Hystricomorpha	ANCESTRAL SPECIES	16	ENSGT00670000098074 #7	ENSGT00940000160237	ENSGT00940000160266 #10	ENSGT00940000161328 #11	ENSGT00940000159011 #12	ENSGT00390000016390 #13	ENSGT00940000155211 #14	ENSGT00390000015513.a.a.a ##15	ENSGT00390000015513.a.a.b #15	ENSGT00940000154853.c #16	ENSGT00940000154853.d #17	ENSGT00940000158566 #18	ENSGT00940000157482.d #19	ENSGT00600000084617 #20	ENSGT00410000025985 #21	ENSGT00940000155031 #22	ENSGT00940000154196.a #23	ENSGT00390000014903 #24	ENSGT00390000006255.b.b #25	ENSGT00390000006979.a #26	ENSGT00940000161450 #27	ENSGT00940000159375 #28	ENSGT00940000154911 #29	ENSGT00390000013444.a.b.b #30	ENSGT00390000002731 #31	ENSGT00390000017869 #32	ENSGT00510000048574 #33	ENSGT00940000161844 #34	ENSGT00940000157074 #35	ENSGT00950000182985.b.b #36	ENSGT00940000160539 #37
Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00670000098074 #7	ENSGT00940000160237	ENSGT00940000160266 #10	ENSGT00940000161328 #11	ENSGT00940000159011 #12	ENSGT00390000016390 #13	ENSGT00940000155211 #14	ENSGT00390000015513.a.a.a ##15	ENSGT00390000015513.a.a.b #15	ENSGT00940000154853.c #16	ENSGT00940000154853.d #17	ENSGT00940000158566 #18	ENSGT00940000157482.d #19	ENSGT00600000084617 #20	ENSGT00410000025985 #21	ENSGT00940000155031 #22	ENSGT00940000154196.a #23	ENSGT00390000014903 #24	ENSGT00390000006255.b.b #25	ENSGT00390000006979.a #26	ENSGT00940000159375 #28	ENSGT00940000161450 #27	ENSGT00940000154911 #29	ENSGT00390000013444.a.b.b #30	ENSGT00390000002731 #31	ENSGT00390000017869 #32	ENSGT00510000048574 #33	ENSGT00940000161844 #34	ENSGT00940000157074 #35	ENSGT00950000182985.b.b #36	ENSGT00940000160539 #37
Guinea pig	MODERN SPECIES	42	ZNF367 (ENSCPOG00000001515) #7	HABP4 (ENSCPOG00000002477) #8	ENSCPOG00000005956 #9	HSD17B3 (ENSCPOG00000000609) #10	ENSCPOG00000004544 #11	PTCH1 (ENSCPOG00000002376) #12	FANCC (ENSCPOG00000032150) #13	AOPEP (ENSCPOG00000038711) #14	FBP2 (ENSCPOG00000001636) #15	PLAAT2 (ENSCPOG00000002122) #16	PLAAT3 (ENSCPOG00000034238) #17	ATL3 (ENSCPOG00000003766) #18	ENSCPOG00000004811 #19	ZFTA (ENSCPOG00000033792) #20	SPINDOC (ENSCPOG00000004724) #21	MARK2 (ENSCPOG00000004728) #22	RCOR2 (ENSCPOG00000004737) #23	NAA40 (ENSCPOG00000001891) #24	COX8A (ENSCPOG00000031964) #25	OTUB1 (ENSCPOG00000022165) #26	MACROD1 (ENSCPOG00000011720) #27	FLRT1 (ENSCPOG00000020108) #28	STIP1 (ENSCPOG00000002914) #29	FERMT3 (ENSCPOG00000002919) #30	TRPT1 (ENSCPOG00000002923) #31	NUDT22 (ENSCPOG00000032982) #32	DNAJC4 (ENSCPOG00000040213) #33	VEGFB (ENSCPOG00000032042) #34	FKBP2 (ENSCPOG00000002928) #35	PPP1R14B (ENSCPOG00000002930) #36	PLCB3 (ENSCPOG00000021694) #37
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00940000160237	ENSGT00940000160266 #10	ENSGT00940000161328 #11	ENSGT00940000163752	ENSGT00940000159011 #12	ENSGT00390000016390 #13	ENSGT00940000155211 #14	ENSGT00390000015513.a.a.a ##15	ENSGT00390000015513.a.a.b #15	ENSGT00940000154853.c #16	ENSGT00940000154853.d #17	ENSGT00940000158566 #18	ENSGT00940000157482.d #19	ENSGT00600000084617 #20	ENSGT00410000025985 #21	ENSGT00940000155031 #22	ENSGT00940000154196.a #23	ENSGT00390000014903 #24	ENSGT00390000006255.b.b #25	ENSGT00390000006979.a #26	ENSGT00940000159375 #28	ENSGT00940000161450 #27	ENSGT00940000154911 #29	ENSGT00390000013444.a.b.b #30	ENSGT00390000002731 #31	ENSGT00390000017869 #32	ENSGT00510000048574 #33	ENSGT00940000161844 #34	ENSGT00940000157074 #35	ENSGT00950000182985.b.b #36	ENSGT00940000160539 #37
Long-tailed chinchilla	MODERN SPECIES	129	PRXL2C (ENSCLAG00000016163)	HSD17B3 (ENSCLAG00000016961) #10	ERCC6L2 (ENSCLAG00000016395)	PTCH1 (ENSCLAG00000016919) #12	FANCC (ENSCLAG00000016996) #13	ENSCLAG00000017128 #14	ENSCLAG00000016743 #14	FBP1 (ENSCLAG00000017181) ##15	FBP2 (ENSCLAG00000016623) #15	PLAAT2 (ENSCLAG00000016552) #16	PLAAT3 (ENSCLAG00000017157) #17	ATL3 (ENSCLAG00000016950) #18	ENSCLAG00000016800 #19	ZFTA (ENSCLAG00000016548) #20	SPINDOC (ENSCLAG00000016329) #21	MARK2 (ENSCLAG00000017063) #22	RCOR2 (ENSCLAG00000017016) #23	NAA40 (ENSCLAG00000016890) #24	COX8A (ENSCLAG00000017185) #25	OTUB1 (ENSCLAG00000017123) #26	FLRT1 (ENSCLAG00000016935) #28	MACROD1 (ENSCLAG00000016401) #27	STIP1 (ENSCLAG00000017164) #29	TRPT1 (ENSCLAG00000016380) #31	FERMT3 (ENSCLAG00000016183) #30	NUDT22 (ENSCLAG00000016346) #32	DNAJC4 (ENSCLAG00000016759) #33	VEGFB (ENSCLAG00000016750) #34	FKBP2 (ENSCLAG00000017246) #35	PPP1R14B (ENSCLAG00000016868) #36	PLCB3 (ENSCLAG00000016775) #37
Degu	MODERN SPECIES	225	HSD17B3 (ENSODEG00000015880) #10	ENSODEG00000016588 #11	ENSODEG00000016127	PTCH1 (ENSODEG00000016019) #12	ENSODEG00000015865	FANCC (ENSODEG00000016098) #13	ENSODEG00000015655 #14	FBP1 (ENSODEG00000015932) ##15	FBP2 (ENSODEG00000016600) #15	ENSODEG00000020437	PLAAT3 (ENSODEG00000015571) #17	ATL3 (ENSODEG00000017260) #18	ENSODEG00000016120 #19	ZFTA (ENSODEG00000015496) #20	SPINDOC (ENSODEG00000015595) #21	MARK2 (ENSODEG00000017191) #22	RCOR2 (ENSODEG00000015765) #23	NAA40 (ENSODEG00000015735) #24	ENSODEG00000015780 #25	ENSODEG00000015747 #26	FLRT1 (ENSODEG00000020298) #28	MACROD1 (ENSODEG00000015291) #27	STIP1 (ENSODEG00000015289) #29	FERMT3 (ENSODEG00000015869) #30	TRPT1 (ENSODEG00000015724) #31	NUDT22 (ENSODEG00000015641) #32	DNAJC4 (ENSODEG00000016243) #33	VEGFB (ENSODEG00000016602) #34	FKBP2 (ENSODEG00000015505) #35	PPP1R14B (ENSODEG00000015767) #36	PLCB3 (ENSODEG00000015366) #37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000005827	FANCC (ENSHGLG00000013830) #13	ENSHGLG00000044815 #14	ENSHGLG00000012042 #14	ENSHGLG00000045615	FBP1 (ENSHGLG00000050880) ##15	ENSHGLG00000012322	ENSHGLG00000012161 #15	ENSHGLG00000014812	ENSHGLG00000050757 #16	ENSHGLG00000033662 #17	ENSHGLG00000010138 #18	ENSHGLG00000037041 #19	ZFTA (ENSHGLG00000011849) #20	SPINDOC (ENSHGLG00000034024) #21	ENSHGLG00000011808 #22	RCOR2 (ENSHGLG00000014109) #23	NAA40 (ENSHGLG00000013175) #24	COX8A (ENSHGLG00000012316) #25	ENSHGLG00000011812 #26	MACROD1 (ENSHGLG00000018799) #27	FLRT1 (ENSHGLG00000045678) #28	STIP1 (ENSHGLG00000016796) #29	TRPT1 (ENSHGLG00000013748) #31	NUDT22 (ENSHGLG00000012442) #32	DNAJC4 (ENSHGLG00000010363) #33	ENSHGLG00000013921 #34	FKBP2 (ENSHGLG00000037212) #35	PPP1R14B (ENSHGLG00000041422) #36	BAD (ENSHGLG00000013154)	GPR137 (ENSHGLG00000010359)
Naked mole-rat female	MODERN SPECIES	28	GPD1L (ENSHGLG00000046132)	ENSHGLG00000035456	ENSHGLG00000047272	ENSHGLG00000037369	CMTM8 (ENSHGLG00000003541)	CMTM7 (ENSHGLG00000001487)	ENSHGLG00000034894	ENSHGLG00000001574	ENSHGLG00000001731	ENSHGLG00000019891	ENSHGLG00000039776	ENSHGLG00000047516	ENSHGLG00000001826	ENSHGLG00000002090	GLB1 (ENSHGLG00000002150)	ENSHGLG00000002496 #22	ENSHGLG00000037229	CRTAP (ENSHGLG00000002614)	SUSD5 (ENSHGLG00000040528)	ENSHGLG00000037082	ENSHGLG00000002747	FBXL2 (ENSHGLG00000002144)	UBP1 (ENSHGLG00000002333)	ENSHGLG00000003013	PDCD6IP (ENSHGLG00000004033)	ENSHGLG00000001187	ENSHGLG00000040644	ENSHGLG00000033661	ENSHGLG00000035031	ENSHGLG00000050797	ENSHGLG00000036492