Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27
Sarcopterygii	ANCESTRAL SPECIES	54	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00910000144159.B	ENSGT00940000166667	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Theria	ANCESTRAL SPECIES	6	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Primates	ANCESTRAL SPECIES	10	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h	ENSGT00940000157158.d
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000006915.d	ENSGT00390000013266.b	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000010063.o.b #24	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000010063.o.b #24	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00860000136092 #14	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000010063.o.b #24	ENSGT00940000154256.l.a #25	ENSGT00390000014876.o.a #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00860000136092 #14	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000010063.o.b #24	ENSGT00940000154256.l.a #25	ENSGT00390000014876.o.a #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab
Pan	ANCESTRAL SPECIES	7	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00950000182965.a.b.b.b.g.b.a.a #11	ENSGT00940000160772 #13	ENSGT00860000136092 #14	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00970000193421.C.a.vb.a #19	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000010063.o.b #24	ENSGT00940000154256.l.a #25	ENSGT00390000014876.o.a #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab
Bonobo	MODERN SPECIES	17	HPGD (ENSPPAG00000040053) #7	CEP44 (ENSPPAG00000031462) #8	FBXO8 (ENSPPAG00000035822) #9	ENSPPAG00000026731 #10	ENSPPAG00000010368 #11	ENSPPAG00000017140 #12	ENSPPAG00000012097 #13	ENSPPAG00000006019 #14	SCRG1 (ENSPPAG00000036840) #15	ENSPPAG00000034405 #16	HMGB2 (ENSPPAG00000043994) #17	GALNT7 (ENSPPAG00000034268) #18	ENSPPAG00000002018 #19	ENSPPAG00000027655 #20	GALNTL6 (ENSPPAG00000003147) #21	AADAT (ENSPPAG00000041158) #22	MFAP3L (ENSPPAG00000041103) #23	ENSPPAG00000041549 #24	ENSPPAG00000041291 #25	HPF1 (ENSPPAG00000000046) #26	CLCN3 (ENSPPAG00000042101) #27	NEK1 (ENSPPAG00000018386) #28	SH3RF1 (ENSPPAG00000034156) #29	CBR4 (ENSPPAG00000037448) #30	ENSPPAG00000027926 #31	ENSPPAG00000042740 #32	DDX60L (ENSPPAG00000014553) #33	ENSPPAG00000040254 #34	ANXA10 (ENSPPAG00000031022) #35	SPOCK3 (ENSPPAG00000032890) #36	TLL1 (ENSPPAG00000038906) #37
Chimpanzee	MODERN SPECIES	17	GLRA3 (ENSPTRG00000016607)	HPGD (ENSPTRG00000016606) #7	CEP44 (ENSPTRG00000016605) #8	FBXO8 (ENSPTRG00000016604) #9	ENSPTRG00000046852 #10	ENSPTRG00000045495 #11	HAND2 (ENSPTRG00000016601) #13	ENSPTRG00000046676 #14	SCRG1 (ENSPTRG00000016599) #15	SAP30 (ENSPTRG00000016598) #16	HMGB2 (ENSPTRG00000016597) #17	GALNT7 (ENSPTRG00000016596) #18	ENSPTRG00000051120 #19	ENSPTRG00000047261 #20	GALNTL6 (ENSPTRG00000016595) #21	AADAT (ENSPTRG00000016592) #22	MFAP3L (ENSPTRG00000016591) #23	ENSPTRG00000051995 #24	ENSPTRG00000051762 #25	HPF1 (ENSPTRG00000016590) #26	CLCN3 (ENSPTRG00000016589) #27	NEK1 (ENSPTRG00000016588) #28	SH3RF1 (ENSPTRG00000016587) #29	CBR4 (ENSPTRG00000016585) #30	ENSPTRG00000046885 #31	PALLD (ENSPTRG00000016583) #32	DDX60L (ENSPTRG00000016582) #33	DDX60 (ENSPTRG00000016581) #34	ANXA10 (ENSPTRG00000016580) #35	SPOCK3 (ENSPTRG00000016579) #36	TLL1 (ENSPTRG00000016577) #37
Human	MODERN SPECIES	16	ASB5 (ENSG00000164122)	SPATA4 (ENSG00000150628)	WDR17 (ENSG00000150627)	GPM6A (ENSG00000150625)	ADAM29 (ENSG00000168594)	GLRA3 (ENSG00000145451)	HPGD (ENSG00000164120) #7	CEP44 (ENSG00000164118) #8	FBXO8 (ENSG00000164117) #9	HAND2 (ENSG00000164107) #13	SCRG1 (ENSG00000164106) #15	SAP30 (ENSG00000164105) #16	HMGB2 (ENSG00000164104) #17	GALNT7 (ENSG00000109586) #18	GALNTL6 (ENSG00000174473) #21	AADAT (ENSG00000109576) #22	MFAP3L (ENSG00000198948) #23	HPF1 (ENSG00000056050) #26	CLCN3 (ENSG00000109572) #27	NEK1 (ENSG00000137601) #28	SH3RF1 (ENSG00000154447) #29	CBR4 (ENSG00000145439) #30	PALLD (ENSG00000129116) #32	DDX60L (ENSG00000181381) #33	DDX60 (ENSG00000137628) #34	ANXA10 (ENSG00000109511) #35	SPOCK3 (ENSG00000196104) #36	TLL1 (ENSG00000038295) #37	CPE (ENSG00000109472)	MSMO1 (ENSG00000052802)	GK3 (ENSG00000229894)
Gorilla	MODERN SPECIES	17	ADAM29 (ENSGGOG00000011350)	GLRA3 (ENSGGOG00000006359)	HPGD (ENSGGOG00000009878) #7	CEP44 (ENSGGOG00000025044) #8	FBXO8 (ENSGGOG00000005344) #9	ENSGGOG00000024847 #10	HAND2 (ENSGGOG00000006147) #13	ENSGGOG00000012612 #14	SCRG1 (ENSGGOG00000025633) #15	SAP30 (ENSGGOG00000005082) #16	HMGB2 (ENSGGOG00000015882) #17	GALNT7 (ENSGGOG00000028299) #18	ENSGGOG00000022063 #20	GALNTL6 (ENSGGOG00000002766) #21	ENSGGOG00000037146	AADAT (ENSGGOG00000012081) #22	ENSGGOG00000025735 #23	ENSGGOG00000024258 #23	ENSGGOG00000026687	ENSGGOG00000024271 #25	HPF1 (ENSGGOG00000003090) #26	CLCN3 (ENSGGOG00000014250) #27	NEK1 (ENSGGOG00000008001) #28	SH3RF1 (ENSGGOG00000000154) #29	CBR4 (ENSGGOG00000024424) #30	PALLD (ENSGGOG00000009674) #32	DDX60L (ENSGGOG00000014778) #33	DDX60 (ENSGGOG00000012801) #34	ANXA10 (ENSGGOG00000007800) #35	SPOCK3 (ENSGGOG00000036722) #36	TLL1 (ENSGGOG00000000148) #37
Orangutan	MODERN SPECIES	17	GPM6A (ENSPPYG00000015214)	ADAM29 (ENSPPYG00000015277)	GLRA3 (ENSPPYG00000015213)	HPGD (ENSPPYG00000015212) #7	CEP44 (ENSPPYG00000015211) #8	FBXO8 (ENSPPYG00000015210) #9	ENSPPYG00000036877 #11	HAND2 (ENSPPYG00000039964) #13	SCRG1 (ENSPPYG00000015206) #15	SAP30 (ENSPPYG00000015205) #16	HMGB2 (ENSPPYG00000015204) #17	GALNT7 (ENSPPYG00000015203) #18	ENSPPYG00000032084	GALNTL6 (ENSPPYG00000015201) #21	ENSPPYG00000015200	AADAT (ENSPPYG00000015196) #22	MFAP3L (ENSPPYG00000015194) #23	HPF1 (ENSPPYG00000015193) #26	CLCN3 (ENSPPYG00000015192) #27	NEK1 (ENSPPYG00000015190) #28	SH3RF1 (ENSPPYG00000015189) #29	CBR4 (ENSPPYG00000015188) #30	PALLD (ENSPPYG00000015186) #32	DDX60L (ENSPPYG00000015185) #33	DDX60 (ENSPPYG00000015184) #34	ANXA10 (ENSPPYG00000015183) #35	SPOCK3 (ENSPPYG00000015182) #36	TLL1 (ENSPPYG00000015181) #37	ENSPPYG00000032018	CPE (ENSPPYG00000015179)	MSMO1 (ENSPPYG00000015178)
Gibbon	MODERN SPECIES	22	ENSNLEG00000016761	ADAM29 (ENSNLEG00000006715)	GLRA3 (ENSNLEG00000006711)	HPGD (ENSNLEG00000006696) #7	CEP44 (ENSNLEG00000006689) #8	FBXO8 (ENSNLEG00000006678) #9	ENSNLEG00000027690	HAND2 (ENSNLEG00000006670) #13	SCRG1 (ENSNLEG00000006669) #15	SAP30 (ENSNLEG00000031399) #16	ENSNLEG00000033142	HMGB2 (ENSNLEG00000006662) #17	GALNT7 (ENSNLEG00000006654) #18	ENSNLEG00000035794 #20	GALNTL6 (ENSNLEG00000006652) #21	AADAT (ENSNLEG00000006647) #22	ENSNLEG00000006644 #23	ENSNLEG00000029490 #24	ENSNLEG00000035908 #25	HPF1 (ENSNLEG00000006641) #26	CLCN3 (ENSNLEG00000006634) #27	NEK1 (ENSNLEG00000006608) #28	SH3RF1 (ENSNLEG00000006600) #29	CBR4 (ENSNLEG00000029627) #30	PALLD (ENSNLEG00000006567) #32	DDX60L (ENSNLEG00000006565) #33	DDX60 (ENSNLEG00000006542) #34	ANXA10 (ENSNLEG00000006535) #35	SPOCK3 (ENSNLEG00000006528) #36	TLL1 (ENSNLEG00000006519) #37	ENSNLEG00000028854
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h
Vervet Monkey	MODERN SPECIES	26	WDR17 (ENSCSAG00000003086)	GPM6A (ENSCSAG00000003087)	ADAM29 (ENSCSAG00000003088)	GLRA3 (ENSCSAG00000003089)	HPGD (ENSCSAG00000003090) #7	CEP44 (ENSCSAG00000003091) #8	FBXO8 (ENSCSAG00000003092) #9	HAND2 (ENSCSAG00000003094) #13	SCRG1 (ENSCSAG00000003096) #15	SAP30 (ENSCSAG00000003099) #16	HMGB2 (ENSCSAG00000003100) #17	GALNT7 (ENSCSAG00000003101) #18	ENSCSAG00000003102 #21	ENSCSAG00000003103 #21	ENSCSAG00000000098	AADAT (ENSCSAG00000003109) #22	MFAP3L (ENSCSAG00000003111) #23	HPF1 (ENSCSAG00000003113) #26	CLCN3 (ENSCSAG00000003116) #27	NEK1 (ENSCSAG00000003121) #28	SH3RF1 (ENSCSAG00000003124) #29	CBR4 (ENSCSAG00000003127) #30	PALLD (ENSCSAG00000003143) #32	DDX60L (ENSCSAG00000003149) #33	DDX60 (ENSCSAG00000003155) #34	ANXA10 (ENSCSAG00000003159) #35	ENSCSAG00000003162	SPOCK3 (ENSCSAG00000003165) #36	TLL1 (ENSCSAG00000003170) #37	CPE (ENSCSAG00000003171)	MSMO1 (ENSCSAG00000003174)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb.a #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h
Macaca	ANCESTRAL SPECIES	18	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb.a #17	ENSGT00940000158105 #18	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000157158.d
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb.a #17	ENSGT00940000158105 #18	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT01100000263493.a.a.a.b.b.b.b.a.b.b.a.b.b.a	ENSGT00390000004860.ab
Crab-eating macaque	MODERN SPECIES	15	WDR17 (ENSMFAG00000043874)	GPM6A (ENSMFAG00000030986)	ADAM29 (ENSMFAG00000038871)	GLRA3 (ENSMFAG00000034554)	HPGD (ENSMFAG00000041220) #7	CEP44 (ENSMFAG00000003438) #8	FBXO8 (ENSMFAG00000034344) #9	ENSMFAG00000055873	HAND2 (ENSMFAG00000046008) #13	SCRG1 (ENSMFAG00000038499) #15	SAP30 (ENSMFAG00000037966) #16	ENSMFAG00000002605 #17	GALNT7 (ENSMFAG00000041069) #18	ENSMFAG00000030083 #20	GALNTL6 (ENSMFAG00000003378) #21	AADAT (ENSMFAG00000042881) #22	ENSMFAG00000060933	MFAP3L (ENSMFAG00000065805) #23	ENSMFAG00000038704 #25	HPF1 (ENSMFAG00000038736) #26	CLCN3 (ENSMFAG00000039959) #27	NEK1 (ENSMFAG00000043975) #28	SH3RF1 (ENSMFAG00000026776) #29	CBR4 (ENSMFAG00000002570) #30	PALLD (ENSMFAG00000001632) #32	DDX60L (ENSMFAG00000045327) #33	DDX60 (ENSMFAG00000016136) #34	ANXA10 (ENSMFAG00000002951) #35	ENSMFAG00000055266	ENSMFAG00000055789	SPOCK3 (ENSMFAG00000039387) #36
Rhesus	MODERN SPECIES	15	SPATA4 (ENSMMUG00000013733)	WDR17 (ENSMMUG00000013730)	GPM6A (ENSMMUG00000007814)	ADAM29 (ENSMMUG00000061083)	GLRA3 (ENSMMUG00000008868)	HPGD (ENSMMUG00000020408) #7	CEP44 (ENSMMUG00000001743) #8	FBXO8 (ENSMMUG00000002331) #9	HAND2 (ENSMMUG00000048816) #13	SCRG1 (ENSMMUG00000002399) #15	SAP30 (ENSMMUG00000002401) #16	HMGB2 (ENSMMUG00000003187) #17	GALNT7 (ENSMMUG00000013106) #18	GALNTL6 (ENSMMUG00000016767) #21	ENSMMUG00000057646	AADAT (ENSMMUG00000019473) #22	MFAP3L (ENSMMUG00000040113) #23	HPF1 (ENSMMUG00000010232) #26	CLCN3 (ENSMMUG00000010228) #27	NEK1 (ENSMMUG00000012244) #28	ENSMMUG00000050412	SH3RF1 (ENSMMUG00000012701) #29	CBR4 (ENSMMUG00000015921) #30	PALLD (ENSMMUG00000007365) #32	DDX60L (ENSMMUG00000003634) #33	DDX60 (ENSMMUG00000001880) #34	ANXA10 (ENSMMUG00000001879) #35	SPOCK3 (ENSMMUG00000006851) #36	TLL1 (ENSMMUG00000015799) #37	ENSMMUG00000054824	CPE (ENSMMUG00000023400)
Pig-tailed macaque	MODERN SPECIES	375	GLRA3 (ENSMNEG00000035116)	HPGD (ENSMNEG00000040489) #7	ENSMNEG00000043522	CEP44 (ENSMNEG00000012365) #8	FBXO8 (ENSMNEG00000043927) #9	ENSMNEG00000036274	ENSMNEG00000045386 #10	HAND2 (ENSMNEG00000039463) #13	SCRG1 (ENSMNEG00000032472) #15	SAP30 (ENSMNEG00000039771) #16	ENSMNEG00000035959 #17	GALNT7 (ENSMNEG00000040629) #18	GALNTL6 (ENSMNEG00000039184) #21	ENSMNEG00000040238 ##20	ENSMNEG00000029628	AADAT (ENSMNEG00000014362) #22	MFAP3L (ENSMNEG00000038878) #23	ENSMNEG00000034235 #25	HPF1 (ENSMNEG00000029561) #26	CLCN3 (ENSMNEG00000028245) #27	NEK1 (ENSMNEG00000042336) #28	SH3RF1 (ENSMNEG00000039365) #29	CBR4 (ENSMNEG00000045378) #30	PALLD (ENSMNEG00000042389) #32	DDX60L (ENSMNEG00000029554) #33	DDX60 (ENSMNEG00000030573) #34	ANXA10 (ENSMNEG00000009695) #35	SPOCK3 (ENSMNEG00000030644) #36	TLL1 (ENSMNEG00000029076) #37	ENSMNEG00000005430	CPE (ENSMNEG00000042411)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb.a #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb.a #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00390000004860.ab	ENSGT00940000154677.h
Sooty mangabey	MODERN SPECIES	272	ASB5 (ENSCATG00000033982)	SPATA4 (ENSCATG00000012381)	WDR17 (ENSCATG00000019324)	GPM6A (ENSCATG00000039800)	GLRA3 (ENSCATG00000030144)	HPGD (ENSCATG00000000045) #7	ENSCATG00000038865	CEP44 (ENSCATG00000032368) #8	FBXO8 (ENSCATG00000042187) #9	HAND2 (ENSCATG00000043828) #13	SCRG1 (ENSCATG00000034185) #15	SAP30 (ENSCATG00000035487) #16	GALNT7 (ENSCATG00000042532) #18	GALNTL6 (ENSCATG00000034550) #21	ENSCATG00000042549 ##20	AADAT (ENSCATG00000013451) #22	MFAP3L (ENSCATG00000017844) #23	ENSCATG00000029833 #25	HPF1 (ENSCATG00000040382) #26	CLCN3 (ENSCATG00000035110) #27	NEK1 (ENSCATG00000041685) #28	SH3RF1 (ENSCATG00000044552) #29	CBR4 (ENSCATG00000044537) #30	ENSCATG00000038325	PALLD (ENSCATG00000034876) #32	DDX60L (ENSCATG00000044236) #33	DDX60 (ENSCATG00000038859) #34	ANXA10 (ENSCATG00000041057) #35	SPOCK3 (ENSCATG00000045135) #36	TLL1 (ENSCATG00000045361) #37	ENSCATG00000038353
Drill	MODERN SPECIES	1546																AADAT (ENSMLEG00000001590) #22	MFAP3L (ENSMLEG00000041779) #23	ENSMLEG00000034030 #25	HPF1 (ENSMLEG00000023008) #26	CLCN3 (ENSMLEG00000037522) #27	NEK1 (ENSMLEG00000039697) #28	SH3RF1 (ENSMLEG00000039808) #29	CBR4 (ENSMLEG00000029195) #30	PALLD (ENSMLEG00000037012) #32	DDX60L (ENSMLEG00000027365) #33	DDX60 (ENSMLEG00000030919) #34	ANXA10 (ENSMLEG00000041410) #35	SPOCK3 (ENSMLEG00000036560) #36	TLL1 (ENSMLEG00000032845) #37	ENSMLEG00000035584	ENSMLEG00000032503
Olive baboon	MODERN SPECIES	13	ENSPANG00000049567	ENSPANG00000038055	GLRA3 (ENSPANG00000019809)	HPGD (ENSPANG00000019812) #7	CEP44 (ENSPANG00000011904) #8	FBXO8 (ENSPANG00000007876) #9	POLR3K (ENSPANG00000010715)	HAND2 (ENSPANG00000023378) #13	SCRG1 (ENSPANG00000011779) #15	SAP30 (ENSPANG00000005972) #16	ENSPANG00000004276 #17	GALNT7 (ENSPANG00000018129) #18	ENSPANG00000038603	GALNTL6 (ENSPANG00000006244) #21	ENSPANG00000013594 #20	AADAT (ENSPANG00000000686) #22	MFAP3L (ENSPANG00000008031) #23	ENSPANG00000007780 #25	HPF1 (ENSPANG00000006046) #26	CLCN3 (ENSPANG00000011413) #27	NEK1 (ENSPANG00000018130) #28	SH3RF1 (ENSPANG00000006245) #29	CBR4 (ENSPANG00000017537) #30	PALLD (ENSPANG00000018592) #32	DDX60L (ENSPANG00000017684) #33	ENSPANG00000019535 #34	ANXA10 (ENSPANG00000009896) #35	SPOCK3 (ENSPANG00000006370) #36	ENSPANG00000050156	TLL1 (ENSPANG00000019718) #37	ENSPANG00000044888
Rhinopithecus	ANCESTRAL SPECIES	317							ENSGT00940000158356 #9	ENSGT00940000153786.e.a.a #10	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.rb #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00540000070023.c.b.a.a.a.a #20	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000154256.l.a #25	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30
Golden snub-nosed monkey	MODERN SPECIES	1115								HAND2 (ENSRROG00000031801) #13	SCRG1 (ENSRROG00000014911) #15	SAP30 (ENSRROG00000002347) #16	HMGB2 (ENSRROG00000028474) #17	GALNT7 (ENSRROG00000036234) #18	ENSRROG00000010395	GALNTL6 (ENSRROG00000043458) #21	ENSRROG00000043442 #20	AADAT (ENSRROG00000034574) #22	MFAP3L (ENSRROG00000045554) #23	ENSRROG00000031239 #25	HPF1 (ENSRROG00000021840) #26	CLCN3 (ENSRROG00000043259) #27	NEK1 (ENSRROG00000037619) #28	SH3RF1 (ENSRROG00000016875) #29	CBR4 (ENSRROG00000034901) #30
Black snub-nosed monkey	MODERN SPECIES	2425																AADAT (ENSRBIG00000042460) #22	MFAP3L (ENSRBIG00000044172) #23	ENSRBIG00000038338 #25	HPF1 (ENSRBIG00000037892) #26	CLCN3 (ENSRBIG00000031090) #27	NEK1 (ENSRBIG00000044330) #28	SH3RF1 (ENSRBIG00000037903) #29	CBR4 (ENSRBIG00000028785) #30
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT01050000244808.A.b.a.a.a.a.o.a.b	ENSGT00940000155436.o.b	ENSGT00940000154949.b.t	ENSGT00940000157158.d
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT01050000244808.A.b.a.a.a.a.o.a.b	ENSGT00940000155436.o.b	ENSGT00940000154949.b.t	ENSGT00940000157158.d
Cebidae_a	ANCESTRAL SPECIES	75	ENSGT00390000009223.hb	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Bolivian squirrel monkey	MODERN SPECIES	148						CEP44 (ENSSBOG00000026905) #8	FBXO8 (ENSSBOG00000024361) #9	HAND2 (ENSSBOG00000020792) #13	SCRG1 (ENSSBOG00000020400) #15	SAP30 (ENSSBOG00000028701) #16	HMGB2 (ENSSBOG00000019768) #17	GALNT7 (ENSSBOG00000019315) #18	GALNTL6 (ENSSBOG00000022037) #21	ENSSBOG00000014979	ENSSBOG00000024886	AADAT (ENSSBOG00000024461) #22	MFAP3L (ENSSBOG00000025044) #23	CLCN3 (ENSSBOG00000028784) #27	NEK1 (ENSSBOG00000025743) #28	SH3RF1 (ENSSBOG00000022175) #29	CBR4 (ENSSBOG00000025702) #30	PALLD (ENSSBOG00000022324) #32	DDX60L (ENSSBOG00000034368) #33	DDX60 (ENSSBOG00000024856) #34	ANXA10 (ENSSBOG00000019170) #35	SPOCK3 (ENSSBOG00000022664) #36
Capuchin	MODERN SPECIES	190														ENSCCAG00000036073	ENSCCAG00000024337	AADAT (ENSCCAG00000029226) #22	MFAP3L (ENSCCAG00000022837) #23	CLCN3 (ENSCCAG00000021689) #27	ENSCCAG00000030452 #28	ENSCCAG00000035406	SMIM17 (ENSCCAG00000038012)	ZNF470 (ENSCCAG00000021807)	ZFP28 (ENSCCAG00000029628)	ZNF471 (ENSCCAG00000036837)	ZNF667 (ENSCCAG00000025582)	ZNF583 (ENSCCAG00000022820)	ZNF582 (ENSCCAG00000025711)	EDDM13 (ENSCCAG00000028881)	ENSCCAG00000021033	ENSCCAG00000028957	ENSCCAG00000036576
Marmoset	MODERN SPECIES	15	GPM6A (ENSCJAG00000005275)	ADAM29 (ENSCJAG00000005263)	GLRA3 (ENSCJAG00000005246)	HPGD (ENSCJAG00000005216) #7	CEP44 (ENSCJAG00000005195) #8	ENSCJAG00000085401	FBXO8 (ENSCJAG00000045228) #9	ENSCJAG00000080613 #12	HAND2 (ENSCJAG00000069132) #13	SCRG1 (ENSCJAG00000005138) #15	SAP30 (ENSCJAG00000065744) #16	HMGB2 (ENSCJAG00000005112) #17	GALNT7 (ENSCJAG00000005081) #18	GALNTL6 (ENSCJAG00000005073) #21	ENSCJAG00000059633	AADAT (ENSCJAG00000005048) #22	MFAP3L (ENSCJAG00000005041) #23	ENSCJAG00000080915	CLCN3 (ENSCJAG00000004980) #27	NEK1 (ENSCJAG00000004881) #28	ENSCJAG00000077338	SH3RF1 (ENSCJAG00000004855) #29	ENSCJAG00000060059	CBR4 (ENSCJAG00000086762) #30	PALLD (ENSCJAG00000004780) #32	DDX60L (ENSCJAG00000046221) #33	DDX60 (ENSCJAG00000004726) #34	ANXA10 (ENSCJAG00000004702) #35	SPOCK3 (ENSCJAG00000004671) #36	ENSCJAG00000075932	ENSCJAG00000085666
Mas night monkey	MODERN SPECIES	765																AADAT (ENSANAG00000018576) #22	MFAP3L (ENSANAG00000027613) #23	CLCN3 (ENSANAG00000032027) #27	NEK1 (ENSANAG00000020008) #28	SH3RF1 (ENSANAG00000028597) #29	CBR4 (ENSANAG00000024447) #30	PALLD (ENSANAG00000020529) #32	DDX60L (ENSANAG00000032430) #33	DDX60 (ENSANAG00000030883) #34	ANXA10 (ENSANAG00000032501) #35	ENSANAG00000029155 #36
Tarsier	MODERN SPECIES	4891																AADAT (ENSTSYG00000007956) #22	MFAP3L (ENSTSYG00000030572) #23
Strepsirrhini	ANCESTRAL SPECIES	43	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749.l
Lemuriformes	ANCESTRAL SPECIES	71	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749.l
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	5	WDR17 (ENSMICG00000001970)	GPM6A (ENSMICG00000003037)	ADAM29 (ENSMICG00000032176)	GLRA3 (ENSMICG00000012219)	HPGD (ENSMICG00000014923) #7	CEP44 (ENSMICG00000009966) #8	FBXO8 (ENSMICG00000009959) #9	HAND2 (ENSMICG00000046152) #13	SCRG1 (ENSMICG00000008612) #15	SAP30 (ENSMICG00000028650) #16	HMGB2 (ENSMICG00000043425) #17	GALNT7 (ENSMICG00000016467) #18	GALNTL6 (ENSMICG00000016455) #21	ENSMICG00000030647	ENSMICG00000043865 #22	ENSMICG00000008046 #22	MFAP3L (ENSMICG00000017310) #23	HPF1 (ENSMICG00000017309) #26	CLCN3 (ENSMICG00000017306) #27	NEK1 (ENSMICG00000017300) #28	ENSMICG00000033035	SH3RF1 (ENSMICG00000017298) #29	CBR4 (ENSMICG00000034212) #30	ENSMICG00000036078 #32	ENSMICG00000028842	DDX60 (ENSMICG00000013542) #34	ANXA10 (ENSMICG00000013528) #35	SPOCK3 (ENSMICG00000009138) #36	TLL1 (ENSMICG00000007263) #37	CPE (ENSMICG00000046699)	MSMO1 (ENSMICG00000033307)
Mouse lemur	MODERN SPECIES	5	SPATA4 (ENSMICG00000001985)	WDR17 (ENSMICG00000001970)	GPM6A (ENSMICG00000003037)	ADAM29 (ENSMICG00000032176)	GLRA3 (ENSMICG00000012219)	HPGD (ENSMICG00000014923) #7	CEP44 (ENSMICG00000009966) #8	FBXO8 (ENSMICG00000009959) #9	HAND2 (ENSMICG00000046152) #13	SCRG1 (ENSMICG00000008612) #15	SAP30 (ENSMICG00000028650) #16	HMGB2 (ENSMICG00000043425) #17	GALNT7 (ENSMICG00000016467) #18	GALNTL6 (ENSMICG00000016455) #21	ENSMICG00000030647	ENSMICG00000043865 #22	ENSMICG00000008046 #22	MFAP3L (ENSMICG00000017310) #23	HPF1 (ENSMICG00000017309) #26	CLCN3 (ENSMICG00000017306) #27	NEK1 (ENSMICG00000017300) #28	ENSMICG00000033035	SH3RF1 (ENSMICG00000017298) #29	CBR4 (ENSMICG00000034212) #30	ENSMICG00000036078 #32	ENSMICG00000028842	DDX60 (ENSMICG00000013542) #34	ANXA10 (ENSMICG00000013528) #35	SPOCK3 (ENSMICG00000009138) #36	TLL1 (ENSMICG00000007263) #37	CPE (ENSMICG00000046699)
Lemuriformes_a	ANCESTRAL SPECIES	149	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Coquerels sifaka	MODERN SPECIES	689	GGN (ENSPCOG00000026285)	PSMD8 (ENSPCOG00000021828)	ENSPCOG00000023748	CATSPERG (ENSPCOG00000019353)	KCNK6 (ENSPCOG00000018410)	YIF1B (ENSPCOG00000023324)	C19orf33 (ENSPCOG00000014762)	SPINT2 (ENSPCOG00000008118)	PPP1R14A (ENSPCOG00000022401)	DPF1 (ENSPCOG00000016366)	SIPA1L3 (ENSPCOG00000024197)	WDR87 (ENSPCOG00000021806)	ZNF573 (ENSPCOG00000020957)	ZFP30 (ENSPCOG00000000277)	ZNF790 (ENSPCOG00000022212)	AADAT (ENSPCOG00000027071) #22	MFAP3L (ENSPCOG00000003060) #23	HPF1 (ENSPCOG00000001107) #26	CLCN3 (ENSPCOG00000027365) #27	NEK1 (ENSPCOG00000014720) #28	SH3RF1 (ENSPCOG00000028382) #29	CBR4 (ENSPCOG00000023811) #30	PALLD (ENSPCOG00000017752) #32	DDX60 (ENSPCOG00000008412) #34	ANXA10 (ENSPCOG00000007620) #35	SPOCK3 (ENSPCOG00000025291) #36	TLL1 (ENSPCOG00000025854) #37	CPE (ENSPCOG00000026341)	KLHL2 (ENSPCOG00000017119)	ENSPCOG00000020042
Greater bamboo lemur	MODERN SPECIES	127	SPATA4 (ENSPSMG00000020238)	WDR17 (ENSPSMG00000020226)	GPM6A (ENSPSMG00000020158)	ENSPSMG00000020137	ENSPSMG00000020126	GLRA3 (ENSPSMG00000020114)	HPGD (ENSPSMG00000020069) #7	CEP44 (ENSPSMG00000020017) #8	FBXO8 (ENSPSMG00000019948) #9	HAND2 (ENSPSMG00000019893) #13	SCRG1 (ENSPSMG00000019876) #15	SAP30 (ENSPSMG00000019866) #16	HMGB2 (ENSPSMG00000019855) #17	GALNT7 (ENSPSMG00000019840) #18	GALNTL6 (ENSPSMG00000019785) #21	AADAT (ENSPSMG00000019745) #22	MFAP3L (ENSPSMG00000019710) #23	HPF1 (ENSPSMG00000019705) #26	CLCN3 (ENSPSMG00000019500) #27	NEK1 (ENSPSMG00000019140) #28	SH3RF1 (ENSPSMG00000018755) #29	CBR4 (ENSPSMG00000018728) #30	PALLD (ENSPSMG00000018690) #32	ANXA10 (ENSPSMG00000018630) #35	ENSPSMG00000018604 #36
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	176	SPATA4 (ENSOGAG00000012224)	WDR17 (ENSOGAG00000012212)	GPM6A (ENSOGAG00000001624)	ENSOGAG00000025364	ADAM29 (ENSOGAG00000015487)	GLRA3 (ENSOGAG00000015483)	HPGD (ENSOGAG00000004664) #7	CEP44 (ENSOGAG00000009295) #8	FBXO8 (ENSOGAG00000005533) #9	HAND2 (ENSOGAG00000027928) #13	SAP30 (ENSOGAG00000017151) #16	HMGB2 (ENSOGAG00000017149) #17	GALNT7 (ENSOGAG00000017148) #18	ENSOGAG00000002295 #21	ENSOGAG00000030679 #21	ENSOGAG00000008331 #22	MFAP3L (ENSOGAG00000008328) #23	HPF1 (ENSOGAG00000008007) #26	CLCN3 (ENSOGAG00000008001) #27	NEK1 (ENSOGAG00000007988) #28
Bushbaby	MODERN SPECIES	122	CDK17 (ENSOGAG00000007484)	ENSOGAG00000012022	ENSOGAG00000024990	ENSOGAG00000005823	NEDD1 (ENSOGAG00000005824)	ENSOGAG00000012220	SLC25A3 (ENSOGAG00000012222)	ENSOGAG00000028619	IKBIP (ENSOGAG00000012226)	APAF1 (ENSOGAG00000012229)	ENSOGAG00000025146	GARIN6 (ENSOGAG00000006412)	ANKS1B (ENSOGAG00000012239)	BLTP3B (ENSOGAG00000001738)	ACTR6 (ENSOGAG00000001741)	ENSOGAG00000026542 #22	DEPDC4 (ENSOGAG00000026205)	SCYL2 (ENSOGAG00000007862)	SLC17A8 (ENSOGAG00000007870)	NR1H4 (ENSOGAG00000007874)	GAS2L3 (ENSOGAG00000003680)	ANO4 (ENSOGAG00000015111)	SLC5A8 (ENSOGAG00000015120)	ENSOGAG00000026488	UTP20 (ENSOGAG00000015130)	ARL1 (ENSOGAG00000015144)	SPIC (ENSOGAG00000015148)	MYBPC1 (ENSOGAG00000001204)	CHPT1 (ENSOGAG00000001207)	SYCP3 (ENSOGAG00000024543)	GNPTAB (ENSOGAG00000012576)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Tree shrew	MODERN SPECIES	7909																AADAT (ENSTBEG00000015548) #22
Glires	ANCESTRAL SPECIES	8	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Rodentia	ANCESTRAL SPECIES	21	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Muroidea_A	ANCESTRAL SPECIES	26	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00940000166667	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Northern American deer mouse	MODERN SPECIES	8	Adam29 (ENSPEMG00000013490)	Glra3 (ENSPEMG00000028664)	Hpgd (ENSPEMG00000000284) #7	Cep44 (ENSPEMG00000002959) #8	Fbxo8 (ENSPEMG00000009379) #9	ENSPEMG00000029214	Hand2 (ENSPEMG00000010233) #13	ENSPEMG00000014184	Scrg1 (ENSPEMG00000010744) #15	Sap30 (ENSPEMG00000029866) #16	Hmgb2 (ENSPEMG00000013378) #17	Galnt7 (ENSPEMG00000003586) #18	Galntl6 (ENSPEMG00000011290) #21	ENSPEMG00000013604	ENSPEMG00000030181	Aadat (ENSPEMG00000018250) #22	ENSPEMG00000021022	Mfap3l (ENSPEMG00000025834) #23	Hpf1 (ENSPEMG00000016055) #26	Clcn3 (ENSPEMG00000008384) #27	Nek1 (ENSPEMG00000012961) #28	Sh3rf1 (ENSPEMG00000015623) #29	Cbr4 (ENSPEMG00000022822) #30	Palld (ENSPEMG00000023321) #32	Ddx60 (ENSPEMG00000023735) #34	Anxa10 (ENSPEMG00000020433) #35	ENSPEMG00000030382	Spock3 (ENSPEMG00000014397) #36	ENSPEMG00000031225	ENSPEMG00000024368	Tll1 (ENSPEMG00000012383) #37
Prairie vole	MODERN SPECIES	111							Glra3 (ENSMOCG00000003565)	Hpgd (ENSMOCG00000001799) #7	ENSMOCG00000009906 #8	Fbxo8 (ENSMOCG00000014976) #9	Hand2 (ENSMOCG00000008122) #13	Scrg1 (ENSMOCG00000014573) #15	Sap30 (ENSMOCG00000018678) #16	Galnt7 (ENSMOCG00000000949) #18	Galntl6 (ENSMOCG00000004594) #21	Aadat (ENSMOCG00000015438) #22	Mfap3l (ENSMOCG00000010979) #23	ENSMOCG00000001582	Hpf1 (ENSMOCG00000004147) #26	Clcn3 (ENSMOCG00000003227) #27	ENSMOCG00000008093 #28
Cricetinae	ANCESTRAL SPECIES	48				ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Golden Hamster	MODERN SPECIES	669		Glra3 (ENSMAUG00000011925)	Hpgd (ENSMAUG00000010891) #7	Cep44 (ENSMAUG00000011204) #8	Fbxo8 (ENSMAUG00000012436) #9	Hand2 (ENSMAUG00000012686) #13	Scrg1 (ENSMAUG00000013088) #15	Sap30 (ENSMAUG00000013191) #16	Hmgb2 (ENSMAUG00000013441) #17	Galnt7 (ENSMAUG00000011496) #18	ENSMAUG00000012103 #21	ENSMAUG00000015802 #21	ENSMAUG00000012405 #21	BC030500 (ENSMAUG00000013365)	ENSMAUG00000013989	Aadat (ENSMAUG00000015707) #22	Mfap3l (ENSMAUG00000014241) #23	Hpf1 (ENSMAUG00000014126) #26	Clcn3 (ENSMAUG00000015301) #27	ENSMAUG00000018140 #28	Sh3rf1 (ENSMAUG00000000082) #29	Cbr4 (ENSMAUG00000017962) #30	ENSMAUG00000018482 #32	Ddx60 (ENSMAUG00000016664) #34	Anxa10 (ENSMAUG00000001421) #35	Spock3 (ENSMAUG00000003473) #36	Tll1 (ENSMAUG00000008471) #37	Cpe (ENSMAUG00000010887)	ENSMAUG00000011720	Msmo1 (ENSMAUG00000012095)	Klhl2 (ENSMAUG00000004976)
Chinese hamster chok1gshd	MODERN SPECIES	184		ENSCGRG00001013309	Adam29 (ENSCGRG00001014076)	Glra3 (ENSCGRG00001015150)	Hpgd (ENSCGRG00001016299) #7	Cep44 (ENSCGRG00001017213) #8	Fbxo8 (ENSCGRG00001019818) #9	ENSCGRG00001020251	Hand2 (ENSCGRG00001021215) #13	Scrg1 (ENSCGRG00001000369) #15	Sap30 (ENSCGRG00001002497) #16	Hmgb2 (ENSCGRG00001003816) #17	Galnt7 (ENSCGRG00001010057) #18	Galntl6 (ENSCGRG00001016834) #21	ENSCGRG00001018787	Aadat (ENSCGRG00001015537) #22	Mfap3l (ENSCGRG00001017293) #23	Hpf1 (ENSCGRG00001019103) #26	Clcn3 (ENSCGRG00001022469) #27	Nek1 (ENSCGRG00001014900) #28	Sh3rf1 (ENSCGRG00001006240) #29	Cbr4 (ENSCGRG00001008452) #30	Palld (ENSCGRG00001009316) #32	Ddx60 (ENSCGRG00001018201) #34	Anxa10 (ENSCGRG00001020615) #35	Spock3 (ENSCGRG00001002033) #36	Tll1 (ENSCGRG00001012198) #37	ENSCGRG00001014910	Cpe (ENSCGRG00001021360)	Msmo1 (ENSCGRG00001022848)	Klhl2 (ENSCGRG00001024220)
Murinae	ANCESTRAL SPECIES	23	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Mus	ANCESTRAL SPECIES	6	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000154107.b.m.b	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000154107.b.m.b	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Ryukyu mouse	MODERN SPECIES	17	Wdr17 (MGP_CAROLIEiJ_G0031057)	Gpm6a (MGP_CAROLIEiJ_G0031058)	MGP_CAROLIEiJ_G0031059	Glra3 (MGP_CAROLIEiJ_G0031060)	Hpgd (MGP_CAROLIEiJ_G0031061) #7	Cep44 (MGP_CAROLIEiJ_G0031062) #8	Fbxo8 (MGP_CAROLIEiJ_G0031063) #9	Hand2 (MGP_CAROLIEiJ_G0031064) #13	Scrg1 (MGP_CAROLIEiJ_G0031065) #15	Sap30 (MGP_CAROLIEiJ_G0031066) #16	Hmgb2 (MGP_CAROLIEiJ_G0031067) #17	Galnt7 (MGP_CAROLIEiJ_G0031068) #18	Galntl6 (MGP_CAROLIEiJ_G0031069) #21	MGP_CAROLIEiJ_G0031070	MGP_CAROLIEiJ_G0031071	Aadat (MGP_CAROLIEiJ_G0031072) #22	Mfap3l (MGP_CAROLIEiJ_G0031073) #23	Hpf1 (MGP_CAROLIEiJ_G0031074) #26	Clcn3 (MGP_CAROLIEiJ_G0031075) #27	Nek1 (MGP_CAROLIEiJ_G0031076) #28	Sh3rf1 (MGP_CAROLIEiJ_G0031077) #29	Cbr4 (MGP_CAROLIEiJ_G0031078) #30	Palld (MGP_CAROLIEiJ_G0031079) #32	Ddx60 (MGP_CAROLIEiJ_G0031080) #34	Anxa10 (MGP_CAROLIEiJ_G0031081) #35	Spock3 (MGP_CAROLIEiJ_G0031082) #36	Tll1 (MGP_CAROLIEiJ_G0031083) #37	Cpe (MGP_CAROLIEiJ_G0031084)	Msmo1 (MGP_CAROLIEiJ_G0031085)	Klhl2 (MGP_CAROLIEiJ_G0031086)	Tmem192 (MGP_CAROLIEiJ_G0031087)
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000154107.b.m.b	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Mouse	MODERN SPECIES	17	Wdr17 (ENSMUSG00000039375)	Gpm6a (ENSMUSG00000031517)	Adam29 (ENSMUSG00000046258)	Glra3 (ENSMUSG00000038257)	Hpgd (ENSMUSG00000031613) #7	Cep44 (ENSMUSG00000038215) #8	Fbxo8 (ENSMUSG00000038206) #9	Hand2 (ENSMUSG00000038193) #13	Scrg1 (ENSMUSG00000031610) #15	Sap30 (ENSMUSG00000031609) #16	Hmgb2 (ENSMUSG00000054717) #17	Galnt7 (ENSMUSG00000031608) #18	Galntl6 (ENSMUSG00000096914) #21	BC030500 (ENSMUSG00000049946)	Gm10283 (ENSMUSG00000070023)	Aadat (ENSMUSG00000057228) #22	Mfap3l (ENSMUSG00000031647) #23	Hpf1 (ENSMUSG00000038005) #26	Clcn3 (ENSMUSG00000004319) #27	Nek1 (ENSMUSG00000031644) #28	Sh3rf1 (ENSMUSG00000031642) #29	Cbr4 (ENSMUSG00000031641) #30	Palld (ENSMUSG00000058056) #32	Ddx60 (ENSMUSG00000037921) #34	Anxa10 (ENSMUSG00000031635) #35	Spock3 (ENSMUSG00000054162) #36	Sgo2b (ENSMUSG00000094443)	Tll1 (ENSMUSG00000053626) #37	Cpe (ENSMUSG00000037852)	Msmo1 (ENSMUSG00000031604)	Klhl2 (ENSMUSG00000031605)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00860000135825	ENSGT00860000135634	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000154107.b.m.b	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
spretus	MODERN SPECIES	17	Wdr17 (MGP_SPRETEiJ_G0032172)	Gpm6a (MGP_SPRETEiJ_G0032173)	Adam29 (MGP_SPRETEiJ_G0032174)	Glra3 (MGP_SPRETEiJ_G0032175)	Hpgd (MGP_SPRETEiJ_G0032176) #7	Cep44 (MGP_SPRETEiJ_G0032177) #8	Fbxo8 (MGP_SPRETEiJ_G0032178) #9	Hand2 (MGP_SPRETEiJ_G0032179) #13	Scrg1 (MGP_SPRETEiJ_G0032180) #15	Sap30 (MGP_SPRETEiJ_G0032181) #16	MGP_SPRETEiJ_G0032182 #17	Galnt7 (MGP_SPRETEiJ_G0032183) #18	Galntl6 (MGP_SPRETEiJ_G0032184) #21	BC030500 (MGP_SPRETEiJ_G0032185)	Gm10283 (MGP_SPRETEiJ_G0032186)	Aadat (MGP_SPRETEiJ_G0032187) #22	Mfap3l (MGP_SPRETEiJ_G0032188) #23	Hpf1 (MGP_SPRETEiJ_G0032189) #26	Clcn3 (MGP_SPRETEiJ_G0032190) #27	Nek1 (MGP_SPRETEiJ_G0032191) #28	Sh3rf1 (MGP_SPRETEiJ_G0032192) #29	Cbr4 (MGP_SPRETEiJ_G0032193) #30	Palld (MGP_SPRETEiJ_G0032194) #32	Anxa10 (MGP_SPRETEiJ_G0032196) #35	Spock3 (MGP_SPRETEiJ_G0032197) #36	MGP_SPRETEiJ_G0032198	Tll1 (MGP_SPRETEiJ_G0032199) #37	Cpe (MGP_SPRETEiJ_G0032200)	Msmo1 (MGP_SPRETEiJ_G0032201)	Klhl2 (MGP_SPRETEiJ_G0032202)	Tmem192 (MGP_SPRETEiJ_G0032203)
Steppe mouse	MODERN SPECIES	225															Gm10283 (ENSMSIG00000022258)	Aadat (ENSMSIG00000022273) #22	ENSMSIG00000022344	ENSMSIG00000022352
Shrew mouse	MODERN SPECIES	10	Spata4 (MGP_PahariEiJ_G0021522)	Wdr17 (MGP_PahariEiJ_G0021523)	Gpm6a (MGP_PahariEiJ_G0021524)	Adam29 (MGP_PahariEiJ_G0021525)	Glra3 (MGP_PahariEiJ_G0021526)	Hpgd (MGP_PahariEiJ_G0021527) #7	MGP_PahariEiJ_G0021528 #8	Fbxo8 (MGP_PahariEiJ_G0021529) #9	Hand2 (MGP_PahariEiJ_G0021530) #13	Scrg1 (MGP_PahariEiJ_G0021531) #15	Sap30 (MGP_PahariEiJ_G0021532) #16	Hmgb2 (MGP_PahariEiJ_G0021533) #17	Galnt7 (MGP_PahariEiJ_G0021534) #18	Galntl6 (MGP_PahariEiJ_G0021535) #21	MGP_PahariEiJ_G0021536	Aadat (MGP_PahariEiJ_G0021537) #22	Mfap3l (MGP_PahariEiJ_G0021538) #23	Hpf1 (MGP_PahariEiJ_G0021539) #26	Clcn3 (MGP_PahariEiJ_G0021540) #27	Nek1 (MGP_PahariEiJ_G0021541) #28	Sh3rf1 (MGP_PahariEiJ_G0021542) #29	Cbr4 (MGP_PahariEiJ_G0021543) #30	Palld (MGP_PahariEiJ_G0021544) #32	MGP_PahariEiJ_G0021545	Anxa10 (MGP_PahariEiJ_G0021546) #35	Spock3 (MGP_PahariEiJ_G0021547) #36	Sgo2b (MGP_PahariEiJ_G0021548)	Tll1 (MGP_PahariEiJ_G0021549) #37	Cpe (MGP_PahariEiJ_G0021550)	Msmo1 (MGP_PahariEiJ_G0021551)	Klhl2 (MGP_PahariEiJ_G0021552)
Rat	MODERN SPECIES	7	Hmgb1 (ENSRNOG00000058908)	Hpgd (ENSRNOG00000010610) #7	Cep44 (ENSRNOG00000010566) #8	ENSRNOG00000062690	Fbxo8 (ENSRNOG00000010502) #9	LOC103694242 (ENSRNOG00000007402)	Hand2 (ENSRNOG00000060448) #13	ENSRNOG00000069425	Scrg1 (ENSRNOG00000069516) #15	Sap30 (ENSRNOG00000013218) #16	Hmgb2 (ENSRNOG00000013167) #17	Galnt7 (ENSRNOG00000012037) #18	Galntl6 (ENSRNOG00000067282) #21	Hmgn2-ps4 (ENSRNOG00000066721)	ENSRNOG00000063109	Aadat (ENSRNOG00000011861) #22	Mfap3l (ENSRNOG00000011775) #23	Ppia-ps13 (ENSRNOG00000062799)	LOC100360260 (ENSRNOG00000060395)	Hpf1 (ENSRNOG00000011293) #26	Clcn3 (ENSRNOG00000010682) #27	Nek1 (ENSRNOG00000010418) #28	Sh3rf1 (ENSRNOG00000010358) #29	Cbr4 (ENSRNOG00000024411) #30	Ddx60 (ENSRNOG00000059097) #34	Palldl1 (ENSRNOG00000010107) #32	LOC120097562 (ENSRNOG00000056947) #34	Anxa10 (ENSRNOG00000014339) #35	Spock3 (ENSRNOG00000029903) #36	AABR07025089.1 (ENSRNOG00000032995)	AABR07025074.1 (ENSRNOG00000032550)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1876																Aadat (ENSNGAG00000014609) #22	Mfap3l (ENSNGAG00000002714) #23	Hpf1 (ENSNGAG00000012861) #26	Clcn3 (ENSNGAG00000015859) #27	Nek1 (ENSNGAG00000013907) #28	Sh3rf1 (ENSNGAG00000018102) #29	Cbr4 (ENSNGAG00000014720) #30	ENSNGAG00000017404 #32	ENSNGAG00000017960 #34	Anxa10 (ENSNGAG00000020093) #35	ENSNGAG00000017956	Spock3 (ENSNGAG00000007048) #36	Tll1 (ENSNGAG00000016771) #37	ENSNGAG00000001360	Cpe (ENSNGAG00000016354)
Lesser Egyptian jerboa	MODERN SPECIES	62	ENSJJAG00000010169	ENSJJAG00000006944	Gpm6a (ENSJJAG00000020024)	Glra3 (ENSJJAG00000011425)	Hpgd (ENSJJAG00000013898) #7	Cep44 (ENSJJAG00000023804) #8	Fbxo8 (ENSJJAG00000000446) #9	ENSJJAG00000010023	Hand2 (ENSJJAG00000015565) #13	ENSJJAG00000010120	Scrg1 (ENSJJAG00000014808) #15	Sap30 (ENSJJAG00000018559) #16	Hmgb2 (ENSJJAG00000009984) #17	Galnt7 (ENSJJAG00000015089) #18	Galntl6 (ENSJJAG00000020664) #21	Aadat (ENSJJAG00000024375) #22	Mfap3l (ENSJJAG00000021487) #23	Hpf1 (ENSJJAG00000011349) #26	Clcn3 (ENSJJAG00000000856) #27	Nek1 (ENSJJAG00000020556) #28	ENSJJAG00000021393	Sh3rf1 (ENSJJAG00000021488) #29	ENSJJAG00000006073	Cbr4 (ENSJJAG00000015283) #30	Palld (ENSJJAG00000000347) #32	ENSJJAG00000000315 #34	Anxa10 (ENSJJAG00000023763) #35	Spock3 (ENSJJAG00000012852) #36	ENSJJAG00000008746	ENSJJAG00000023954	Tll1 (ENSJJAG00000012213) #37
Kangaroo rat	MODERN SPECIES	323	Spata4 (ENSDORG00000002778)	ENSDORG00000026217	ENSDORG00000023707	Gpm6a (ENSDORG00000011732)	Glra3 (ENSDORG00000015747)	Hpgd (ENSDORG00000011326) #7	ENSDORG00000025276 #8	Fbxo8 (ENSDORG00000010989) #9	Hand2 (ENSDORG00000007304) #13	Scrg1 (ENSDORG00000023274) #15	Sap30 (ENSDORG00000025744) #16	Hmgb2 (ENSDORG00000024163) #17	ENSDORG00000026618 #18	ENSDORG00000026508	Galntl6 (ENSDORG00000011826) #21	Aadat (ENSDORG00000005370) #22	Mfap3l (ENSDORG00000024753) #23	ENSDORG00000029352 #26	Clcn3 (ENSDORG00000010932) #27	ENSDORG00000025576 #28	ENSDORG00000024191	Sh3rf1 (ENSDORG00000004433) #29	Cbr4 (ENSDORG00000004432) #30	Palld (ENSDORG00000004430) #32	Ddx60 (ENSDORG00000007349) #34	Anxa10 (ENSDORG00000016695) #35	Spock3 (ENSDORG00000005181) #36	Tll1 (ENSDORG00000007473) #37	Cpe (ENSDORG00000008289)	Msmo1 (ENSDORG00000006807)	Klhl2 (ENSDORG00000016605)
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	110	ASB5 (ENSCLAG00000011261)	SPATA4 (ENSCLAG00000011629)	WDR17 (ENSCLAG00000016000)	GPM6A (ENSCLAG00000017285)	ADAM29 (ENSCLAG00000017816)	GLRA3 (ENSCLAG00000014561)	HPGD (ENSCLAG00000015466) #7	CEP44 (ENSCLAG00000016227) #8	FBXO8 (ENSCLAG00000012922) #9	HAND2 (ENSCLAG00000014433) #13	SCRG1 (ENSCLAG00000014455) #15	SAP30 (ENSCLAG00000013849) #16	HMGB2 (ENSCLAG00000011532) #17	GALNT7 (ENSCLAG00000012394) #18	GALNTL6 (ENSCLAG00000014070) #21	ENSCLAG00000011469 #22	ENSCLAG00000012782 #22	MFAP3L (ENSCLAG00000011811) #23	HPF1 (ENSCLAG00000012272) #26	CLCN3 (ENSCLAG00000013493) #27	NEK1 (ENSCLAG00000013999) #28	SH3RF1 (ENSCLAG00000012679) #29	CBR4 (ENSCLAG00000013243) #30	PALLD (ENSCLAG00000014162) #32	DDX60 (ENSCLAG00000015332) #34	ANXA10 (ENSCLAG00000013504) #35	SPOCK3 (ENSCLAG00000015922) #36	TLL1 (ENSCLAG00000011556) #37	CPE (ENSCLAG00000012208)	MSMO1 (ENSCLAG00000012431)	KLHL2 (ENSCLAG00000012624)
Long-tailed chinchilla	MODERN SPECIES	110	SPATA4 (ENSCLAG00000011629)	WDR17 (ENSCLAG00000016000)	GPM6A (ENSCLAG00000017285)	ADAM29 (ENSCLAG00000017816)	GLRA3 (ENSCLAG00000014561)	HPGD (ENSCLAG00000015466) #7	CEP44 (ENSCLAG00000016227) #8	FBXO8 (ENSCLAG00000012922) #9	HAND2 (ENSCLAG00000014433) #13	SCRG1 (ENSCLAG00000014455) #15	SAP30 (ENSCLAG00000013849) #16	HMGB2 (ENSCLAG00000011532) #17	GALNT7 (ENSCLAG00000012394) #18	GALNTL6 (ENSCLAG00000014070) #21	ENSCLAG00000011469 #22	ENSCLAG00000012782 #22	MFAP3L (ENSCLAG00000011811) #23	HPF1 (ENSCLAG00000012272) #26	CLCN3 (ENSCLAG00000013493) #27	NEK1 (ENSCLAG00000013999) #28	SH3RF1 (ENSCLAG00000012679) #29	CBR4 (ENSCLAG00000013243) #30	PALLD (ENSCLAG00000014162) #32	DDX60 (ENSCLAG00000015332) #34	ANXA10 (ENSCLAG00000013504) #35	SPOCK3 (ENSCLAG00000015922) #36	TLL1 (ENSCLAG00000011556) #37	CPE (ENSCLAG00000012208)	MSMO1 (ENSCLAG00000012431)	KLHL2 (ENSCLAG00000012624)	TMEM192 (ENSCLAG00000014967)
Degu	MODERN SPECIES	162	ASB5 (ENSODEG00000012431)	SPATA4 (ENSODEG00000011174)	WDR17 (ENSODEG00000012341)	GPM6A (ENSODEG00000011825)	ADAM29 (ENSODEG00000011881)	GLRA3 (ENSODEG00000012317)	HPGD (ENSODEG00000011658) #7	ENSODEG00000011812 #8	FBXO8 (ENSODEG00000012698) #9	ENSODEG00000011991	HAND2 (ENSODEG00000013288) #13	SCRG1 (ENSODEG00000019896) #15	SAP30 (ENSODEG00000011600) #16	GALNT7 (ENSODEG00000011574) #18	GALNTL6 (ENSODEG00000012085) #21	AADAT (ENSODEG00000012149) #22	MFAP3L (ENSODEG00000011832) #23	ENSODEG00000019907	HPF1 (ENSODEG00000012162) #26	CLCN3 (ENSODEG00000013010) #27	ENSODEG00000012680 #28	ENSODEG00000012713	ENSODEG00000013623	SH3RF1 (ENSODEG00000013733) #29	ENSODEG00000011785	CBR4 (ENSODEG00000012444) #30	PALLD (ENSODEG00000014277) #32	ANXA10 (ENSODEG00000012255) #35
Guinea pig	MODERN SPECIES	36	SPCS3 (ENSCPOG00000008544)	ASB5 (ENSCPOG00000013084)	SPATA4 (ENSCPOG00000024215)	WDR17 (ENSCPOG00000019958)	GPM6A (ENSCPOG00000030014)	GLRA3 (ENSCPOG00000012157)	Hpgd (ENSCPOG00000001979) #7	CEP44 (ENSCPOG00000013247) #8	FBXO8 (ENSCPOG00000010347) #9	HAND2 (ENSCPOG00000036252) #13	SCRG1 (ENSCPOG00000001738) #15	SAP30 (ENSCPOG00000001736) #16	HMGB2 (ENSCPOG00000003552) #17	GALNT7 (ENSCPOG00000031800) #18	GALNTL6 (ENSCPOG00000015730) #21	AADAT (ENSCPOG00000002095) #22	MFAP3L (ENSCPOG00000034181) #23	ENSCPOG00000036810 #26	CLCN3 (ENSCPOG00000000904) #27	NEK1 (ENSCPOG00000000339) #28	SH3RF1 (ENSCPOG00000006420) #29	CBR4 (ENSCPOG00000030172) #30	PALLD (ENSCPOG00000007893) #32	DDX60 (ENSCPOG00000008326) #34	ANXA10 (ENSCPOG00000008321) #35
Naked mole-rat female	MODERN SPECIES	25	CEP44 (ENSHGLG00000007002) #8	FBXO8 (ENSHGLG00000015555) #9	HAND2 (ENSHGLG00000044998) #13	ENSHGLG00000033456	ENSHGLG00000049277	SCRG1 (ENSHGLG00000007293) #15	SAP30 (ENSHGLG00000040295) #16	ENSHGLG00000040741 #17	ENSHGLG00000009032 #18	ENSHGLG00000020563	ENSHGLG00000005258 #21	ENSHGLG00000037597	ENSHGLG00000007421	ENSHGLG00000037600	ENSHGLG00000042689	AADAT (ENSHGLG00000046534) #22	ENSHGLG00000011567	MFAP3L (ENSHGLG00000010673) #23	ENSHGLG00000047060	HPF1 (ENSHGLG00000009625) #26	CLCN3 (ENSHGLG00000007901) #27	NEK1 (ENSHGLG00000012517) #28	SH3RF1 (ENSHGLG00000016975) #29	ENSHGLG00000032370 #30	PALLD (ENSHGLG00000015506) #32	ENSHGLG00000034493 #19	ENSHGLG00000013790 #34	ENSHGLG00000050525 #34	ANXA10 (ENSHGLG00000001262) #35	ENSHGLG00000035113 #36	ENSHGLG00000039306
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460.v #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460.v #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Marmotini_b	ANCESTRAL SPECIES	161	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460.v #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35
Arctic ground squirrel	MODERN SPECIES	72		GPM6A (ENSUPAG00010015550)	ADAM29 (ENSUPAG00010015545)	GLRA3 (ENSUPAG00010015528)	HPGD (ENSUPAG00010015503) #7	CEP44 (ENSUPAG00010015450) #8	FBXO8 (ENSUPAG00010015428) #9	ENSUPAG00010015420	HAND2 (ENSUPAG00010015409) #13	ENSUPAG00010015393	SCRG1 (ENSUPAG00010015386) #15	SAP30 (ENSUPAG00010015378) #16	HMGB2 (ENSUPAG00010015373) #17	GALNT7 (ENSUPAG00010015336) #18	GALNTL6 (ENSUPAG00010015314) #21	AADAT (ENSUPAG00010015280) #22	MFAP3L (ENSUPAG00010015272) #23	HPF1 (ENSUPAG00010015256) #26	CLCN3 (ENSUPAG00010015211) #27	NEK1 (ENSUPAG00010014846) #28	SH3RF1 (ENSUPAG00010014800) #29	CBR4 (ENSUPAG00010014791) #30	ENSUPAG00010014784	PALLD (ENSUPAG00010014559) #32	ENSUPAG00010014517	ANXA10 (ENSUPAG00010014468) #35
Squirrel	MODERN SPECIES	116	GPM6A (ENSSTOG00000023117)	ADAM29 (ENSSTOG00000025632)	GLRA3 (ENSSTOG00000005897)	HPGD (ENSSTOG00000025253) #7	ENSSTOG00000030307	CEP44 (ENSSTOG00000012395) #8	FBXO8 (ENSSTOG00000012389) #9	HAND2 (ENSSTOG00000023020) #13	ENSSTOG00000021612	SCRG1 (ENSSTOG00000011513) #15	SAP30 (ENSSTOG00000027418) #16	HMGB2 (ENSSTOG00000023980) #17	GALNT7 (ENSSTOG00000021543) #18	ENSSTOG00000009469	GALNTL6 (ENSSTOG00000009474) #21	AADAT (ENSSTOG00000021624) #22	MFAP3L (ENSSTOG00000023444) #23	ENSSTOG00000001481 #26	CLCN3 (ENSSTOG00000001473) #27	NEK1 (ENSSTOG00000026470) #28	SH3RF1 (ENSSTOG00000014205) #29	CBR4 (ENSSTOG00000026243) #30	PALLD (ENSSTOG00000010414) #32	DDX60 (ENSSTOG00000016257) #34	ANXA10 (ENSSTOG00000009507) #35
Alpin marmot	MODERN SPECIES	17	WDR17 (ENSMMMG00000012914)	GPM6A (ENSMMMG00000013073)	ADAM29 (ENSMMMG00000013127)	ENSMMMG00000013158	GLRA3 (ENSMMMG00000013188)	HPGD (ENSMMMG00000014081) #7	CEP44 (ENSMMMG00000014097) #8	FBXO8 (ENSMMMG00000014117) #9	HAND2 (ENSMMMG00000014142) #13	SCRG1 (ENSMMMG00000014153) #15	SAP30 (ENSMMMG00000014160) #16	ENSMMMG00000014173 #17	GALNT7 (ENSMMMG00000014182) #18	GALNTL6 (ENSMMMG00000014240) #21	ENSMMMG00000014269	AADAT (ENSMMMG00000014288) #22	MFAP3L (ENSMMMG00000014303) #23	HPF1 (ENSMMMG00000014313) #26	CLCN3 (ENSMMMG00000014320) #27	NEK1 (ENSMMMG00000014666) #28	SH3RF1 (ENSMMMG00000014962) #29	CBR4 (ENSMMMG00000014978) #30	PALLD (ENSMMMG00000014986) #32	DDX60 (ENSMMMG00000015007) #34	ANXA10 (ENSMMMG00000015085) #35	SPOCK3 (ENSMMMG00000015114) #36	TLL1 (ENSMMMG00000015190) #37	CPE (ENSMMMG00000015202)	ENSMMMG00000015220	KLHL2 (ENSMMMG00000015232)	TMEM192 (ENSMMMG00000015247)
Eurasian red squirrel	MODERN SPECIES	14	WDR17 (ENSSVLG00005002773)	ENSSVLG00005002719	GPM6A (ENSSVLG00005002667)	ENSSVLG00005002637	ENSSVLG00005002611	GLRA3 (ENSSVLG00005002568)	ENSSVLG00005002462 #7	CEP44 (ENSSVLG00005002394) #8	ENSSVLG00005002353 #9	HAND2 (ENSSVLG00005002329) #13	SCRG1 (ENSSVLG00005002314) #15	SAP30 (ENSSVLG00005002302) #16	ENSSVLG00005002287 #17	GALNT7 (ENSSVLG00005002249) #18	GALNTL6 (ENSSVLG00005002203) #21	AADAT (ENSSVLG00005002134) #22	MFAP3L (ENSSVLG00005002117) #23	HPF1 (ENSSVLG00005002099) #26	CLCN3 (ENSSVLG00005002005) #27	NEK1 (ENSSVLG00005001904) #28	SH3RF1 (ENSSVLG00005001800) #29	ENSSVLG00005001764 #30	ENSSVLG00005001751	PALLD (ENSSVLG00005001640) #32	ENSSVLG00005001553 #34	ANXA10 (ENSSVLG00005001520) #35	SPOCK3 (ENSSVLG00005001298) #36	ENSSVLG00005001107	TLL1 (ENSSVLG00005001039) #37	ENSSVLG00005000996	CPE (ENSSVLG00005000975)
Lagomorpha	ANCESTRAL SPECIES	32	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34
Rabbit	MODERN SPECIES	11	ENSOCUG00000013889	GLRA3 (ENSOCUG00000017638)	HPGD (ENSOCUG00000016289) #7	ENSOCUG00000026425	CEP44 (ENSOCUG00000013963) #8	FBXO8 (ENSOCUG00000008888) #9	ENSOCUG00000023773	ENSOCUG00000016256 #13	SCRG1 (ENSOCUG00000000616) #15	SAP30 (ENSOCUG00000010418) #16	ENSOCUG00000000074 #17	GALNT7 (ENSOCUG00000011080) #18	ENSOCUG00000031901	ENSOCUG00000038954	GALNTL6 (ENSOCUG00000000888) #21	AADAT (ENSOCUG00000011526) #22	MFAP3L (ENSOCUG00000011514) #23	ENSOCUG00000036380	HPF1 (ENSOCUG00000026923) #26	CLCN3 (ENSOCUG00000006220) #27	NEK1 (ENSOCUG00000016756) #28	ENSOCUG00000031550	ENSOCUG00000038117	SH3RF1 (ENSOCUG00000003098) #29	CBR4 (ENSOCUG00000006446) #30	PALLD (ENSOCUG00000004900) #32	ENSOCUG00000029856	DDX60 (ENSOCUG00000006355) #34	ENTPD4 (ENSOCUG00000004102)	SLC25A37 (ENSOCUG00000004114)	NKX3-1 (ENSOCUG00000004294)
Pika	MODERN SPECIES	4532																ENSOPRG00000004564 #22	ENSOPRG00000004559 #23
Laurasiatheria	ANCESTRAL SPECIES	11				ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000004594 #22
Hedgehog	MODERN SPECIES	1217																AADAT (ENSEEUG00000006173) #22
Common shrew	MODERN SPECIES	754																AADAT (ENSSARG00000013843) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000001538	ENSGT00390000008918.b	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000162672.j	ENSGT00390000008918.b	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Suina	ANCESTRAL SPECIES	42	ENSGT00390000001862	ENSGT00940000169471	ENSGT00400000024366	ENSGT00940000166695	ENSGT00940000162672.i	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35
Chacoan peccary	MODERN SPECIES	813	DEFB136 (ENSCWAG00000017727)	ENSCWAG00000017708	DEFB134 (ENSCWAG00000017686)	ENSCWAG00000017613	ENSCWAG00000017497	GLRA3 (ENSCWAG00000017343)	HPGD (ENSCWAG00000016995) #7	CEP44 (ENSCWAG00000016941) #8	FBXO8 (ENSCWAG00000016913) #9	HAND2 (ENSCWAG00000016898) #13	SCRG1 (ENSCWAG00000016879) #15	SAP30 (ENSCWAG00000016859) #16	HMGB2 (ENSCWAG00000016834) #17	GALNT7 (ENSCWAG00000016687) #18	GALNTL6 (ENSCWAG00000016539) #21	AADAT (ENSCWAG00000016365) #22	MFAP3L (ENSCWAG00000016319) #23	HPF1 (ENSCWAG00000016290) #26	CLCN3 (ENSCWAG00000014882) #27	NEK1 (ENSCWAG00000014571) #28	SH3RF1 (ENSCWAG00000014519) #29	CBR4 (ENSCWAG00000014477) #30	PALLD (ENSCWAG00000013933) #32	DDX60 (ENSCWAG00000013626) #34	ANXA10 (ENSCWAG00000013515) #35	ENSCWAG00000013437
Pig	MODERN SPECIES	5	GLRA3 (ENSSSCG00000009698)	HPGD (ENSSSCG00000009699) #7	ENSSSCG00000034592	CEP44 (ENSSSCG00000032475) #8	FBXO8 (ENSSSCG00000009702) #9	HAND2 (ENSSSCG00000031537) #13	ENSSSCG00000059603	SCRG1 (ENSSSCG00000032048) #15	SAP30 (ENSSSCG00000030118) #16	HMGB2 (ENSSSCG00000009704) #17	GALNT7 (ENSSSCG00000009705) #18	GALNTL6 (ENSSSCG00000021805) #21	ENSSSCG00000042330	ENSSSCG00000042965	ENSSSCG00000031747	AADAT (ENSSSCG00000009708) #22	MFAP3L (ENSSSCG00000009709) #23	ENSSSCG00000009710	HPF1 (ENSSSCG00000009711) #26	CLCN3 (ENSSSCG00000009713) #27	NEK1 (ENSSSCG00000009714) #28	SH3RF1 (ENSSSCG00000009716) #29	CBR4 (ENSSSCG00000009717) #30	PALLD (ENSSSCG00000029331) #32	ENSSSCG00000045143	DDX60 (ENSSSCG00000009720) #34	ANXA10 (ENSSSCG00000030058) #35	ENSSSCG00000062791	SPOCK3 (ENSSSCG00000009722) #36	ZNF268 (ENSSSCG00000035148)	ENSSSCG00000035929
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000162672.j	ENSGT00390000008918.b	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000169471	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000158680	ENSGT00390000001862	ENSGT00940000169471	ENSGT00390000001538	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.u #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000158680	ENSGT00390000001862	ENSGT00940000169471	ENSGT00390000001538	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.u #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Sperm whale	MODERN SPECIES	20	ENSPCTG00005002852	ADAM29 (ENSPCTG00005002859)	GLRA3 (ENSPCTG00005002886)	HPGD (ENSPCTG00005002951) #7	CEP44 (ENSPCTG00005003011) #8	FBXO8 (ENSPCTG00005003064) #9	ENSPCTG00005003074	HAND2 (ENSPCTG00005003086) #13	ENSPCTG00005003097	SCRG1 (ENSPCTG00005003107) #15	SAP30 (ENSPCTG00005003116) #16	ENSPCTG00005003135 #17	GALNT7 (ENSPCTG00005003147) #18	GALNTL6 (ENSPCTG00005003168) #21	ENSPCTG00005003191	AADAT (ENSPCTG00005003210) #22	ENSPCTG00005003280	MFAP3L (ENSPCTG00005003291) #23	HPF1 (ENSPCTG00005003301) #26	CLCN3 (ENSPCTG00005003330) #27	NEK1 (ENSPCTG00005003444) #28	SH3RF1 (ENSPCTG00005003650) #29	CBR4 (ENSPCTG00005003665) #30	PALLD (ENSPCTG00005003699) #32	ENSPCTG00005003724 #32	DDX60 (ENSPCTG00005003746) #34	ANXA10 (ENSPCTG00005003784) #35	SPOCK3 (ENSPCTG00005003826) #36
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00390000016034	ENSGT00940000158680	ENSGT00390000001862	ENSGT00940000169471	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.u #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	4045																ENSTTRG00000012843 #22
Dolphin	MODERN SPECIES	2925																ENSTTRG00000012697 #22
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000016034	ENSGT00940000158680	ENSGT00390000001862	ENSGT00940000169471	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.u #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Vaquita	MODERN SPECIES	17	DEFB136 (ENSPSNG00000016189)	ENSPSNG00000016220	ADAM29 (ENSPSNG00000016269)	GLRA3 (ENSPSNG00000016363)	ENSPSNG00000016596	HPGD (ENSPSNG00000016668) #7	ENSPSNG00000016980	CEP44 (ENSPSNG00000017022) #8	FBXO8 (ENSPSNG00000017072) #9	HAND2 (ENSPSNG00000017116) #13	SCRG1 (ENSPSNG00000017271) #15	SAP30 (ENSPSNG00000017304) #16	HMGB2 (ENSPSNG00000017346) #17	GALNT7 (ENSPSNG00000017394) #18	GALNTL6 (ENSPSNG00000017481) #21	AADAT (ENSPSNG00000017772) #22	MFAP3L (ENSPSNG00000018082) #23	HPF1 (ENSPSNG00000018128) #26	CLCN3 (ENSPSNG00000018195) #27	NEK1 (ENSPSNG00000018414) #28	SH3RF1 (ENSPSNG00000018644) #29	ENSPSNG00000018703	ENSPSNG00000018736 #30	ENSPSNG00000018793	PALLD (ENSPSNG00000018806) #32	ENSPSNG00000018859 #32	DDX60 (ENSPSNG00000018925) #34	ANXA10 (ENSPSNG00000019199) #35	SPOCK3 (ENSPSNG00000019419) #36
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000004594 #22
Beluga whale	MODERN SPECIES	161																AADAT (ENSDLEG00000017956) #22
Blue whale	MODERN SPECIES	17	FDFT1 (ENSBMSG00010011948)	CTSB (ENSBMSG00010011929)	DEFB136 (ENSBMSG00010011919)	ENSBMSG00010011905	ADAM29 (ENSBMSG00010011886)	GLRA3 (ENSBMSG00010011860)	HPGD (ENSBMSG00010011777) #7	CEP44 (ENSBMSG00010011744) #8	FBXO8 (ENSBMSG00010011725) #9	HAND2 (ENSBMSG00010011710) #13	SCRG1 (ENSBMSG00010011704) #15	SAP30 (ENSBMSG00010011690) #16	ENSBMSG00010011680 #17	GALNT7 (ENSBMSG00010011669) #18	GALNTL6 (ENSBMSG00010011646) #21	AADAT (ENSBMSG00010011616) #22	MFAP3L (ENSBMSG00010011570) #23	ENSBMSG00010011562	HPF1 (ENSBMSG00010011546) #26	CLCN3 (ENSBMSG00010011511) #27	NEK1 (ENSBMSG00010011444) #28	SH3RF1 (ENSBMSG00010011397) #29	CBR4 (ENSBMSG00010011378) #30	PALLD (ENSBMSG00010011356) #32	ENSBMSG00010011345 #32	DDX60 (ENSBMSG00010011284) #34	ANXA10 (ENSBMSG00010011252) #35	SPOCK3 (ENSBMSG00010010950) #36
Pecora	ANCESTRAL SPECIES	36	ENSGT00940000169471	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Percora_a	DUPLICATION
Percora_a	ANCESTRAL SPECIES	24	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bovidae	ANCESTRAL SPECIES	14	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bovinae	ANCESTRAL SPECIES	39	ENSGT00940000162672.j.a.b	ENSGT00940000162672.j.b	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bos	ANCESTRAL SPECIES	10	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876.x.b #26	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Wild yak	MODERN SPECIES	497															ENSBMUG00000019179 #22	ENSBMUG00000019127 #22	MFAP3L (ENSBMUG00000019078) #23	ENSBMUG00000019064 #26	CLCN3 (ENSBMUG00000018956) #27	NEK1 (ENSBMUG00000018807) #28	SH3RF1 (ENSBMUG00000018556) #29	CBR4 (ENSBMUG00000018507) #30	ENSBMUG00000018484 #32	ENSBMUG00000018455 #32	ANXA10 (ENSBMUG00000018439) #35	MFSD14B (ENSBMUG00000018431)
Domestic yak	MODERN SPECIES	26	HPGD (ENSBGRG00000011030) #7	ENSBGRG00000011615	ENSBGRG00000011643	CEP44 (ENSBGRG00000011688) #8	FBXO8 (ENSBGRG00000011901) #9	ENSBGRG00000011973 #13	ENSBGRG00000012036	SCRG1 (ENSBGRG00000012051) #15	SAP30 (ENSBGRG00000012097) #16	HMGB2 (ENSBGRG00000012160) #17	GALNT7 (ENSBGRG00000012232) #18	GALNTL6 (ENSBGRG00000012548) #21	ENSBGRG00000012750 #21	ZNF770 (ENSBGRG00000012811)	ENSBGRG00000012868 #22	ENSBGRG00000013531 #22	MFAP3L (ENSBGRG00000014155) #23	ENSBGRG00000014201 #26	CLCN3 (ENSBGRG00000014279) #27	NEK1 (ENSBGRG00000014664) #28	SH3RF1 (ENSBGRG00000015017) #29	CBR4 (ENSBGRG00000015246) #30	ENSBGRG00000015322 #32	ENSBGRG00000015401	ENSBGRG00000015419 #32	ANXA10 (ENSBGRG00000015476) #35	MFSD14B (ENSBGRG00000015700)
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.s #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.a.b.b	ENSGT00940000156081
Hybrid Bos Indicus	MODERN SPECIES	27	GLRA3 (ENSBIXG00005029159)	HPGD (ENSBIXG00005001731) #7	ENSBIXG00005029194	ENSBIXG00005005240	CEP44 (ENSBIXG00005005262) #8	FBXO8 (ENSBIXG00005030957) #9	HAND2 (ENSBIXG00005030942) #13	ENSBIXG00005030937	SCRG1 (ENSBIXG00005030931) #15	SAP30 (ENSBIXG00005030926) #16	ENSBIXG00005030919 #17	GALNT7 (ENSBIXG00005030901) #18	ENSBIXG00005030886	GALNTL6 (ENSBIXG00005030879) #21	ENSBIXG00005030838 #22	ENSBIXG00005030820 #22	MFAP3L (ENSBIXG00005030798) #23	ENSBIXG00005030781	ENSBIXG00005030777	ENSBIXG00005030766 #26	CLCN3 (ENSBIXG00005030745) #27	NEK1 (ENSBIXG00005030686) #28	SH3RF1 (ENSBIXG00005030634) #29	CBR4 (ENSBIXG00005030601) #30	ENSBIXG00005030581	ENSBIXG00005030576	PALLD (ENSBIXG00005030509) #32	ANXA10 (ENSBIXG00005030434) #35	ENSBIXG00005030423	MFSD14B (ENSBIXG00005030414)
Cow	MODERN SPECIES	27	ENSBTAG00000053818	GLRA3 (ENSBTAG00000019732)	HPGD (ENSBTAG00000025942) #7	ENSBTAG00000049148	CEP44 (ENSBTAG00000020055) #8	FBXO8 (ENSBTAG00000006715) #9	HAND2 (ENSBTAG00000044123) #13	SCRG1 (ENSBTAG00000012535) #15	SAP30 (ENSBTAG00000015578) #16	HMGB2 (ENSBTAG00000015101) #17	GALNT7 (ENSBTAG00000016845) #18	GALNTL6 (ENSBTAG00000035007) #21	ENSBTAG00000048627	ENSBTAG00000053219	AADAT (ENSBTAG00000010326) #22	AADAT (ENSBTAG00000050967) #22	MFAP3L (ENSBTAG00000019539) #23	ENSBTAG00000035293	HPF1 (ENSBTAG00000020132) #26	CLCN3 (ENSBTAG00000020130) #27	NEK1 (ENSBTAG00000026915) #28	SH3RF1 (ENSBTAG00000001508) #29	CBR4 (ENSBTAG00000022013) #30	PALLD (ENSBTAG00000001081) #32	ANXA10 (ENSBTAG00000004944) #35	ENSBTAG00000053235	MFSD14B (ENSBTAG00000003124)	OR2T13 (ENSBTAG00000050937)
American bison	MODERN SPECIES	3230														ENSBBBG00000013607	ENSBBBG00000007167 #22	ENSBBBG00000002821 #22	MFAP3L (ENSBBBG00000013543) #23	ENSBBBG00000002796	ENSBBBG00000013531 #26	CLCN3 (ENSBBBG00000013511) #27	NEK1 (ENSBBBG00000013395) #28	SH3RF1 (ENSBBBG00000013248) #29	CBR4 (ENSBBBG00000013225) #30	PALLD (ENSBBBG00000002664) #32	ANXA10 (ENSBBBG00000002635) #35	ENSBBBG00000013102	MFSD14B (ENSBBBG00000013086)
Caprinae	ANCESTRAL SPECIES	43	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.q.a.a #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081	ENSGT00940000154950.k.a.b
Goat	MODERN SPECIES	27	ENSCHIG00000008513	ENSCHIG00000018040	GLRA3 (ENSCHIG00000011485)	HPGD (ENSCHIG00000024739) #7	CEP44 (ENSCHIG00000026241) #8	FBXO8 (ENSCHIG00000024422) #9	HAND2 (ENSCHIG00000012433) #13	SCRG1 (ENSCHIG00000020578) #15	SAP30 (ENSCHIG00000016394) #16	ENSCHIG00000011113 #17	GALNT7 (ENSCHIG00000010238) #18	GALNTL6 (ENSCHIG00000010541) #21	ENSCHIG00000026171 #21	ENSCHIG00000010341	ENSCHIG00000009448 #22	ENSCHIG00000025032 #22	MFAP3L (ENSCHIG00000012062) #23	HPF1 (ENSCHIG00000011299) #26	CLCN3 (ENSCHIG00000019301) #27	NEK1 (ENSCHIG00000021097) #28	SH3RF1 (ENSCHIG00000023360) #29	CBR4 (ENSCHIG00000026304) #30	PALLD (ENSCHIG00000026232) #32	ANXA10 (ENSCHIG00000014729) #35	MFSD14B (ENSCHIG00000015957)	ENSCHIG00000008407
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020008537	ADAM29 (ENSOARG00020008583)	GLRA3 (ENSOARG00020008815)	ENSOARG00020009188	CEP44 (ENSOARG00020009221) #8	FBXO8 (ENSOARG00020009418) #9	HAND2 (ENSOARG00020009532) #13	SCRG1 (ENSOARG00020009556) #15	SAP30 (ENSOARG00020009592) #16	GALNT7 (ENSOARG00020009661) #18	ENSOARG00020010317 #17	GALNTL6 (ENSOARG00020010374) #21	ENSOARG00020010526	ENSOARG00020010640 #22	ENSOARG00020010802	ENSOARG00020010854 #22	MFAP3L (ENSOARG00020011097) #23	HPF1 (ENSOARG00020011167) #26	CLCN3 (ENSOARG00020011269) #27	NEK1 (ENSOARG00020011937) #28	SH3RF1 (ENSOARG00020013929) #29	CBR4 (ENSOARG00020014077) #30	PALLD (ENSOARG00020014210) #32	ANXA10 (ENSOARG00020015044) #35	MFSD14B (ENSOARG00020015113)	ENSOARG00020015375	ENSOARG00020015399	ENSOARG00020015411	LGSN (ENSOARG00020015419)	OCA2 (ENSOARG00020015487)	HERC2 (ENSOARG00020015875)
Siberian musk deer	MODERN SPECIES	1157															ENSMMSG00000021304 #22	ENSMMSG00000021362 #22	MFAP3L (ENSMMSG00000021432) #23	HPF1 (ENSMMSG00000021456) #26	CLCN3 (ENSMMSG00000021501) #27	NEK1 (ENSMMSG00000021655) #28	SH3RF1 (ENSMMSG00000021895) #29	CBR4 (ENSMMSG00000021914) #30	PALLD (ENSMMSG00000021975) #32	ANXA10 (ENSMMSG00000022200) #35	MFSD14B (ENSMMSG00000022231)	ENSMMSG00000022271	ENSMMSG00000022289	ENSMMSG00000022303	ENSMMSG00000022312	ENSMMSG00000022322	ENSMMSG00000022342
Percora_a	ANCESTRAL SPECIES	24	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bovidae	ANCESTRAL SPECIES	14	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bovinae	ANCESTRAL SPECIES	39	ENSGT00390000001538	ENSGT00940000162672.j.a.b	ENSGT00940000162672.j.b	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bos	ANCESTRAL SPECIES	10	ENSGT00940000162672.j.b.a	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876.x.b #26	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Bos_a	ANCESTRAL SPECIES	50	ENSGT00940000162672.j.b.a	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081
Wild yak	MODERN SPECIES	497																ENSBMUG00000019179 #22	ENSBMUG00000019127 #22	MFAP3L (ENSBMUG00000019078) #23	ENSBMUG00000019064 #26	CLCN3 (ENSBMUG00000018956) #27	NEK1 (ENSBMUG00000018807) #28	SH3RF1 (ENSBMUG00000018556) #29	CBR4 (ENSBMUG00000018507) #30	ENSBMUG00000018484 #32	ENSBMUG00000018455 #32	ANXA10 (ENSBMUG00000018439) #35	MFSD14B (ENSBMUG00000018431)
Domestic yak	MODERN SPECIES	26	GLRA3 (ENSBGRG00000010756)	HPGD (ENSBGRG00000011030) #7	ENSBGRG00000011615	ENSBGRG00000011643	CEP44 (ENSBGRG00000011688) #8	FBXO8 (ENSBGRG00000011901) #9	ENSBGRG00000011973 #13	ENSBGRG00000012036	SCRG1 (ENSBGRG00000012051) #15	SAP30 (ENSBGRG00000012097) #16	HMGB2 (ENSBGRG00000012160) #17	GALNT7 (ENSBGRG00000012232) #18	GALNTL6 (ENSBGRG00000012548) #21	ENSBGRG00000012750 #21	ZNF770 (ENSBGRG00000012811)	ENSBGRG00000012868 #22	ENSBGRG00000013531 #22	MFAP3L (ENSBGRG00000014155) #23	ENSBGRG00000014201 #26	CLCN3 (ENSBGRG00000014279) #27	NEK1 (ENSBGRG00000014664) #28	SH3RF1 (ENSBGRG00000015017) #29	CBR4 (ENSBGRG00000015246) #30	ENSBGRG00000015322 #32	ENSBGRG00000015401	ENSBGRG00000015419 #32	ANXA10 (ENSBGRG00000015476) #35	MFSD14B (ENSBGRG00000015700)
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000162672.j.b.a	ENSGT00940000162672.i	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT01100000263480.a.a.a.b.a.a.b.a.a.b.b	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.a.b.b.b.a.b.b.a	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.s #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000005589.a.b.j	ENSGT00390000014876.w #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.a.a.b.b	ENSGT00940000156081
Cow	MODERN SPECIES	27	ENSBTAG00000025954	ENSBTAG00000053818	GLRA3 (ENSBTAG00000019732)	HPGD (ENSBTAG00000025942) #7	ENSBTAG00000049148	CEP44 (ENSBTAG00000020055) #8	FBXO8 (ENSBTAG00000006715) #9	HAND2 (ENSBTAG00000044123) #13	SCRG1 (ENSBTAG00000012535) #15	SAP30 (ENSBTAG00000015578) #16	HMGB2 (ENSBTAG00000015101) #17	GALNT7 (ENSBTAG00000016845) #18	GALNTL6 (ENSBTAG00000035007) #21	ENSBTAG00000048627	ENSBTAG00000053219	AADAT (ENSBTAG00000010326) #22	AADAT (ENSBTAG00000050967) #22	MFAP3L (ENSBTAG00000019539) #23	ENSBTAG00000035293	HPF1 (ENSBTAG00000020132) #26	CLCN3 (ENSBTAG00000020130) #27	NEK1 (ENSBTAG00000026915) #28	SH3RF1 (ENSBTAG00000001508) #29	CBR4 (ENSBTAG00000022013) #30	PALLD (ENSBTAG00000001081) #32	ANXA10 (ENSBTAG00000004944) #35	ENSBTAG00000053235	MFSD14B (ENSBTAG00000003124)	OR2T13 (ENSBTAG00000050937)
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005001827	GLRA3 (ENSBIXG00005029159)	HPGD (ENSBIXG00005001731) #7	ENSBIXG00005029194	ENSBIXG00005005240	CEP44 (ENSBIXG00005005262) #8	FBXO8 (ENSBIXG00005030957) #9	HAND2 (ENSBIXG00005030942) #13	ENSBIXG00005030937	SCRG1 (ENSBIXG00005030931) #15	SAP30 (ENSBIXG00005030926) #16	ENSBIXG00005030919 #17	GALNT7 (ENSBIXG00005030901) #18	ENSBIXG00005030886	GALNTL6 (ENSBIXG00005030879) #21	ENSBIXG00005030838 #22	ENSBIXG00005030820 #22	MFAP3L (ENSBIXG00005030798) #23	ENSBIXG00005030781	ENSBIXG00005030777	ENSBIXG00005030766 #26	CLCN3 (ENSBIXG00005030745) #27	NEK1 (ENSBIXG00005030686) #28	SH3RF1 (ENSBIXG00005030634) #29	CBR4 (ENSBIXG00005030601) #30	ENSBIXG00005030581	ENSBIXG00005030576	PALLD (ENSBIXG00005030509) #32	ANXA10 (ENSBIXG00005030434) #35	ENSBIXG00005030423	MFSD14B (ENSBIXG00005030414)
American bison	MODERN SPECIES	3230															ENSBBBG00000013607	ENSBBBG00000007167 #22	ENSBBBG00000002821 #22	MFAP3L (ENSBBBG00000013543) #23	ENSBBBG00000002796	ENSBBBG00000013531 #26	CLCN3 (ENSBBBG00000013511) #27	NEK1 (ENSBBBG00000013395) #28	SH3RF1 (ENSBBBG00000013248) #29	CBR4 (ENSBBBG00000013225) #30	PALLD (ENSBBBG00000002664) #32	ANXA10 (ENSBBBG00000002635) #35	ENSBBBG00000013102	MFSD14B (ENSBBBG00000013086)
Caprinae	ANCESTRAL SPECIES	43	ENSGT00400000024366	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672.j	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.q.a.a #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.f #22	ENSGT00390000004594.e #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35	ENSGT00940000156081	ENSGT00940000154950.k.a.b
Goat	MODERN SPECIES	27	DEFB134 (ENSCHIG00000014361)	ENSCHIG00000008513	ENSCHIG00000018040	GLRA3 (ENSCHIG00000011485)	HPGD (ENSCHIG00000024739) #7	CEP44 (ENSCHIG00000026241) #8	FBXO8 (ENSCHIG00000024422) #9	HAND2 (ENSCHIG00000012433) #13	SCRG1 (ENSCHIG00000020578) #15	SAP30 (ENSCHIG00000016394) #16	ENSCHIG00000011113 #17	GALNT7 (ENSCHIG00000010238) #18	GALNTL6 (ENSCHIG00000010541) #21	ENSCHIG00000026171 #21	ENSCHIG00000010341	ENSCHIG00000009448 #22	ENSCHIG00000025032 #22	MFAP3L (ENSCHIG00000012062) #23	HPF1 (ENSCHIG00000011299) #26	CLCN3 (ENSCHIG00000019301) #27	NEK1 (ENSCHIG00000021097) #28	SH3RF1 (ENSCHIG00000023360) #29	CBR4 (ENSCHIG00000026304) #30	PALLD (ENSCHIG00000026232) #32	ANXA10 (ENSCHIG00000014729) #35	MFSD14B (ENSCHIG00000015957)	ENSCHIG00000008407
Rambouillet Sheep	MODERN SPECIES	11	DEFB135 (ENSOARG00020008458)	ENSOARG00020008498	ENSOARG00020008537	ADAM29 (ENSOARG00020008583)	GLRA3 (ENSOARG00020008815)	ENSOARG00020009188	CEP44 (ENSOARG00020009221) #8	FBXO8 (ENSOARG00020009418) #9	HAND2 (ENSOARG00020009532) #13	SCRG1 (ENSOARG00020009556) #15	SAP30 (ENSOARG00020009592) #16	GALNT7 (ENSOARG00020009661) #18	ENSOARG00020010317 #17	GALNTL6 (ENSOARG00020010374) #21	ENSOARG00020010526	ENSOARG00020010640 #22	ENSOARG00020010802	ENSOARG00020010854 #22	MFAP3L (ENSOARG00020011097) #23	HPF1 (ENSOARG00020011167) #26	CLCN3 (ENSOARG00020011269) #27	NEK1 (ENSOARG00020011937) #28	SH3RF1 (ENSOARG00020013929) #29	CBR4 (ENSOARG00020014077) #30	PALLD (ENSOARG00020014210) #32	ANXA10 (ENSOARG00020015044) #35	MFSD14B (ENSOARG00020015113)	ENSOARG00020015375	ENSOARG00020015399	ENSOARG00020015411	LGSN (ENSOARG00020015419)
Siberian musk deer	MODERN SPECIES	1157																ENSMMSG00000021304 #22	ENSMMSG00000021362 #22	MFAP3L (ENSMMSG00000021432) #23	HPF1 (ENSMMSG00000021456) #26	CLCN3 (ENSMMSG00000021501) #27	NEK1 (ENSMMSG00000021655) #28	SH3RF1 (ENSMMSG00000021895) #29	CBR4 (ENSMMSG00000021914) #30	PALLD (ENSMMSG00000021975) #32	ANXA10 (ENSMMSG00000022200) #35	MFSD14B (ENSMMSG00000022231)	ENSMMSG00000022271	ENSMMSG00000022289	ENSMMSG00000022303	ENSMMSG00000022312	ENSMMSG00000022322
Camelidae	ANCESTRAL SPECIES	47	ENSGT00400000024366	ENSGT00940000168825	ENSGT00390000001538	ENSGT00940000162672.i	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00740000117098	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT01000000217744	ENSGT00940000153441.a.a #32	ENSGT00940000160623 #35
Alpaca	MODERN SPECIES	3511																ENSVPAG00000002235 #22
Arabian camel	MODERN SPECIES	24	ENSCDRG00005011307	ENSCDRG00005011371	GLRA3 (ENSCDRG00005011644)	ENSCDRG00005011751	ENSCDRG00005011773 #7	CEP44 (ENSCDRG00005011812) #8	FBXO8 (ENSCDRG00005011875) #9	ENSCDRG00005011915 #13	SCRG1 (ENSCDRG00005011953) #15	SAP30 (ENSCDRG00005011999) #16	HMGB2 (ENSCDRG00005012061) #17	GALNT7 (ENSCDRG00005012127) #18	GALNTL6 (ENSCDRG00005012358) #21	ENSCDRG00005012415 #21	ENSCDRG00005012472	AADAT (ENSCDRG00005012493) #22	MFAP3L (ENSCDRG00005012627) #23	HPF1 (ENSCDRG00005012692) #26	CLCN3 (ENSCDRG00005012765) #27	NEK1 (ENSCDRG00005013105) #28	SH3RF1 (ENSCDRG00005013382) #29	CBR4 (ENSCDRG00005013423) #30	ENSCDRG00005013513	PALLD (ENSCDRG00005013593) #32	ANXA10 (ENSCDRG00005014222) #35	ENSCDRG00005014301	SPOCK3 (ENSCDRG00005014420) #36	ENSCDRG00005017520
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00400000024366	ENSGT00390000001538	ENSGT00390000008918.b	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Carnivora	ANCESTRAL SPECIES	5	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Caniformia	ANCESTRAL SPECIES	7	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.u.b #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012.c	ENSGT00940000156434	ENSGT00390000013749
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.u.b #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012.c	ENSGT00940000156434	ENSGT00390000013749
Ursidae	ANCESTRAL SPECIES	17	ENSGT00400000024366	ENSGT00390000001538	ENSGT00390000008918.b	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.u.b #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012.c	ENSGT00940000156434	ENSGT00390000013749
Ursus	ANCESTRAL SPECIES	242																ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.u.b #36	ENSGT00940000157225 #37
American black bear	MODERN SPECIES	4308																AADAT (ENSUAMG00000010219) #22	MFAP3L (ENSUAMG00000010214) #23
Polar bear	MODERN SPECIES	124																AADAT (ENSUMAG00000020416) #22	MFAP3L (ENSUMAG00000020413) #23	HPF1 (ENSUMAG00000020403) #26	CLCN3 (ENSUMAG00000020397) #27	ENSUMAG00000020375 #28	ENSUMAG00000020338 #28	SH3RF1 (ENSUMAG00000020329) #29	ENSUMAG00000020322 #30	PALLD (ENSUMAG00000020285) #32	DDX60 (ENSUMAG00000020219) #34	ANXA10 (ENSUMAG00000020169) #35	SPOCK3 (ENSUMAG00000020148) #36	TLL1 (ENSUMAG00000019868) #37
Giant Panda	MODERN SPECIES	15	DEFB135 (ENSAMEG00000006275)	ENSAMEG00000006278	ENSAMEG00000006279	ENSAMEG00000024764	ENSAMEG00000019429	ENSAMEG00000014123	HPGD (ENSAMEG00000014144) #7	CEP44 (ENSAMEG00000014171) #8	FBXO8 (ENSAMEG00000014187) #9	HAND2 (ENSAMEG00000014235) #13	SCRG1 (ENSAMEG00000014244) #15	SAP30 (ENSAMEG00000014246) #16	HMGB2 (ENSAMEG00000014262) #17	GALNT7 (ENSAMEG00000014267) #18	GALNTL6 (ENSAMEG00000024177) #21	AADAT (ENSAMEG00000000909) #22	MFAP3L (ENSAMEG00000000904) #23	HPF1 (ENSAMEG00000013232) #26	CLCN3 (ENSAMEG00000013246) #27	NEK1 (ENSAMEG00000013287) #28	ENSAMEG00000013347	SH3RF1 (ENSAMEG00000013355) #29	CBR4 (ENSAMEG00000013400) #30	PALLD (ENSAMEG00000013412) #32	DDX60 (ENSAMEG00000013429) #34	ANXA10 (ENSAMEG00000013452) #35	ENSAMEG00000026069	SPOCK3 (ENSAMEG00000005030) #36	ENSAMEG00000005035	TLL1 (ENSAMEG00000005039) #37	CPE (ENSAMEG00000005123)
Mustelinae	ANCESTRAL SPECIES																	ENSGT00390000004594 #22
Ferret	MODERN SPECIES	256															ENSMPUG00000003166	AADAT (ENSMPUG00000003172) #22	ENSMPUG00000003181	PPP2R2A (ENSMPUG00000003186)	EBF2 (ENSMPUG00000003195)	ENSMPUG00000003203	CDCA2 (ENSMPUG00000003208)	KCTD9 (ENSMPUG00000003214)	GNRH1 (ENSMPUG00000003219)	DOCK5 (ENSMPUG00000003228)	NEFL (ENSMPUG00000003244)	ENSMPUG00000003249	ADAM7 (ENSMPUG00000003252)	ENSMPUG00000018762	ADAMDEC1 (ENSMPUG00000003330)	ADAM28 (ENSMPUG00000003381)	STC1 (ENSMPUG00000003399)
American mink	MODERN SPECIES	664																AADAT (ENSNVIG00000013704) #22
Canidae	ANCESTRAL SPECIES	31	ENSGT00390000001862	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00390000012929	ENSGT00940000153231.A	ENSGT00940000162860	ENSGT00900000143113	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b.f	ENSGT00940000160555
Canis_lupus	ANCESTRAL SPECIES	18	ENSGT00390000001862	ENSGT00530000064429	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000153201.j.m.a.e.b.a.b	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00390000018086.z.j.b.a.b.a.b	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00390000012929	ENSGT00940000153231.A	ENSGT00940000162860	ENSGT00900000143113	ENSGT00940000159259.b	ENSGT00940000157559	ENSGT00530000063927.a.b.f
Dingo	MODERN SPECIES	304	GLRA3 (ENSCAFG00020011792)	HPGD (ENSCAFG00020011781) #7	CEP44 (ENSCAFG00020011776) #8	FBXO8 (ENSCAFG00020011774) #9	HAND2 (ENSCAFG00020011768) #13	SCRG1 (ENSCAFG00020011766) #15	SAP30 (ENSCAFG00020011765) #16	HMGB2 (ENSCAFG00020011761) #17	GALNT7 (ENSCAFG00020011759) #18	ENSCAFG00020011757	GALNTL6 (ENSCAFG00020011754) #21	ENSCAFG00020011750 #21	ENSCAFG00020011745	ENSCAFG00020011729	ENSCAFG00020011716	AADAT (ENSCAFG00020011708) #22	MFAP3L (ENSCAFG00020011703) #23	HPF1 (ENSCAFG00020011689) #26	CLCN3 (ENSCAFG00020006092) #27	NEK1 (ENSCAFG00020003641) #28	SH3RF1 (ENSCAFG00020003443) #29	ENSCAFG00020003428	ENSCAFG00020003425	ENSCAFG00020003414	CBR4 (ENSCAFG00020003413) #30	PALLD (ENSCAFG00020003032) #32	CCDC115 (ENSCAFG00020002989)	ENSCAFG00020002987	ENSCAFG00020002951	ENSCAFG00020002944	ATP12A (ENSCAFG00020002929)
Dog	MODERN SPECIES	17	ADAM29 (ENSCAFG00845018395)	GLRA3 (ENSCAFG00845018265)	HPGD (ENSCAFG00845018083) #7	CEP44 (ENSCAFG00845017832) #8	FBXO8 (ENSCAFG00845017782) #9	HAND2 (ENSCAFG00845017182) #13	SCRG1 (ENSCAFG00845017141) #15	SAP30 (ENSCAFG00845017098) #16	HMGB2 (ENSCAFG00845017050) #17	ENSCAFG00845016982 #18	ENSCAFG00845016838	ENSCAFG00845016810	GALNTL6 (ENSCAFG00845016564) #21	ENSCAFG00845028629	ENSCAFG00845028616	AADAT (ENSCAFG00845028500) #22	MFAP3L (ENSCAFG00845028385) #23	HPF1 (ENSCAFG00845028301) #26	CLCN3 (ENSCAFG00845028065) #27	NEK1 (ENSCAFG00845026873) #28	SH3RF1 (ENSCAFG00845026368) #29	ENSCAFG00845026241	ENSCAFG00845026158	ENSCAFG00845026075	CBR4 (ENSCAFG00845026026) #30	PALLD (ENSCAFG00845025456) #32	CCDC115 (ENSCAFG00845025350)	ENSCAFG00845025275	ENSCAFG00845025152	ENSCAFG00845025102	ENSCAFG00845024838
Red fox	MODERN SPECIES	136				ADAM29 (ENSVVUG00000016674)	GLRA3 (ENSVVUG00000016683)	HPGD (ENSVVUG00000016778) #7	CEP44 (ENSVVUG00000016785) #8	FBXO8 (ENSVVUG00000016793) #9	HAND2 (ENSVVUG00000016802) #13	SCRG1 (ENSVVUG00000016808) #15	SAP30 (ENSVVUG00000016813) #16	HMGB2 (ENSVVUG00000016822) #17	GALNT7 (ENSVVUG00000016828) #18	GALNTL6 (ENSVVUG00000016851) #21	ENSVVUG00000016858 #21	AADAT (ENSVVUG00000016907) #22	MFAP3L (ENSVVUG00000016925) #23	HPF1 (ENSVVUG00000016932) #26	CLCN3 (ENSVVUG00000016944) #27	NEK1 (ENSVVUG00000016978) #28	ENSVVUG00000017110	SH3RF1 (ENSVVUG00000017114) #29
Felidae	ANCESTRAL SPECIES	4	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.y #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Panthera	ANCESTRAL SPECIES	5	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.y #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466.y #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00940000161896.a.b
lion	MODERN SPECIES	4	ENSPLOG00000000742	DEFB134 (ENSPLOG00000000754)	ENSPLOG00000000765	ENSPLOG00000000782	ADAM29 (ENSPLOG00000000794)	GLRA3 (ENSPLOG00000000823)	HPGD (ENSPLOG00000000888) #7	CEP44 (ENSPLOG00000000965) #8	FBXO8 (ENSPLOG00000000995) #9	HAND2 (ENSPLOG00000001020) #13	SAP30 (ENSPLOG00000001044) #16	SCRG1 (ENSPLOG00000001062) #15	ENSPLOG00000001073 #17	GALNT7 (ENSPLOG00000001095) #18	GALNTL6 (ENSPLOG00000001123) #21	AADAT (ENSPLOG00000001178) #22	MFAP3L (ENSPLOG00000001200) #23	HPF1 (ENSPLOG00000001222) #26	CLCN3 (ENSPLOG00000001246) #27	NEK1 (ENSPLOG00000001370) #28	SH3RF1 (ENSPLOG00000001582) #29	CBR4 (ENSPLOG00000001598) #30	PALLD (ENSPLOG00000001684) #32	DDX60 (ENSPLOG00000001802) #34	ANXA10 (ENSPLOG00000001849) #35	SPOCK3 (ENSPLOG00000002005) #36	TLL1 (ENSPLOG00000002308) #37	CPE (ENSPLOG00000002372)	MSMO1 (ENSPLOG00000002397)	KLHL2 (ENSPLOG00000002511)	ENSPLOG00000002581
leopard	MODERN SPECIES	6	ENSPPRG00000000391	ADAM29 (ENSPPRG00000021979)	GLRA3 (ENSPPRG00000023183)	HPGD (ENSPPRG00000023873) #7	CEP44 (ENSPPRG00000024573) #8	FBXO8 (ENSPPRG00000024959) #9	ENSPPRG00000019577	ENSPPRG00000018188 #13	ENSPPRG00000016992 #13	SCRG1 (ENSPPRG00000015364) #15	SAP30 (ENSPPRG00000015177) #16	ENSPPRG00000015128 #17	GALNT7 (ENSPPRG00000014261) #18	GALNTL6 (ENSPPRG00000012170) #21	ENSPPRG00000010643	AADAT (ENSPPRG00000010311) #22	MFAP3L (ENSPPRG00000009549) #23	HPF1 (ENSPPRG00000008880) #26	CLCN3 (ENSPPRG00000007291) #27	NEK1 (ENSPPRG00000004431) #28	ENSPPRG00000015165	SH3RF1 (ENSPPRG00000014500) #29	CBR4 (ENSPPRG00000013827) #30	PALLD (ENSPPRG00000013273) #32	DDX60 (ENSPPRG00000009286) #34	ANXA10 (ENSPPRG00000006171) #35	ENSPPRG00000005082	ENSPPRG00000003940	ENSPPRG00000003228	SPOCK3 (ENSPPRG00000002753) #36	TLL1 (ENSPPRG00000020476) #37
Tiger	MODERN SPECIES	550	CTSB (ENSPTIG00000016561)	DEFB136 (ENSPTIG00000017948)	DEFB135 (ENSPTIG00000017997)	DEFB134 (ENSPTIG00000018472)	ENSPTIG00000000456	ADAM29 (ENSPTIG00000000511)	GLRA3 (ENSPTIG00000020336)	HPGD (ENSPTIG00000001750) #7	CEP44 (ENSPTIG00000005771) #8	FBXO8 (ENSPTIG00000011157) #9	SCRG1 (ENSPTIG00000013023) #15	SAP30 (ENSPTIG00000013339) #16	ENSPTIG00000013934 #17	GALNT7 (ENSPTIG00000015312) #18	GALNTL6 (ENSPTIG00000017382) #21	AADAT (ENSPTIG00000020364) #22	MFAP3L (ENSPTIG00000021716) #23	HPF1 (ENSPTIG00000021863) #26	CLCN3 (ENSPTIG00000005464) #27	NEK1 (ENSPTIG00000011841) #28	SH3RF1 (ENSPTIG00000008382) #29	CBR4 (ENSPTIG00000017530) #30	PALLD (ENSPTIG00000018630) #32	DDX60 (ENSPTIG00000022042) #34	ANXA10 (ENSPTIG00000003362) #35	SPOCK3 (ENSPTIG00000007216) #36
Cat	MODERN SPECIES	235	DEFB134 (ENSFCAG00000044128)	ENSFCAG00000034552	ENSFCAG00000052595	ENSFCAG00000053671	ADAM29 (ENSFCAG00000043968)	GLRA3 (ENSFCAG00000028576)	HPGD (ENSFCAG00000004720) #7	CEP44 (ENSFCAG00000023953) #8	FBXO8 (ENSFCAG00000015055) #9	HAND2 (ENSFCAG00000043727) #13	SCRG1 (ENSFCAG00000007702) #15	SAP30 (ENSFCAG00000025710) #16	HMGB2 (ENSFCAG00000004218) #17	GALNT7 (ENSFCAG00000008106) #18	GALNTL6 (ENSFCAG00000008104) #21	AADAT (ENSFCAG00000012591) #22	MFAP3L (ENSFCAG00000012588) #23	HPF1 (ENSFCAG00000023188) #26	CLCN3 (ENSFCAG00000000778) #27	NEK1 (ENSFCAG00000007579) #28	ENSFCAG00000026999	SH3RF1 (ENSFCAG00000005799) #29	CBR4 (ENSFCAG00000030280) #30	PALLD (ENSFCAG00000027262) #32	DDX60 (ENSFCAG00000010766) #34	ANXA10 (ENSFCAG00000005123) #35	ENSFCAG00000035033	SPOCK3 (ENSFCAG00000031122) #36	TLL1 (ENSFCAG00000013188) #37	ENSFCAG00000053542	CPE (ENSFCAG00000012182)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Equus	ANCESTRAL SPECIES	24	ENSGT00390000001538	ENSGT00390000008918.b	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT01090000263428	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000166009	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Donkey	MODERN SPECIES	22	ENSEASG00005028451	ENSEASG00005016441	ENSEASG00005016445	ENSEASG00005016450	GLRA3 (ENSEASG00005016461)	HPGD (ENSEASG00005016490) #7	CEP44 (ENSEASG00005020934) #8	FBXO8 (ENSEASG00005020940) #9	HAND2 (ENSEASG00005020948) #13	SCRG1 (ENSEASG00005036844) #15	ENSEASG00005034123	SAP30 (ENSEASG00005020956) #16	HMGB2 (ENSEASG00005032823) #17	GALNT7 (ENSEASG00005020974) #18	GALNTL6 (ENSEASG00005020980) #21	AADAT (ENSEASG00005021037) #22	MFAP3L (ENSEASG00005036117) #23	HPF1 (ENSEASG00005021112) #26	CLCN3 (ENSEASG00005021120) #27	NEK1 (ENSEASG00005021225) #28	SH3RF1 (ENSEASG00005021491) #29	ENSEASG00005038062	CBR4 (ENSEASG00005036781) #30	PALLD (ENSEASG00005021504) #32	ENSEASG00005021516	DDX60L (ENSEASG00005021597) #33	DDX60 (ENSEASG00005021849) #34	ENSEASG00005021885 #34	ANXA10 (ENSEASG00005021891) #35	SPOCK3 (ENSEASG00005021900) #36	TLL1 (ENSEASG00005021920) #37
Horse	MODERN SPECIES	11	GLRA3 (ENSECAG00000023999)	HPGD (ENSECAG00000005379) #7	CEP44 (ENSECAG00000005916) #8	FBXO8 (ENSECAG00000007723) #9	HAND2 (ENSECAG00000060197) #13	SCRG1 (ENSECAG00000054139) #15	SAP30 (ENSECAG00000009676) #16	ENSECAG00000057681	HMGB2 (ENSECAG00000010132) #17	GALNT7 (ENSECAG00000010243) #18	GALNTL6 (ENSECAG00000011615) #21	ENSECAG00000045153	ENSECAG00000043898	ENSECAG00000046681	ENSECAG00000052726	AADAT (ENSECAG00000013400) #22	MFAP3L (ENSECAG00000002425) #23	HPF1 (ENSECAG00000013735) #26	CLCN3 (ENSECAG00000014556) #27	NEK1 (ENSECAG00000017058) #28	SH3RF1 (ENSECAG00000021240) #29	ENSECAG00000034250	CBR4 (ENSECAG00000022089) #30	PALLD (ENSECAG00000023122) #32	ENSECAG00000036595	DDX60L (ENSECAG00000024062) #33	DDX60 (ENSECAG00000053648) #34	ENSECAG00000032492 #34	ENSECAG00000048862	ANXA10 (ENSECAG00000024897) #35	ENSECAG00000032479
Chiroptera	ANCESTRAL SPECIES	61	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Megabat	MODERN SPECIES	795																AADAT (ENSPVAG00000013211) #22	MFAP3L (ENSPVAG00000013210) #23	HPF1 (ENSPVAG00000013209) #26	CLCN3 (ENSPVAG00000013208) #27	NEK1 (ENSPVAG00000013204) #28
Microchiroptera	ANCESTRAL SPECIES	52	ENSGT00530000064429	ENSGT00400000024366	ENSGT00390000001538	ENSGT00940000162672	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36
Microbat	MODERN SPECIES	275																ENSMLUG00000007899 #22
Greater horseshoe bat	MODERN SPECIES	9	ENSRFEG00010017285	ENSRFEG00010005316	ENSRFEG00010005327	ENSRFEG00010005345	ADAM29 (ENSRFEG00010005384)	GLRA3 (ENSRFEG00010005453)	HPGD (ENSRFEG00010005547) #7	CEP44 (ENSRFEG00010005621) #8	FBXO8 (ENSRFEG00010005707) #9	HAND2 (ENSRFEG00010005773) #13	SAP30 (ENSRFEG00010005802) #16	SCRG1 (ENSRFEG00010005843) #15	ENSRFEG00010005858 #17	GALNT7 (ENSRFEG00010005905) #18	GALNTL6 (ENSRFEG00010005964) #21	AADAT (ENSRFEG00010006065) #22	MFAP3L (ENSRFEG00010006163) #23	HPF1 (ENSRFEG00010006209) #26	CLCN3 (ENSRFEG00010006286) #27	NEK1 (ENSRFEG00010006499) #28	SH3RF1 (ENSRFEG00010006828) #29	CBR4 (ENSRFEG00010006884) #30	PALLD (ENSRFEG00010006988) #32	DDX60 (ENSRFEG00010007842) #34	ANXA10 (ENSRFEG00010009234) #35	ENSRFEG00010009334	SPOCK3 (ENSRFEG00010009354) #36	ENSRFEG00010009565	ENSRFEG00010009651	OR2Z1 (ENSRFEG00010009691)	ENSRFEG00010009718
Atlantogenata	ANCESTRAL SPECIES	84	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188.d #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Afrotheria	ANCESTRAL SPECIES	92	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188.d #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Afrotheria_a	ANCESTRAL SPECIES	95	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000163394	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000164328 #33	ENSGT00940000157188.d #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Elephant	MODERN SPECIES	355	WDR17 (ENSLAFG00000014654)	GPM6A (ENSLAFG00000009135)	ENSLAFG00000030784	ADAM29 (ENSLAFG00000026574)	GLRA3 (ENSLAFG00000009978)	HPGD (ENSLAFG00000001508) #7	CEP44 (ENSLAFG00000016042) #8	FBXO8 (ENSLAFG00000022683) #9	HAND2 (ENSLAFG00000029843) #13	SCRG1 (ENSLAFG00000002775) #15	SAP30 (ENSLAFG00000002772) #16	ENSLAFG00000010417 #17	GALNT7 (ENSLAFG00000010411) #18	GALNTL6 (ENSLAFG00000012366) #21	ENSLAFG00000031767 #21	AADAT (ENSLAFG00000009712) #22	MFAP3L (ENSLAFG00000017991) #23	HPF1 (ENSLAFG00000020816) #26	CLCN3 (ENSLAFG00000001385) #27	ENSLAFG00000032725 #28	ENSLAFG00000013526 #28	SH3RF1 (ENSLAFG00000015901) #29	CBR4 (ENSLAFG00000016271) #30	ENSLAFG00000016121 #32	ENSLAFG00000031839 #32	ENSLAFG00000026072 #33	ENSLAFG00000003113 #34	ENSLAFG00000014392 #34	ENSLAFG00000030244 #34	ENSLAFG00000032464 #34	ANXA10 (ENSLAFG00000003884) #35
Hyrax	MODERN SPECIES	885																AADAT (ENSPCAG00000009305) #22
Tenrec	MODERN SPECIES	8355																AADAT (ENSETEG00000009252) #22	MFAP3L (ENSETEG00000009250) #23
Xenarthra	ANCESTRAL SPECIES	583																ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000153441.a.a #32	ENSGT00940000157188.d #34
Sloth	MODERN SPECIES	965																AADAT (ENSCHOG00000010811) #22
Armadillo	MODERN SPECIES	3388																AADAT (ENSDNOG00000049123) #22	MFAP3L (ENSDNOG00000037042) #23	ENSDNOG00000019532	HPF1 (ENSDNOG00000037186) #26	CLCN3 (ENSDNOG00000000268) #27	NEK1 (ENSDNOG00000006007) #28	SH3RF1 (ENSDNOG00000014962) #29	ENSDNOG00000040658	ENSDNOG00000008421 #32	ENSDNOG00000043985 #32	ENSDNOG00000033932 #32	DDX60 (ENSDNOG00000008454) #34
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298.a	ENSGT00940000155038 #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.l #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Opossum	MODERN SPECIES	336												ENSMODG00000050083	ENSMODG00000022818	ENSMODG00000027883	ENSMODG00000022821	ENSMODG00000003127 #22
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298.a	ENSGT00940000155038 #21	ENSGT01020000234456	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828.l #36	ENSGT00940000157225 #37	ENSGT00940000160098	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Diprotodontia	ANCESTRAL SPECIES	43	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000168298.a	ENSGT00940000155038 #21	ENSGT01020000234456	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000168298.a	ENSGT00440000038032.ib	ENSGT00940000155038 #21	ENSGT01020000234456	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32
Common wonbat	MODERN SPECIES	1057	ENSVURG00010008026	GLRA3 (ENSVURG00010008080)	HPGD (ENSVURG00010008239) #7	CEP44 (ENSVURG00010008280) #8	FBXO8 (ENSVURG00010008302) #9	HAND2 (ENSVURG00010008339) #13	SCRG1 (ENSVURG00010008367) #15	SAP30 (ENSVURG00010008374) #16	HMGB2 (ENSVURG00010008382) #17	ENSVURG00010008399	ENSVURG00010008409	ENSVURG00010008416	ENSVURG00010008484 #21	ENSVURG00010008502 #21	ENSVURG00010008547	AADAT (ENSVURG00010008564) #22	MFAP3L (ENSVURG00010008575) #23	HPF1 (ENSVURG00010008591) #26	CLCN3 (ENSVURG00010008612) #27	NEK1 (ENSVURG00010008719) #28	ENSVURG00010008909	SH3RF1 (ENSVURG00010008928) #29	ENSVURG00010008941	CBR4 (ENSVURG00010008962) #30	ENSVURG00010009006 #32	ENSVURG00010009031 #32
koala	MODERN SPECIES	68	CEP44 (ENSPCIG00000022019) #8	FBXO8 (ENSPCIG00000022026) #9	HAND2 (ENSPCIG00000007105) #13	SCRG1 (ENSPCIG00000008569) #15	SAP30 (ENSPCIG00000031794) #16	HMGB2 (ENSPCIG00000007107) #17	ENSPCIG00000007109	ENSPCIG00000007112	ENSPCIG00000031718 #21	ENSPCIG00000007117 #21	ENSPCIG00000032836	ENSPCIG00000029808	ENSPCIG00000010845	ENSPCIG00000010846	ENSPCIG00000035559	AADAT (ENSPCIG00000028046) #22	MFAP3L (ENSPCIG00000028044) #23	HPF1 (ENSPCIG00000024011) #26	CLCN3 (ENSPCIG00000024013) #27	NEK1 (ENSPCIG00000024020) #28	SH3RF1 (ENSPCIG00000012288) #29	CBR4 (ENSPCIG00000004314) #30	ENSPCIG00000023153	ENSPCIG00000023154 #32	ENSPCIG00000023297 #32	ENSPCIG00000034438
Wallaby	MODERN SPECIES	1855																AADAT (ENSMEUG00000014800) #22
Tasmanian devil	MODERN SPECIES	5	GPM6A (ENSSHAG00000016711)	GLRA3 (ENSSHAG00000028551)	HPGD (ENSSHAG00000008831) #7	ENSSHAG00000010919 #8	FBXO8 (ENSSHAG00000011317) #9	HAND2 (ENSSHAG00000011188) #13	SCRG1 (ENSSHAG00000012103) #15	SAP30 (ENSSHAG00000024249) #16	HMGB2 (ENSSHAG00000012461) #17	ENSSHAG00000012501 #18	ENSSHAG00000014155	ENSSHAG00000014428 #21	ENSSHAG00000031599	ENSSHAG00000027852	ENSSHAG00000003993	ENSSHAG00000008847 #22	MFAP3L (ENSSHAG00000026889) #23	HPF1 (ENSSHAG00000011452) #26	CLCN3 (ENSSHAG00000011599) #27	NEK1 (ENSSHAG00000012339) #28	SH3RF1 (ENSSHAG00000013252) #29	CBR4 (ENSSHAG00000030245) #30	PALLD (ENSSHAG00000015991) #32	DDX60 (ENSSHAG00000016219) #34	ENSSHAG00000025468 #34	ANXA10 (ENSSHAG00000016767) #35	SPOCK3 (ENSSHAG00000026209) #36	TLL1 (ENSSHAG00000008850) #37	ENSSHAG00000029092	ENSSHAG00000011364	CPE (ENSSHAG00000020757)
Platypus	MODERN SPECIES	3	ENSOANG00000045846	WDR17 (ENSOANG00000003590)	GPM6A (ENSOANG00000036971)	GLRA3 (ENSOANG00000005603)	HPGD (ENSOANG00000005602) #7	ENSOANG00000005601 #8	FBXO8 (ENSOANG00000005600) #9	HAND2 (ENSOANG00000043556) #13	SCRG1 (ENSOANG00000011492) #15	SAP30 (ENSOANG00000011493) #16	ENSOANG00000044550 #17	GALNT7 (ENSOANG00000011495) #18	ENSOANG00000003214 #21	ENSOANG00000012484 #21	ENSOANG00000029673	AADAT (ENSOANG00000007439) #22	MFAP3L (ENSOANG00000007440) #23	HPF1 (ENSOANG00000007441) #26	CLCN3 (ENSOANG00000007442) #27	NEK1 (ENSOANG00000007443) #28	SH3RF1 (ENSOANG00000007444) #29	ENSOANG00000007445 #30	PALLD (ENSOANG00000007453) #32	DDX60 (ENSOANG00000007454) #34	ENSOANG00000028702 #34	ENSOANG00000039215	SPOCK3 (ENSOANG00000014484) #36	TLL1 (ENSOANG00000014482) #37	CPE (ENSOANG00000014480)	MSMO1 (ENSOANG00000014479)	KLHL2 (ENSOANG00000014478)
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	6	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Laterata	ANCESTRAL SPECIES	9	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873.a #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225.t #37	ENSGT00940000157158.d
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	17	ENSPMRG00000010383 #8	ENSPMRG00000010390 #8	FBXO8 (ENSPMRG00000010399) #9	ENSPMRG00000010404	ENSPMRG00000010414	HAND2 (ENSPMRG00000010419) #13	SCRG1 (ENSPMRG00000010423) #15	SAP30 (ENSPMRG00000010430) #16	ENSPMRG00000010436 #17	GALNT7 (ENSPMRG00000010446) #18	GALNTL6 (ENSPMRG00000010453) #21	ENSPMRG00000010460	ENSPMRG00000010466	ENSPMRG00000010472	ENSPMRG00000010475	ENSPMRG00000010481 #22	ENSPMRG00000010491 #22	ENSPMRG00000010503	HPF1 (ENSPMRG00000010507) #26	CLCN3 (ENSPMRG00000010515) #27	NEK1 (ENSPMRG00000010552) #28	SH3RF1 (ENSPMRG00000010636) #29	ENSPMRG00000010649	CBR4 (ENSPMRG00000010655) #30	PALLD (ENSPMRG00000010672) #32	ENSPMRG00000010679	DDX60 (ENSPMRG00000010909) #34	ANXA10 (ENSPMRG00000011860) #35	ENSPMRG00000011871	SPOCK3 (ENSPMRG00000011877) #36	ENSPMRG00000011897
Common wall lizard	MODERN SPECIES	200																ENSPMRG00000022337 #22	ENSPMRG00000022340
Argentine black and white tegu	MODERN SPECIES	26	WDR17 (ENSSMRG00000009452)	GPM6A (ENSSMRG00000009451)	ENSSMRG00000009408	GLRA3 (ENSSMRG00000009406)	HPGD (ENSSMRG00000009397) #7	CEP44 (ENSSMRG00000009396) #8	FBXO8 (ENSSMRG00000009395) #9	HAND2 (ENSSMRG00000009378) #13	SCRG1 (ENSSMRG00000009363) #15	SAP30 (ENSSMRG00000009362) #16	HMGB2 (ENSSMRG00000009361) #17	GALNT7 (ENSSMRG00000009360) #18	ENSSMRG00000009353 #21	ENSSMRG00000009344 #21	ENSSMRG00000009343 #21	ENSSMRG00000009328 #22	ENSSMRG00000009310 #22	MFAP3L (ENSSMRG00000009309) #23	HPF1 (ENSSMRG00000009308) #26	CLCN3 (ENSSMRG00000009307) #27	NEK1 (ENSSMRG00000004496) #28	SH3RF1 (ENSSMRG00000004477) #29	CBR4 (ENSSMRG00000004473) #30	PALLD (ENSSMRG00000004456) #32	ENSSMRG00000002979 #34	ENSSMRG00000002951 #34	ENSSMRG00000002908	ANXA10 (ENSSMRG00000002887) #35	SPOCK3 (ENSSMRG00000002829) #36	ENSSMRG00000002782 #37	CPE (ENSSMRG00000002666)
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000167073	ENSGT00940000160623 #35
Elapidae	ANCESTRAL SPECIES	11	ENSGT00940000153230.A	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000006633.b #16	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT01030000234566.e.b.a.a	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000006633.b #16	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000154267.A	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d.a	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000006633.b #16	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00940000153432.A.a.f	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000165556	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Eastern brown snake	MODERN SPECIES	12	ASB5 (ENSPTXG00000002674)	SPATA4 (ENSPTXG00000002678)	WDR17 (ENSPTXG00000002692)	ENSPTXG00000002766	ENSPTXG00000002769	GLRA3 (ENSPTXG00000002774)	HPGD (ENSPTXG00000002779) #7	CEP44 (ENSPTXG00000002780) #8	FBXO8 (ENSPTXG00000002781) #9	HAND2 (ENSPTXG00000002784) #13	ENSPTXG00000002786	SAP30 (ENSPTXG00000002789) #16	GALNT7 (ENSPTXG00000002791) #18	GALNTL6 (ENSPTXG00000002793) #21	ENSPTXG00000002794	AADAT (ENSPTXG00000002796) #22	MFAP3L (ENSPTXG00000002798) #23	HPF1 (ENSPTXG00000002799) #26	CLCN3 (ENSPTXG00000002803) #27	NEK1 (ENSPTXG00000002823) #28	SH3RF1 (ENSPTXG00000002949) #29	CBR4 (ENSPTXG00000002953) #30	ENSPTXG00000002958 #32	ENSPTXG00000002965 #32	ENSPTXG00000002969	ENSPTXG00000002971	LCORL (ENSPTXG00000002973)	ENSPTXG00000002978	MED28 (ENSPTXG00000002981)	LAP3 (ENSPTXG00000002984)	CLRN2 (ENSPTXG00000002986)
Mainland tiger snake	MODERN SPECIES	108											HAND2 (ENSNSUG00000011454) #13	SAP30 (ENSNSUG00000011453) #16	GALNT7 (ENSNSUG00000011317) #18	GALNTL6 (ENSNSUG00000011310) #21	ENSNSUG00000011309	AADAT (ENSNSUG00000011302) #22	MFAP3L (ENSNSUG00000011301) #23	ENSNSUG00000011300	HPF1 (ENSNSUG00000011298) #26	CLCN3 (ENSNSUG00000011052) #27	NEK1 (ENSNSUG00000011050) #28	SH3RF1 (ENSNSUG00000010950) #29	CBR4 (ENSNSUG00000010947) #30	PALLD (ENSNSUG00000010938) #32	ENSNSUG00000010937	ENSNSUG00000010935	ENSNSUG00000010934	ENSNSUG00000010933	MED28 (ENSNSUG00000010932)	LAP3 (ENSNSUG00000010931)	CLRN2 (ENSNSUG00000010930)
Blue-lipped sea krait	MODERN SPECIES	4333																AADAT (ENSLLTG00000016563) #22
Indian cobra	MODERN SPECIES	3	SPCS3 (ENSNNAG00000008000)	ASB5 (ENSNNAG00000008020)	SPATA4 (ENSNNAG00000008079)	WDR17 (ENSNNAG00000008274)	GPM6A (ENSNNAG00000010745)	GLRA3 (ENSNNAG00000010772)	HPGD (ENSNNAG00000010823) #7	CEP44 (ENSNNAG00000010850) #8	FBXO8 (ENSNNAG00000010885) #9	HAND2 (ENSNNAG00000010908) #13	ENSNNAG00000010919	SAP30 (ENSNNAG00000010956) #16	ENSNNAG00000010984 #18	ENSNNAG00000011003 #18	GALNTL6 (ENSNNAG00000011025) #21	AADAT (ENSNNAG00000011084) #22	MFAP3L (ENSNNAG00000011151) #23	HPF1 (ENSNNAG00000011169) #26	CLCN3 (ENSNNAG00000011220) #27	NEK1 (ENSNNAG00000011401) #28	SH3RF1 (ENSNNAG00000011951) #29	CBR4 (ENSNNAG00000012002) #30	PALLD (ENSNNAG00000012120) #32	ENSNNAG00000013522	ENSNNAG00000013685	NCAPG (ENSNNAG00000013717)	MED28 (ENSNNAG00000013760)	LAP3 (ENSNNAG00000013792)	CLRN2 (ENSNNAG00000013834)	QDPR (ENSNNAG00000013862)	LDB2 (ENSNNAG00000013877)
Lizard	MODERN SPECIES	830												ENSACAG00000005382 #21	ENSACAG00000005377 #21	ENSACAG00000041813 #21	ENSACAG00000042753	ENSACAG00000015588 #22	ENSACAG00000028358 #22	MFAP3L (ENSACAG00000015641) #23	HPF1 (ENSACAG00000015642) #26	CLCN3 (ENSACAG00000015662) #27	NEK1 (ENSACAG00000015828) #28	ENSACAG00000044070	SH3RF1 (ENSACAG00000015860) #29	ENSACAG00000039360	CBR4 (ENSACAG00000015942) #30	PALLD (ENSACAG00000015958) #32	ENSACAG00000037033	ENSACAG00000023096	DDX60 (ENSACAG00000016010) #34	ENSACAG00000038347	ANXA10 (ENSACAG00000036607) #35
tuatara	MODERN SPECIES	1920																ENSSPUG00000019266 #22	ENSSPUG00000019265 #22	HPF1 (ENSSPUG00000019263) #26	CLCN3 (ENSSPUG00000019262) #27	NEK1 (ENSSPUG00000019261) #28	SH3RF1 (ENSSPUG00000019260) #29	CBR4 (ENSSPUG00000019259) #30	PALLD (ENSSPUG00000019258) #32	DDX60 (ENSSPUG00000019257) #34	ANXA10 (ENSSPUG00000019256) #35
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Archosauria	ANCESTRAL SPECIES	1	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Aves	ANCESTRAL SPECIES	3	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000154136.k.b.b.a	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000166775	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Great tit	MODERN SPECIES	23	SPCS3 (ENSPMJG00000001714)	ASB5 (ENSPMJG00000001700)	VEGFC (ENSPMJG00000001686)	WDR17 (ENSPMJG00000001630)	GPM6A (ENSPMJG00000001622)	GLRA3 (ENSPMJG00000001600)	HPGD (ENSPMJG00000001582) #7	CEP44 (ENSPMJG00000001567) #8	FBXO8 (ENSPMJG00000001560) #9	HAND2 (ENSPMJG00000001532) #13	SCRG1 (ENSPMJG00000001521) #15	SAP30 (ENSPMJG00000001518) #16	HMGB2 (ENSPMJG00000001512) #17	GALNT7 (ENSPMJG00000001488) #18	GALNTL6 (ENSPMJG00000001432) #21	AADAT (ENSPMJG00000001338) #22	MFAP3L (ENSPMJG00000001336) #23	ENSPMJG00000001293	HPF1 (ENSPMJG00000001262) #26	CLCN3 (ENSPMJG00000001231) #27	NEK1 (ENSPMJG00000001000) #28	SH3RF1 (ENSPMJG00000000989) #29	CBR4 (ENSPMJG00000000979) #30	PALLD (ENSPMJG00000000929) #32	ENSPMJG00000000767	ANXA10 (ENSPMJG00000000377) #35	SPOCK3 (ENSPMJG00000000315) #36	TLL1 (ENSPMJG00000000139) #37	CPE (ENSPMJG00000000100)	MSMO1 (ENSPMJG00000000074)	KLHL2 (ENSPMJG00000011021)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000166775	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000166775	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000166775	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Common canary	MODERN SPECIES	2	VEGFC (ENSSCAG00000010159)	SPCS3 (ENSSCAG00000010167)	ASB5 (ENSSCAG00000010170)	WDR17 (ENSSCAG00000010175)	GPM6A (ENSSCAG00000010193)	GLRA3 (ENSSCAG00000010203)	HPGD (ENSSCAG00000010216) #7	CEP44 (ENSSCAG00000010219) #8	FBXO8 (ENSSCAG00000010222) #9	HAND2 (ENSSCAG00000010229) #13	SCRG1 (ENSSCAG00000010237) #15	SAP30 (ENSSCAG00000010239) #16	HMGB2 (ENSSCAG00000010243) #17	GALNT7 (ENSSCAG00000010245) #18	GALNTL6 (ENSSCAG00000010253) #21	AADAT (ENSSCAG00000010261) #22	MFAP3L (ENSSCAG00000010267) #23	HPF1 (ENSSCAG00000010268) #26	CLCN3 (ENSSCAG00000010271) #27	NEK1 (ENSSCAG00000010284) #28	SH3RF1 (ENSSCAG00000010309) #29	CBR4 (ENSSCAG00000010314) #30	PALLD (ENSSCAG00000010362) #32	ANXA10 (ENSSCAG00000010482) #35	SPOCK3 (ENSSCAG00000010508) #36	ENSSCAG00000010513	TLL1 (ENSSCAG00000010520) #37	CPE (ENSSCAG00000010526)	MSMO1 (ENSSCAG00000010529)	KLHL2 (ENSSCAG00000010531)	TMEM192 (ENSSCAG00000010536)
Zebra finch	MODERN SPECIES	25	SPCS3 (ENSTGUG00000006441)	ASB5 (ENSTGUG00000006421)	WDR17 (ENSTGUG00000006388)	GPM6A (ENSTGUG00000006358)	GLRA3 (ENSTGUG00000006325)	HPGD (ENSTGUG00000006311) #7	CEP44 (ENSTGUG00000006297) #8	FBXO8 (ENSTGUG00000006285) #9	ENSTGUG00000027176	HAND2 (ENSTGUG00000006281) #13	SCRG1 (ENSTGUG00000006280) #15	SAP30 (ENSTGUG00000006275) #16	HMGB2 (ENSTGUG00000006267) #17	GALNT7 (ENSTGUG00000006243) #18	GALNTL6 (ENSTGUG00000006232) #21	AADAT (ENSTGUG00000006219) #22	MFAP3L (ENSTGUG00000027066) #23	HPF1 (ENSTGUG00000006209) #26	CLCN3 (ENSTGUG00000006161) #27	NEK1 (ENSTGUG00000006124) #28	SH3RF1 (ENSTGUG00000006100) #29	CBR4 (ENSTGUG00000025799) #30	PALLD (ENSTGUG00000006061) #32	ENSTGUG00000027586	ANXA10 (ENSTGUG00000006030) #35	SPOCK3 (ENSTGUG00000006005) #36	TLL1 (ENSTGUG00000005951) #37	CPE (ENSTGUG00000005938)	MSMO1 (ENSTGUG00000005930)	KLHL2 (ENSTGUG00000005854)	TMEM192 (ENSTGUG00000005843)
Medium ground finch	MODERN SPECIES		VEGFC (ENSGFOG00000010919)	SPCS3 (ENSGFOG00000010925)	ASB5 (ENSGFOG00000010931)	WDR17 (ENSGFOG00000010966)	GPM6A (ENSGFOG00000011465)	GLRA3 (ENSGFOG00000011470)	HPGD (ENSGFOG00000011504) #7	CEP44 (ENSGFOG00000011514) #8	FBXO8 (ENSGFOG00000011522) #9	HAND2 (ENSGFOG00000000006) #13	SCRG1 (ENSGFOG00000000150) #15	SAP30 (ENSGFOG00000000154) #16	HMGB2 (ENSGFOG00000000158) #17	GALNT7 (ENSGFOG00000000167) #18	GALNTL6 (ENSGFOG00000000182) #21	AADAT (ENSGFOG00000000202) #22	MFAP3L (ENSGFOG00000000209) #23	HPF1 (ENSGFOG00000000212) #26	CLCN3 (ENSGFOG00000000217) #27	NEK1 (ENSGFOG00000000236) #28	SH3RF1 (ENSGFOG00000000301) #29	CBR4 (ENSGFOG00000000307) #30	PALLD (ENSGFOG00000000415) #32	ANXA10 (ENSGFOG00000001171) #35	SPOCK3 (ENSGFOG00000001186) #36	TLL1 (ENSGFOG00000001197) #37	CPE (ENSGFOG00000001212)	MSMO1 (ENSGFOG00000001221)	KLHL2 (ENSGFOG00000001230)	TMEM192 (ENSGFOG00000001258)	MARCHF1 (ENSGFOG00000001285)
Flycatcher	MODERN SPECIES	22	VEGFC (ENSFALG00000011590)	SPCS3 (ENSFALG00000024232)	ASB5 (ENSFALG00000011570)	WDR17 (ENSFALG00000011543)	GPM6A (ENSFALG00000025678)	GLRA3 (ENSFALG00000011516)	HPGD (ENSFALG00000025221) #7	CEP44 (ENSFALG00000011499) #8	FBXO8 (ENSFALG00000024067) #9	HAND2 (ENSFALG00000011490) #13	SCRG1 (ENSFALG00000011488) #15	SAP30 (ENSFALG00000011481) #16	HMGB2 (ENSFALG00000011474) #17	ENSFALG00000011458	GALNTL6 (ENSFALG00000011441) #21	AADAT (ENSFALG00000011425) #22	MFAP3L (ENSFALG00000026913) #23	HPF1 (ENSFALG00000011413) #26	CLCN3 (ENSFALG00000011405) #27	NEK1 (ENSFALG00000011390) #28	SH3RF1 (ENSFALG00000011380) #29	CBR4 (ENSFALG00000025399) #30	PALLD (ENSFALG00000025066) #32	ANXA10 (ENSFALG00000011340) #35	SPOCK3 (ENSFALG00000011321) #36	TLL1 (ENSFALG00000011281) #37	CPE (ENSFALG00000011233)	MSMO1 (ENSFALG00000011210)	KLHL2 (ENSFALG00000011199)	TMEM192 (ENSFALG00000011185)	ENSFALG00000011178
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000156167.b	ENSGT00390000009223	ENSGT00940000159851	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Golden eagle	MODERN SPECIES		VEGFC (ENSACCG00020010512)	SPCS3 (ENSACCG00020010530)	ASB5 (ENSACCG00020010555)	WDR17 (ENSACCG00020010660)	GPM6A (ENSACCG00020010783)	GLRA3 (ENSACCG00020010806)	HPGD (ENSACCG00020010819) #7	CEP44 (ENSACCG00020010838) #8	FBXO8 (ENSACCG00020010854) #9	HAND2 (ENSACCG00020010872) #13	SCRG1 (ENSACCG00020010883) #15	SAP30 (ENSACCG00020010894) #16	HMGB2 (ENSACCG00020010908) #17	GALNT7 (ENSACCG00020010938) #18	GALNTL6 (ENSACCG00020010971) #21	AADAT (ENSACCG00020000281) #22	MFAP3L (ENSACCG00020000283) #23	HPF1 (ENSACCG00020000284) #26	CLCN3 (ENSACCG00020000290) #27	NEK1 (ENSACCG00020000402) #28	SH3RF1 (ENSACCG00020000503) #29	CBR4 (ENSACCG00020000523) #30	PALLD (ENSACCG00020000620) #32	DDX60 (ENSACCG00020001079) #34	ENSACCG00020001352	ANXA10 (ENSACCG00020001373) #35	SPOCK3 (ENSACCG00020001409) #36	TLL1 (ENSACCG00020001700) #37	CPE (ENSACCG00020002082)	MSMO1 (ENSACCG00020002096)	KLHL2 (ENSACCG00020002135)
Kakapo	MODERN SPECIES	24	SPCS3 (ENSSHBG00005013467)	ASB5 (ENSSHBG00005013483)	ENSSHBG00005013504	ENSSHBG00005013523	GPM6A (ENSSHBG00005013531)	GLRA3 (ENSSHBG00005013547)	HPGD (ENSSHBG00005013562) #7	CEP44 (ENSSHBG00005013578) #8	FBXO8 (ENSSHBG00005013595) #9	HAND2 (ENSSHBG00005013605) #13	SCRG1 (ENSSHBG00005013612) #15	SAP30 (ENSSHBG00005013619) #16	HMGB2 (ENSSHBG00005013630) #17	ENSSHBG00005013638	GALNTL6 (ENSSHBG00005013651) #21	AADAT (ENSSHBG00005013662) #22	MFAP3L (ENSSHBG00005000503) #23	HPF1 (ENSSHBG00005000510) #26	CLCN3 (ENSSHBG00005005187) #27	NEK1 (ENSSHBG00005005255) #28	SH3RF1 (ENSSHBG00005005314) #29	CBR4 (ENSSHBG00005005334) #30	PALLD (ENSSHBG00005005690) #32	ENSSHBG00005008898 #34	ENSSHBG00005008911	ANXA10 (ENSSHBG00005008926) #35	SPOCK3 (ENSSHBG00005008946) #36	TLL1 (ENSSHBG00005008959) #37	CPE (ENSSHBG00005008973)	MSMO1 (ENSSHBG00005008984)	KLHL2 (ENSSHBG00005008996)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000167073	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Anatidae	ANCESTRAL SPECIES	2	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00960000190177	ENSGT00940000166775	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Pink-footed goose	MODERN SPECIES	114																AADAT (ENSABRG00000019482) #22	MFAP3L (ENSABRG00000019467) #23	ENSABRG00000019461	HPF1 (ENSABRG00000019454) #26	CLCN3 (ENSABRG00000018429) #27	NEK1 (ENSABRG00000017138) #28	SH3RF1 (ENSABRG00000017004) #29	CBR4 (ENSABRG00000016965) #30	PALLD (ENSABRG00000016648) #32	DDX60 (ENSABRG00000016611) #34	ENSABRG00000016598	ANXA10 (ENSABRG00000016590) #35	ENSABRG00000016589	SPOCK3 (ENSABRG00000016578) #36	ENSABRG00000016576	TLL1 (ENSABRG00000016533) #37
Duck	MODERN SPECIES	22	SPCS3 (ENSAPLG00000005667)	ASB5 (ENSAPLG00000005751)	SPATA4 (ENSAPLG00000006032)	WDR17 (ENSAPLG00000006133)	ENSAPLG00000020184	GPM6A (ENSAPLG00000002472)	GLRA3 (ENSAPLG00000002786)	HPGD (ENSAPLG00000002860) #7	CEP44 (ENSAPLG00000003165) #8	FBXO8 (ENSAPLG00000003200) #9	SCRG1 (ENSAPLG00000003271) #15	SAP30 (ENSAPLG00000003274) #16	GALNT7 (ENSAPLG00000003409) #18	HMGB2 (ENSAPLG00000003284) #17	GALNTL6 (ENSAPLG00000003678) #21	AADAT (ENSAPLG00000003855) #22	MFAP3L (ENSAPLG00000004242) #23	CLCN3 (ENSAPLG00000004867) #27	NEK1 (ENSAPLG00000005269) #28	SH3RF1 (ENSAPLG00000006243) #29	CBR4 (ENSAPLG00000006660) #30	PALLD (ENSAPLG00000006750) #32	DDX60 (ENSAPLG00000007120) #34	ENSAPLG00000007278	ANXA10 (ENSAPLG00000007293) #35	SPOCK3 (ENSAPLG00000013179) #36	TLL1 (ENSAPLG00000013257) #37	CPE (ENSAPLG00000004644)	MSMO1 (ENSAPLG00000004461)	KLHL2 (ENSAPLG00000003706)	TMEM192 (ENSAPLG00000003617)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000161766	ENSGT00390000004179	ENSGT00940000159346	ENSGT00770000121728	ENSGT01100000263683	ENSGT00390000013749	ENSGT00940000156434	ENSGT00940000158012	ENSGT00940000157158.d	ENSGT00940000157225 #37	ENSGT00940000157828 #36	ENSGT00940000160623 #35	ENSGT00940000167073	ENSGT00940000157188 #34	ENSGT00940000153441.a.a #32	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000158277	ENSGT01030000234904	ENSGT00940000156295	ENSGT00940000160324	ENSGT00940000155249	ENSGT00940000154953	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090
Japanese quail	MODERN SPECIES	22	TMA16 (ENSCJPG00005000705)	MARCHF1 (ENSCJPG00005000708)	SMIM31 (ENSCJPG00005000712)	ENSCJPG00005000714	TMEM192 (ENSCJPG00005000715)	KLHL2 (ENSCJPG00005000718)	MSMO1 (ENSCJPG00005000721)	CPE (ENSCJPG00005000725)	TLL1 (ENSCJPG00005000730) #37	SPOCK3 (ENSCJPG00005000751) #36	ENSCJPG00005000756	ANXA10 (ENSCJPG00005000758) #35	ENSCJPG00005000761	DDX60 (ENSCJPG00005000762) #34	PALLD (ENSCJPG00005000764) #32	AADAT (ENSCJPG00005000766) #22	MFAP3L (ENSCJPG00005000768) #23	HPF1 (ENSCJPG00005000770) #26	CLCN3 (ENSCJPG00005000773) #27	NEK1 (ENSCJPG00005000788) #28	SH3RF1 (ENSCJPG00005000830) #29	CBR4 (ENSCJPG00005000833) #30	PCDH10 (ENSCJPG00005000865)	ENSCJPG00005000866	PCDH18 (ENSCJPG00005001014)	SLC7A11 (ENSCJPG00005001052)	NOCT (ENSCJPG00005001095)	ELF2 (ENSCJPG00005001105)	ENSCJPG00005001114	NAA15 (ENSCJPG00005001125)	ENSCJPG00005001134
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000160268	ENSGT00940000161766	ENSGT00390000004179	ENSGT00940000159346	ENSGT01100000263683	ENSGT00390000013749	ENSGT00940000156434	ENSGT00940000158012	ENSGT00940000157158.d	ENSGT00940000157225 #37	ENSGT00940000157828 #36	ENSGT00940000160623 #35	ENSGT00940000167073	ENSGT00940000157188 #34	ENSGT00940000153441.a.a #32	ENSGT00390000004594.a #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000158277	ENSGT01030000234904	ENSGT00940000156295	ENSGT00940000160324	ENSGT00940000155249	ENSGT00940000154953	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183
Turkey	MODERN SPECIES	24	NPY5R (ENSMGAG00000017038)	MARCHF1 (ENSMGAG00000002154)	TMA16 (ENSMGAG00000002147)	ENSMGAG00000017587	TMEM192 (ENSMGAG00000002167)	KLHL2 (ENSMGAG00000002182)	MSMO1 (ENSMGAG00000002208)	CPE (ENSMGAG00000002224)	TLL1 (ENSMGAG00000002241) #37	SPOCK3 (ENSMGAG00000002370) #36	ANXA10 (ENSMGAG00000017273) #35	ENSMGAG00000017870	DDX60 (ENSMGAG00000002432) #34	ENSMGAG00000017559	PALLD (ENSMGAG00000002454) #32	AADAT (ENSMGAG00000002461) #22	MFAP3L (ENSMGAG00000002495) #23	HPF1 (ENSMGAG00000002498) #26	CLCN3 (ENSMGAG00000002509) #27	NEK1 (ENSMGAG00000017234) #28	SH3RF1 (ENSMGAG00000002651) #29	CBR4 (ENSMGAG00000002684) #30	ENSMGAG00000018383	PCDH18 (ENSMGAG00000002703)	SLC7A11 (ENSMGAG00000002726)	NOCT (ENSMGAG00000002778)	ELF2 (ENSMGAG00000002791)	ENSMGAG00000022293	NAA15 (ENSMGAG00000002831)	RAB33B (ENSMGAG00000002900)	ENSMGAG00000002901
Chicken	MODERN SPECIES	33	TMA16 (ENSGALG00010007955)	MARCH1 (ENSGALG00010007980)	APELA (ENSGALG00010007985)	TMEM192 (ENSGALG00010007997)	KLHL2 (ENSGALG00010007872)	MSMO1 (ENSGALG00010007877)	CPE (ENSGALG00010007882)	ENSGALG00010009067	TLL1 (ENSGALG00010009080) #37	SPOCK3 (ENSGALG00010008036) #36	ENSGALG00010008040	ANXA10 (ENSGALG00010008049) #35	ENSGALG00010008059	DDX60 (ENSGALG00010008064) #34	PALLD (ENSGALG00010008296) #32	AADAT (ENSGALG00010008325) #22	MFAP3L (ENSGALG00010008344) #23	HPF1 (ENSGALG00010008358) #26	CLCN3 (ENSGALG00010008372) #27	NEK1 (ENSGALG00010008412) #28	SH3RF1 (ENSGALG00010008431) #29	CBR4 (ENSGALG00010008007) #30	ENSGALG00010009184	PCDH10 (ENSGALG00010009214)	ENSGALG00010009222	PCDH18 (ENSGALG00010009234)	ENSGALG00010008003	SLC7A11 (ENSGALG00010008444)	NOCT (ENSGALG00010008469)	ELF2 (ENSGALG00010010009)	ENSGALG00010008500
African ostrich	MODERN SPECIES	179																AADAT (ENSSCUG00000001831) #22	MFAP3L (ENSSCUG00000001830) #23
Australian saltwater crocodile	MODERN SPECIES	33	WDR17 (ENSCPRG00005011361)	GPM6A (ENSCPRG00005011345)	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331)	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324) #8	FBXO8 (ENSCPRG00005011320) #9	HAND2 (ENSCPRG00005011318) #13	SCRG1 (ENSCPRG00005011314) #15	SAP30 (ENSCPRG00005011312) #16	HMGB2 (ENSCPRG00005011309) #17	GALNT7 (ENSCPRG00005011291) #18	ENSCPRG00005011282 #21	ENSCPRG00005011276 #21	ENSCPRG00005011271	ENSCPRG00005011261 #22	ENSCPRG00005011248 #22	ENSCPRG00005011190 #22	MFAP3L (ENSCPRG00005011182) #23	HPF1 (ENSCPRG00005011172) #26	CLCN3 (ENSCPRG00005011159) #27	NEK1 (ENSCPRG00005011096) #28	SH3RF1 (ENSCPRG00005011088) #29	CBR4 (ENSCPRG00005011084) #30	PALLD (ENSCPRG00005010949) #32	ANXA10 (ENSCPRG00005010935) #35	DDX60 (ENSCPRG00005010657) #34	SPOCK3 (ENSCPRG00005010612) #36	TLL1 (ENSCPRG00005010590) #37	CPE (ENSCPRG00005010566)	MSMO1 (ENSCPRG00005010564)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Three-toed box turtle	MODERN SPECIES	26	SPATA4 (ENSTMTG00000005358)	WDR17 (ENSTMTG00000005197)	GPM6A (ENSTMTG00000005149)	GLRA3 (ENSTMTG00000005114)	HPGD (ENSTMTG00000005087) #7	CEP44 (ENSTMTG00000004951) #8	FBXO8 (ENSTMTG00000004929) #9	HAND2 (ENSTMTG00000004921) #13	SCRG1 (ENSTMTG00000004909) #15	SAP30 (ENSTMTG00000004897) #16	HMGB2 (ENSTMTG00000004883) #17	GALNT7 (ENSTMTG00000004870) #18	ENSTMTG00000004848	ENSTMTG00000004816 #21	ENSTMTG00000004787 #21	ENSTMTG00000004740 #22	ENSTMTG00000004299 #22	MFAP3L (ENSTMTG00000004256) #23	HPF1 (ENSTMTG00000004238) #26	CLCN3 (ENSTMTG00000004179) #27	NEK1 (ENSTMTG00000003707) #28	SH3RF1 (ENSTMTG00000003623) #29	CBR4 (ENSTMTG00000003604) #30	PALLD (ENSTMTG00000003582) #32	ENSTMTG00000003575	DDX60 (ENSTMTG00000003118) #34	ENSTMTG00000001398 #34	ENSTMTG00000000898	ANXA10 (ENSTMTG00000000863) #35	ENSTMTG00000000841 #36	ENSTMTG00000000817 #36
painted turtle	MODERN SPECIES	2396	PLXDC2 (ENSCPBG00000015081)	ENSCPBG00000015073	MALRD1 (ENSCPBG00000015068)	ARL5B (ENSCPBG00000015064)	NSUN6 (ENSCPBG00000015063)	CACNB2 (ENSCPBG00000015061)	ENSCPBG00000015060	SLC39A12 (ENSCPBG00000015056)	ENSCPBG00000015055	ENSCPBG00000015054	ENSCPBG00000015049	ENSCPBG00000015045	ENSCPBG00000015041	STAM (ENSCPBG00000015036)	HACD1 (ENSCPBG00000015032)	ENSCPBG00000015023 #22
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000009223	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT01000000217744	ENSGT00940000153441.a.a.cb #32	ENSGT00940000153441.a.a.bb #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d
Goode s thornscrub tortoise	MODERN SPECIES	19	ASB5 (ENSGEVG00005003356)	SPATA4 (ENSGEVG00005003382)	WDR17 (ENSGEVG00005003558)	GPM6A (ENSGEVG00005003929)	GLRA3 (ENSGEVG00005003944)	HPGD (ENSGEVG00005003961) #7	CEP44 (ENSGEVG00005003971) #8	FBXO8 (ENSGEVG00005004010) #9	HAND2 (ENSGEVG00005004018) #13	SCRG1 (ENSGEVG00005004025) #15	SAP30 (ENSGEVG00005004034) #16	HMGB2 (ENSGEVG00005004044) #17	GALNT7 (ENSGEVG00005004062) #18	ENSGEVG00005004085 #21	ENSGEVG00005004102 #21	ENSGEVG00005004144 #22	ENSGEVG00005004201 #22	MFAP3L (ENSGEVG00005004240) #23	HPF1 (ENSGEVG00005004257) #26	CLCN3 (ENSGEVG00005004287) #27	NEK1 (ENSGEVG00005004393) #28	SH3RF1 (ENSGEVG00005004432) #29	ENSGEVG00005004456	ENSGEVG00005004489 #32	ENSGEVG00005004581 #32	ENSGEVG00005004639	ENSGEVG00005006422 #34	ANXA10 (ENSGEVG00005006474) #35	ENSGEVG00005006528 #36	ENSGEVG00005006562 #36	TLL1 (ENSGEVG00005006646) #37
Abingdon island giant tortoise	MODERN SPECIES	2254																ENSCABG00000007445 #22	ENSCABG00000007487 #22	MFAP3L (ENSCABG00000007489) #23	HPF1 (ENSCABG00000007491) #26	CLCN3 (ENSCABG00000007496) #27	ENSCABG00000008041 #28	ENSCABG00000008044 #28	SH3RF1 (ENSCABG00000008047) #29	ENSCABG00000008100	ENSCABG00000008103 #32
Chinese turtle	MODERN SPECIES	166															ENSPSIG00000009023	AADAT (ENSPSIG00000009122) #22	MFAP3L (ENSPSIG00000011328) #23	HPF1 (ENSPSIG00000011612) #26	CLCN3 (ENSPSIG00000012094) #27	NEK1 (ENSPSIG00000014156) #28	SH3RF1 (ENSPSIG00000017101) #29	CBR4 (ENSPSIG00000017496) #30	PALLD (ENSPSIG00000017707) #32	DDX60 (ENSPSIG00000004307) #34	ENSPSIG00000004424	ANXA10 (ENSPSIG00000004447) #35	SPOCK3 (ENSPSIG00000004633) #36	TLL1 (ENSPSIG00000004710) #37	CPE (ENSPSIG00000005030)	MSMO1 (ENSPSIG00000005113)	KLHL2 (ENSPSIG00000005124)
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Laterata	ANCESTRAL SPECIES	9	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873.a #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225.t #37	ENSGT00940000157158.d	ENSGT00940000158012
Common wall lizard	MODERN SPECIES	17	ENSPMRG00000010390 #8	FBXO8 (ENSPMRG00000010399) #9	ENSPMRG00000010404	ENSPMRG00000010414	HAND2 (ENSPMRG00000010419) #13	SCRG1 (ENSPMRG00000010423) #15	SAP30 (ENSPMRG00000010430) #16	ENSPMRG00000010436 #17	GALNT7 (ENSPMRG00000010446) #18	GALNTL6 (ENSPMRG00000010453) #21	ENSPMRG00000010460	ENSPMRG00000010466	ENSPMRG00000010472	ENSPMRG00000010475	ENSPMRG00000010481 #22	ENSPMRG00000010491 #22	ENSPMRG00000010503	HPF1 (ENSPMRG00000010507) #26	CLCN3 (ENSPMRG00000010515) #27	NEK1 (ENSPMRG00000010552) #28	SH3RF1 (ENSPMRG00000010636) #29	ENSPMRG00000010649	CBR4 (ENSPMRG00000010655) #30	PALLD (ENSPMRG00000010672) #32	ENSPMRG00000010679	DDX60 (ENSPMRG00000010909) #34	ANXA10 (ENSPMRG00000011860) #35	ENSPMRG00000011871	SPOCK3 (ENSPMRG00000011877) #36	ENSPMRG00000011897	TLL1 (ENSPMRG00000011903) #37
Argentine black and white tegu	MODERN SPECIES	26	GPM6A (ENSSMRG00000009451)	ENSSMRG00000009408	GLRA3 (ENSSMRG00000009406)	HPGD (ENSSMRG00000009397) #7	CEP44 (ENSSMRG00000009396) #8	FBXO8 (ENSSMRG00000009395) #9	HAND2 (ENSSMRG00000009378) #13	SCRG1 (ENSSMRG00000009363) #15	SAP30 (ENSSMRG00000009362) #16	HMGB2 (ENSSMRG00000009361) #17	GALNT7 (ENSSMRG00000009360) #18	ENSSMRG00000009353 #21	ENSSMRG00000009344 #21	ENSSMRG00000009343 #21	ENSSMRG00000009328 #22	ENSSMRG00000009310 #22	MFAP3L (ENSSMRG00000009309) #23	HPF1 (ENSSMRG00000009308) #26	CLCN3 (ENSSMRG00000009307) #27	NEK1 (ENSSMRG00000004496) #28	SH3RF1 (ENSSMRG00000004477) #29	CBR4 (ENSSMRG00000004473) #30	PALLD (ENSSMRG00000004456) #32	ENSSMRG00000002979 #34	ENSSMRG00000002951 #34	ENSSMRG00000002908	ANXA10 (ENSSMRG00000002887) #35	SPOCK3 (ENSSMRG00000002829) #36	ENSSMRG00000002782 #37	CPE (ENSSMRG00000002666)	MSMO1 (ENSSMRG00000002657)
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000167073	ENSGT00940000160623 #35
Lizard	MODERN SPECIES	830											ENSACAG00000005382 #21	ENSACAG00000005377 #21	ENSACAG00000041813 #21	ENSACAG00000042753	ENSACAG00000015588 #22	ENSACAG00000028358 #22	MFAP3L (ENSACAG00000015641) #23	HPF1 (ENSACAG00000015642) #26	CLCN3 (ENSACAG00000015662) #27	NEK1 (ENSACAG00000015828) #28	ENSACAG00000044070	SH3RF1 (ENSACAG00000015860) #29	ENSACAG00000039360	CBR4 (ENSACAG00000015942) #30	PALLD (ENSACAG00000015958) #32	ENSACAG00000037033	ENSACAG00000023096	DDX60 (ENSACAG00000016010) #34	ENSACAG00000038347	ANXA10 (ENSACAG00000036607) #35
tuatara	MODERN SPECIES	1920															ENSSPUG00000019266 #22	ENSSPUG00000019265 #22	HPF1 (ENSSPUG00000019263) #26	CLCN3 (ENSSPUG00000019262) #27	NEK1 (ENSSPUG00000019261) #28	SH3RF1 (ENSSPUG00000019260) #29	CBR4 (ENSSPUG00000019259) #30	PALLD (ENSSPUG00000019258) #32	DDX60 (ENSSPUG00000019257) #34	ANXA10 (ENSSPUG00000019256) #35
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Emydidae	ANCESTRAL SPECIES	1	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000168298	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000159795.b	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
painted turtle	MODERN SPECIES	917																ENSCPBG00000027213 #22	MFAP3L (ENSCPBG00000027214) #23	HPF1 (ENSCPBG00000027216) #26	CLCN3 (ENSCPBG00000027218) #27	NEK1 (ENSCPBG00000027255) #28	SH3RF1 (ENSCPBG00000027515) #29	CBR4 (ENSCPBG00000027519) #30	PALLD (ENSCPBG00000027526) #32	DDX60 (ENSCPBG00000027534) #34	ENSCPBG00000027538	ENSCPBG00000027539	ENSCPBG00000027541	ENSCPBG00000027543	ENSCPBG00000027544	ENSCPBG00000027546	ENSCPBG00000027549
Three-toed box turtle	MODERN SPECIES	26	WDR17 (ENSTMTG00000005197)	GPM6A (ENSTMTG00000005149)	GLRA3 (ENSTMTG00000005114)	HPGD (ENSTMTG00000005087) #7	CEP44 (ENSTMTG00000004951) #8	FBXO8 (ENSTMTG00000004929) #9	HAND2 (ENSTMTG00000004921) #13	SCRG1 (ENSTMTG00000004909) #15	SAP30 (ENSTMTG00000004897) #16	HMGB2 (ENSTMTG00000004883) #17	GALNT7 (ENSTMTG00000004870) #18	ENSTMTG00000004848	ENSTMTG00000004816 #21	ENSTMTG00000004787 #21	ENSTMTG00000004740 #22	ENSTMTG00000004299 #22	MFAP3L (ENSTMTG00000004256) #23	HPF1 (ENSTMTG00000004238) #26	CLCN3 (ENSTMTG00000004179) #27	NEK1 (ENSTMTG00000003707) #28	SH3RF1 (ENSTMTG00000003623) #29	CBR4 (ENSTMTG00000003604) #30	PALLD (ENSTMTG00000003582) #32	ENSTMTG00000003575	DDX60 (ENSTMTG00000003118) #34	ENSTMTG00000001398 #34	ENSTMTG00000000898	ANXA10 (ENSTMTG00000000863) #35	ENSTMTG00000000841 #36	ENSTMTG00000000817 #36	TLL1 (ENSTMTG00000000801) #37
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT01000000217744	ENSGT00940000153441.a.a.cb #32	ENSGT00940000153441.a.a.bb #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012
Abingdon island giant tortoise	MODERN SPECIES	2254															ENSCABG00000007445 #22	ENSCABG00000007487 #22	MFAP3L (ENSCABG00000007489) #23	HPF1 (ENSCABG00000007491) #26	CLCN3 (ENSCABG00000007496) #27	ENSCABG00000008041 #28	ENSCABG00000008044 #28	SH3RF1 (ENSCABG00000008047) #29	ENSCABG00000008100	ENSCABG00000008103 #32
Goode s thornscrub tortoise	MODERN SPECIES	19	SPATA4 (ENSGEVG00005003382)	WDR17 (ENSGEVG00005003558)	GPM6A (ENSGEVG00005003929)	GLRA3 (ENSGEVG00005003944)	HPGD (ENSGEVG00005003961) #7	CEP44 (ENSGEVG00005003971) #8	FBXO8 (ENSGEVG00005004010) #9	HAND2 (ENSGEVG00005004018) #13	SCRG1 (ENSGEVG00005004025) #15	SAP30 (ENSGEVG00005004034) #16	HMGB2 (ENSGEVG00005004044) #17	GALNT7 (ENSGEVG00005004062) #18	ENSGEVG00005004085 #21	ENSGEVG00005004102 #21	ENSGEVG00005004144 #22	ENSGEVG00005004201 #22	MFAP3L (ENSGEVG00005004240) #23	HPF1 (ENSGEVG00005004257) #26	CLCN3 (ENSGEVG00005004287) #27	NEK1 (ENSGEVG00005004393) #28	SH3RF1 (ENSGEVG00005004432) #29	ENSGEVG00005004456	ENSGEVG00005004489 #32	ENSGEVG00005004581 #32	ENSGEVG00005004639	ENSGEVG00005006422 #34	ANXA10 (ENSGEVG00005006474) #35	ENSGEVG00005006528 #36	ENSGEVG00005006562 #36	TLL1 (ENSGEVG00005006646) #37	CPE (ENSGEVG00005006900)
Archosauria	ANCESTRAL SPECIES	1	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00940000167698	ENSGT00390000006915.d	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038 #21	ENSGT00390000004594.a #22	ENSGT00390000004594.b #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a #32	ENSGT00940000157188 #34	ENSGT00940000165556	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158.d	ENSGT00940000158012	ENSGT00940000156434
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	33	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331)	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324) #8	FBXO8 (ENSCPRG00005011320) #9	HAND2 (ENSCPRG00005011318) #13	SCRG1 (ENSCPRG00005011314) #15	SAP30 (ENSCPRG00005011312) #16	HMGB2 (ENSCPRG00005011309) #17	GALNT7 (ENSCPRG00005011291) #18	ENSCPRG00005011282 #21	ENSCPRG00005011276 #21	ENSCPRG00005011271	ENSCPRG00005011261 #22	ENSCPRG00005011248 #22	ENSCPRG00005011190 #22	MFAP3L (ENSCPRG00005011182) #23	HPF1 (ENSCPRG00005011172) #26	CLCN3 (ENSCPRG00005011159) #27	NEK1 (ENSCPRG00005011096) #28	SH3RF1 (ENSCPRG00005011088) #29	CBR4 (ENSCPRG00005011084) #30	PALLD (ENSCPRG00005010949) #32	ANXA10 (ENSCPRG00005010935) #35	DDX60 (ENSCPRG00005010657) #34	SPOCK3 (ENSCPRG00005010612) #36	TLL1 (ENSCPRG00005010590) #37	CPE (ENSCPRG00005010566)	MSMO1 (ENSCPRG00005010564)	KLHL2 (ENSCPRG00005010559)	ENSCPRG00005010551
Australian saltwater crocodile	MODERN SPECIES	33	GPM6A (ENSCPRG00005011345)	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331)	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324) #8	FBXO8 (ENSCPRG00005011320) #9	HAND2 (ENSCPRG00005011318) #13	SCRG1 (ENSCPRG00005011314) #15	SAP30 (ENSCPRG00005011312) #16	HMGB2 (ENSCPRG00005011309) #17	GALNT7 (ENSCPRG00005011291) #18	ENSCPRG00005011282 #21	ENSCPRG00005011276 #21	ENSCPRG00005011271	ENSCPRG00005011261 #22	ENSCPRG00005011248 #22	ENSCPRG00005011190 #22	MFAP3L (ENSCPRG00005011182) #23	HPF1 (ENSCPRG00005011172) #26	CLCN3 (ENSCPRG00005011159) #27	NEK1 (ENSCPRG00005011096) #28	SH3RF1 (ENSCPRG00005011088) #29	CBR4 (ENSCPRG00005011084) #30	PALLD (ENSCPRG00005010949) #32	ANXA10 (ENSCPRG00005010935) #35	DDX60 (ENSCPRG00005010657) #34	SPOCK3 (ENSCPRG00005010612) #36	TLL1 (ENSCPRG00005010590) #37	CPE (ENSCPRG00005010566)	MSMO1 (ENSCPRG00005010564)	KLHL2 (ENSCPRG00005010559)
Anura	ANCESTRAL SPECIES	2	ENSGT00940000159851	ENSGT00910000144159.B	ENSGT00940000158602	ENSGT00390000006915.d	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368	ENSGT00940000154593.a.b #7	ENSGT00390000009873 #8	ENSGT00940000158356 #9	ENSGT00940000160772 #13	ENSGT00390000009191 #15	ENSGT00390000006633.b #16	ENSGT00940000154466 #17	ENSGT00940000158105 #18	ENSGT00940000155038.b #21	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00390000014876 #26	ENSGT00940000153763.b #27	ENSGT00940000158460 #28	ENSGT00940000155875 #29	ENSGT00940000157620 #30	ENSGT00940000153441.a.a.b #32	ENSGT00940000157188 #34	ENSGT00940000160623 #35	ENSGT00940000157828 #36	ENSGT00940000157225 #37	ENSGT00940000157158	ENSGT00940000158012	ENSGT00940000156434	ENSGT00390000013749
Leishan spiny toad	MODERN SPECIES		GALNT7 (ENSLLEG00000013592) #18	ENSLLEG00000013502	ENSLLEG00000013447	ENSLLEG00000013404	ENSLLEG00000013222 #21	ENSLLEG00000013195	ENSLLEG00000013182	ENSLLEG00000013127 #21	ENSLLEG00000013100	ENSLLEG00000013079	ENSLLEG00000013062	ENSLLEG00000013046	ENSLLEG00000013033	ENSLLEG00000013019	ENSLLEG00000012082	AADAT (ENSLLEG00000011998) #22	MFAP3L (ENSLLEG00000011957) #23	HPF1 (ENSLLEG00000011731) #26	ENSLLEG00000011498 #27	NEK1 (ENSLLEG00000010676) #28	SH3RF1 (ENSLLEG00000010395) #29	CBR4 (ENSLLEG00000010324) #30	ENSLLEG00000010212 #32	ENSLLEG00000010194	ENSLLEG00000010168 #32	ENSLLEG00000010145	ENSLLEG00000009909 #34	ENSLLEG00000009686 #35	ENSLLEG00000009452	ENSLLEG00000009419	ENSLLEG00000009390
Frog	MODERN SPECIES		wdr17 (ENSXETG00000002453)	gpm6a (ENSXETG00000036810)	ENSXETG00000041411	glra3 (ENSXETG00000002460)	cep44 (ENSXETG00000032956) #8	fbxo8 (ENSXETG00000016906) #9	ENSXETG00000045901	hand2 (ENSXETG00000016908) #13	scrg1 (ENSXETG00000036235) #15	hmgb2 (ENSXETG00000016916) #17	sap30 (ENSXETG00000016915) #16	galnt7 (ENSXETG00000016917) #18	ENSXETG00000047064	galntl6 (ENSXETG00000016922) #21	ENSXETG00000043847	aadat (ENSXETG00000023143) #22	hpf1 (ENSXETG00000023144) #23	clcn3 (ENSXETG00000023146) #27	nek1 (ENSXETG00000023155) #28	sh3rf1 (ENSXETG00000004943) #29	cbr4 (ENSXETG00000004944) #30	palld (ENSXETG00000033874) #32	ENSXETG00000043858	ddx60 (ENSXETG00000043648) #34	ENSXETG00000030600	ENSXETG00000045095	anxa10 (ENSXETG00000032881) #35	ENSXETG00000044473	spock3 (ENSXETG00000030204) #36	tll1 (ENSXETG00000017032) #37	cops6 (ENSXETG00000017037)
Coelacanth	MODERN SPECIES	1523																AADAT (ENSLACG00000003079) #22	MFAP3L (ENSLACG00000005159) #23	HPF1 (ENSLACG00000007085) #26	CLCN3 (ENSLACG00000007621) #27	NEK1 (ENSLACG00000010133) #28
Actinopterygii	ANCESTRAL SPECIES	683																ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27
Reedfish	MODERN SPECIES	13	cnot7 (ENSECRG00000001312)	zdhhc2 (ENSECRG00000001158)	MICU3 (ENSECRG00000001103)	fgf20a (ENSECRG00000001076)	FAT4 (ENSECRG00000001042)	ANKRD50 (ENSECRG00000000997)	SPATA5 (ENSECRG00000000946)	NUDT6 (ENSECRG00000004232)	FGF2 (ENSECRG00000004225)	BBS12 (ENSECRG00000004215)	ENSECRG00000004207	adad1 (ENSECRG00000004183)	kiaa1109 (ENSECRG00000004144)	trpc3 (ENSECRG00000004043)	bbs7 (ENSECRG00000004022)	AADAT (ENSECRG00000004005) #22	mfap3l (ENSECRG00000004003) #23	rbpjb (ENSECRG00000003971)	CCKAR (ENSECRG00000003953)	tbc1d19 (ENSECRG00000003917)	STIM2 (ENSECRG00000003906)	ENSECRG00000003896	PCDH7 (ENSECRG00000003889)	ENSECRG00000003885	ENSECRG00000003880	ARAP2 (ENSECRG00000003861)	DTHD1 (ENSECRG00000003850)	ENSECRG00000003845	NWD2 (ENSECRG00000003842)	RELL1 (ENSECRG00000003837)	pgm2 (ENSECRG00000003830)
Neopterygii	ANCESTRAL SPECIES	345												ENSGT00530000063169.b.a	ENSGT00530000063074.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000155279.C	ENSGT00940000155150.a
Spotted gar	MODERN SPECIES	670	sgms2b (ENSLOCG00000012660)	papss1 (ENSLOCG00000012667)	dkk2 (ENSLOCG00000012675)	GIMD1 (ENSLOCG00000012679)	aimp1a (ENSLOCG00000012682)	ENSLOCG00000012690	spata6l (ENSLOCG00000012696)	slc1a1 (ENSLOCG00000012701)	slc1a1 (ENSLOCG00000012708)	RAP1GDS1 (ENSLOCG00000012715)	tspan5b (ENSLOCG00000012728)	trmt10b (ENSLOCG00000012735)	ENSLOCG00000012739	intu (ENSLOCG00000012742)	ino80b (ENSLOCG00000012755)	AADAT (ENSLOCG00000012761) #22	mfap3l (ENSLOCG00000012768) #23	ENSLOCG00000012772	DNAH6 (ENSLOCG00000012784)	ENSLOCG00000012794	chrnb3b (ENSLOCG00000012803)	chrna6 (ENSLOCG00000012810)	RNF38 (ENSLOCG00000012813)	zgc:195282 (ENSLOCG00000012820)	melk (ENSLOCG00000012822)	pax5 (ENSLOCG00000012825)	zcchc7 (ENSLOCG00000012834)	ENSLOCG00000012840	grhprb (ENSLOCG00000012844)	grhpra (ENSLOCG00000012851)	ZBTB5 (ENSLOCG00000012855)
Osteoglossocephalai	ANCESTRAL SPECIES	200											ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00530000063074.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000155279.C.b	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183712	ENSGT00390000005589.a.a	ENSGT00940000157318
Osteoglossiformes	ANCESTRAL SPECIES	89											ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00530000063074.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00940000155279.C.b	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a	ENSGT01030000234563.b.a.a	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A
Asian bonytongue	MODERN SPECIES		TESK1 (ENSSFOG00015030888)	ENSSFOG00015007508	nelfa (ENSSFOG00015018503)	C4orf48 (ENSSFOG00015025259)	nat8l (ENSSFOG00015018542)	ENSSFOG00015031489	haus3 (ENSSFOG00015021882)	ENSSFOG00015027432	ENSSFOG00015021876	ENSSFOG00015026559	ENSSFOG00015029111	ENSSFOG00015021359	trmt10b (ENSSFOG00015033105)	intu (ENSSFOG00015021338)	ino80b (ENSSFOG00015021329)	AADAT (ENSSFOG00015021299) #22	mfap3l (ENSSFOG00015028214) #23	CLCN3 (ENSSFOG00015021235) #27	ANK2 (ENSSFOG00015021177)	ENSSFOG00015021102	ARSJ (ENSSFOG00015032330)	mad2l1 (ENSSFOG00015021070)	pde5ab (ENSSFOG00015020998)	ENSSFOG00015030389	zcchc4 (ENSSFOG00015020941)	ABLIM2 (ENSSFOG00015020774)	AFAP1 (ENSSFOG00015020672)	SORCS2 (ENSSFOG00015020627)	grpel1 (ENSSFOG00015020614)	tada2b (ENSSFOG00015027209)	ccdc96 (ENSSFOG00015031962)
P. kingsleyae	MODERN SPECIES	214	pik3c3 (ENSPKIG00000015200)	TESK1 (ENSPKIG00000015256)	nelfa (ENSPKIG00000015309)	ENSPKIG00000015352	nat8l (ENSPKIG00000015368)	poln (ENSPKIG00000015380)	haus3 (ENSPKIG00000015434)	zgc:56493 (ENSPKIG00000015449)	SVEP1 (ENSPKIG00000015493)	ENSPKIG00000015625	ENSPKIG00000015743	trmt10b (ENSPKIG00000015763)	ENSPKIG00000015789	intu (ENSPKIG00000015816)	ino80b (ENSPKIG00000015858)	AADAT (ENSPKIG00000015890) #22	mfap3l (ENSPKIG00000015936) #23	ENSPKIG00000015951	CLCN3 (ENSPKIG00000016012) #27	ANK2 (ENSPKIG00000016128)	ENSPKIG00000016197	camk2d1 (ENSPKIG00000016240)	ARSJ (ENSPKIG00000016348)	mad2l1 (ENSPKIG00000016368)	pde5ab (ENSPKIG00000016389)	zcchc4 (ENSPKIG00000016454)	ENSPKIG00000016513	ABLIM2 (ENSPKIG00000016529)	AFAP1 (ENSPKIG00000016612)	SORCS2 (ENSPKIG00000016962)	tada2b (ENSPKIG00000017247)
Clupeocephala	ANCESTRAL SPECIES	56	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000162556.G.c.b.b	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000168521	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677
Otomorpha	ANCESTRAL SPECIES	13	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000162556.G.c.b.b	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000156887.a	ENSGT00940000154819.a.b.c.a	ENSGT00390000005605	ENSGT00390000005584	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a
Clupeiformes	ANCESTRAL SPECIES	256												ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a	ENSGT00390000006734.a
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES		ctc1 (ENSDCDG00000019558)	HMGB2 (ENSDCDG00000019550) #17	zgc:158659 (ENSDCDG00000019538)	MEPCE (ENSDCDG00000019529)	KCNAB3 (ENSDCDG00000019435)	trappc1 (ENSDCDG00000019420)	psmb6 (ENSDCDG00000019417)	KIF1C (ENSDCDG00000017321)	actl6b (ENSDCDG00000017283)	ENSDCDG00000017274	eif4e2rs1 (ENSDCDG00000017269)	slc12a9 (ENSDCDG00000017263)	ENSDCDG00000017261	intu (ENSDCDG00000017259)	ino80b (ENSDCDG00000017257)	AADAT (ENSDCDG00000017251) #22	mfap3l (ENSDCDG00000017249) #23	CLCN3 (ENSDCDG00000013164) #27	nit1 (ENSDCDG00000012976)	b4gat1 (ENSDCDG00000012963)	ENSDCDG00000012953	ENSDCDG00000012928	ENSDCDG00000012920	ENSDCDG00000012917	pnp5a (ENSDCDG00000012914)	dusp19b (ENSDCDG00000012913)	capn1 (ENSDCDG00000002706)	sf3b2 (ENSDCDG00000002517)	PACS1 (ENSDCDG00000002416)	ENSDCDG00000002391	prkd4 (ENSDCDG00000002369)
Denticle herring	MODERN SPECIES	49										actl6b (ENSDCDG00000026145)	ENSDCDG00000026144	ENSDCDG00000026143	eif4e2rs1 (ENSDCDG00000026141)	intu (ENSDCDG00000026137)	ino80b (ENSDCDG00000026136)	AADAT (ENSDCDG00000026124) #22	mfap3l (ENSDCDG00000026122) #23	ENSDCDG00000026084	nit1 (ENSDCDG00000026077)	b4gat1 (ENSDCDG00000026076)	ENSDCDG00000026074	ENSDCDG00000026073	ENSDCDG00000026072
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000008455	ENSCHAG00000008480	ENSCHAG00000008516	ENSCHAG00000008533	ENSCHAG00000008548	ENSCHAG00000008573	ENSCHAG00000008635	ENSCHAG00000008670	ENSCHAG00000008705	ENSCHAG00000008731	ENSCHAG00000008740	cxcl19 (ENSCHAG00000002490)	trmt10b (ENSCHAG00000002518)	intu (ENSCHAG00000002911)	ino80b (ENSCHAG00000003024)	AADAT (ENSCHAG00000003060) #22	mfap3l (ENSCHAG00000003188) #23	CLCN3 (ENSCHAG00000003331) #27	six7 (ENSCHAG00000006778)	zgc:101810 (ENSCHAG00000006806)	ENSCHAG00000006950	GAL3ST3 (ENSCHAG00000006958)	actn3b (ENSCHAG00000007210)	rbm14b (ENSCHAG00000015737)	ccs (ENSCHAG00000015754)	prkd4 (ENSCHAG00000015775)	ENSCHAG00000015807	ENSCHAG00000015973	sf3b2 (ENSCHAG00000016005)	ENSCHAG00000017184	capn1 (ENSCHAG00000017230)
Otophysi	ANCESTRAL SPECIES	9	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000162556.G.c.b.b	ENSGT00940000154311.a.a.a.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272.ab	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a.j
Characiphysae	ANCESTRAL SPECIES	45	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000180721	ENSGT00940000154311.a.a.a.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272.ab	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00990000210819	ENSGT00950000183024.a.a.a	ENSGT00940000166677
Channel catfish	MODERN SPECIES	26	ENSIPUG00000007979	ENSIPUG00000007993	f13a1b (ENSIPUG00000008006)	ENSIPUG00000008077	ENSIPUG00000008087	ENSIPUG00000008119	ENSIPUG00000008143	ENSIPUG00000008165	ENSIPUG00000008207	cxcl19 (ENSIPUG00000008220)	trmt10b (ENSIPUG00000008246)	ENSIPUG00000008302	tuba1a (ENSIPUG00000008344)	intu (ENSIPUG00000008439)	Ino80b (ENSIPUG00000008469)	aadat (ENSIPUG00000008501) #22	Mfap3l (ENSIPUG00000008540) #23	clcn3 (ENSIPUG00000008587) #27	nit1 (ENSIPUG00000008704)	PFDN2 (ENSIPUG00000008711)	b4gat1 (ENSIPUG00000008741)	six7 (ENSIPUG00000008749)	actr2a (ENSIPUG00000008785)	ENSIPUG00000008845	gal3st3 (ENSIPUG00000008864)	ACTN3 (ENSIPUG00000008891)	rbm14b (ENSIPUG00000009089)	ENSIPUG00000009117	ENSIPUG00000009193	prkd4 (ENSIPUG00000009204)	klc2 (ENSIPUG00000009235)
Characiphysae_b	ANCESTRAL SPECIES	59	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000180721	ENSGT00940000154311.a.a.a.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272.ab	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a.j
Characoidei	ANCESTRAL SPECIES	153		ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000180721	ENSGT01090000260733	ENSGT00940000154311.a.a.a.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272.ab	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a.j
Mexicana tetra	MODERN SPECIES	7	ctnnd2b (ENSAMXG00000018249)	ANKRD33B (ENSAMXG00000032907)	marchf6 (ENSAMXG00000018297)	atpsckmt (ENSAMXG00000018340)	ENSAMXG00000038634	NETO1 (ENSAMXG00000033045)	puf60b (ENSAMXG00000041030)	scrib (ENSAMXG00000018369)	KIF9 (ENSAMXG00000018424)	rgs9bp (ENSAMXG00000033894)	zgc:165532 (ENSAMXG00000037371)	ENSAMXG00000018498	trmt10b (ENSAMXG00000040010)	intu (ENSAMXG00000013548)	ino80b (ENSAMXG00000013592)	AADAT (ENSAMXG00000013572) #22	mfap3l (ENSAMXG00000035320) #23	ENSAMXG00000044096	CLCN3 (ENSAMXG00000013665) #27	ENSAMXG00000029265	nit1 (ENSAMXG00000036198)	pfdn2 (ENSAMXG00000040297)	ENSAMXG00000043301	ENSAMXG00000034231	ENSAMXG00000042971	ENSAMXG00000013749	ENSAMXG00000042533	ENSAMXG00000038467	b4gat1 (ENSAMXG00000036615)	six7 (ENSAMXG00000015883)	zgc:101810 (ENSAMXG00000015900)
Red-bellied piranha	MODERN SPECIES	735										ENSPNAG00000020666	ENSPNAG00000020642	cxcl19 (ENSPNAG00000020610)	trmt10b (ENSPNAG00000020605)	intu (ENSPNAG00000020590)	ino80b (ENSPNAG00000020569)	AADAT (ENSPNAG00000020545) #22	mfap3l (ENSPNAG00000020467) #23	ENSPNAG00000020436	CLCN3 (ENSPNAG00000020373) #27	nit1 (ENSPNAG00000003645)	pfdn2 (ENSPNAG00000020307)	ENSPNAG00000020295
Electric eel	MODERN SPECIES	423										ENSEEEG00000016554	ENSEEEG00000016553	cxcl19 (ENSEEEG00000016552)	trmt10b (ENSEEEG00000016549)	intu (ENSEEEG00000016545)	ino80b (ENSEEEG00000016542)	AADAT (ENSEEEG00000016510) #22	mfap3l (ENSEEEG00000016503) #23	CLCN3 (ENSEEEG00000015798) #27	nit1 (ENSEEEG00000015757)	pfdn2 (ENSEEEG00000015756)	b4gat1 (ENSEEEG00000015755)	six7 (ENSEEEG00000015754)	zgc:101810 (ENSEEEG00000015748)	ENSEEEG00000015745	GAL3ST3 (ENSEEEG00000015742)	actn3b (ENSEEEG00000013785)	rbm14b (ENSEEEG00000013703)	ccs (ENSEEEG00000013693)	prkd4 (ENSEEEG00000013692)	ENSEEEG00000013682	ENSEEEG00000013681
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00940000159506	ENSGT00940000160694.g.b	ENSGT00530000063106.A.s.a.a	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000154311.a.a.a.a	ENSGT01030000235013.A	ENSGT01030000235013.B	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272.ab	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000153968.a.b.b.b	ENSGT00940000157436.a	ENSGT00940000159785
Cyprininae	ANCESTRAL SPECIES	405									ENSGT00940000154311.a.a.a.a.a	ENSGT01030000235013.A.b	ENSGT01030000235013.B.a	ENSGT00940000168006	ENSGT00530000063169.b.a.d	ENSGT00390000001301.f	ENSGT00390000001754.c.a	ENSGT00390000004594 #22	ENSGT00390000011576.a.g #23	ENSGT00940000153763.b.a #27	ENSGT00550000075099	ENSGT00390000009272.ab.b	ENSGT00940000157679.g	ENSGT00940000165710.b	ENSGT00940000165968.a	ENSGT00940000165459.a.a.a.b	ENSGT00950000182923.A.ab.a	ENSGT00940000153968.a.b.b.b.j.a	ENSGT00940000157436.a.a	ENSGT00950000183024.a.a.a.h	ENSGT00940000166677.b	ENSGT00950000183209.a.j.h.b	ENSGT00390000006734.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	230								ENSCARG00000027188	ENSCARG00000027195	ENSCARG00000027212	ENSCARG00000027234	ENSCARG00000027240	cxcl8b.3 (ENSCARG00000027246)	cxcl19 (ENSCARG00000027253)	ino80b (ENSCARG00000027266)	AADAT (ENSCARG00000027287) #22	mfap3l (ENSCARG00000027410) #23	CLCN3 (ENSCARG00000027443) #27	nit1 (ENSCARG00000027849)	pfdn2 (ENSCARG00000027864)	b4gat1 (ENSCARG00000027877)	six7 (ENSCARG00000027887)	zgc:101810 (ENSCARG00000027897)	ENSCARG00000027919	GAL3ST3 (ENSCARG00000027940)	actn3b (ENSCARG00000027969)	rbm14b (ENSCARG00000028271)	CCS (ENSCARG00000028294)	prkd4 (ENSCARG00000028317)	ENSCARG00000028379	ENSCARG00000028394
Goldfish	MODERN SPECIES	2669												ENSCARG00000062171	cxcl8b.3 (ENSCARG00000062184)	cxcl19 (ENSCARG00000062209)	ino80b (ENSCARG00000062236)	AADAT (ENSCARG00000062273) #22	mfap3l (ENSCARG00000062454) #23
Cyprininae_a	ANCESTRAL SPECIES	287	ENSGT00390000008711.g.c	ENSGT00940000161043.d	ENSGT00510000048167.b.a	ENSGT00390000010888.f	ENSGT00390000005650	ENSGT00390000003194.u.a.b.a	ENSGT01030000234592.A.a.a.a.b.d	ENSGT00390000003194.u.a.a.b	ENSGT00940000154311.a.a.a.a.a	ENSGT01030000235013.A.b	ENSGT01030000235013.B.a	ENSGT00940000168006	ENSGT00530000063169.b.a.d	ENSGT00390000001301.f	ENSGT00390000001754.c.a	ENSGT00390000004594 #22	ENSGT00390000011576.a.g #23	ENSGT00940000153763.b.a #27	ENSGT00550000075099	ENSGT00390000009272.ab.b	ENSGT00940000157679.g	ENSGT00940000165710.b	ENSGT00940000165968.b	ENSGT00940000165459.a.a.a.a.b	ENSGT00950000182923.A.ab.b	ENSGT00940000153968.a.b.b.b.j.b	ENSGT00940000157436.a.b	ENSGT00950000183024.a.a.a.g	ENSGT00940000166677.a	ENSGT00950000183209.a.j.h.a	ENSGT00390000006734.a.a
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	6	ENSCCRG00000077805	ENSCCRG00000066640	ENSCCRG00000060416	ENSCCRG00000054017	ENSCCRG00000075039	ENSCCRG00000069818	ENSCCRG00000001194	ENSCCRG00000066717	ENSCCRG00000067583	ENSCCRG00000057001	cxcl8b.3 (ENSCCRG00000032899)	cxcl19 (ENSCCRG00000054772)	trmt10b (ENSCCRG00000009118)	intu (ENSCCRG00000054872)	ino80b (ENSCCRG00000054408)	ENSCCRG00000041446 #22	ENSCCRG00000032127 #27	mfap3l (ENSCCRG00000076167) #23	nit1 (ENSCCRG00000032023)	pfdn2 (ENSCCRG00000074233)	b4gat1 (ENSCCRG00000032012)	six7 (ENSCCRG00000056555)	zgc:101810 (ENSCCRG00000080188)	ENSCCRG00000079158	actn3b (ENSCCRG00000055221)	ENSCCRG00000081983	rbm14b (ENSCCRG00000081232)	prkd4 (ENSCCRG00000029898)	ENSCCRG00000029905	ENSCCRG00000033377	sf3b2 (ENSCCRG00000047391)
Common carp reference	MODERN SPECIES		ENSCCRG00000072394	ENSCCRG00000071434	ENSCCRG00000070799	f13a1b (ENSCCRG00000007841)	ENSCCRG00000007804	ENSCCRG00000078988	ENSCCRG00000033946	ENSCCRG00000079177	ENSCCRG00000057672	ENSCCRG00000043692	ENSCCRG00000074629	cxcl8b.3 (ENSCCRG00000042339)	trmt10b (ENSCCRG00000036858)	intu (ENSCCRG00000041476)	ino80b (ENSCCRG00000034129)	AADAT (ENSCCRG00000059925) #22	mfap3l (ENSCCRG00000069492) #23	CLCN3 (ENSCCRG00000027200) #27	b4gat1 (ENSCCRG00000027190)	zgc:101810 (ENSCCRG00000048389)	ENSCCRG00000082846	actn3b (ENSCCRG00000047390)	rbm14b (ENSCCRG00000047280)	prkd4 (ENSCCRG00000047278)	ENSCCRG00000075328	ENSCCRG00000060679	sf3b2 (ENSCCRG00000034663)	capn1 (ENSCCRG00000005160)	ENSCCRG00000056358	pnp5a (ENSCCRG00000061402)	ENSCCRG00000015316
Golden-line barbel	MODERN SPECIES	480	tex261 (ENSSGRG00000016046)	ENSSGRG00000016044	ENSSGRG00000016042	ENSSGRG00000016038	ENSSGRG00000016037	ENSSGRG00000016036	ENSSGRG00000016035	ENSSGRG00000016033	ENSSGRG00000016030	ENSSGRG00000016028	cxcl8b.3 (ENSSGRG00000016016)	cxcl19 (ENSSGRG00000016011)	trmt10b (ENSSGRG00000015994)	intu (ENSSGRG00000015989)	ENSSGRG00000015988	AADAT (ENSSGRG00000015987) #22	mfap3l (ENSSGRG00000015986) #23	CLCN3 (ENSSGRG00000013879) #27	nit1 (ENSSGRG00000013855)	pfdn2 (ENSSGRG00000013854)	b4gat1 (ENSSGRG00000013853)	six7 (ENSSGRG00000013851)	zgc:101810 (ENSSGRG00000013849)	ENSSGRG00000013848	GAL3ST3 (ENSSGRG00000013847)	actn3b (ENSSGRG00000006073)	rbm14b (ENSSGRG00000005758)	ENSSGRG00000005757	prkd4 (ENSSGRG00000005756)	ENSSGRG00000004147
Zebrafish	MODERN SPECIES	22	jac7 (ENSDARG00000039100)	ENSDARG00000099026	f13a1b (ENSDARG00000036893)	ENSDARG00000070065	ENSDARG00000100612	ENSDARG00000105415	ENSDARG00000099377	ENSDARG00000110601	ENSDARG00000116224	cxcl8b.1 (ENSDARG00000102299)	cxcl8b.3 (ENSDARG00000099169)	cxcl19 (ENSDARG00000102776)	trmt10b (ENSDARG00000060176)	intu (ENSDARG00000077639)	ino80b (ENSDARG00000062749)	AADAT (ENSDARG00000011410) #22	mfap3l (ENSDARG00000062752) #23	ENSDARG00000105378	CLCN3 (ENSDARG00000003269) #27	nit1 (ENSDARG00000070116)	pfdn2 (ENSDARG00000025391)	ENSDARG00000111661	b4gat1 (ENSDARG00000077583)	six7 (ENSDARG00000070107)	zgc:101810 (ENSDARG00000004658)	ENSDARG00000070100	GAL3ST3 (ENSDARG00000073728)	ccs (ENSDARG00000092003)	actn3b (ENSDARG00000001431)	rbm14b (ENSDARG00000103834)	CCS (ENSDARG00000116246)
Euteleosteomorpha	ANCESTRAL SPECIES	28	ENSGT00980000198711	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Acanthomorphata	ANCESTRAL SPECIES	50	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000164121.B	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00980000198711	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Pinecone sodierfish	MODERN SPECIES	9	pik3c3 (ENSMMDG00005013081)	ENSMMDG00005013001	rgp1 (ENSMMDG00005012999)	GBA2 (ENSMMDG00005012805)	ADISSP (ENSMMDG00005012792)	vax2 (ENSMMDG00005012788)	ENSMMDG00005012783	tex261 (ENSMMDG00005012781)	ENSMMDG00005012779	f13a1b (ENSMMDG00005012676)	ENSMMDG00005012671	cxcl19 (ENSMMDG00005012669)	trmt10b (ENSMMDG00005012668)	intu (ENSMMDG00005012659)	ino80b (ENSMMDG00005012653)	AADAT (ENSMMDG00005012625) #22	mfap3l (ENSMMDG00005012615) #23	ENSMMDG00005012614	CLCN3 (ENSMMDG00005008669) #27	nit1 (ENSMMDG00005008600)	pfdn2 (ENSMMDG00005008598)	b4gat1 (ENSMMDG00005008595)	six7 (ENSMMDG00005008594)	zgc:101810 (ENSMMDG00005008591)	ENSMMDG00005008588	GAL3ST3 (ENSMMDG00005008586)	ccs (ENSMMDG00005008530)	rbm14b (ENSMMDG00005008524)	actn3a (ENSMMDG00005008518)	prkd4 (ENSMMDG00005005020)	ENSMMDG00005004965
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00940000156943	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Tiger tail seahorse	MODERN SPECIES	506	wdr55 (ENSHCOG00000012660)	ENSHCOG00000012642	actn3a (ENSHCOG00000012609)	rbm14b (ENSHCOG00000012571)	ccs (ENSHCOG00000012499)	GAL3ST3 (ENSHCOG00000012476)	ENSHCOG00000012455	ADISSP (ENSHCOG00000012426)	vax2 (ENSHCOG00000012416)	tex261 (ENSHCOG00000012400)	f13a1b (ENSHCOG00000012373)	trmt10b (ENSHCOG00000012351)	cxcl19 (ENSHCOG00000012345)	intu (ENSHCOG00000012317)	ino80b (ENSHCOG00000012295)	AADAT (ENSHCOG00000012255) #22	mfap3l (ENSHCOG00000012229) #23	CLCN3 (ENSHCOG00000012213) #27	nit1 (ENSHCOG00000012143)	pfdn2 (ENSHCOG00000012134)	b4gat1 (ENSHCOG00000012128)	six7 (ENSHCOG00000012114)	zgc:101810 (ENSHCOG00000012101)	dvl2 (ENSHCOG00000012079)	ENSHCOG00000012035	agfg2 (ENSHCOG00000012027)	acap1 (ENSHCOG00000012023)	SLC16A13 (ENSHCOG00000012018)	BCL6B (ENSHCOG00000012012)	ENSHCOG00000011983	ENSHCOG00000011977
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.b	ENSGT01030000234847.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Aplocheiloidei	ANCESTRAL SPECIES	55	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.b	ENSGT01030000234847.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Mangrove rivulus	MODERN SPECIES	405											ENSKMAG00000000939	cxcl19 (ENSKMAG00000000924)	trmt10b (ENSKMAG00000000915)	intu (ENSKMAG00000000825)	ino80b (ENSKMAG00000000814)	AADAT (ENSKMAG00000000747) #22	mfap3l (ENSKMAG00000000735) #23	CLCN3 (ENSKMAG00000000691) #27	nit1 (ENSKMAG00000000679)	pfdn2 (ENSKMAG00000000663)	b4gat1 (ENSKMAG00000000653)	six7 (ENSKMAG00000000641)	zgc:101810 (ENSKMAG00000000588)	ENSKMAG00000000572	ENSKMAG00000000561	GAL3ST3 (ENSKMAG00000000538)
Turquoise killifish	MODERN SPECIES	1613	TEX261 (ENSNFUG00015023045)	ENSNFUG00015023041	cant1a (ENSNFUG00015023040)	ENSNFUG00015023036	ENSNFUG00015023035	F13A1B (ENSNFUG00015022473)	cenpx (ENSNFUG00015022445)	ENSNFUG00015022443	ENSNFUG00015022440	ENSNFUG00015022435	ENSNFUG00015022432	ENSNFUG00015022430	trmt10b (ENSNFUG00015022425)	intu (ENSNFUG00015022330)	INO80B (ENSNFUG00015022319)	AADAT (ENSNFUG00015022268) #22	MFAP3L (ENSNFUG00015022249) #23	CLCN3 (ENSNFUG00015021057) #27	NIT1 (ENSNFUG00015021010)	PFDN2 (ENSNFUG00015021008)	B3GNT1 (ENSNFUG00015021006)	six7 (ENSNFUG00015021005)	zgc:101810 (ENSNFUG00015020996)	ENSNFUG00015020993	GAL3ST3 (ENSNFUG00015020989)	GAL3ST3 (ENSNFUG00015020988)	GAL3ST3 (ENSNFUG00015020987)	GAL3ST3 (ENSNFUG00015020986)	ENSNFUG00015020985	ccs (ENSNFUG00015020981)	RBM14B (ENSNFUG00015020979)
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.b	ENSGT01030000234847.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A.nb	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.a.a.b	ENSGT01030000234847.a.a.a	ENSGT01030000234847.a.b	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A.nb	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Poecilia	ANCESTRAL SPECIES	32	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.a.a.a.a	ENSGT01030000234847.a.b	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A.nb	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
NAME_6	ANCESTRAL SPECIES	76	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01030000234847.a.a.a.a	ENSGT01030000234847.a.a.b	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968.e	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A.nb	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Sailfin molly	MODERN SPECIES	193			ADISSP (ENSPLAG00000004300)	vax2 (ENSPLAG00000004308)	tex261 (ENSPLAG00000004317)	ENSPLAG00000004335	ENSPLAG00000004340	f13a1b (ENSPLAG00000004351)	ENSPLAG00000004362	ENSPLAG00000004367	ENSPLAG00000004395	cxcl19 (ENSPLAG00000004400)	trmt10b (ENSPLAG00000004405)	intu (ENSPLAG00000004420)	ino80b (ENSPLAG00000004431)	AADAT (ENSPLAG00000004454) #22	mfap3l (ENSPLAG00000004460) #23	CLCN3 (ENSPLAG00000004514) #27	nit1 (ENSPLAG00000004546)	ENSPLAG00000004561	pfdn2 (ENSPLAG00000004570)	b4gat1 (ENSPLAG00000004576)	six7 (ENSPLAG00000004583)	zgc:101810 (ENSPLAG00000004613)	ENSPLAG00000004628	GAL3ST3 (ENSPLAG00000004642)
Amazon molly	MODERN SPECIES	399	ADISSP (ENSPFOG00000005870)	vax2 (ENSPFOG00000005831)	ENSPFOG00000005751	tex261 (ENSPFOG00000005700)	ENSPFOG00000021994	ENSPFOG00000005689	f13a1b (ENSPFOG00000005508)	ENSPFOG00000005470	ENSPFOG00000024351	ENSPFOG00000024619	ENSPFOG00000024563	cxcl19 (ENSPFOG00000005458)	trmt10b (ENSPFOG00000005390)	intu (ENSPFOG00000004945)	ino80b (ENSPFOG00000004856)	AADAT (ENSPFOG00000004638) #22	mfap3l (ENSPFOG00000004619) #23	CLCN3 (ENSPFOG00000004173) #27	nit1 (ENSPFOG00000004125)	pfdn2 (ENSPFOG00000004074)	b4gat1 (ENSPFOG00000004055)	six7 (ENSPFOG00000004034)	zgc:101810 (ENSPFOG00000003975)	ENSPFOG00000003784	GAL3ST3 (ENSPFOG00000003743)	ccs (ENSPFOG00000003644)	rbm14b (ENSPFOG00000003614)	actn3a (ENSPFOG00000021803)	prkd4 (ENSPFOG00000003603)	ENSPFOG00000003372	pacs1a (ENSPFOG00000002864)
Guppy	MODERN SPECIES	444	tex261 (ENSPREG00000003637)	ENSPREG00000003626	f13a1b (ENSPREG00000003599)	ENSPREG00000003574	ENSPREG00000003560	ENSPREG00000003544	ENSPREG00000003531	ENSPREG00000003509	ENSPREG00000003487	ENSPREG00000003470	ENSPREG00000003426	cxcl19 (ENSPREG00000003401)	trmt10b (ENSPREG00000003392)	intu (ENSPREG00000003313)	ino80b (ENSPREG00000003292)	AADAT (ENSPREG00000003261) #22	mfap3l (ENSPREG00000003232) #23	CLCN3 (ENSPREG00000003165) #27	nit1 (ENSPREG00000003126)	pfdn2 (ENSPREG00000003108)	b4gat1 (ENSPREG00000003096)	six7 (ENSPREG00000003088)	zgc:101810 (ENSPREG00000003066)	ENSPREG00000003057	GAL3ST3 (ENSPREG00000003048)	ENSPREG00000003041	ccs (ENSPREG00000003024)	rbm14b (ENSPREG00000003013)	actn3a (ENSPREG00000002956)	prkd4 (ENSPREG00000002903)	ENSPREG00000002830
Platyfish	MODERN SPECIES	5	vax2 (ENSXMAG00000001850)	ENSXMAG00000001852	tex261 (ENSXMAG00000001858)	ENSXMAG00000022443	f13a1b (ENSXMAG00000001860)	ENSXMAG00000001866	ENSXMAG00000010352	ENSXMAG00000027110	ENSXMAG00000029862	ENSXMAG00000026334	ENSXMAG00000026303	cxcl19 (ENSXMAG00000027596)	trmt10b (ENSXMAG00000001869)	intu (ENSXMAG00000001874)	ino80b (ENSXMAG00000023525)	AADAT (ENSXMAG00000001887) #22	mfap3l (ENSXMAG00000001909) #23	CLCN3 (ENSXMAG00000001910) #27	nit1 (ENSXMAG00000024605)	pfdn2 (ENSXMAG00000014699)	b4gat1 (ENSXMAG00000014705)	six7 (ENSXMAG00000022592)	zgc:101810 (ENSXMAG00000013931)	ENSXMAG00000001929	GAL3ST3 (ENSXMAG00000008379)	ccs (ENSXMAG00000008380)	rbm14b (ENSXMAG00000008390)	actn3a (ENSXMAG00000008394)	prkd4 (ENSXMAG00000008438)	ENSXMAG00000002672	pacs1a (ENSXMAG00000008449)
NAME_4	ANCESTRAL SPECIES	115	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847.b	ENSGT01030000234847.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A.ob	ENSGT00950000182923.A.nb	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677
Mummichog	MODERN SPECIES	311														intu (ENSFHEG00000021646)	ino80b (ENSFHEG00000021638)	AADAT (ENSFHEG00000021632) #22	mfap3l (ENSFHEG00000021534) #23	CLCN3 (ENSFHEG00000021518) #27	nit1 (ENSFHEG00000021476)	pfdn2 (ENSFHEG00000021462)	b4gat1 (ENSFHEG00000021432)	six7 (ENSFHEG00000021424)	ENSFHEG00000021409	zgc:101810 (ENSFHEG00000021396)	ENSFHEG00000021332	GAL3ST3 (ENSFHEG00000021326)	GAL3ST3 (ENSFHEG00000021308)	ccs (ENSFHEG00000021301)	rbm14b (ENSFHEG00000021265)	actn3a (ENSFHEG00000021252)	prkd4 (ENSFHEG00000021187)
Sheepshead minnow	MODERN SPECIES	231	ENSCVAG00000014438	tex261 (ENSCVAG00000014425)	ENSCVAG00000014402	ENSCVAG00000014382	f13a1b (ENSCVAG00000014372)	ENSCVAG00000014329	ENSCVAG00000014299	ENSCVAG00000014290	ENSCVAG00000014277	ENSCVAG00000000851	ENSCVAG00000014235	cxcl19 (ENSCVAG00000014214)	trmt10b (ENSCVAG00000014204)	intu (ENSCVAG00000014180)	ino80b (ENSCVAG00000014171)	AADAT (ENSCVAG00000014155) #22	mfap3l (ENSCVAG00000014149) #23	CLCN3 (ENSCVAG00000014141) #27	nit1 (ENSCVAG00000013997)	pfdn2 (ENSCVAG00000013958)	b4gat1 (ENSCVAG00000013942)	six7 (ENSCVAG00000013929)	zgc:101810 (ENSCVAG00000013912)	ENSCVAG00000013876	GAL3ST3 (ENSCVAG00000013822)	GAL3ST3 (ENSCVAG00000013804)	ccs (ENSCVAG00000013801)	rbm14b (ENSCVAG00000013776)	actn3a (ENSCVAG00000013761)	prkd4 (ENSCVAG00000013649)	ENSCVAG00000013603
Oryzias	ANCESTRAL SPECIES	29	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000154311.a.a.a.a.h	ENSGT01060000248964.b	ENSGT01060000248964.a	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000002305	tex261 (ENSOJAG00000002289)	ENSOJAG00000002280	ENSOJAG00000002270	f13a1b (ENSOJAG00000002168)	ENSOJAG00000002148	ENSOJAG00000002086	ENSOJAG00000019128	ENSOJAG00000019120	ENSOJAG00000019104	ENSOJAG00000019092	cxcl19 (ENSOJAG00000019083)	trmt10b (ENSOJAG00000019058)	intu (ENSOJAG00000018987)	ino80b (ENSOJAG00000018974)	AADAT (ENSOJAG00000018924) #22	mfap3l (ENSOJAG00000018917) #23	CLCN3 (ENSOJAG00000018617) #27	nit1 (ENSOJAG00000018594)	pfdn2 (ENSOJAG00000018586)	b4gat1 (ENSOJAG00000018579)	six7 (ENSOJAG00000018564)	zgc:101810 (ENSOJAG00000018489)	ENSOJAG00000018419	GAL3ST3 (ENSOJAG00000018398)	ccs (ENSOJAG00000018350)	rbm14b (ENSOJAG00000018327)	prkd4 (ENSOJAG00000017344)	ENSOJAG00000017195	pacs1a (ENSOJAG00000016750)	sf3b2 (ENSOJAG00000016538)
Indian medaka	MODERN SPECIES	19	tex261 (ENSOMEG00000016289)	ENSOMEG00000000406	ENSOMEG00000016322	f13a1b (ENSOMEG00000000410)	ENSOMEG00000016369	ENSOMEG00000016380	ENSOMEG00000016395	ENSOMEG00000016408	ENSOMEG00000016425	ENSOMEG00000016433	ENSOMEG00000016448	cxcl19 (ENSOMEG00000016466)	trmt10b (ENSOMEG00000016483)	intu (ENSOMEG00000016554)	ino80b (ENSOMEG00000016582)	AADAT (ENSOMEG00000016632) #22	mfap3l (ENSOMEG00000016642) #23	CLCN3 (ENSOMEG00000016743) #27	nit1 (ENSOMEG00000016780)	pfdn2 (ENSOMEG00000016806)	b4gat1 (ENSOMEG00000016819)	six7 (ENSOMEG00000016849)	zgc:101810 (ENSOMEG00000016898)	ENSOMEG00000016929	GAL3ST3 (ENSOMEG00000016944)	ccs (ENSOMEG00000016980)	rbm14b (ENSOMEG00000000910)	actn3a (ENSOMEG00000017089)	prkd4 (ENSOMEG00000017159)	ENSOMEG00000017223	pacs1a (ENSOMEG00000017404)
Oryzias_a	ANCESTRAL SPECIES	33	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Japanese Medaka HdrR	MODERN SPECIES	9	ADISSP (ENSORLG00000007781)	vax2 (ENSORLG00000027262)	ENSORLG00000030386	tex261 (ENSORLG00000007802)	ENSORLG00000029864	ENSORLG00000023665	f13a1b (ENSORLG00000007839)	ENSORLG00000007845	ENSORLG00000026291	ENSORLG00000024581	ENSORLG00000022239	cxcl19 (ENSORLG00000029894)	trmt10b (ENSORLG00000007862)	intu (ENSORLG00000007884)	ino80b (ENSORLG00000007893)	AADAT (ENSORLG00000007917) #22	mfap3l (ENSORLG00000007926) #23	CLCN3 (ENSORLG00000007939) #27	nit1 (ENSORLG00000007951)	pfdn2 (ENSORLG00000023430)	b4gat1 (ENSORLG00000007968)	six7 (ENSORLG00000007974)	zgc:101810 (ENSORLG00000008004)	ENSORLG00000021943	ENSORLG00000008010	GAL3ST3 (ENSORLG00000008014)	ccs (ENSORLG00000008041)	rbm14b (ENSORLG00000008051)	actn3a (ENSORLG00000008067)	prkd4 (ENSORLG00000008092)	ENSORLG00000008133
Chinese medaka	MODERN SPECIES	388	pik3c3 (ENSOSIG00000007835)	MSMP (ENSOSIG00000008066)	rgp1 (ENSOSIG00000008070)	GBA2 (ENSOSIG00000008096)	ENSOSIG00000009069	vax2 (ENSOSIG00000009079)	ENSOSIG00000009082	tex261 (ENSOSIG00000009085)	ENSOSIG00000009086	ENSOSIG00000009088	ENSOSIG00000009091	cxcl19 (ENSOSIG00000009093)	trmt10b (ENSOSIG00000009095)	intu (ENSOSIG00000009101)	ino80b (ENSOSIG00000009104)	AADAT (ENSOSIG00000009105) #22	mfap3l (ENSOSIG00000009112) #23	CLCN3 (ENSOSIG00000009120) #27	ENSOSIG00000009197	b4gat1 (ENSOSIG00000009200)	six7 (ENSOSIG00000009201)	zgc:101810 (ENSOSIG00000009203)	ENSOSIG00000009205	GAL3ST3 (ENSOSIG00000009207)	ccs (ENSOSIG00000009208)	ENSOSIG00000009210	actn3a (ENSOSIG00000009273)	prkd4 (ENSOSIG00000020364)	ENSOSIG00000020626	pacs1a (ENSOSIG00000020663)	sf3b2 (ENSOSIG00000020795)
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.`b.b	ENSGT00940000154311.a.a.a.a.g.ab	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b.a.a.b.b	ENSGT00940000154390.G.a.db.b.a.b.a	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.`b.b	ENSGT00940000154311.a.a.a.a.g.`b.a	ENSGT00940000154311.a.a.a.a.h	ENSGT00940000162996.`b.a.a	ENSGT00940000154311.a.a.a.a.g.ab	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b.a.a.b.b	ENSGT00940000154390.G.a.db.b.a.b.a	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a
Haplochromini	ANCESTRAL SPECIES	44	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.`b.b	ENSGT00940000154311.a.a.a.a.g.`b.a	ENSGT00940000154311.a.a.a.a.h	ENSGT00940000162996.`b.a.a	ENSGT00940000154311.a.a.a.a.g.ab	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00990000204491.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b.a.a.a	ENSGT00940000154390.G.a.db.b.a.a.b.a	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a
Burton s mouthbrooder	MODERN SPECIES	1023														intu (ENSHBUG00000009963)	ino80b (ENSHBUG00000009955)	AADAT (ENSHBUG00000009940) #22	mfap3l (ENSHBUG00000009897) #23	CLCN3 (ENSHBUG00000009886) #27	nit1 (ENSHBUG00000009848)	ENSHBUG00000009812	URGCP (ENSHBUG00000009805)
Haplochromini_A	ANCESTRAL SPECIES	47	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.`b.b.a	ENSGT00940000154311.a.a.a.a.g.`b.a	ENSGT00940000154311.a.a.a.a.h	ENSGT00940000162996.`b.a.a	ENSGT00940000154311.a.a.a.a.g.ab	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00990000204491.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b.a.a.a	ENSGT00940000154390.G.a.db.b.a.a.b.a	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a
Haplochromini_B	ANCESTRAL SPECIES	60	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.`b.a.a	ENSGT00940000154311.a.a.a.a.h	ENSGT00940000162996.`b.a.a	ENSGT00940000154311.a.a.a.a.g.ab	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00940000162700.e.a.a.b.a.a.d.d.b.a.b	ENSGT00730000113581.g.b	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00940000154390.G.a.db.b.a.a.a	ENSGT00940000154390.G.a.db.b.a.a.b.b	ENSGT00940000154390.G.a.db.b.a.b.a	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b
Eastern happy	MODERN SPECIES	15	ENSACLG00000013074	ENSACLG00000013093	ENSACLG00000013116	ENSACLG00000013170	ENSACLG00000013179	ENSACLG00000013204	ENSACLG00000013211	ENSACLG00000013225	cxcl19 (ENSACLG00000013671)	trmt10b (ENSACLG00000013678)	ENSACLG00000013704	ENSACLG00000013710	ENSACLG00000013723	intu (ENSACLG00000013757)	ino80b (ENSACLG00000013810)	AADAT (ENSACLG00000013828) #22	ENSACLG00000013905	mfap3l (ENSACLG00000013915) #23	CLCN3 (ENSACLG00000013939) #27	nit1 (ENSACLG00000014065)	ENSACLG00000014093	ENSACLG00000014126	ENSACLG00000014194	pfdn2 (ENSACLG00000014200)	b4gat1 (ENSACLG00000014208)	six7 (ENSACLG00000014217)	zgc:101810 (ENSACLG00000014228)	ENSACLG00000014263	GAL3ST3 (ENSACLG00000014305)	ccs (ENSACLG00000014314)	rbm14b (ENSACLG00000014355)
Zebra mbuna	MODERN SPECIES	1106	AJUBA (ENSMZEG00005020956)	mrpl52 (ENSMZEG00005020953)	mmp14a (ENSMZEG00005020950)	ENSMZEG00005020945	ENSMZEG00005020943	ENSMZEG00005020940	ENSMZEG00005020936	ENSMZEG00005020932	ENSMZEG00005020931	cxcl19 (ENSMZEG00005020929)	trmt10b (ENSMZEG00005020927)	ENSMZEG00005020916	ENSMZEG00005020914	ino80b (ENSMZEG00005020912)	intu (ENSMZEG00005020907)	AADAT (ENSMZEG00005020901) #22	mfap3l (ENSMZEG00005020899) #23	CLCN3 (ENSMZEG00005020887) #27	nit1 (ENSMZEG00005020882)	ENSMZEG00005020881	ENSMZEG00005020879	pfdn2 (ENSMZEG00005020872)	b4gat1 (ENSMZEG00005020868)	six7 (ENSMZEG00005020866)	zgc:101810 (ENSMZEG00005020862)	ENSMZEG00005020857	GAL3ST3 (ENSMZEG00005020850)	ccs (ENSMZEG00005020842)	rbm14b (ENSMZEG00005020834)	actn3a (ENSMZEG00005020827)	prkd4 (ENSMZEG00005020818)
P. nyererei	MODERN SPECIES	592		ADISSP (ENSPNYG00000021197)	vax2 (ENSPNYG00000021213)	tex261 (ENSPNYG00000021230)	ENSPNYG00000021254	f13a1b (ENSPNYG00000021267)	ENSPNYG00000021303	ENSPNYG00000021330	ENSPNYG00000021378	cxcl19 (ENSPNYG00000021388)	trmt10b (ENSPNYG00000021439)	ENSPNYG00000021519	ENSPNYG00000021529	intu (ENSPNYG00000021552)	ino80b (ENSPNYG00000021589)	AADAT (ENSPNYG00000021604) #22	mfap3l (ENSPNYG00000021628) #23	CLCN3 (ENSPNYG00000021647) #27	nit1 (ENSPNYG00000021730)
Lyretail cichlid	MODERN SPECIES	431	vax2 (ENSNBRG00000004144)	tex261 (ENSNBRG00000004130)	ENSNBRG00000004117	ENSNBRG00000004103	f13a1b (ENSNBRG00000004067)	ENSNBRG00000004048	ENSNBRG00000004017	ENSNBRG00000003912	ENSNBRG00000003877	ENSNBRG00000003850	ENSNBRG00000003813	cxcl19 (ENSNBRG00000003791)	TRMT10B (ENSNBRG00000003767)	intu (ENSNBRG00000003693)	ino80b (ENSNBRG00000003683)	AADAT (ENSNBRG00000003666) #22	CLCN3 (ENSNBRG00000003632) #27	nit1 (ENSNBRG00000003624)	ENSNBRG00000003610	ENSNBRG00000003579	pfdn2 (ENSNBRG00000003557)	b4gat1 (ENSNBRG00000003545)	six7 (ENSNBRG00000003526)	zgc:101810 (ENSNBRG00000003501)	ENSNBRG00000003454	GAL3ST3 (ENSNBRG00000003442)	ccs (ENSNBRG00000003408)	rbm14b (ENSNBRG00000003378)	actn3a (ENSNBRG00000002956)	prkd4 (ENSNBRG00000002865)	ENSNBRG00000002815
Nile tilapia	MODERN SPECIES	15	ENSONIG00000043035	ENSONIG00000037945	ENSONIG00000028594	ENSONIG00000033402	ENSONIG00000038399	ENSONIG00000027320	cxcl19 (ENSONIG00000030456)	trmt10b (ENSONIG00000036932)	ENSONIG00000041145	ENSONIG00000031198	trmt10b (ENSONIG00000012990)	ENSONIG00000012989	ENSONIG00000037443	intu (ENSONIG00000012997)	ino80b (ENSONIG00000013001)	AADAT (ENSONIG00000013005) #22	mfap3l (ENSONIG00000013007) #23	CLCN3 (ENSONIG00000013008) #27	nit1 (ENSONIG00000013015)	ENSONIG00000041831	ENSONIG00000029971	ENSONIG00000027327	ENSONIG00000034307	ENSONIG00000033898	ENSONIG00000013017	ENSONIG00000020874	pfdn2 (ENSONIG00000034079)	b4gat1 (ENSONIG00000013022)	six7 (ENSONIG00000040567)	zgc:101810 (ENSONIG00000013025)	ENSONIG00000013028
Midas cichlid	MODERN SPECIES	120														intu (ENSACIG00000021621)	ino80b (ENSACIG00000021644)	AADAT (ENSACIG00000021655) #22	mfap3l (ENSACIG00000021675) #23	CLCN3 (ENSACIG00000021686) #27	nit1 (ENSACIG00000021707)	URGCP (ENSACIG00000021733)	pfdn2 (ENSACIG00000000182)	b4gat1 (ENSACIG00000000268)	six7 (ENSACIG00000000285)	zgc:101810 (ENSACIG00000000300)	ENSACIG00000000320	GAL3ST3 (ENSACIG00000000351)	ccs (ENSACIG00000000359)	rbm14b (ENSACIG00000000381)	actn3a (ENSACIG00000000398)	prkd4 (ENSACIG00000000474)	ENSACIG00000000529
Pomacentridae	ANCESTRAL SPECIES	37	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.x	ENSGT00940000154311.a.a.a.a.g.w.a	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Pomacentridae_A	ANCESTRAL SPECIES	43	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.x	ENSGT00940000154311.a.a.a.a.g.w.a	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Amphiprion	ANCESTRAL SPECIES	50	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g.x	ENSGT00940000154311.a.a.a.a.g.w.a	ENSGT01030000234847	ENSGT00940000168006.e	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Orange clownfish	MODERN SPECIES	15	GBA2 (ENSAPEG00000004004)	ADISSP (ENSAPEG00000003982)	vax2 (ENSAPEG00000003970)	ENSAPEG00000003937	tex261 (ENSAPEG00000003878)	ENSAPEG00000003858	ENSAPEG00000003815	f13a1b (ENSAPEG00000003744)	ENSAPEG00000003728	ENSAPEG00000003700	ENSAPEG00000003684	cxcl19 (ENSAPEG00000003679)	trmt10b (ENSAPEG00000003675)	intu (ENSAPEG00000003612)	ino80b (ENSAPEG00000003582)	AADAT (ENSAPEG00000003564) #22	mfap3l (ENSAPEG00000003546) #23	CLCN3 (ENSAPEG00000003440) #27	nit1 (ENSAPEG00000003418)	pfdn2 (ENSAPEG00000003409)	b4gat1 (ENSAPEG00000003401)	six7 (ENSAPEG00000003377)	zgc:101810 (ENSAPEG00000003352)	ENSAPEG00000003295	GAL3ST3 (ENSAPEG00000003242)	ccs (ENSAPEG00000003203)	rbm14b (ENSAPEG00000003161)	actn3a (ENSAPEG00000003098)	prkd4 (ENSAPEG00000003015)	ENSAPEG00000002920	pacs1a (ENSAPEG00000002874)
Clown anemonefish	MODERN SPECIES	1599														intu (ENSAOCG00000019137)	ino80b (ENSAOCG00000019122)	AADAT (ENSAOCG00000019102) #22	mfap3l (ENSAOCG00000019054) #23	CLCN3 (ENSAOCG00000019023) #27	nit1 (ENSAOCG00000018937)	pfdn2 (ENSAOCG00000018923)	b4gat1 (ENSAOCG00000018900)	six7 (ENSAOCG00000002782)	zgc:101810 (ENSAOCG00000018874)	QRICH1 (ENSAOCG00000018842)	ENSAOCG00000018778	ENSAOCG00000018751	prickle2a (ENSAOCG00000018729)	rho (ENSAOCG00000018646)	MAGI1 (ENSAOCG00000018032)	ren (ENSAOCG00000017916)	csf1b (ENSAOCG00000017881)
Spiny chromis	MODERN SPECIES	1778										ENSAPOG00000007412	ENSAPOG00000007397	cxcl19 (ENSAPOG00000007385)	trmt10b (ENSAPOG00000007362)	intu (ENSAPOG00000007291)	ino80b (ENSAPOG00000007238)	AADAT (ENSAPOG00000007224) #22	mfap3l (ENSAPOG00000007169) #23
Bicolor damselfish	MODERN SPECIES	689			ENSSPAG00000004885	tex261 (ENSSPAG00000004870)	ENSSPAG00000004861	ENSSPAG00000004852	f13a1b (ENSSPAG00000004803)	ENSSPAG00000004785	ENSSPAG00000004771	ENSSPAG00000004756	ENSSPAG00000004718	cxcl19 (ENSSPAG00000004700)	trmt10b (ENSSPAG00000004689)	intu (ENSSPAG00000004613)	ino80b (ENSSPAG00000004589)	AADAT (ENSSPAG00000004546) #22	mfap3l (ENSSPAG00000004535) #23	CLCN3 (ENSSPAG00000004430) #27	nit1 (ENSSPAG00000004408)	pfdn2 (ENSSPAG00000004387)	b4gat1 (ENSSPAG00000004382)	six7 (ENSSPAG00000004375)	zgc:101810 (ENSSPAG00000004347)	zgc:101810 (ENSSPAG00000004321)	ENSSPAG00000004299	GAL3ST3 (ENSSPAG00000004270)	ccs (ENSSPAG00000004236)	rbm14b (ENSSPAG00000004231)	actn3a (ENSSPAG00000004192)
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00980000198711	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Climbing perch	MODERN SPECIES	9	ENSATEG00000002520	tex261 (ENSATEG00000002532)	ENSATEG00000026669	ENSATEG00000002569	f13a1b (ENSATEG00000002578)	ENSATEG00000026289	ENSATEG00000002592	ENSATEG00000002603	ENSATEG00000002614	cxcl19 (ENSATEG00000002666)	ENSATEG00000028518	ENSATEG00000002643	ENSATEG00000002674	intu (ENSATEG00000002680)	ino80b (ENSATEG00000002787)	AADAT (ENSATEG00000002794) #22	mfap3l (ENSATEG00000029150) #23	CLCN3 (ENSATEG00000002808) #27	nit1 (ENSATEG00000028512)	pfdn2 (ENSATEG00000002845)	b4gat1 (ENSATEG00000002878)	six7 (ENSATEG00000002891)	zgc:101810 (ENSATEG00000002917)	ENSATEG00000002961	ENSATEG00000029953	ccs (ENSATEG00000002992)	ENSATEG00000003034	actn3b (ENSATEG00000003073)	prkd4 (ENSATEG00000003186)	ENSATEG00000003311	ENSATEG00000003380
Siamese fighting fish	MODERN SPECIES	10	rgp1 (ENSBSLG00000007223)	GBA2 (ENSBSLG00000006821)	ADISSP (ENSBSLG00000006428)	vax2 (ENSBSLG00000006343)	ENSBSLG00000006299	tex261 (ENSBSLG00000006004)	ENSBSLG00000006001	ENSBSLG00000005998	f13a1b (ENSBSLG00000005708)	ENSBSLG00000005544	ENSBSLG00000005445	cxcl19 (ENSBSLG00000005414)	trmt10b (ENSBSLG00000005324)	intu (ENSBSLG00000013945)	ino80b (ENSBSLG00000013922)	AADAT (ENSBSLG00000013883) #22	mfap3l (ENSBSLG00000013873) #23	CLCN3 (ENSBSLG00000013543) #27	nit1 (ENSBSLG00000013490)	ENSBSLG00000013476	pfdn2 (ENSBSLG00000013427)	b4gat1 (ENSBSLG00000013412)	six7 (ENSBSLG00000013396)	zgc:101810 (ENSBSLG00000013360)	ENSBSLG00000013159	GAL3ST3 (ENSBSLG00000012628)	ccs (ENSBSLG00000012608)	rbm14b (ENSBSLG00000012600)	actn3a (ENSBSLG00000010888)	prkd4 (ENSBSLG00000009504)	ENSBSLG00000009355
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000014978	ENSMAMG00000014956	vax2 (ENSMAMG00000014936)	ENSMAMG00000014917	tex261 (ENSMAMG00000027899)	ENSMAMG00000026998	ENSMAMG00000014879	f13a1b (ENSMAMG00000014838)	ENSMAMG00000014821	ENSMAMG00000014810	cxcl19 (ENSMAMG00000028275)	ENSMAMG00000014779	intu (ENSMAMG00000014736)	ino80b (ENSMAMG00000014700)	ENSMAMG00000025906	AADAT (ENSMAMG00000014680) #22	mfap3l (ENSMAMG00000014672) #23	CLCN3 (ENSMAMG00000014582) #27	nit1 (ENSMAMG00000014564)	pfdn2 (ENSMAMG00000014535)	b4gat1 (ENSMAMG00000014519)	six7 (ENSMAMG00000014514)	zgc:101810 (ENSMAMG00000014497)	ENSMAMG00000014447	ENSMAMG00000025456	ENSMAMG00000028192	ENSMAMG00000014394	ENSMAMG00000014306	prkd4 (ENSMAMG00000014218)	ENSMAMG00000014167	ENSMAMG00000014119
Carangaria	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00980000198711	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Tongue sole	MODERN SPECIES		pik3c3 (ENSCSEG00000004096)	ENSCSEG00000004082	rgp1 (ENSCSEG00000004067)	GBA2 (ENSCSEG00000004048)	ADISSP (ENSCSEG00000004041)	vax2 (ENSCSEG00000004034)	ENSCSEG00000004022	tex261 (ENSCSEG00000004018)	ENSCSEG00000004010	ENSCSEG00000004008	f13a1b (ENSCSEG00000003965)	trmt10b (ENSCSEG00000003957)	cxcl19 (ENSCSEG00000003959)	intu (ENSCSEG00000003941)	ino80b (ENSCSEG00000003937)	AADAT (ENSCSEG00000003928) #22	mfap3l (ENSCSEG00000003927) #23	ENSCSEG00000003916	vrk1 (ENSCSEG00000003911)	BCL11B (ENSCSEG00000003909)	ENSCSEG00000003903	GABRG1 (ENSCSEG00000003899)	ENSCSEG00000003895	HHIPL1 (ENSCSEG00000003884)	setd3 (ENSCSEG00000003877)	rrh (ENSCSEG00000002964)	enpep (ENSCSEG00000002955)	fam241a (ENSCSEG00000002953)	lamtor3 (ENSCSEG00000002951)	pop4 (ENSCSEG00000002946)	commd8 (ENSCSEG00000002927)
Turbot	DUPLICATION
Turbot	MODERN SPECIES	11	pik3c3 (ENSSMAG00000007434)	ENSSMAG00000007544	rgp1 (ENSSMAG00000007552)	ENSSMAG00000007566	ENSSMAG00000007602	vax2 (ENSSMAG00000007640)	ENSSMAG00000007667	tex261 (ENSSMAG00000028099)	ENSSMAG00000007723	f13a1b (ENSSMAG00000007732)	ENSSMAG00000007826	cxcl19 (ENSSMAG00000037348)	ENSSMAG00000031808	intu (ENSSMAG00000013969)	ino80b (ENSSMAG00000014039)	ENSSMAG00000014106 #22	ENSSMAG00000026942 #22	mfap3l (ENSSMAG00000034924) #23	ENSSMAG00000025915	ENSSMAG00000004672 #27	nit1 (ENSSMAG00000004615)	pfdn2 (ENSSMAG00000034386)	b4gat1 (ENSSMAG00000004639)	six7 (ENSSMAG00000004630)	zgc:101810 (ENSSMAG00000004590)	ENSSMAG00000026342	ENSSMAG00000004578	ENSSMAG00000023653	ENSSMAG00000004544	ENSSMAG00000004522	ENSSMAG00000004446
Turbot	MODERN SPECIES	11	ENSSMAG00000007544	rgp1 (ENSSMAG00000007552)	ENSSMAG00000007566	ENSSMAG00000007602	vax2 (ENSSMAG00000007640)	ENSSMAG00000007667	tex261 (ENSSMAG00000028099)	ENSSMAG00000007723	f13a1b (ENSSMAG00000007732)	ENSSMAG00000007826	cxcl19 (ENSSMAG00000037348)	ENSSMAG00000031808	intu (ENSSMAG00000013969)	ino80b (ENSSMAG00000014039)	ENSSMAG00000014106 #22	ENSSMAG00000026942 #22	mfap3l (ENSSMAG00000034924) #23	ENSSMAG00000025915	ENSSMAG00000004672 #27	nit1 (ENSSMAG00000004615)	pfdn2 (ENSSMAG00000034386)	b4gat1 (ENSSMAG00000004639)	six7 (ENSSMAG00000004630)	zgc:101810 (ENSSMAG00000004590)	ENSSMAG00000026342	ENSSMAG00000004578	ENSSMAG00000023653	ENSSMAG00000004544	ENSSMAG00000004522	ENSSMAG00000004446	prkd4 (ENSSMAG00000004260)
Carangaria_A	ANCESTRAL SPECIES	26	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Seriola	ANCESTRAL SPECIES	24	ENSGT00980000198711	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Yellowtail amberjack	MODERN SPECIES	3268	ENSSLDG00000005573	rgp1 (ENSSLDG00000005606)	GBA2 (ENSSLDG00000005663)	ADISSP (ENSSLDG00000005777)	vax2 (ENSSLDG00000005819)	tex261 (ENSSLDG00000005833)	ENSSLDG00000005863	ENSSLDG00000005878	f13a1b (ENSSLDG00000005907)	ENSSLDG00000005960	ENSSLDG00000005977	cxcl19 (ENSSLDG00000006000)	trmt10b (ENSSLDG00000006011)	intu (ENSSLDG00000006081)	ino80b (ENSSLDG00000006153)	AADAT (ENSSLDG00000006169) #22	mfap3l (ENSSLDG00000006202) #23	CLCN3 (ENSSLDG00000006233) #27	nit1 (ENSSLDG00000006281)	pfdn2 (ENSSLDG00000006298)	b4gat1 (ENSSLDG00000006316)	six7 (ENSSLDG00000006326)	zgc:101810 (ENSSLDG00000006345)	ENSSLDG00000006388	GAL3ST3 (ENSSLDG00000006436)	ccs (ENSSLDG00000006446)	rbm14b (ENSSLDG00000006472)	actn3a (ENSSLDG00000006492)	prkd4 (ENSSLDG00000006554)	ENSSLDG00000006593	pacs1a (ENSSLDG00000006649)
Greater amberjack	MODERN SPECIES	153	rgp1 (ENSSDUG00000007348)	GBA2 (ENSSDUG00000007396)	ADISSP (ENSSDUG00000007447)	vax2 (ENSSDUG00000007479)	tex261 (ENSSDUG00000007494)	ENSSDUG00000007520	ENSSDUG00000007528	f13a1b (ENSSDUG00000007539)	ENSSDUG00000007576	ENSSDUG00000007589	cxcl19 (ENSSDUG00000007611)	ENSSDUG00000007631	trmt10b (ENSSDUG00000007639)	intu (ENSSDUG00000007689)	ino80b (ENSSDUG00000007725)	AADAT (ENSSDUG00000007737) #22	mfap3l (ENSSDUG00000007763) #23	CLCN3 (ENSSDUG00000007793) #27	nit1 (ENSSDUG00000007844)	pfdn2 (ENSSDUG00000007866)	b4gat1 (ENSSDUG00000007878)	six7 (ENSSDUG00000007885)	zgc:101810 (ENSSDUG00000007897)	ENSSDUG00000007919	GAL3ST3 (ENSSDUG00000007937)	ccs (ENSSDUG00000007950)	rbm14b (ENSSDUG00000007975)	actn3a (ENSSDUG00000007995)	prkd4 (ENSSDUG00000008079)	ENSSDUG00000008130	pacs1a (ENSSDUG00000008434)
Barramundi perch	MODERN SPECIES	371	ADISSP (ENSLCAG00010009856)	vax2 (ENSLCAG00010009857)	ENSLCAG00010009860	tex261 (ENSLCAG00010009866)	ENSLCAG00010009870	ENSLCAG00010009873	f13a1b (ENSLCAG00010009897)	ENSLCAG00010009997	ENSLCAG00010010002	ENSLCAG00010010008	ENSLCAG00010010013	cxcl19 (ENSLCAG00010010021)	trmt10b (ENSLCAG00010010029)	intu (ENSLCAG00010010036)	ENSLCAG00010010042	AADAT (ENSLCAG00010010070) #22	mfap3l (ENSLCAG00010010095) #23
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Tetraodontidae	ANCESTRAL SPECIES	89														ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00940000166677	ENSGT00950000183209.a	ENSGT00390000006734.a	ENSGT00940000159147.b.b
Tetraodon	MODERN SPECIES	26	nelfa (ENSTNIG00000019050)	faah2b (ENSTNIG00000019051)	TESK1 (ENSTNIG00000019052)	pik3c3 (ENSTNIG00000019053)	rgp1 (ENSTNIG00000019054)	GBA2 (ENSTNIG00000019055)	vax2 (ENSTNIG00000019056)	ENSTNIG00000003542	tex261 (ENSTNIG00000003543)	ENSTNIG00000003253	f13a1b (ENSTNIG00000003252)	cxcl19 (ENSTNIG00000003251)	trmt10b (ENSTNIG00000003250)	intu (ENSTNIG00000003249)	ino80b (ENSTNIG00000003248)	AADAT (ENSTNIG00000003247) #22	mfap3l (ENSTNIG00000003246) #23	CLCN3 (ENSTNIG00000003654) #27	nit1 (ENSTNIG00000001041)	pfdn2 (ENSTNIG00000003655)	b4gat1 (ENSTNIG00000000945)	six7 (ENSTNIG00000003656)	zgc:101810 (ENSTNIG00000003657)	ENSTNIG00000003658	GAL3ST3 (ENSTNIG00000006842)	ccs (ENSTNIG00000006843)	rbm14b (ENSTNIG00000006844)	actn3a (ENSTNIG00000006845)	prkd4 (ENSTNIG00000006846)	ENSTNIG00000006847	ENSTNIG00000000206
Fugu	MODERN SPECIES	20	ENSTRUG00000024404	rgp1 (ENSTRUG00000018110)	gba2 (ENSTRUG00000018098)	ENSTRUG00000026676	trmt10b (ENSTRUG00000018087)	cxcl19 (ENSTRUG00000026554)	f13a1b (ENSTRUG00000018071)	ENSTRUG00000018070	ENSTRUG00000032228	tex261 (ENSTRUG00000022006)	ENSTRUG00000021307	vax2 (ENSTRUG00000018062)	ADISSP (ENSTRUG00000021291)	intu (ENSTRUG00000001916)	ino80b (ENSTRUG00000002278)	AADAT (ENSTRUG00000002417) #22	mfap3l (ENSTRUG00000030561) #23	CLCN3 (ENSTRUG00000003377) #27	nit1 (ENSTRUG00000004359)	pfdn2 (ENSTRUG00000004520)	b4gat1 (ENSTRUG00000024415)	six7 (ENSTRUG00000004681)	zgc:101810 (ENSTRUG00000004812)	GAL3ST3 (ENSTRUG00000005535)	ENSTRUG00000033331	GAL3ST3 (ENSTRUG00000030175)	ccs (ENSTRUG00000005597)	rbm14b (ENSTRUG00000005716)	actn3a (ENSTRUG00000005731)	ENSTRUG00000006750	pacs1a (ENSTRUG00000007211)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Ballan wrasse	MODERN SPECIES	144	TESK1 (ENSLBEG00000000167)	pik3c3 (ENSLBEG00000000099)	MSMP (ENSLBEG00000000083)	rgp1 (ENSLBEG00000000066)	GBA2 (ENSLBEG00000000050)	ADISSP (ENSLBEG00000000045)	vax2 (ENSLBEG00000000036)	ENSLBEG00000028203	tex261 (ENSLBEG00000028188)	ENSLBEG00000028179	f13a1b (ENSLBEG00000028167)	cxcl19 (ENSLBEG00000028131)	trmt10b (ENSLBEG00000028123)	intu (ENSLBEG00000028076)	ino80b (ENSLBEG00000028067)	AADAT (ENSLBEG00000028044) #22	mfap3l (ENSLBEG00000028036) #23	CLCN3 (ENSLBEG00000028024) #27	nit1 (ENSLBEG00000028013)	pfdn2 (ENSLBEG00000028004)	b4gat1 (ENSLBEG00000027994)	six7 (ENSLBEG00000027988)	zgc:101810 (ENSLBEG00000027977)	ENSLBEG00000027965	GAL3ST3 (ENSLBEG00000027959)	ccs (ENSLBEG00000027942)	rbm14b (ENSLBEG00000027934)	actn3a (ENSLBEG00000027897)	prkd4 (ENSLBEG00000027849)	ENSLBEG00000027828	pacs1a (ENSLBEG00000027801)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00980000198711	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
European seabass	MODERN SPECIES	16	ENSDLAG00005008415	pik3c3 (ENSDLAG00005008450)	ENSDLAG00005027606	rgp1 (ENSDLAG00005009522)	ENSDLAG00005009554	ENSDLAG00005010071	vax2 (ENSDLAG00005032371)	ENSDLAG00005029724	ENSDLAG00005010120	ENSDLAG00005028301	f13a1b (ENSDLAG00005010178)	ENSDLAG00005018863	cxcl19 (ENSDLAG00005011963)	ENSDLAG00005011974	intu (ENSDLAG00005011992)	ENSDLAG00005012012 #22	ino80b (ENSDLAG00005033649)	mfap3l (ENSDLAG00005030016) #23	ENSDLAG00005012139 #27	nit1 (ENSDLAG00005032561)	pfdn2 (ENSDLAG00005012707)	b4gat1 (ENSDLAG00005026963)	six7 (ENSDLAG00005012732)	zgc:101810 (ENSDLAG00005012752)	ENSDLAG00005012805	ENSDLAG00005012832	ENSDLAG00005012857	ENSDLAG00005033942	ENSDLAG00005015267	prkd4 (ENSDLAG00005014689)	ENSDLAG00005015144
Large yellow croaker	MODERN SPECIES		rgp1 (ENSLCRG00005004075)	GBA2 (ENSLCRG00005004087)	ADISSP (ENSLCRG00005004121)	vax2 (ENSLCRG00005004122)	ENSLCRG00005004123	tex261 (ENSLCRG00005004125)	ENSLCRG00005004129	ENSLCRG00005004130	f13a1b (ENSLCRG00005004141)	ENSLCRG00005004210	ENSLCRG00005004239	cxcl19 (ENSLCRG00005004251)	trmt10b (ENSLCRG00005004255)	ENSLCRG00005004256	intu (ENSLCRG00005004258)	AADAT (ENSLCRG00005004263) #22	ino80b (ENSLCRG00005004275)	mfap3l (ENSLCRG00005004277) #23	ENSLCRG00005004281	ENSLCRG00005004283	ENSLCRG00005004284	DOCK3 (ENSLCRG00005004429)	DCAF1 (ENSLCRG00005012647)	VPS52 (ENSLCRG00005013729)	ENSLCRG00005013733	ENSLCRG00005013734	glra1 (ENSLCRG00005013737)	g3bp1 (ENSLCRG00005013757)	sparc (ENSLCRG00005013762)	atox1 (ENSLCRG00005013942)	SLC36A1 (ENSLCRG00005013944)
Gilthead seabream	MODERN SPECIES	1	GBA2 (ENSSAUG00010002358)	ADISSP (ENSSAUG00010002317)	vax2 (ENSSAUG00010002315)	ENSSAUG00010014227	tex261 (ENSSAUG00010014225)	ENSSAUG00010014223	ENSSAUG00010014219	ENSSAUG00010014218	f13a1b (ENSSAUG00010014021)	ENSSAUG00010013979	ENSSAUG00010013960	cxcl19 (ENSSAUG00010013949)	trmt10b (ENSSAUG00010013945)	intu (ENSSAUG00010013919)	ino80b (ENSSAUG00010013910)	AADAT (ENSSAUG00010013886) #22	mfap3l (ENSSAUG00010013878) #23	CLCN3 (ENSSAUG00010011405) #27	nit1 (ENSSAUG00010011380)	nit1 (ENSSAUG00010011379)	pfdn2 (ENSSAUG00010011378)	b4gat1 (ENSSAUG00010011377)	six7 (ENSSAUG00010011375)	zgc:101810 (ENSSAUG00010011368)	ENSSAUG00010011364	ccs (ENSSAUG00010011360)	rbm14b (ENSSAUG00010011358)	GAL3ST3 (ENSSAUG00010011356)	actn3a (ENSSAUG00010011208)	prkd4 (ENSSAUG00010010308)	ENSSAUG00010010230
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a.f	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000156943	ENSGT00980000198711	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00980000198769	ENSGT00390000010888	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01030000234847	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a.f	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Lumpfish	MODERN SPECIES	9	ENSCLMG00005013709	ENSCLMG00005013708	ENSCLMG00005013707	ADISSP (ENSCLMG00005013706)	vax2 (ENSCLMG00005013705)	ENSCLMG00005013704	tex261 (ENSCLMG00005013703)	ENSCLMG00005013702	f13a1b (ENSCLMG00005013561)	ENSCLMG00005013558	ENSCLMG00005013557	cxcl19 (ENSCLMG00005013555)	trmt10b (ENSCLMG00005013554)	intu (ENSCLMG00005013540)	ino80b (ENSCLMG00005013539)	AADAT (ENSCLMG00005013524) #22	mfap3l (ENSCLMG00005013521) #23	CLCN3 (ENSCLMG00005013460) #27	nit1 (ENSCLMG00005013452)	pfdn2 (ENSCLMG00005013449)	b4gat1 (ENSCLMG00005013447)	six7 (ENSCLMG00005013446)	zgc:101810 (ENSCLMG00005013422)	ENSCLMG00005013419	GAL3ST3 (ENSCLMG00005013418)	ccs (ENSCLMG00005013416)	rbm14b (ENSCLMG00005013414)	actn3a (ENSCLMG00005013079)	prkd4 (ENSCLMG00005013076)	ENSCLMG00005012692	pacs1a (ENSCLMG00005012684)
Stickleback	MODERN SPECIES	7	TESK1 (ENSGACG00000019117)	pik3c3 (ENSGACG00000019111)	rgp1 (ENSGACG00000019101)	GBA2 (ENSGACG00000019099)	ADISSP (ENSGACG00000019096)	vax2 (ENSGACG00000019094)	tex261 (ENSGACG00000019089)	ENSGACG00000019088	f13a1b (ENSGACG00000019085)	ENSGACG00000019083	ENSGACG00000019081	cxcl19 (ENSGACG00000019078)	trmt10b (ENSGACG00000019076)	intu (ENSGACG00000019072)	ino80b (ENSGACG00000019069)	AADAT (ENSGACG00000019058) #22	mfap3l (ENSGACG00000019057) #23	ENSGACG00000019055	ENSGACG00000019052	ENSGACG00000019051	ENSGACG00000019050	CLCN3 (ENSGACG00000019049) #27	nit1 (ENSGACG00000019044)	pfdn2 (ENSGACG00000019042)	b4gat1 (ENSGACG00000019040)	six7 (ENSGACG00000019038)	zgc:101810 (ENSGACG00000019031)	GAL3ST3 (ENSGACG00000019030)	ccs (ENSGACG00000019029)	rbm14b (ENSGACG00000019028)	actn3a (ENSGACG00000019023)
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c	ENSGT00940000154311.a.a.a.a.g	ENSGT01060000248964	ENSGT00940000168006	ENSGT00530000063169.b.a	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a.f	ENSGT00940000153968.a.b.b.b	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a
Pike perch	MODERN SPECIES	19	CKM (ENSSLUG00000012056)	MARK4 (ENSSLUG00000011559)	ENSSLUG00000011525	ENSSLUG00000011521	ENSSLUG00000011511	ENSSLUG00000011509	SPTBN4 (ENSSLUG00000005732)	blvrb (ENSSLUG00000005261)	ENSSLUG00000005255	kcnk6 (ENSSLUG00000005248)	ENSSLUG00000005229	cxcl19 (ENSSLUG00000005209)	trmt10b (ENSSLUG00000014702)	intu (ENSSLUG00000014679)	ino80b (ENSSLUG00000014672)	AADAT (ENSSLUG00000014589) #22	mfap3l (ENSSLUG00000014560) #23	CLCN3 (ENSSLUG00000013368) #27	nit1 (ENSSLUG00000013300)	pfdn2 (ENSSLUG00000013295)	b4gat1 (ENSSLUG00000013289)	six7 (ENSSLUG00000013280)	zgc:101810 (ENSSLUG00000013269)	ENSSLUG00000013261	GAL3ST3 (ENSSLUG00000013258)	ccs (ENSSLUG00000013255)	rbm14b (ENSSLUG00000013253)	actn3a (ENSSLUG00000006804)	prkd4 (ENSSLUG00000006448)	ENSSLUG00000006413	pacs1a (ENSSLUG00000006117)
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000013667	rgp1 (ENSCGOG00000013676)	GBA2 (ENSCGOG00000013689)	ADISSP (ENSCGOG00000013785)	vax2 (ENSCGOG00000013786)	tex261 (ENSCGOG00000013788)	ENSCGOG00000013804	f13a1b (ENSCGOG00000013808)	ENSCGOG00000013850	ENSCGOG00000013852	ENSCGOG00000013853	ENSCGOG00000013855	cxcl19 (ENSCGOG00000013856)	intu (ENSCGOG00000013863)	ino80b (ENSCGOG00000013872)	AADAT (ENSCGOG00000013874) #22	mfap3l (ENSCGOG00000014000) #23	CLCN3 (ENSCGOG00000014097) #27	nit1 (ENSCGOG00000017135)	pfdn2 (ENSCGOG00000017139)	b4gat1 (ENSCGOG00000017150)	six7 (ENSCGOG00000017151)	zgc:101810 (ENSCGOG00000017156)	ENSCGOG00000017265	GAL3ST3 (ENSCGOG00000017275)	CCS (ENSCGOG00000017281)	ENSCGOG00000017302	CCS (ENSCGOG00000017304)	rbm14b (ENSCGOG00000017305)	actn3a (ENSCGOG00000017330)	prkd4 (ENSCGOG00000018717)
Cod	MODERN SPECIES	8	ENSGMOG00000028352	ENSGMOG00000025698	ENSGMOG00000029118	ENSGMOG00000031799	ENSGMOG00000036283	ENSGMOG00000030378	ENSGMOG00000026181	agfg2 (ENSGMOG00000016834)	ENSGMOG00000036442	si:ch73-335l21.4 (ENSGMOG00000014164)	si:ch73-335l21.2 (ENSGMOG00000036358)	dvl2 (ENSGMOG00000014125)	acadvl (ENSGMOG00000014084)	intu (ENSGMOG00000005821)	ino80b (ENSGMOG00000005805)	ENSGMOG00000005784 #22	mfap3l (ENSGMOG00000005769) #23	actn3b (ENSGMOG00000009617)	ENSGMOG00000027696	ccs (ENSGMOG00000009635)	ENSGMOG00000009644	ENSGMOG00000023814	zgc:101810 (ENSGMOG00000009710)	six7 (ENSGMOG00000009723)	b4gat1 (ENSGMOG00000009731)	nit1 (ENSGMOG00000009736)	pfdn2 (ENSGMOG00000024138)	ENSGMOG00000009747 #27	ENSGMOG00000026430	ENSGMOG00000035973	ENSGMOG00000032768
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00390000005342	ENSGT00940000162502.b	ENSGT00940000157807.g.a	ENSGT00940000156943	ENSGT00980000198711	ENSGT00940000154371.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g	ENSGT00940000161043	ENSGT00510000048167.b.a	ENSGT00390000010888	ENSGT00940000168006	ENSGT00390000001301	ENSGT00390000001754	ENSGT00390000004594 #22	ENSGT00390000011576.a #23	ENSGT00940000153763.b #27	ENSGT00550000075099	ENSGT00390000009272	ENSGT00940000157679	ENSGT00940000165710	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a	ENSGT00950000182923.A	ENSGT00940000159785	ENSGT00940000157436.a	ENSGT00940000153968.a.b.b.b.o	ENSGT00950000183024.a.a.a	ENSGT00940000166677	ENSGT00950000183209.a.a.b
Northern pike	MODERN SPECIES	23	ENSELUG00000029922	ADISSP (ENSELUG00000004200)	vax2 (ENSELUG00000004216)	ENSELUG00000004242	tex261 (ENSELUG00000004257)	ENSELUG00000004273	ENSELUG00000004290	f13a1b (ENSELUG00000004312)	ENSELUG00000027978	cxcl19 (ENSELUG00000004332)	ENSELUG00000030274	ENSELUG00000026587	trmt10b (ENSELUG00000004357)	intu (ENSELUG00000004397)	ino80b (ENSELUG00000034360)	AADAT (ENSELUG00000004433) #22	mfap3l (ENSELUG00000004442) #23	CLCN3 (ENSELUG00000004494) #27	nit1 (ENSELUG00000004530)	pfdn2 (ENSELUG00000004556)	b4gat1 (ENSELUG00000004568)	six7 (ENSELUG00000004577)	zgc:101810 (ENSELUG00000004600)	ENSELUG00000004630	GAL3ST3 (ENSELUG00000027607)	ccs (ENSELUG00000004661)	rbm14b (ENSELUG00000004690)	actn3a (ENSELUG00000004716)	ENSELUG00000004771	ENSELUG00000004789	ENSELUG00000004802
Salmoninae	ANCESTRAL SPECIES	366					ENSGT00390000008711.g.b	ENSGT00940000161043.e	ENSGT00510000048167.b.a.d	ENSGT00390000010888.g	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c.j	ENSGT00970000196824.a.b	ENSGT00940000168006	ENSGT00390000001301.g	ENSGT00390000001754.f	ENSGT00390000004594 #22	ENSGT00390000011576.a.i #23	ENSGT00940000153763.b.c #27	ENSGT00390000009272.y	ENSGT00940000157679.d	ENSGT00940000165710.e	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a.g	ENSGT00950000182923.A.ib.b.a	ENSGT00940000159785.h	ENSGT00940000157436.a.d.b	ENSGT00940000153968.a.b.b.b.o.b	ENSGT01100000263538.A.a.a.a.l.a	ENSGT00950000182933.C.j	ENSGT00940000158350.d	ENSGT00390000012496.b.h.a
Huchen	MODERN SPECIES	526														intu (ENSHHUG00000039133)	ino80b (ENSHHUG00000039144)	AADAT (ENSHHUG00000039151) #22	mfap3l (ENSHHUG00000039162) #23	CLCN3 (ENSHHUG00000039184) #27	pfdn2 (ENSHHUG00000039282)	six7 (ENSHHUG00000039301)	zgc:101810 (ENSHHUG00000039304)	ENSHHUG00000039359	GAL3ST3 (ENSHHUG00000039375)	CCS (ENSHHUG00000039383)	ENSHHUG00000039391	rbm14b (ENSHHUG00000039395)	actn3a (ENSHHUG00000039427)	MYADM (ENSHHUG00000039775)	vangl2 (ENSHHUG00000039817)	ENSHHUG00000039836	ENSHHUG00000039851
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000162502.b	ENSGT00940000157807.g.a.c	ENSGT00940000156943.e	ENSGT00980000198711.a	ENSGT00390000008711.g.b	ENSGT00940000161043.e	ENSGT00510000048167.b.a.d	ENSGT00390000010888.g	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c.j	ENSGT00970000196824.a.b	ENSGT00990000213049	ENSGT00390000001301.g	ENSGT00390000001754.f	ENSGT00390000004594.u.a #22	ENSGT00390000011576.a.i #23	ENSGT00940000153763.b.c #27	ENSGT00390000009272.y	ENSGT00940000157679.d	ENSGT00940000165710.e	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a.g	ENSGT00950000182923.A.ib.b.a	ENSGT00940000159785.h	ENSGT00940000157436.a.d.b	ENSGT00940000153968.a.b.b.b.o.b	ENSGT01030000234540.C.i.a.a.a.a	ENSGT01100000263489.a.a.b.b.f.c.a.a.b.b.a.b.a.a.a.a.a.b.a.b	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.a.a	ENSGT00940000177672
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000162502.b	ENSGT00940000157807.g.a.c	ENSGT00940000156943.e	ENSGT00980000198711.a	ENSGT00390000008711.g.b	ENSGT00940000161043.e	ENSGT00510000048167.b.a.d	ENSGT00390000010888.g	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c.j	ENSGT00970000196824.a.b	ENSGT00990000213049	ENSGT00390000001301.g	ENSGT00390000001754.f	ENSGT00390000004594.u.a #22	ENSGT00390000011576.a.i #23	ENSGT00940000153763.b.c #27	ENSGT00390000009272.y	ENSGT00940000157679.d	ENSGT00940000165710.e	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a.g	ENSGT00950000182923.A.ib.b.a	ENSGT00940000159785.h	ENSGT00940000157436.a.d.b	ENSGT00940000153968.a.b.b.b.o.b	ENSGT00950000182933.C.j.f	ENSGT00940000158350.d	ENSGT00390000012496.b.h.a	ENSGT01030000234994.j
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000162502.b	ENSGT00940000157807.g.a.c	ENSGT00940000156943.e	ENSGT00980000198711.a	ENSGT00390000008711.g.b	ENSGT00940000161043.e	ENSGT00510000048167.b.a.d	ENSGT00390000010888.g	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c.j	ENSGT00970000196824.a.b	ENSGT00990000213049	ENSGT00390000001301.g	ENSGT00390000001754.f	ENSGT00390000004594.u.a #22	ENSGT00390000011576.a.i #23	ENSGT00940000153763.b.c #27	ENSGT00390000009272.y	ENSGT00940000157679.d	ENSGT00940000165710.e	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a.g	ENSGT00950000182923.A.ib.b.a	ENSGT00940000159785.h	ENSGT00940000157436.a.d.b	ENSGT00940000153968.a.b.b.b.o.b	ENSGT00950000182933.C.j.f	ENSGT00940000158350.d	ENSGT00390000012496.b.h.a	ENSGT01030000234994.j
Coho salmon	MODERN SPECIES	29	faah2b (ENSOKIG00005013609)	TESK1 (ENSOKIG00005013600)	pik3c3 (ENSOKIG00005012065)	ENSOKIG00005011960	ADISSP (ENSOKIG00005011939)	vax2 (ENSOKIG00005011932)	ENSOKIG00005011915	tex261 (ENSOKIG00005011887)	ENSOKIG00005011865	ENSOKIG00005011843	f13a1b (ENSOKIG00005010608)	ENSOKIG00005010536	ENSOKIG00005010532	intu (ENSOKIG00005010504)	ino80b (ENSOKIG00005010489)	AADAT (ENSOKIG00005010447) #22	mfap3l (ENSOKIG00005010431) #23	CLCN3 (ENSOKIG00005010253) #27	ENSOKIG00005010212	pfdn2 (ENSOKIG00005010195)	b4gat1 (ENSOKIG00005010183)	six7 (ENSOKIG00005010174)	zgc:101810 (ENSOKIG00005009745)	ENSOKIG00005009720	GAL3ST3 (ENSOKIG00005009716)	CCS (ENSOKIG00005009664)	ENSOKIG00005009652	ACTN3 (ENSOKIG00005008882)	MYADM (ENSOKIG00005008791)	ENSOKIG00005008525	vangl2 (ENSOKIG00005008481)
Chinook salmon	MODERN SPECIES	6	faah2b (ENSOTSG00005011740)	ENSOTSG00005011737	pik3c3 (ENSOTSG00005009976)	MSMP (ENSOTSG00005009968)	vax2 (ENSOTSG00005009967)	ENSOTSG00005009965	tex261 (ENSOTSG00005009964)	ENSOTSG00005009963	ENSOTSG00005009962	ENSOTSG00005009961	f13a1b (ENSOTSG00005009529)	ENSOTSG00005009525	ENSOTSG00005009522	intu (ENSOTSG00005009518)	ino80b (ENSOTSG00005009515)	AADAT (ENSOTSG00005009514) #22	mfap3l (ENSOTSG00005009513) #23	CLCN3 (ENSOTSG00005009288) #27	pfdn2 (ENSOTSG00005009281)	b4gat1 (ENSOTSG00005046186)	six7 (ENSOTSG00005046185)	zgc:101810 (ENSOTSG00005046184)	ENSOTSG00005046180	GAL3ST3 (ENSOTSG00005046181)	CCS (ENSOTSG00005046179)	rbm14b (ENSOTSG00005046177)	actn3a (ENSOTSG00005045054)	MYADM (ENSOTSG00005045052)	ENSOTSG00005044873	vangl2 (ENSOTSG00005044870)	ENSOTSG00005044868
Rainbow trout	MODERN SPECIES	13	faah2b (ENSOMYG00000034748)	ENSOMYG00000034729	pik3c3 (ENSOMYG00000034644)	ENSOMYG00000048432	ENSOMYG00000034556	vax2 (ENSOMYG00000034543)	ENSOMYG00000034530	tex261 (ENSOMYG00000034527)	ENSOMYG00000034514	ENSOMYG00000034507	f13a1b (ENSOMYG00000033096)	cxcl8c (ENSOMYG00000032822)	ENSOMYG00000032811	intu (ENSOMYG00000032797)	ino80b (ENSOMYG00000032784)	AADAT (ENSOMYG00000032713) #22	mfap3l (ENSOMYG00000032648) #23	CLCN3 (ENSOMYG00000031412) #27	pfdn2 (ENSOMYG00000031201)	six7 (ENSOMYG00000027274)	zgc:101810 (ENSOMYG00000027235)	ENSOMYG00000027185	ENSOMYG00000027212	ENSOMYG00000027164	ENSOMYG00000027151	ENSOMYG00000025518	ENSOMYG00000067694	ENSOMYG00000024422	ENSOMYG00000024372	ENSOMYG00000024479	ENSOMYG00000024499
Salmo	ANCESTRAL SPECIES	70	ENSGT00940000162502.b	ENSGT00940000157807.g.a.c	ENSGT00940000156943.e	ENSGT00980000198711.a	ENSGT00390000008711.g.b	ENSGT00940000161043.e	ENSGT00510000048167.b.a.d	ENSGT00390000010888.g	ENSGT00390000005650	ENSGT00940000162556.F	ENSGT01050000244939.a.a.a.c.j	ENSGT00970000196824.a.b	ENSGT00990000213049	ENSGT00390000001301.g	ENSGT00390000001754.f	ENSGT00390000004594.u.a #22	ENSGT00390000011576.a.i #23	ENSGT00940000153763.b.c #27	ENSGT00390000009272.y	ENSGT00940000157679.d	ENSGT00940000165710.e	ENSGT00940000165968.c.a	ENSGT00940000165459.a.a.a.g	ENSGT00950000182923.A.ib.b.a	ENSGT00940000159785.h	ENSGT00940000157436.a.d.b	ENSGT00940000153968.a.b.b.b.o.b	ENSGT00950000182933.C.j	ENSGT00940000157662.h	ENSGT00390000012496.b.h.a	ENSGT01030000234994.j
River trout	MODERN SPECIES	38	ENSSTUG00000029019	ADISSP (ENSSTUG00000029032)	vax2 (ENSSTUG00000029039)	ENSSTUG00000029043	tex261 (ENSSTUG00000029046)	ENSSTUG00000029052	tex261 (ENSSTUG00000029073)	ENSSTUG00000029088	ENSSTUG00000029095	ENSSTUG00000029099	f13a1b (ENSSTUG00000029143)	ENSSTUG00000030828	cxcl19 (ENSSTUG00000030832)	intu (ENSSTUG00000030844)	ino80b (ENSSTUG00000030909)	AADAT (ENSSTUG00000030943) #22	mfap3l (ENSSTUG00000031065) #23	CLCN3 (ENSSTUG00000031083) #27	pfdn2 (ENSSTUG00000031235)	six7 (ENSSTUG00000031269)	zgc:101810 (ENSSTUG00000031294)	ENSSTUG00000031507	GAL3ST3 (ENSSTUG00000031527)	CCS (ENSSTUG00000031533)	rbm14b (ENSSTUG00000031555)	actn3a (ENSSTUG00000031662)	MYADM (ENSSTUG00000032679)	ENSSTUG00000032758	vangl2 (ENSSTUG00000034967)	ENSSTUG00000034981	ENSSTUG00000034998
Atlantic salmon	MODERN SPECIES	26	faah2b (ENSSSAG00000015994)	ENSSSAG00000048069	pik3c3 (ENSSSAG00000019169)	ENSSSAG00000118588	ENSSSAG00000025969	vax2 (ENSSSAG00000114551)	ENSSSAG00000026315	tex261 (ENSSSAG00000112665)	ENSSSAG00000027277	ENSSSAG00000085422	f13a (ENSSSAG00000028016)	ENSSSAG00000035492	ENSSSAG00000113011	intu (ENSSSAG00000035894)	ino80b (ENSSSAG00000121620)	aadat (ENSSSAG00000036393) #22	clcn3 (ENSSSAG00000038956) #27	mfap3l (ENSSSAG00000113098) #23	ENSSSAG00000082072	pfd2 (ENSSSAG00000045614)	b4gat1 (ENSSSAG00000045626)	six7 (ENSSSAG00000105581)	zgc:101810 (ENSSSAG00000045656)	ENSSSAG00000045702	ENSSSAG00000038006	ENSSSAG00000038142	ENSSSAG00000038633	ACTN3 (ENSSSAG00000054628)	ENSSSAG00000049170	ENSSSAG00000094894	ENSSSAG00000048993
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00940000157807.g.a.d	ENSGT00940000156943.f	ENSGT00940000154371.a.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g.a	ENSGT00940000161043.f	ENSGT00510000048167.b.a.c	ENSGT00390000010888.h	ENSGT01050000244939.a.a.a.c.i	ENSGT00970000196824.b.a	ENSGT00970000196824.b.b	ENSGT00970000196824.a.a	ENSGT00390000001301.h	ENSGT00390000001754.e	ENSGT00390000004594.u.b #22	ENSGT00390000011576.a.j #23	ENSGT00940000153763.b.d #27	ENSGT00550000075099	ENSGT00390000009272.z	ENSGT00940000157679.c	ENSGT00940000165710.f	ENSGT00940000165968.c.b	ENSGT00940000165459.a.a.a.h	ENSGT00950000182923.A.ib.b.b	ENSGT00940000159785.g	ENSGT00940000157436.a.d.a	ENSGT00940000153968.a.b.b.b.o.a	ENSGT01100000263538.A.a.a.a.l.a.a	ENSGT00950000182933.C.j	ENSGT00940000158350.d
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00940000156943.f	ENSGT00980000198711.b	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g.a	ENSGT00940000161043.f	ENSGT00510000048167.b.a.c	ENSGT00390000010888.h	ENSGT01050000244939.a.a.a.c.i	ENSGT00940000162556.G.c.b.b	ENSGT00970000196824.b.a	ENSGT00970000196824.b.b	ENSGT00970000196824.a.a	ENSGT00390000001301.h	ENSGT00390000001754.e	ENSGT00390000004594.u.b #22	ENSGT00390000011576.a.j #23	ENSGT00940000153763.b.d #27	ENSGT00550000075099.g	ENSGT00390000009272.z	ENSGT00940000157679.c	ENSGT00940000165710.f	ENSGT00940000165968.c.b	ENSGT00940000165459.a.a.a.h	ENSGT00950000182923.A.ib.b.b	ENSGT00940000159785.g	ENSGT00940000157436.a.d.a	ENSGT00940000153968.a.b.b.b.o.a	ENSGT01100000263538.A.a.a.a.l.a.a	ENSGT00950000182933.C.j.e	ENSGT00940000158350.c
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00940000157807.g.a.d	ENSGT00940000156943.f	ENSGT00980000198711.b	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g.a	ENSGT00940000161043.f	ENSGT00510000048167.b.a.c	ENSGT00390000010888.h	ENSGT01050000244939.a.a.a.c.i	ENSGT00940000162556.G.c.b.b	ENSGT00970000196824.b.a	ENSGT00970000196824.a.a	ENSGT00390000001301.h	ENSGT00390000001754.e	ENSGT00390000004594.u.b #22	ENSGT00390000011576.a.j #23	ENSGT00940000153763.b.d #27	ENSGT00550000075099.g	ENSGT00390000009272.z	ENSGT00940000157679.c	ENSGT00940000165710.f	ENSGT00940000165968.c.b	ENSGT00940000165459.a.a.a.h	ENSGT00950000182923.A.ib.b.b	ENSGT00940000159785.g	ENSGT00940000157436.a.d.a	ENSGT00940000153968.a.b.b.b.o.a	ENSGT01100000263538.A.a.a.a.l.a.a	ENSGT00950000182933.C.j.e	ENSGT00940000158350.c
Chinook salmon	MODERN SPECIES	1	tex261 (ENSOTSG00005007226)	f13a1b (ENSOTSG00005006425)	ENSOTSG00005006422	ENSOTSG00005006412	ENSOTSG00005006408	KCNJ10 (ENSOTSG00005006406)	ENSOTSG00005006405	ENSOTSG00005006404	ENSOTSG00005006402	ENSOTSG00005006401	ENSOTSG00005006399	ENSOTSG00005006392	rps6kc1 (ENSOTSG00005006383)	intu (ENSOTSG00005006382)	ino80b (ENSOTSG00005006381)	AADAT (ENSOTSG00005006351) #22	mfap3l (ENSOTSG00005006346) #23	CLCN3 (ENSOTSG00005006277) #27	nit1 (ENSOTSG00005006267)	pfdn2 (ENSOTSG00005006263)	b4gat1 (ENSOTSG00005006260)	six7 (ENSOTSG00005006255)	zgc:101810 (ENSOTSG00005006244)	ENSOTSG00005006240	GAL3ST3 (ENSOTSG00005006238)	CCS (ENSOTSG00005006231)	rbm14b (ENSOTSG00005006230)	actn3a (ENSOTSG00005005930)	ENSOTSG00005005917	ENSOTSG00005005867	ENSOTSG00005005866
Coho salmon	MODERN SPECIES	7	TESK1 (ENSOKIG00005042084)	ENSOKIG00005042058	ENSOKIG00005042028	rgp1 (ENSOKIG00005041979)	GBA2 (ENSOKIG00005041665)	ADISSP (ENSOKIG00005041607)	VAX2 (ENSOKIG00005041599)	ENSOKIG00005041506	tex261 (ENSOKIG00005041475)	f13a1b (ENSOKIG00005040914)	ENSOKIG00005040822	ENSOKIG00005040751	ENSOKIG00005040720	intu (ENSOKIG00005040676)	ino80b (ENSOKIG00005040652)	AADAT (ENSOKIG00005040570) #22	ENSOKIG00005040558	mfap3l (ENSOKIG00005040545) #23	CLCN3 (ENSOKIG00005040018) #27	nit1 (ENSOKIG00005039963)	pfdn2 (ENSOKIG00005039941)	ENSOKIG00005039932	b4gat1 (ENSOKIG00005039924)	six7 (ENSOKIG00005039912)	zgc:101810 (ENSOKIG00005039863)	ENSOKIG00005039843	GAL3ST3 (ENSOKIG00005039837)	CCS (ENSOKIG00005039799)	ENSOKIG00005039790	ACTN3 (ENSOKIG00005038460)	ENSOKIG00005038338
Salmo	ANCESTRAL SPECIES	51	ENSGT00940000156943.f	ENSGT00940000154371.a.a.a	ENSGT00390000006136	ENSGT00390000010998	ENSGT00390000008711.g.a	ENSGT00940000161043.f	ENSGT00510000048167.b.a.c	ENSGT00390000010888.h	ENSGT01050000244939.a.a.a.c.i	ENSGT00970000196824.b.a	ENSGT00970000196824.b.b	ENSGT00970000196824.a.a.b	ENSGT00970000196824.a.a.a	ENSGT00390000001301.h	ENSGT00390000001754.e	ENSGT00390000004594.u.b #22	ENSGT00390000011576.a.j #23	ENSGT00940000153763.b.d #27	ENSGT00550000075099	ENSGT00390000009272.z	ENSGT00940000157679.c	ENSGT00940000165710.f	ENSGT00940000165968.c.b	ENSGT00940000165459.a.a.a.h	ENSGT00950000182923.A.ib.b.b	ENSGT00940000159785.g	ENSGT00940000157436.a.d.a	ENSGT00940000153968.a.b.b.b.o.a	ENSGT01100000263538.A.a.a.a.l.a.a	ENSGT00940000158350.c	ENSGT00390000012496.b.h.b
River trout	MODERN SPECIES	35	ENSSTUG00000017728	ENSSTUG00000017729	ADISSP (ENSSTUG00000017731)	vax2 (ENSSTUG00000017740)	ENSSTUG00000017756	tex261 (ENSSTUG00000017797)	f13a1b (ENSSTUG00000017822)	ENSSTUG00000018018	ENSSTUG00000018026	ENSSTUG00000018032	ENSSTUG00000018040	ENSSTUG00000018068	ENSSTUG00000018085	intu (ENSSTUG00000018093)	ino80b (ENSSTUG00000018137)	AADAT (ENSSTUG00000018147) #22	mfap3l (ENSSTUG00000018163) #23	CLCN3 (ENSSTUG00000018220) #27	nit1 (ENSSTUG00000019074)	pfdn2 (ENSSTUG00000019101)	b4gat1 (ENSSTUG00000019119)	six7 (ENSSTUG00000019128)	zgc:101810 (ENSSTUG00000019134)	ENSSTUG00000019175	GAL3ST3 (ENSSTUG00000019188)	CCS (ENSSTUG00000019196)	rbm14b (ENSSTUG00000019221)	actn3a (ENSSTUG00000019286)	ENSSTUG00000019970	ENSSTUG00000019992	ENSSTUG00000019999
Atlantic salmon	MODERN SPECIES	9	GBA2 (ENSSSAG00000048715)	ENSSSAG00000118286	ENSSSAG00000089684	ENSSSAG00000052168	tex261 (ENSSSAG00000052187)	f13a1b (ENSSSAG00000052214)	ENSSSAG00000099098	ENSSSAG00000096122	ENSSSAG00000052334	ENSSSAG00000052357	ENSSSAG00000052447	ENSSSAG00000052397	ENSSSAG00000105898	intu (ENSSSAG00000052463)	ino80b (ENSSSAG00000052483)	AADAT (ENSSSAG00000052508) #22	mfa3l (ENSSSAG00000117636) #23	CLCN3 (ENSSSAG00000052679) #27	nit1 (ENSSSAG00000111815)	pfdn2 (ENSSSAG00000054161)	b4gat1 (ENSSSAG00000121271)	six7 (ENSSSAG00000084465)	zgc:101810 (ENSSSAG00000054197)	ENSSSAG00000054522	ENSSSAG00000102499	ccs (ENSSSAG00000054538)	ENSSSAG00000054562	ACTN3 (ENSSSAG00000039561)	ENSSSAG00000115150	ENSSSAG00000113171	ENSSSAG00000104088
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00390000004594.v #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000004594.v #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000004594.v #22
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2584																ENSOTSG00005019113 #22
Chinook salmon	MODERN SPECIES	2806																ENSOTSG00005021031 #22