBGRG00000008348) #24	OS9 (ENSBGRG00000007048) #25	SVIP (ENSBGRG00000012196)	B4GALNT1 (ENSBGRG00000011824) #26	ENSBGRG00000011631 #27	ENSBGRG00000011571 #27	ENSBGRG00000011446 #27	ARHGEF25 (ENSBGRG00000009681) #28	DTX3 (ENSBGRG00000009544) #29	PIP4K2C (ENSBGRG00000009271) #30	KIF5A (ENSBGRG00000008731) #31	DCTN2 (ENSBGRG00000008064) #32	MBD6 (ENSBGRG00000008007) #33	ENSBGRG00000007958
American bison	MODERN SPECIES	3043														CYP27B1 (ENSBBBG00000002094) #20	MARCHF9 (ENSBBBG00000002098) #21	ENSBBBG00000011463 #22	TSPAN31 (ENSBBBG00000011496) #23	AGAP2 (ENSBBBG00000002118) #24	OS9 (ENSBBBG00000002166) #25	ENSBBBG00000011735	B4GALNT1 (ENSBBBG00000002179) #26	ENSBBBG00000007880 #27	ENSBBBG00000011770 #27	ARHGEF25 (ENSBBBG00000011821) #28	DTX3 (ENSBBBG00000011836) #29	PIP4K2C (ENSBBBG00000011867) #30	KIF5A (ENSBBBG00000002221) #31	ENSBBBG00000011973 #32	MBD6 (ENSBBBG00000011979) #33	DDIT3 (ENSBBBG00000006839) #34	MARS1 (ENSBBBG00000012001) #35
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b #22
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.a #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.a #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.a #22
Domestic yak	MODERN SPECIES	12																ENSBGRG00000019535 #22	ENSBGRG00000019504	ENSBGRG00000019488	ENSBGRG00000019440	ENSBGRG00000019345	ENSBGRG00000019288	ENSBGRG00000019229	ZNF599 (ENSBGRG00000019082)	ENSBGRG00000018999	ZNF792 (ENSBGRG00000018941)	ENSBGRG00000018925	GRAMD1A (ENSBGRG00000018150)	HPN (ENSBGRG00000017548)	FXYD3 (ENSBGRG00000017097)	LGI4 (ENSBGRG00000016918)	ENSBGRG00000016572
Wild yak	MODERN SPECIES	2536																ENSBMUG00000026696 #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.a #22
Cow	MODERN SPECIES	9	ENSBTAG00000004925	ENSBTAG00000051883	ENSBTAG00000045985	ENSBTAG00000025023	ENSBTAG00000054418	ENSBTAG00000021433	ENSBTAG00000049645	ENSBTAG00000052631	ENSBTAG00000050562	ENSBTAG00000054322	ENSBTAG00000011844	ENSBTAG00000051367	ENSBTAG00000050359	ENSBTAG00000052124	ENSBTAG00000030454	ENSBTAG00000047712 #22	ENSBTAG00000052265	ENSBTAG00000054310	ENSBTAG00000015899	ENSBTAG00000052943	ENSBTAG00000045571 #22	ENSBTAG00000030470	ENSBTAG00000055276	ENSBTAG00000033604	ENSBTAG00000055074	ENSBTAG00000053241	ENSBTAG00000011052	ENSBTAG00000017651	ENSBTAG00000055293	ENSBTAG00000033523	ENSBTAG00000038903
American bison	MODERN SPECIES	2846															ENSBBBG00000019317	ENSBBBG00000019398 #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.b #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154770.pb.b.b #22
Cow	MODERN SPECIES	9	ENSBTAG00000021433	ENSBTAG00000049645	ENSBTAG00000052631	ENSBTAG00000050562	ENSBTAG00000054322	ENSBTAG00000011844	ENSBTAG00000051367	ENSBTAG00000050359	ENSBTAG00000052124	ENSBTAG00000030454	ENSBTAG00000047712 #22	ENSBTAG00000052265	ENSBTAG00000054310	ENSBTAG00000015899	ENSBTAG00000052943	ENSBTAG00000045571 #22	ENSBTAG00000030470	ENSBTAG00000055276	ENSBTAG00000033604	ENSBTAG00000055074	ENSBTAG00000053241	ENSBTAG00000011052	ENSBTAG00000017651	ENSBTAG00000055293	ENSBTAG00000033523	ENSBTAG00000038903	ENSBTAG00000053131	ENSBTAG00000054038	ENSBTAG00000050488	ENSBTAG00000054547	ENSBTAG00000049460
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000154770.qb #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000154770.qb #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000154770.qb #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000154770.qb #22
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	9	ENSBIXG00005007051	ENSBIXG00005017974	ENSBIXG00005017968	ENSBIXG00005017949	ENSBIXG00005017886	ENSBIXG00005017873	ENSBIXG00005017846	ENSBIXG00005017856	ENSBIXG00005017836	ENSBIXG00005017822	ENSBIXG00005017792	ENSBIXG00005017730	ENSBIXG00005017707	ENSBIXG00005017680	ENSBIXG00005017660	ENSBIXG00005005850 #22	ENSBIXG00005017637	ENSBIXG00005017610	ENSBIXG00005017594	ENSBIXG00005007560 #22	ENSBIXG00005017558	ENSBIXG00005017551	ENSBIXG00005017545	ENSBIXG00005017529	ENSBIXG00005017504	ENSBIXG00005017486	ENSBIXG00005017481	ENSBIXG00005017468	ENSBIXG00005017456	ENSBIXG00005017445	ENSBIXG00005006805
Hybrid Bos Indicus	MODERN SPECIES	9	ENSBIXG00005017886	ENSBIXG00005017873	ENSBIXG00005017846	ENSBIXG00005017856	ENSBIXG00005017836	ENSBIXG00005017822	ENSBIXG00005017792	ENSBIXG00005017730	ENSBIXG00005017707	ENSBIXG00005017680	ENSBIXG00005017660	ENSBIXG00005005850 #22	ENSBIXG00005017637	ENSBIXG00005017610	ENSBIXG00005017594	ENSBIXG00005007560 #22	ENSBIXG00005017558	ENSBIXG00005017551	ENSBIXG00005017545	ENSBIXG00005017529	ENSBIXG00005017504	ENSBIXG00005017486	ENSBIXG00005017481	ENSBIXG00005017468	ENSBIXG00005017456	ENSBIXG00005017445	ENSBIXG00005006805	ENSBIXG00005017421	ENSBIXG00005005652	ENSBIXG00005006931	ENSBIXG00005017373
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	26	WDR75 (ENSCHYG00000025588)	COL5A2 (ENSCHYG00000025742)	COL3A1 (ENSCHYG00000025989)	GULP1 (ENSCHYG00000014958)	ENSCHYG00000015460	TFPI (ENSCHYG00000015517)	CALCRL (ENSCHYG00000015594)	ZSWIM2 (ENSCHYG00000015740)	ITGAV (ENSCHYG00000016186)	ZC3H15 (ENSCHYG00000018042)	FSIP2 (ENSCHYG00000018181)	ENSCHYG00000018267	ENSCHYG00000018238	ENSCHYG00000018320	ZNF804A (ENSCHYG00000018360)	ENSCHYG00000018421 #22	NUP35 (ENSCHYG00000018472)	NCKAP1 (ENSCHYG00000018731)	FRZB (ENSCHYG00000019191)	DNAJC10 (ENSCHYG00000019400)	ENSCHYG00000019967	PDE1A (ENSCHYG00000020015)	PPP1R1C (ENSCHYG00000020631)	ITPRID2 (ENSCHYG00000020772)	NEUROD1 (ENSCHYG00000021265)	CERKL (ENSCHYG00000021285)	ITGA4 (ENSCHYG00000021409)	UBE2E3 (ENSCHYG00000021853)	CWC22 (ENSCHYG00000021944)	ZNF385B (ENSCHYG00000022055)	SESTD1 (ENSCHYG00000022284)
Yarkand deer	MODERN SPECIES	22	TAFA2 (ENSCHYG00000004361) #9	ENSCHYG00000004388	ENSCHYG00000004413	ENSCHYG00000004422	SLC16A7 (ENSCHYG00000004433) #11	LRIG3 (ENSCHYG00000004480) #12	ENSCHYG00000004537	ATP23 (ENSCHYG00000004546) #14	CTDSP2 (ENSCHYG00000000031) #15	AVIL (ENSCHYG00000000049) #16	TSFM (ENSCHYG00000000083) #17	EEF1AKMT3 (ENSCHYG00000000096) #18	METTL1 (ENSCHYG00000000110) #19	CYP27B1 (ENSCHYG00000000128) #20	MARCHF9 (ENSCHYG00000000149) #21	ENSCHYG00000000168 #22	ENSCHYG00000000187 #23	AGAP2 (ENSCHYG00000000224) #24	OS9 (ENSCHYG00000000343) #25	ENSCHYG00000000421	ENSCHYG00000000426	B4GALNT1 (ENSCHYG00000000467) #26	ENSCHYG00000000535 #27	ARHGEF25 (ENSCHYG00000000587) #28	DTX3 (ENSCHYG00000000767) #29	PIP4K2C (ENSCHYG00000000784) #30	KIF5A (ENSCHYG00000000851) #31	ENSCHYG00000001025	DCTN2 (ENSCHYG00000001061) #32	MBD6 (ENSCHYG00000001139) #33	ENSCHYG00000001171
Atlantogenata	ANCESTRAL SPECIES	16	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.f #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Xenarthra	ANCESTRAL SPECIES	111									ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.f #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37	ENSGT00940000162107	ENSGT00940000160065
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	4270									CTDSP2 (ENSDNOG00000012803) #15	AVIL (ENSDNOG00000014284) #16	TSFM (ENSDNOG00000049415) #17	EEF1AKMT3 (ENSDNOG00000017736) #18	METTL1 (ENSDNOG00000042518) #19	CYP27B1 (ENSDNOG00000036581) #20	MARCHF9 (ENSDNOG00000014256) #21	ENSDNOG00000014245 #22	TSPAN31 (ENSDNOG00000039295) #23	AGAP2 (ENSDNOG00000009226) #24	OS9 (ENSDNOG00000014214) #25	ENSDNOG00000043472 #26	ENSDNOG00000046438 #27	ARHGEF25 (ENSDNOG00000012033) #28	KIF5A (ENSDNOG00000017509) #31	DCTN2 (ENSDNOG00000017506) #32	MBD6 (ENSDNOG00000038234) #33	DDIT3 (ENSDNOG00000017504) #34	MARS1 (ENSDNOG00000017502) #35	ARHGAP9 (ENSDNOG00000017510) #36	GLI1 (ENSDNOG00000017512) #37	INHBE (ENSDNOG00000046385)	INHBC (ENSDNOG00000039649)
Armadillo	MODERN SPECIES	4212											ENSDNOG00000034198	ENSDNOG00000041385	ENSDNOG00000034083	NDST4 (ENSDNOG00000019530)	UGT8 (ENSDNOG00000038695)	ENSDNOG00000047795 #22	ARSJ (ENSDNOG00000035175)	ENSDNOG00000038758	ENSDNOG00000033961	ENSDNOG00000032732	ENSDNOG00000036611	ENSDNOG00000042754	LARP7 (ENSDNOG00000013761)	ENSDNOG00000035777	ENSDNOG00000019983	ENSDNOG00000038343	NEUROG2 (ENSDNOG00000010840)	ALPK1 (ENSDNOG00000007641)	TIFA (ENSDNOG00000024369)	AP1AR (ENSDNOG00000035962)	FAM241A (ENSDNOG00000045044)
Sloth	MODERN SPECIES	2813															MARCHF9 (ENSCHOG00000006213) #21	CDK4 (ENSCHOG00000006199) #22
Afrotheria	ANCESTRAL SPECIES	8	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.f #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Afrotheria_a	ANCESTRAL SPECIES	8	ENSGT00390000003526	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A #7	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840.f #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT00950000182860.a.b.a #36	ENSGT00940000160235 #37
Elephant	MODERN SPECIES	196	RXYLT1 (ENSLAFG00000018647)	AVPR1A (ENSLAFG00000006008)	PPM1H (ENSLAFG00000007356)	MON2 (ENSLAFG00000010177)	USP15 (ENSLAFG00000010174) #7	SLC16A7 (ENSLAFG00000016480) #11	LRIG3 (ENSLAFG00000000035) #12	ATP23 (ENSLAFG00000002691) #14	CTDSP2 (ENSLAFG00000010800) #15	AVIL (ENSLAFG00000010796) #16	TSFM (ENSLAFG00000015177) #17	EEF1AKMT3 (ENSLAFG00000023076) #18	METTL1 (ENSLAFG00000010794) #19	CYP27B1 (ENSLAFG00000010789) #20	MARCHF9 (ENSLAFG00000010786) #21	CDK4 (ENSLAFG00000010784) #22	TSPAN31 (ENSLAFG00000025821) #23	AGAP2 (ENSLAFG00000009533) #24	OS9 (ENSLAFG00000013727) #25	ENSLAFG00000020871	B4GALNT1 (ENSLAFG00000023052) #26	ENSLAFG00000031829 #27	ENSLAFG00000027341 #27	ARHGEF25 (ENSLAFG00000013560) #28	DTX3 (ENSLAFG00000032565) #29	PIP4K2C (ENSLAFG00000015355) #30	KIF5A (ENSLAFG00000013547) #31	DCTN2 (ENSLAFG00000013538) #32	MBD6 (ENSLAFG00000013528) #33	DDIT3 (ENSLAFG00000030970) #34	MARS1 (ENSLAFG00000013525) #35
Hyrax	MODERN SPECIES	2545									CTDSP2 (ENSPCAG00000003951) #15	AVIL (ENSPCAG00000003846) #16	TSFM (ENSPCAG00000003789) #17	EEF1AKMT3 (ENSPCAG00000003768) #18	METTL1 (ENSPCAG00000003713) #19	CYP27B1 (ENSPCAG00000003667) #20	MARCHF9 (ENSPCAG00000003646) #21	CDK4 (ENSPCAG00000003601) #22	TSPAN31 (ENSPCAG00000003574) #23	AGAP2 (ENSPCAG00000003480) #24	OS9 (ENSPCAG00000003399) #25
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	3119										CTDSP2 (ENSETEG00000002701) #15	ENSETEG00000002688 #16	ENSETEG00000002686 #17	ENSETEG00000002682 #19	CYP27B1 (ENSETEG00000002680) #20	MARCHF9 (ENSETEG00000002677) #21	ENSETEG00000002672 #22	TSPAN31 (ENSETEG00000002670) #23	AGAP2 (ENSETEG00000002665) #24	OS9 (ENSETEG00000002658) #25
Tenrec	MODERN SPECIES	14907																ENSETEG00000018867 #22
Marsupialia	ANCESTRAL SPECIES	11	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A.f #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A.f #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A.f #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT01050000244882.a.a.a.a	ENSGT00940000160095	ENSGT00390000013286	ENSGT00940000154932.A.f #7	ENSGT00940000161214 #9	ENSGT00940000157309 #11	ENSGT00940000157098 #12	ENSGT00390000010948 #14	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351.u #23	ENSGT00940000158956 #24	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00860000136110	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT01010000223049	ENSGT00390000006305 #34	ENSGT00550000075017 #35
koala	MODERN SPECIES	37	ENSPCIG00000002568 #7	TAFA2 (ENSPCIG00000002513) #9	ENSPCIG00000011242	ENSPCIG00000034196	SLC16A7 (ENSPCIG00000016092) #11	LRIG3 (ENSPCIG00000027382) #12	ENSPCIG00000031980	ATP23 (ENSPCIG00000022436) #14	CTDSP2 (ENSPCIG00000022438) #15	AVIL (ENSPCIG00000022522) #16	ENSPCIG00000023619 #17	EEF1AKMT3 (ENSPCIG00000023625) #18	METTL1 (ENSPCIG00000035859) #19	CYP27B1 (ENSPCIG00000023634) #20	MARCHF9 (ENSPCIG00000023638) #21	CDK4 (ENSPCIG00000023641) #22	ENSPCIG00000023650 #23	AGAP2 (ENSPCIG00000023660) #24	OS9 (ENSPCIG00000023673) #25	B4GALNT1 (ENSPCIG00000023684) #26	ENSPCIG00000023690 #27	ARHGEF25 (ENSPCIG00000023702) #28	DTX3 (ENSPCIG00000023715) #29	PIP4K2C (ENSPCIG00000023719) #30	ENSPCIG00000023748	KIF5A (ENSPCIG00000023724) #31	DCTN2 (ENSPCIG00000023750) #32	MBD6 (ENSPCIG00000035072) #33	ENSPCIG00000033705	DDIT3 (ENSPCIG00000023760) #34	MARS1 (ENSPCIG00000023765) #35
Common wonbat	MODERN SPECIES	682		ENSVURG00010022858	SLC16A7 (ENSVURG00010022863) #11	ENSVURG00010022867	LRIG3 (ENSVURG00010022871) #12	ENSVURG00010022884	ENSVURG00010022887	ATP23 (ENSVURG00010022889) #14	CTDSP2 (ENSVURG00010022893) #15	AVIL (ENSVURG00010022900) #16	TSFM (ENSVURG00010022905) #17	EEF1AKMT3 (ENSVURG00010022913) #18	METTL1 (ENSVURG00010022917) #19	CYP27B1 (ENSVURG00010022922) #20	MARCHF9 (ENSVURG00010022931) #21	CDK4 (ENSVURG00010022937) #22	ENSVURG00010022945 #23	AGAP2 (ENSVURG00010022956) #24	OS9 (ENSVURG00010022976) #25	B4GALNT1 (ENSVURG00010022992) #26	ENSVURG00010023000 #27	ARHGEF25 (ENSVURG00010023020) #28	DTX3 (ENSVURG00010023053) #29	PIP4K2C (ENSVURG00010023060) #30	KIF5A (ENSVURG00010023077) #31	ENSVURG00010023090	DCTN2 (ENSVURG00010023094) #32	MBD6 (ENSVURG00010023098) #33	DDIT3 (ENSVURG00010023101) #34	MARS1 (ENSVURG00010023107) #35	ARHGAP9 (ENSVURG00010023126) #36
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	4131													METTL1 (ENSMEUG00000014634) #19	CYP27B1 (ENSMEUG00000014627) #20	MARCHF9 (ENSMEUG00000014611) #21	ENSMEUG00000014609 #22
Wallaby	MODERN SPECIES	11962																ENSMEUG00000000569 #22
Tasmanian devil	MODERN SPECIES	4	SRGAP1 (ENSSHAG00000004249)	RXYLT1 (ENSSHAG00000028921)	AVPR1A (ENSSHAG00000005512)	PPM1H (ENSSHAG00000027098)	MON2 (ENSSHAG00000013976)	USP15 (ENSSHAG00000012933) #7	SLC16A7 (ENSSHAG00000006917) #11	LRIG3 (ENSSHAG00000005557) #12	ATP23 (ENSSHAG00000010882) #14	AVIL (ENSSHAG00000009744) #16	CTDSP2 (ENSSHAG00000009948) #15	TSFM (ENSSHAG00000009664) #17	EEF1AKMT3 (ENSSHAG00000032211) #18	MARCHF9 (ENSSHAG00000028869) #21	CYP27B1 (ENSSHAG00000009490) #20	CDK4 (ENSSHAG00000009373) #22	AGAP2 (ENSSHAG00000009154) #24	OS9 (ENSSHAG00000008926) #25	B4GALNT1 (ENSSHAG00000008335) #26	ENSSHAG00000024394 #27	DTX3 (ENSSHAG00000022339) #29	ARHGEF25 (ENSSHAG00000025480) #28	KIF5A (ENSSHAG00000007673) #31	PIP4K2C (ENSSHAG00000027181) #30	DCTN2 (ENSSHAG00000027705) #32	MBD6 (ENSSHAG00000007377) #33	DDIT3 (ENSSHAG00000025845) #34	MARS1 (ENSSHAG00000007182) #35	ENSSHAG00000006839 #36	GLI1 (ENSSHAG00000006652) #37	INHBE (ENSSHAG00000006556)
Sauria	ANCESTRAL SPECIES	25	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000160422 #28	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00980000200282	ENSGT00390000003427 #32
Archelosauria	ANCESTRAL SPECIES	26	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00980000200282	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Archosauria	ANCESTRAL SPECIES	33	ENSGT00950000182882.A.a	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00530000063603.A #25	ENSGT01000000215164	ENSGT00390000006679.a #26	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT01070000256145	ENSGT00950000182860.a.b.a #36
Australian saltwater crocodile	MODERN SPECIES	7	ENSCPRG00005004583	PDE1B (ENSCPRG00005004495)	ENSCPRG00005004477	ENSCPRG00005004475	NEUROD4 (ENSCPRG00005004471)	ENDOU (ENSCPRG00005004460)	RAPGEF3 (ENSCPRG00005004445)	SLC48A1 (ENSCPRG00005004421)	ENSCPRG00005004417	HDAC7 (ENSCPRG00005004147)	TSFM (ENSCPRG00005004117) #17	EEF1AKMT3 (ENSCPRG00005004071) #18	METTL1 (ENSCPRG00005004047) #19	CYP27B1 (ENSCPRG00005004041) #20	MARCHF9 (ENSCPRG00005004036) #21	CDK4 (ENSCPRG00005004033) #22	TSPAN31 (ENSCPRG00005004031) #23	ENSCPRG00005004029	AGAP2 (ENSCPRG00005004018) #24	ENSCPRG00005004014	ENSCPRG00005004008 #25	B4GALNT1 (ENSCPRG00005004004) #26	ENSCPRG00005003983	ENSCPRG00005003979	ENSCPRG00005003977	ENSCPRG00005003921	ENSCPRG00005003898	ENSCPRG00005003894	NAALADL1 (ENSCPRG00005003868)	ENSCPRG00005003856	ENSCPRG00005003850
Aves	ANCESTRAL SPECIES	41	ENSGT01030000234528.B.b.a.a.a	ENSGT00950000182882.A.a	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT01070000256145	ENSGT00950000182860.a.b.a #36
Neognathae	ANCESTRAL SPECIES	40	ENSGT00940000160845	ENSGT01030000234528.B.b.a.a.a	ENSGT00950000182882.A.a	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00390000006305 #34	ENSGT00550000075017 #35	ENSGT01070000256145	ENSGT00950000182860.a.b.a #36
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000154770 #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000154770 #22
Great tit	MODERN SPECIES	411																CDK4 (ENSPMJG00000003171) #22
Galloanserae	ANCESTRAL SPECIES	40	ENSGT00940000160845	ENSGT01030000234528.B.b.a.a.a	ENSGT00950000182882.A.a	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000154770 #22	ENSGT00940000160351 #23
Phasianidae	ANCESTRAL SPECIES	25	ENSGT00940000160845	ENSGT01030000234528.B.b.a.a.a	ENSGT00950000182882.A.a	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000154770 #22	ENSGT00940000160351 #23
Japanese quail	MODERN SPECIES	497	SLC4A8 (ENSCJPG00005003729)	GALNT6 (ENSCJPG00005004445)	CELA1 (ENSCJPG00005004446)	BIN2 (ENSCJPG00005004462)	ENSCJPG00005004463	DAZAP2 (ENSCJPG00005004464)	POU6F1 (ENSCJPG00005004466)	TFCP2 (ENSCJPG00005004467)	CSRNP2 (ENSCJPG00005004468)	ENSCJPG00005004469	SLC11A2 (ENSCJPG00005004470)	TSFM (ENSCJPG00005004474) #17	EEF1AKMT3 (ENSCJPG00005004477) #18	METTL1 (ENSCJPG00005004484) #19	CYP27B1 (ENSCJPG00005004485) #20	CDK4 (ENSCJPG00005004487) #22	TSPAN31 (ENSCJPG00005004488) #23	ENSCJPG00005004493	ENSCJPG00005004494	ENSCJPG00005004496	DCTN2 (ENSCJPG00005004546) #32	ENSCJPG00005004548	ENSCJPG00005004551	MARS1 (ENSCJPG00005004552) #35	ENSCJPG00005004554	NDUFA4L2 (ENSCJPG00005004555)	SHMT2 (ENSCJPG00005004556)	NXPH4 (ENSCJPG00005004557)	ENSCJPG00005004558	NAB2 (ENSCJPG00005004561)	NEMP1 (ENSCJPG00005004562)
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000154770 #22
Pink-footed goose	MODERN SPECIES	810																CDK4 (ENSABRG00000008725) #22
Cryptodira	ANCESTRAL SPECIES	25	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00980000200282	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Testudinoidea	ANCESTRAL SPECIES	21	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297.b #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00980000200282	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Emydidae	ANCESTRAL SPECIES	34	ENSGT00390000010077	ENSGT00390000000685	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297.b #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT00950000185610	ENSGT01070000253775.a.d.b #27	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00980000200282	ENSGT00940000159439 #31	ENSGT00390000003427.e #32	ENSGT00390000006305 #34
Three-toed box turtle	MODERN SPECIES	383	BIN2 (ENSTMTG00000003686)	ENSTMTG00000003711	POU6F1 (ENSTMTG00000003737)	TFCP2 (ENSTMTG00000003751)	CSRNP2 (ENSTMTG00000003790)	LETMD1 (ENSTMTG00000003803)	SLC11A2 (ENSTMTG00000003830)	HIGD1C (ENSTMTG00000003901)	CTDSP2 (ENSTMTG00000003925) #15	AVIL (ENSTMTG00000003989) #16	TSFM (ENSTMTG00000004270) #17	EEF1AKMT3 (ENSTMTG00000004286) #18	METTL1 (ENSTMTG00000004293) #19	CYP27B1 (ENSTMTG00000004318) #20	MARCHF9 (ENSTMTG00000004498) #21	CDK4 (ENSTMTG00000004524) #22	TSPAN31 (ENSTMTG00000004550) #23	AGAP2 (ENSTMTG00000004586) #24	ENSTMTG00000004749	OS9 (ENSTMTG00000004767) #25	ENSTMTG00000004807	ENSTMTG00000004837
painted turtle	MODERN SPECIES	2396	SMAGP (ENSCPBG00000018160)	DAZAP2 (ENSCPBG00000018159)	POU6F1 (ENSCPBG00000018158)	TFCP2 (ENSCPBG00000018157)	CSRNP2 (ENSCPBG00000018156)	LETMD1 (ENSCPBG00000018155)	SLC11A2 (ENSCPBG00000018154)	HIGD1C (ENSCPBG00000018153)	CTDSP2 (ENSCPBG00000018151) #15	AVIL (ENSCPBG00000018149) #16	TSFM (ENSCPBG00000018147) #17	ENSCPBG00000018146 #18	ENSCPBG00000018145	METTL1 (ENSCPBG00000018143) #19	CYP27B1 (ENSCPBG00000018042) #20	CDK4 (ENSCPBG00000018041) #22	TSPAN31 (ENSCPBG00000018040) #23	AGAP2 (ENSCPBG00000018031) #24	ENSCPBG00000018030	ENSCPBG00000018028	OS9 (ENSCPBG00000018025) #25	B4GALNT1 (ENSCPBG00000018024) #26	ENSCPBG00000018022	ENSCPBG00000018021 #27	ENSCPBG00000018019	ENSCPBG00000018016	DTX3 (ENSCPBG00000018015) #29	PIP4K2C (ENSCPBG00000018014) #30	ENSCPBG00000018013	KIF5A (ENSCPBG00000017549) #31	DCTN2 (ENSCPBG00000017513) #32
Testudinidae	ANCESTRAL SPECIES	25	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297.b #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000164002.h	ENSGT00940000164002.g	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000154766.a.b	ENSGT00940000161404 #29	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00980000200282	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005016923	DAZAP2 (ENSGEVG00005016950)	POU6F1 (ENSGEVG00005016963)	TFCP2 (ENSGEVG00005016991)	CSRNP2 (ENSGEVG00005017020)	LETMD1 (ENSGEVG00005017040)	SLC11A2 (ENSGEVG00005017070)	HIGD1C (ENSGEVG00005017098)	CTDSP2 (ENSGEVG00005017153) #15	AVIL (ENSGEVG00005017229) #16	TSFM (ENSGEVG00005017507) #17	EEF1AKMT3 (ENSGEVG00005017521) #18	METTL1 (ENSGEVG00005017542) #19	CYP27B1 (ENSGEVG00005017588) #20	MARCHF9 (ENSGEVG00005017849) #21	CDK4 (ENSGEVG00005017889) #22	TSPAN31 (ENSGEVG00005017908) #23	AGAP2 (ENSGEVG00005017968) #24	ENSGEVG00005018225	ENSGEVG00005018249	ENSGEVG00005018277	OS9 (ENSGEVG00005018309) #25	B4GALNT1 (ENSGEVG00005018345) #26	ENSGEVG00005018419 #27	ENSGEVG00005018451	ENSGEVG00005018469	DTX3 (ENSGEVG00005018503) #29	PIP4K2C (ENSGEVG00005018526) #30	KIF5A (ENSGEVG00005018593) #31	ENSGEVG00005018773	DCTN2 (ENSGEVG00005018794) #32
Abingdon island giant tortoise	MODERN SPECIES	1188	ENSCABG00000007383	POU6F1 (ENSCABG00000007384)	TFCP2 (ENSCABG00000007386)	CSRNP2 (ENSCABG00000007387)	ENSCABG00000007388	ENSCABG00000007390	SLC11A2 (ENSCABG00000007391)	HIGD1C (ENSCABG00000007395)	CTDSP2 (ENSCABG00000007397) #15	AVIL (ENSCABG00000007402) #16	TSFM (ENSCABG00000007456) #17	EEF1AKMT3 (ENSCABG00000007461) #18	ENSCABG00000007474 #19	CYP27B1 (ENSCABG00000007477) #20	MARCHF9 (ENSCABG00000007695) #21	CDK4 (ENSCABG00000007696) #22	TSPAN31 (ENSCABG00000007698) #23	ENSCABG00000007699	AGAP2 (ENSCABG00000007700) #24	ENSCABG00000007703
Chinese turtle	MODERN SPECIES	59											TSFM (ENSPSIG00000015776) #17	EEF1AKMT3 (ENSPSIG00000015917) #18	METTL1 (ENSPSIG00000015919) #19	CYP27B1 (ENSPSIG00000015924) #20	MARCHF9 (ENSPSIG00000016207) #21	CDK4 (ENSPSIG00000016537) #22	TSPAN31 (ENSPSIG00000016988) #23	AGAP2 (ENSPSIG00000017661) #24	ENSPSIG00000007095
Lepidosauria	ANCESTRAL SPECIES	68	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24
tuatara	MODERN SPECIES	1253	LRRC23 (ENSSPUG00000014664)	ENO2 (ENSSPUG00000014585)	ATN1 (ENSSPUG00000014541)	PTPN6 (ENSSPUG00000014486)	ENSSPUG00000014474	ENSSPUG00000014471	LPCAT3 (ENSSPUG00000014459)	EMG1 (ENSSPUG00000014446)	ENSSPUG00000014408	C1S (ENSSPUG00000014380)	ENSSPUG00000014359	RBP5 (ENSSPUG00000014352)	CLSTN3 (ENSSPUG00000014315)	ENSSPUG00000014290	PEX5 (ENSSPUG00000014253)	CDK4 (ENSSPUG00000014234) #22	TSPAN31 (ENSSPUG00000014225) #23	ENSSPUG00000014176
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261
Toxicofera	ANCESTRAL SPECIES	19	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261
Lizard	MODERN SPECIES	1	TFCP2 (ENSACAG00000012289)	CSRNP2 (ENSACAG00000012424)	LETMD1 (ENSACAG00000024248)	SLC11A2 (ENSACAG00000012447)	HIGD1C (ENSACAG00000012703)	ENSACAG00000039232	ENSACAG00000035108	CTDSP2 (ENSACAG00000037920) #15	AVIL (ENSACAG00000012787) #16	TSFM (ENSACAG00000013044) #17	EEF1AKMT3 (ENSACAG00000035428) #18	METTL1 (ENSACAG00000013090) #19	CYP27B1 (ENSACAG00000013105) #20	ENSACAG00000038466	MARCHF9 (ENSACAG00000013196) #21	CDK4 (ENSACAG00000044311) #22	ENSACAG00000041945	TSPAN31 (ENSACAG00000042848) #23	ENSACAG00000044688	AGAP2 (ENSACAG00000013313) #24	ENSACAG00000013441	ENSACAG00000013485	ENSACAG00000039566	ENSACAG00000012697	ENSACAG00000038543	ENSACAG00000035468	ENSACAG00000011011	ENSACAG00000010843	ENSACAG00000010781	ENSACAG00000042909	MOB3B (ENSACAG00000010761)
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b
Indian cobra	MODERN SPECIES	1	DAZAP2 (ENSNNAG00000012033)	ENSNNAG00000012042	POU6F1 (ENSNNAG00000012063)	TFCP2 (ENSNNAG00000012088)	CSRNP2 (ENSNNAG00000012121)	LETMD1 (ENSNNAG00000012157)	SLC11A2 (ENSNNAG00000012373)	CTDSP2 (ENSNNAG00000012418) #15	ENSNNAG00000012488	AVIL (ENSNNAG00000006865) #16	TSFM (ENSNNAG00000007025) #17	EEF1AKMT3 (ENSNNAG00000007036) #18	METTL1 (ENSNNAG00000007055) #19	CYP27B1 (ENSNNAG00000007139) #20	MARCHF9 (ENSNNAG00000007575) #21	CDK4 (ENSNNAG00000007706) #22	TSPAN31 (ENSNNAG00000007737) #23	AGAP2 (ENSNNAG00000007813) #24	TMEM106C (ENSNNAG00000008329)	VDR (ENSNNAG00000008474)	MYG1 (ENSNNAG00000008552)	ENSNNAG00000008588	AAAS (ENSNNAG00000008624)	SP7 (ENSNNAG00000008790)	SP1 (ENSNNAG00000008815)	PCBP2 (ENSNNAG00000008863)	MAP3K12 (ENSNNAG00000008985)	ENSNNAG00000009038	TARBP2 (ENSNNAG00000009069)	ENSNNAG00000009151	ATF7 (ENSNNAG00000009169)
Elapidae_a	ANCESTRAL SPECIES	54	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b
Acanthophiinae	ANCESTRAL SPECIES	53	ENSGT00390000010077	ENSGT00390000000685	ENSGT00950000185372	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00940000160885	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00940000155261	ENSGT00940000157981.b
Mainland tiger snake	MODERN SPECIES	90	DAZAP2 (ENSNSUG00000003528)	ENSNSUG00000003527	ENSNSUG00000003526	TFCP2 (ENSNSUG00000003517)	CSRNP2 (ENSNSUG00000003512)	LETMD1 (ENSNSUG00000003506)	SLC11A2 (ENSNSUG00000003504)	ENSNSUG00000003503	CTDSP2 (ENSNSUG00000003501) #15	AVIL (ENSNSUG00000003491) #16	TSFM (ENSNSUG00000003486) #17	EEF1AKMT3 (ENSNSUG00000003482) #18	METTL1 (ENSNSUG00000003465) #19	CYP27B1 (ENSNSUG00000003183) #20	MARCHF9 (ENSNSUG00000003181) #21	CDK4 (ENSNSUG00000003180) #22	TSPAN31 (ENSNSUG00000003179) #23	AGAP2 (ENSNSUG00000003119) #24	TMEM106C (ENSNSUG00000003116)	VDR (ENSNSUG00000003057)	MYG1 (ENSNSUG00000003053)	AAAS (ENSNSUG00000003042)	SP7 (ENSNSUG00000003038)	SP1 (ENSNSUG00000003037)	PCBP2 (ENSNSUG00000003025)	MAP3K12 (ENSNSUG00000003022)	ENSNSUG00000003019	TARBP2 (ENSNSUG00000003015)	ATF7 (ENSNSUG00000002987)	ENSNSUG00000002985	ENSNSUG00000002984
Eastern brown snake	MODERN SPECIES	72	SMAGP (ENSPTXG00000006961)	DAZAP2 (ENSPTXG00000006962)	ENSPTXG00000006964	POU6F1 (ENSPTXG00000006965)	TFCP2 (ENSPTXG00000006967)	CSRNP2 (ENSPTXG00000006969)	LETMD1 (ENSPTXG00000006970)	SLC11A2 (ENSPTXG00000006972)	CTDSP2 (ENSPTXG00000006974) #15	AVIL (ENSPTXG00000006976) #16	TSFM (ENSPTXG00000007010) #17	EEF1AKMT3 (ENSPTXG00000007011) #18	METTL1 (ENSPTXG00000007012) #19	CYP27B1 (ENSPTXG00000007013) #20	MARCHF9 (ENSPTXG00000007139) #21	CDK4 (ENSPTXG00000007140) #22	TSPAN31 (ENSPTXG00000007141) #23	AGAP2 (ENSPTXG00000007142) #24	TMEM106C (ENSPTXG00000007204)	VDR (ENSPTXG00000007205)	MYG1 (ENSPTXG00000007206)	ENSPTXG00000007207	AAAS (ENSPTXG00000007209)	SP7 (ENSPTXG00000007211)	SP1 (ENSPTXG00000007212)	AMHR2 (ENSPTXG00000007213)	PCBP2 (ENSPTXG00000007214)	MAP3K12 (ENSPTXG00000007215)	ENSPTXG00000007216	TARBP2 (ENSPTXG00000007217)	ATF7 (ENSPTXG00000007218)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	7278														ENSLLTG00000012938	MARCHF9 (ENSLLTG00000012949) #21	ENSLLTG00000003199 #22
Blue-lipped sea krait	MODERN SPECIES	9858																ENSLLTG00000017509 #22	TSPAN31 (ENSLLTG00000017507) #23
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000010077	ENSGT00390000000685	ENSGT00940000160106	ENSGT00940000157629	ENSGT00950000183072.b.a	ENSGT00950000183167.a.b.b.b	ENSGT00940000155330	ENSGT00940000162804	ENSGT01040000240451.a.b.a #15	ENSGT00940000159587 #16	ENSGT00390000016293 #17	ENSGT00940000161297 #18	ENSGT00390000017840 #19	ENSGT00950000182905.a.a.b #20	ENSGT00940000158208 #21	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00940000158956 #24	ENSGT00940000161281	ENSGT00940000155473	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00390000009446	ENSGT00940000161293	ENSGT00940000157804	ENSGT00990000209831	ENSGT00940000154129	ENSGT00940000159006	ENSGT00940000157748	ENSGT00390000015021	ENSGT00940000155261
Argentine black and white tegu	MODERN SPECIES	18	AVIL (ENSSMRG00000008618) #16	CTDSP2 (ENSSMRG00000008600) #15	HIGD1C (ENSSMRG00000008599)	SLC11A2 (ENSSMRG00000008590)	LETMD1 (ENSSMRG00000008589)	CSRNP2 (ENSSMRG00000008585)	TFCP2 (ENSSMRG00000008584)	POU6F1 (ENSSMRG00000008583)	DAZAP2 (ENSSMRG00000008571)	SMAGP (ENSSMRG00000008568)	BIN2 (ENSSMRG00000008507)	ENSSMRG00000008505	GALNT6 (ENSSMRG00000008495)	SLC4A8 (ENSSMRG00000008409)	MARCHF9 (ENSSMRG00000008400) #21	CDK4 (ENSSMRG00000008367) #22	TSPAN31 (ENSSMRG00000008366) #23	AGAP2 (ENSSMRG00000003925) #24	TMEM106C (ENSSMRG00000003906)	VDR (ENSSMRG00000003899)	MYG1 (ENSSMRG00000003891)	ENSSMRG00000003885	AAAS (ENSSMRG00000003865)	SP7 (ENSSMRG00000003860)	SP1 (ENSSMRG00000003831)	ENSSMRG00000003771	MAP3K12 (ENSSMRG00000002781)	ENSSMRG00000002730	TARBP2 (ENSSMRG00000002725)	ATF7 (ENSSMRG00000002720)	ENSSMRG00000002669
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000022925	DAZAP2 (ENSPMRG00000022927)	ENSPMRG00000000102	TFCP2 (ENSPMRG00000000152)	CSRNP2 (ENSPMRG00000000255)	LETMD1 (ENSPMRG00000000303)	SLC11A2 (ENSPMRG00000000430)	HIGD1C (ENSPMRG00000000554)	CTDSP2 (ENSPMRG00000000573) #15	AVIL (ENSPMRG00000000618) #16	TSFM (ENSPMRG00000000639) #17	EEF1AKMT3 (ENSPMRG00000000655) #18	METTL1 (ENSPMRG00000000666) #19	CYP27B1 (ENSPMRG00000000676) #20	MARCHF9 (ENSPMRG00000000693) #21	ENSPMRG00000000717 #22	TSPAN31 (ENSPMRG00000000746) #23	AGAP2 (ENSPMRG00000000765) #24	TMEM106C (ENSPMRG00000000798)	ENSPMRG00000000842	ENSPMRG00000000862	ENSPMRG00000000870	ENSPMRG00000000880	VDR (ENSPMRG00000000898)	MYG1 (ENSPMRG00000000915)	ENSPMRG00000000939	AAAS (ENSPMRG00000000973)	SP7 (ENSPMRG00000001076)	ENSPMRG00000001100	ENSPMRG00000001110	SP1 (ENSPMRG00000001129)
Common wall lizard	MODERN SPECIES	266																ENSPMRG00000022202 #22
Anura	ANCESTRAL SPECIES	3	ENSGT00940000161023	ENSGT00940000160794	ENSGT00390000004897	ENSGT00940000158801	ENSGT00950000183123	ENSGT00950000182892.a.a.a	ENSGT00390000004405.a	ENSGT00940000159286.b	ENSGT00940000160876	ENSGT00940000158061	ENSGT00940000156784	ENSGT00940000164745.c.a	ENSGT00390000016619.b	ENSGT00940000160712	ENSGT00940000161232	ENSGT00940000154770 #22	ENSGT00940000160351 #23	ENSGT00530000063825.B	ENSGT00940000158956 #24	ENSGT00940000164002.f	ENSGT00940000164002.e	ENSGT00530000063603.A #25	ENSGT00390000006679.a #26	ENSGT01070000253775.a.d.b #27	ENSGT00940000166618	ENSGT00940000160422 #28	ENSGT00940000156890.a.a #30	ENSGT00940000159439 #31	ENSGT00390000003427 #32	ENSGT00530000064137.a.a #33	ENSGT00390000006305 #34
Frog	MODERN SPECIES	2	xrra1 (ENSXETG00000048051)	spcs2 (ENSXETG00000040068)	ENSXETG00000040711	ENSXETG00000040991	ENSXETG00000045583	ENSXETG00000041808	ENSXETG00000039960	ENSXETG00000041315	ENSXETG00000045206	atg16l2 (ENSXETG00000039418)	ENSXETG00000035409	arrb1 (ENSXETG00000009605)	ENSXETG00000038828	ENSXETG00000045034	ENSXETG00000027192	cdk4 (ENSXETG00000035239) #22	ENSXETG00000047215	ENSXETG00000001428	ENSXETG00000043580	XB5900534 [provisional:or56a5] (ENSXETG00000045559)	ENSXETG00000044557	ENSXETG00000046015	ENSXETG00000047901	ENSXETG00000041986	ENSXETG00000045087	ENSXETG00000048936	ENSXETG00000043805	ENSXETG00000042245	ENSXETG00000046588	ENSXETG00000048570	ENSXETG00000047504
Leishan spiny toad	MODERN SPECIES	5	TFCP2 (ENSLLEG00000002108)	CSRNP2 (ENSLLEG00000002041)	LETMD1 (ENSLLEG00000001999)	ENSLLEG00000001979	SLC11A2 (ENSLLEG00000001888)	ENSLLEG00000001858	ENSLLEG00000001838	CTDSP2 (ENSLLEG00000001800) #15	AVIL (ENSLLEG00000001638) #16	ENSLLEG00000001586 #17	ENSLLEG00000001567	METTL1 (ENSLLEG00000001516) #19	CYP27B1 (ENSLLEG00000001476) #20	MARCHF9 (ENSLLEG00000001451) #21	ENSLLEG00000001441	CDK4 (ENSLLEG00000001378) #22	TSPAN31 (ENSLLEG00000001339) #23	ENSLLEG00000001284	ENSLLEG00000001260	AGAP2 (ENSLLEG00000001214) #24	ENSLLEG00000001197	ENSLLEG00000001187	ENSLLEG00000001163	ENSLLEG00000001149	ENSLLEG00000000938	ENSLLEG00000000891	ENSLLEG00000000824	ENSLLEG00000000808	ENSLLEG00000000797	ENSLLEG00000000776	OS9 (ENSLLEG00000000664) #25