Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Primates	ANCESTRAL SPECIES	19	ENSGT00550000074801.h	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Strepsirrhini	ANCESTRAL SPECIES	23	ENSGT00550000074801.g.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066.b #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Lemuriformes	ANCESTRAL SPECIES	48	ENSGT00940000158684	ENSGT00550000074801.g.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066.b #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164165 #35	ENSGT00950000182963.b.a #36	ENSGT00940000158080 #37
Mouse lemur	MODERN SPECIES	169	CXorf58 (ENSMICG00000036290) #7	ENSMICG00000010756 #8	SAT1 (ENSMICG00000028733) #9	ACOT9 (ENSMICG00000003532) #10	PRDX4 (ENSMICG00000031550) #11	PTCHD1 (ENSMICG00000000824) #12	PHEX (ENSMICG00000000193) #13	ENSMICG00000000192 #14	ENSMICG00000037442 #15	ENSMICG00000030382 #16	MBTPS2 (ENSMICG00000008917) #17	ENSMICG00000044479 #18	SMPX (ENSMICG00000008915) #19	KLHL34 (ENSMICG00000028251) #20	CNKSR2 (ENSMICG00000002912) #21	RPS6KA3 (ENSMICG00000004112) #22	EIF1AX (ENSMICG00000004110) #23	MAP7D2 (ENSMICG00000004105) #24	BCLAF3 (ENSMICG00000004101) #25	SH3KBP1 (ENSMICG00000004092) #26	MAP3K15 (ENSMICG00000004080) #27	PDHA1 (ENSMICG00000004067) #28	ADGRG2 (ENSMICG00000004232) #29	PHKA2 (ENSMICG00000004212) #30	PPEF1 (ENSMICG00000004203) #31	RS1 (ENSMICG00000004198) #32	CDKL5 (ENSMICG00000004179) #33	SCML2 (ENSMICG00000027531) #34	ENSMICG00000027086 #35	NHS (ENSMICG00000036975) #36	REPS2 (ENSMICG00000003790) #37
Lemuriformes_a	ANCESTRAL SPECIES	204																ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000159407 #34
Greater bamboo lemur	MODERN SPECIES	897																RPS6KA3 (ENSPSMG00000012048) #22	ENSPSMG00000012611 #23	ENSPSMG00000012718	MAP7D2 (ENSPSMG00000012793) #24	BCLAF3 (ENSPSMG00000012870) #25
Bushbaby	MODERN SPECIES	166	APOO (ENSOGAG00000001960) #8	SAT1 (ENSOGAG00000010447) #9	ACOT9 (ENSOGAG00000002305) #10	PRDX4 (ENSOGAG00000011610) #11	ENSOGAG00000026297	ENSOGAG00000034242	PTCHD1 (ENSOGAG00000016650) #12	ENSOGAG00000026282	PHEX (ENSOGAG00000010894) #13	ENSOGAG00000010892 #14	MBTPS2 (ENSOGAG00000011151) #17	SMPX (ENSOGAG00000015469) #19	KLHL34 (ENSOGAG00000027270) #20	CNKSR2 (ENSOGAG00000015464) #21	ENSOGAG00000032783	RPS6KA3 (ENSOGAG00000008184) #22	ENSOGAG00000008182 #23	ENSOGAG00000033040	MAP7D2 (ENSOGAG00000008176) #24	BCLAF3 (ENSOGAG00000008168) #25	SH3KBP1 (ENSOGAG00000002469) #26	MAP3K15 (ENSOGAG00000002467) #27	PDHA1 (ENSOGAG00000002466) #28	ADGRG2 (ENSOGAG00000011733) #29	PHKA2 (ENSOGAG00000002436) #30	PPEF1 (ENSOGAG00000002431) #31	RS1 (ENSOGAG00000002430) #32	CDKL5 (ENSOGAG00000002429) #33	ENSOGAG00000031862	SCML2 (ENSOGAG00000012455) #34	ENSOGAG00000012713
Haplorrhini	ANCESTRAL SPECIES	18	ENSGT00940000158684	ENSGT00550000074801.h	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a #36
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00940000158684	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00550000074801.h.d	ENSGT00550000074801.h.c.a	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Hominidae	ANCESTRAL SPECIES	8	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT00940000157313 #13	ENSGT00870000136506.pb #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT00940000157313 #13	ENSGT00870000136506.pb #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT00940000157313 #13	ENSGT00870000136506.pb #14	ENSGT00940000167584	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154164.d
Pan	ANCESTRAL SPECIES	6	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT00940000166413	ENSGT00940000157313 #13	ENSGT00870000136506.pb #14	ENSGT00940000167584	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000164589
Chimpanzee	MODERN SPECIES	972	CXorf58 (ENSPTRG00000048338) #7	APOO (ENSPTRG00000021742) #8	ENSPTRG00000049093 #9	ACOT9 (ENSPTRG00000021740) #10	PRDX4 (ENSPTRG00000049325) #11	PTCHD1 (ENSPTRG00000021738) #12	DDX53 (ENSPTRG00000028313)	ENSPTRG00000047608	CBLL2 (ENSPTRG00000028314)	PHEX (ENSPTRG00000021737) #13	ENSPTRG00000044028 #14	MBTPS2 (ENSPTRG00000021735) #17	SMPX (ENSPTRG00000047975) #19	KLHL34 (ENSPTRG00000021733) #20	CNKSR2 (ENSPTRG00000021731) #21	RPS6KA3 (ENSPTRG00000052293) #22	ENSPTRG00000021728 #23	MAP7D2 (ENSPTRG00000021727) #24	BCLAF3 (ENSPTRG00000021725) #25	SH3KBP1 (ENSPTRG00000048773) #26	MAP3K15 (ENSPTRG00000022605) #27	PDHA1 (ENSPTRG00000021717) #28	ADGRG2 (ENSPTRG00000021716) #29	PHKA2 (ENSPTRG00000021715) #30	ENSPTRG00000046843	PPEF1 (ENSPTRG00000021714) #31	RS1 (ENSPTRG00000021713) #32	CDKL5 (ENSPTRG00000021711) #33	SCML2 (ENSPTRG00000021710) #34	BEND2 (ENSPTRG00000021708)	SCML1 (ENSPTRG00000021706)
Bonobo	MODERN SPECIES	369	APOO (ENSPPAG00000033503) #8	SAT1 (ENSPPAG00000035932) #9	ACOT9 (ENSPPAG00000037237) #10	PRDX4 (ENSPPAG00000038998) #11	PTCHD1 (ENSPPAG00000013963) #12	DDX53 (ENSPPAG00000006869)	ENSPPAG00000031560	CBLL2 (ENSPPAG00000006152)	PHEX (ENSPPAG00000012368) #13	ENSPPAG00000035805 #14	YY2 (ENSPPAG00000033052)	MBTPS2 (ENSPPAG00000033207) #17	SMPX (ENSPPAG00000030194) #19	KLHL34 (ENSPPAG00000025617) #20	CNKSR2 (ENSPPAG00000037182) #21	RPS6KA3 (ENSPPAG00000029748) #22	EIF1AX (ENSPPAG00000033962) #23	MAP7D2 (ENSPPAG00000040804) #24	BCLAF3 (ENSPPAG00000040123) #25	SH3KBP1 (ENSPPAG00000037769) #26	MAP3K15 (ENSPPAG00000039708) #27	PDHA1 (ENSPPAG00000032993) #28	ADGRG2 (ENSPPAG00000044060) #29	PHKA2 (ENSPPAG00000036527) #30	ENSPPAG00000027509	PPEF1 (ENSPPAG00000027881) #31	RS1 (ENSPPAG00000040996) #32	CDKL5 (ENSPPAG00000027668) #33	SCML2 (ENSPPAG00000039952) #34	BEND2 (ENSPPAG00000032642)	SCML1 (ENSPPAG00000031177)
Human	MODERN SPECIES	1827	APOO (ENSG00000184831) #8	ENSG00000288706	SAT1 (ENSG00000130066) #9	ACOT9 (ENSG00000123130) #10	PRDX4 (ENSG00000123131) #11	PTCHD1 (ENSG00000165186) #12	DDX53 (ENSG00000184735)	CBLL2 (ENSG00000175809)	PHEX (ENSG00000102174) #13	SMS (ENSG00000102172) #14	YY2 (ENSG00000230797)	MBTPS2 (ENSG00000012174) #17	SMPX (ENSG00000091482) #19	KLHL34 (ENSG00000185915) #20	CNKSR2 (ENSG00000149970) #21	RPS6KA3 (ENSG00000177189) #22	EIF1AX (ENSG00000173674) #23	MAP7D2 (ENSG00000184368) #24	BCLAF3 (ENSG00000173681) #25	SH3KBP1 (ENSG00000147010) #26	MAP3K15 (ENSG00000180815) #27	PDHA1 (ENSG00000131828) #28	ADGRG2 (ENSG00000173698) #29	PHKA2 (ENSG00000044446) #30	PPEF1 (ENSG00000086717) #31	RS1 (ENSG00000102104) #32	CDKL5 (ENSG00000008086) #33	SCML2 (ENSG00000102098) #34	BEND2 (ENSG00000177324)	RAI2 (ENSG00000131831)	SCML1 (ENSG00000047634)
Gorilla	MODERN SPECIES	523	CXorf58 (ENSGGOG00000016257) #7	APOO (ENSGGOG00000001200) #8	SAT1 (ENSGGOG00000027873) #9	ACOT9 (ENSGGOG00000015401) #10	PRDX4 (ENSGGOG00000026790) #11	PTCHD1 (ENSGGOG00000044059) #12	ENSGGOG00000036181	ENSGGOG00000026912	CBLL2 (ENSGGOG00000034821)	ENSGGOG00000003961 #13	ENSGGOG00000003123 #14	MBTPS2 (ENSGGOG00000012064) #17	SMPX (ENSGGOG00000004353) #19	KLHL34 (ENSGGOG00000002780) #20	CNKSR2 (ENSGGOG00000013768) #21	RPS6KA3 (ENSGGOG00000008837) #22	ENSGGOG00000012186 #23	MAP7D2 (ENSGGOG00000007760) #24	BCLAF3 (ENSGGOG00000009453) #25	SH3KBP1 (ENSGGOG00000008333) #26	MAP3K15 (ENSGGOG00000008317) #27	ENSGGOG00000013574 #28	ENSGGOG00000040627	ADGRG2 (ENSGGOG00000003424) #29	PHKA2 (ENSGGOG00000003407) #30	PPEF1 (ENSGGOG00000003393) #31	RS1 (ENSGGOG00000023949) #32	CDKL5 (ENSGGOG00000010796) #33	SCML2 (ENSGGOG00000015959) #34	BEND2 (ENSGGOG00000003458)	SCML1 (ENSGGOG00000003874)
Orangutan	MODERN SPECIES	242	CXorf58 (ENSPPYG00000020192) #7	APOO (ENSPPYG00000020191) #8	SAT1 (ENSPPYG00000020190) #9	ACOT9 (ENSPPYG00000020189) #10	ENSPPYG00000020188 #11	PTCHD1 (ENSPPYG00000020187) #12	DDX53 (ENSPPYG00000020185)	ENSPPYG00000036724	CBLL2 (ENSPPYG00000020184)	PHEX (ENSPPYG00000020183) #13	SMS (ENSPPYG00000020182) #14	MBTPS2 (ENSPPYG00000020181) #17	SMPX (ENSPPYG00000020180) #19	KLHL34 (ENSPPYG00000020179) #20	CNKSR2 (ENSPPYG00000020178) #21	RPS6KA3 (ENSPPYG00000020177) #22	EIF1AX (ENSPPYG00000038921) #23	MAP7D2 (ENSPPYG00000020175) #24	BCLAF3 (ENSPPYG00000020174) #25	SH3KBP1 (ENSPPYG00000020173) #26	MAP3K15 (ENSPPYG00000020172) #27	PDHA1 (ENSPPYG00000020171) #28	ADGRG2 (ENSPPYG00000020170) #29	PHKA2 (ENSPPYG00000020169) #30	ENSPPYG00000038507	PPEF1 (ENSPPYG00000020168) #31	RS1 (ENSPPYG00000020167) #32	CDKL5 (ENSPPYG00000020166) #33	SCML2 (ENSPPYG00000020165) #34	BEND2 (ENSPPYG00000020164)	RAI2 (ENSPPYG00000020163)
Gibbon	MODERN SPECIES	449	ZFX (ENSNLEG00000010044)	ENSNLEG00000028019	KLHL15 (ENSNLEG00000010036)	ENSNLEG00000010026 #8	SAT1 (ENSNLEG00000010015) #9	ACOT9 (ENSNLEG00000010007) #10	PRDX4 (ENSNLEG00000029389) #11	PTCHD1 (ENSNLEG00000010004) #12	ENSNLEG00000027485	ENSNLEG00000018743	PHEX (ENSNLEG00000009980) #13	SMS (ENSNLEG00000009955) #14	MBTPS2 (ENSNLEG00000009943) #17	SMPX (ENSNLEG00000009938) #19	CNKSR2 (ENSNLEG00000009933) #21	RPS6KA3 (ENSNLEG00000009925) #22	ENSNLEG00000009913 #23	MAP7D2 (ENSNLEG00000009884) #24	ENSNLEG00000009882	BCLAF3 (ENSNLEG00000009878) #25	SH3KBP1 (ENSNLEG00000009860) #26	MAP3K15 (ENSNLEG00000009849) #27	PDHA1 (ENSNLEG00000009805) #28	ADGRG2 (ENSNLEG00000009745) #29	PHKA2 (ENSNLEG00000009732) #30	ENSNLEG00000029919	PPEF1 (ENSNLEG00000009696) #31	RS1 (ENSNLEG00000009691) #32	CDKL5 (ENSNLEG00000009674) #33	ENSNLEG00000027405	SCML2 (ENSNLEG00000009648) #34
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00550000074801.h.c.a.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Rhinopithecus	ANCESTRAL SPECIES	500																ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b.c #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00910000148115	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30
Golden snub-nosed monkey	MODERN SPECIES	2178																RPS6KA3 (ENSRROG00000035569) #22	EIF1AX (ENSRROG00000042555) #23	MAP7D2 (ENSRROG00000026767) #24	ENSRROG00000036041
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00550000074801.h.c.a.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154164.d
Vervet Monkey	MODERN SPECIES	203	KLHL15 (ENSCSAG00000014371)	CXorf58 (ENSCSAG00000014383) #7	APOO (ENSCSAG00000014393) #8	SAT1 (ENSCSAG00000014398) #9	ACOT9 (ENSCSAG00000014405) #10	PRDX4 (ENSCSAG00000014411) #11	PTCHD1 (ENSCSAG00000014414) #12	DDX53 (ENSCSAG00000019540)	ENSCSAG00000019539	PHEX (ENSCSAG00000014426) #13	SMS (ENSCSAG00000014438) #14	MBTPS2 (ENSCSAG00000014446) #17	SMPX (ENSCSAG00000014455) #19	KLHL34 (ENSCSAG00000019538) #20	CNKSR2 (ENSCSAG00000014511) #21	RPS6KA3 (ENSCSAG00000014553) #22	EIF1AX (ENSCSAG00000014562) #23	MAP7D2 (ENSCSAG00000014575) #24	BCLAF3 (ENSCSAG00000014582) #25	SH3KBP1 (ENSCSAG00000014593) #26	MAP3K15 (ENSCSAG00000014608) #27	ADGRG2 (ENSCSAG00000014621) #29	PHKA2 (ENSCSAG00000014634) #30	PPEF1 (ENSCSAG00000014696) #31	RS1 (ENSCSAG00000014719) #32	CDKL5 (ENSCSAG00000014729) #33	SCML2 (ENSCSAG00000014738) #34	BEND2 (ENSCSAG00000014759)	RAI2 (ENSCSAG00000019537)	SCML1 (ENSCSAG00000014776)	NHS (ENSCSAG00000014780) #36
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00550000074801.h.c.a.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562.e.b #27	ENSGT00940000159562.e.a #27	ENSGT00530000063174.a.i.e #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00530000063666.b.h.b #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562.f #27	ENSGT00530000063174.a.i.e #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00940000164589
Olive baboon	MODERN SPECIES	792	DDX53 (ENSPANG00000037837)	ENSPANG00000035706	ENSPANG00000045931	ENSPANG00000037872	CBLL2 (ENSPANG00000046007)	ENSPANG00000037098	PHEX (ENSPANG00000010105) #13	SMS (ENSPANG00000003155) #14	MBTPS2 (ENSPANG00000024280) #17	ENSPANG00000050152	SMPX (ENSPANG00000005741) #19	KLHL34 (ENSPANG00000012353) #20	CNKSR2 (ENSPANG00000011941) #21	ENSPANG00000029508	ENSPANG00000006351	RPS6KA3 (ENSPANG00000016330) #22	EIF1AX (ENSPANG00000030224) #23	MAP7D2 (ENSPANG00000019661) #24	BCLAF3 (ENSPANG00000004509) #25	SH3KBP1 (ENSPANG00000006736) #26	MAP3K15 (ENSPANG00000007384) #27	ENSPANG00000035301 #28	ADGRG2 (ENSPANG00000004239) #29	PHKA2 (ENSPANG00000016122) #30	ENSPANG00000029606	PPEF1 (ENSPANG00000010228) #31	ENSPANG00000035243	CDKL5 (ENSPANG00000004460) #33	ENSPANG00000041187	SCML2 (ENSPANG00000018991) #34	RAI2 (ENSPANG00000015463)
Cercopithecinae_d	ANCESTRAL SPECIES	51	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562.f #27	ENSGT00530000063174.a.i.e #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164589	ENSGT00950000182963.b.a #36
Drill	MODERN SPECIES	1190																RPS6KA3 (ENSMLEG00000034063) #22	EIF1AX (ENSMLEG00000031392) #23	MAP7D2 (ENSMLEG00000018058) #24	BCLAF3 (ENSMLEG00000016996) #25	SH3KBP1 (ENSMLEG00000038375) #26	MAP3K15 (ENSMLEG00000028673) #27	ENSMLEG00000033588 #28	ADGRG2 (ENSMLEG00000030833) #29	PHKA2 (ENSMLEG00000029623) #30	ENSMLEG00000025963	PPEF1 (ENSMLEG00000035187) #31	RS1 (ENSMLEG00000024203) #32	CDKL5 (ENSMLEG00000038004) #33	SCML2 (ENSMLEG00000007077) #34
Sooty mangabey	MODERN SPECIES	448	APOO (ENSCATG00000031869) #8	ENSCATG00000032289	SAT1 (ENSCATG00000044813) #9	ACOT9 (ENSCATG00000031637) #10	PRDX4 (ENSCATG00000040922) #11	PTCHD1 (ENSCATG00000018108) #12	CBLL2 (ENSCATG00000014814)	PHEX (ENSCATG00000031574) #13	SMS (ENSCATG00000032661) #14	MBTPS2 (ENSCATG00000031542) #17	ENSCATG00000037334	SMPX (ENSCATG00000043293) #19	KLHL34 (ENSCATG00000014878) #20	CNKSR2 (ENSCATG00000035326) #21	ENSCATG00000035316	RPS6KA3 (ENSCATG00000036143) #22	EIF1AX (ENSCATG00000033237) #23	MAP7D2 (ENSCATG00000042697) #24	BCLAF3 (ENSCATG00000039065) #25	SH3KBP1 (ENSCATG00000034119) #26	MAP3K15 (ENSCATG00000024304) #27	PDHA1 (ENSCATG00000044567) #28	ADGRG2 (ENSCATG00000035439) #29	PHKA2 (ENSCATG00000044694) #30	ENSCATG00000037972	PPEF1 (ENSCATG00000043035) #31	RS1 (ENSCATG00000029796) #32	CDKL5 (ENSCATG00000041616) #33	SCML2 (ENSCATG00000038994) #34	BEND2 (ENSCATG00000036336)	SCML1 (ENSCATG00000006222)
Macaca	ANCESTRAL SPECIES	29	ENSGT00550000074801.h.c.a.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00940000154326.a.a.h.e.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562.e.b #27	ENSGT00530000063174.a.i.e #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154164.d
Pig-tailed macaque	MODERN SPECIES	549	KLHL15 (ENSMNEG00000006144)	CXorf58 (ENSMNEG00000045055) #7	APOO (ENSMNEG00000021703) #8	ENSMNEG00000042646	SAT1 (ENSMNEG00000028507) #9	ACOT9 (ENSMNEG00000034251) #10	PRDX4 (ENSMNEG00000030258) #11	PTCHD1 (ENSMNEG00000031256) #12	PHEX (ENSMNEG00000030561) #13	SMS (ENSMNEG00000030826) #14	ENSMNEG00000036966	MBTPS2 (ENSMNEG00000018031) #17	SMPX (ENSMNEG00000044214) #19	KLHL34 (ENSMNEG00000004752) #20	CNKSR2 (ENSMNEG00000033243) #21	RPS6KA3 (ENSMNEG00000013736) #22	EIF1AX (ENSMNEG00000035197) #23	MAP7D2 (ENSMNEG00000042827) #24	BCLAF3 (ENSMNEG00000044107) #25	ENSMNEG00000039258	SH3KBP1 (ENSMNEG00000037170) #26	MAP3K15 (ENSMNEG00000029196) #27	ENSMNEG00000043035 #28	ADGRG2 (ENSMNEG00000043949) #29	PHKA2 (ENSMNEG00000039386) #30	ENSMNEG00000028824	PPEF1 (ENSMNEG00000034590) #31	RS1 (ENSMNEG00000043209) #32	CDKL5 (ENSMNEG00000004730) #33	SCML2 (ENSMNEG00000011431) #34	BEND2 (ENSMNEG00000036925)
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000167221	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000157313 #13	ENSGT00870000136506.ob.b #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000164709.a.b.b.a.b.b.b.a.b	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562.e.b #27	ENSGT00530000063174.a.i.e #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000167769	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154164.d
Crab-eating macaque	MODERN SPECIES	175	ACOT9 (ENSMFAG00000041858) #10	PRDX4 (ENSMFAG00000036346) #11	PTCHD1 (ENSMFAG00000056214) #12	DDX53 (ENSMFAG00000063689)	ENSMFAG00000055175	CBLL2 (ENSMFAG00000061234)	ENSMFAG00000064976	ENSMFAG00000057337	PHEX (ENSMFAG00000045722) #13	SMS (ENSMFAG00000039117) #14	MBTPS2 (ENSMFAG00000042182) #17	SMPX (ENSMFAG00000040826) #19	CNKSR2 (ENSMFAG00000037951) #21	ENSMFAG00000052941	ENSMFAG00000061291	RPS6KA3 (ENSMFAG00000045085) #22	ENSMFAG00000060557 #23	MAP7D2 (ENSMFAG00000055804) #24	BCLAF3 (ENSMFAG00000003230) #25	ENSMFAG00000021756	SH3KBP1 (ENSMFAG00000002962) #26	ENSMFAG00000000869 #27	ENSMFAG00000058383 #27	PDHA1 (ENSMFAG00000043170) #28	ADGRG2 (ENSMFAG00000001073) #29	PHKA2 (ENSMFAG00000044106) #30	ENSMFAG00000034482	PPEF1 (ENSMFAG00000032152) #31	RS1 (ENSMFAG00000003687) #32	CDKL5 (ENSMFAG00000030921) #33	SCML2 (ENSMFAG00000042495) #34
Rhesus	MODERN SPECIES	327	SAT1 (ENSMMUG00000060580) #9	ACOT9 (ENSMMUG00000018824) #10	ENSMMUG00000056089	PRDX4 (ENSMMUG00000021366) #11	PTCHD1 (ENSMMUG00000001088) #12	DDX53 (ENSMMUG00000022142)	CBLL2 (ENSMMUG00000003250)	PHEX (ENSMMUG00000023589) #13	SMS (ENSMMUG00000020392) #14	ENSMMUG00000051932	YY2 (ENSMMUG00000022467)	SMPX (ENSMMUG00000057558) #19	KLHL34 (ENSMMUG00000007501) #20	CNKSR2 (ENSMMUG00000007500) #21	ENSMMUG00000063057	RPS6KA3 (ENSMMUG00000002134) #22	EIF1AX (ENSMMUG00000051148) #23	MAP7D2 (ENSMMUG00000000192) #24	BCLAF3 (ENSMMUG00000004745) #25	ENSMMUG00000010727	SH3KBP1 (ENSMMUG00000004744) #26	MAP3K15 (ENSMMUG00000061236) #27	PDHA1 (ENSMMUG00000017336) #28	ADGRG2 (ENSMMUG00000020515) #29	PHKA2 (ENSMMUG00000020513) #30	PPEF1 (ENSMMUG00000005066) #31	RS1 (ENSMMUG00000005065) #32	CDKL5 (ENSMMUG00000005063) #33	SCML2 (ENSMMUG00000005084) #34	BEND2 (ENSMMUG00000019969)	RAI2 (ENSMMUG00000001433)
Platyrrhini	ANCESTRAL SPECIES	28	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.d #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00390000003791.g.b	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886.g #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i.a #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000164589	ENSGT00950000182963.b.a #36
Mas night monkey	MODERN SPECIES	814			ENSANAG00000023417	CBLL2 (ENSANAG00000024818)	PHEX (ENSANAG00000021236) #13	ENSANAG00000030126	ENSANAG00000032026	SMS (ENSANAG00000031156) #14	MBTPS2 (ENSANAG00000022738) #17	ENSANAG00000034743	SMPX (ENSANAG00000035900) #19	KLHL34 (ENSANAG00000020210) #20	CNKSR2 (ENSANAG00000030385) #21	ENSANAG00000019923	ENSANAG00000000067	RPS6KA3 (ENSANAG00000026591) #22	ENSANAG00000025820	ENSANAG00000030856 #23	MAP7D2 (ENSANAG00000037417) #24	ENSANAG00000026646 #25	ENSANAG00000034832 #26	ENSANAG00000030233	MAP3K15 (ENSANAG00000034023) #27	PDHA1 (ENSANAG00000030855) #28	ADGRG2 (ENSANAG00000034597) #29	PHKA2 (ENSANAG00000038435) #30	PPEF1 (ENSANAG00000023404) #31	RS1 (ENSANAG00000029033) #32	CDKL5 (ENSANAG00000034696) #33	SCML2 (ENSANAG00000020966) #34	ENSANAG00000037962
Cebidae	ANCESTRAL SPECIES	18	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.d.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00390000003791.g.b	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886.g #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i.a #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000164589	ENSGT00950000182963.b.a #36
Marmoset	MODERN SPECIES	78	ACOT9 (ENSCJAG00000040134) #10	ENSCJAG00000005061 #11	ENSCJAG00000072526	PTCHD1 (ENSCJAG00000005108) #12	ENSCJAG00000060367	ENSCJAG00000073282	ENSCJAG00000072524	PHEX (ENSCJAG00000005121) #13	SMS (ENSCJAG00000033933) #14	MBTPS2 (ENSCJAG00000046733) #17	SMPX (ENSCJAG00000005203) #19	KLHL34 (ENSCJAG00000041270) #20	CNKSR2 (ENSCJAG00000005220) #21	ENSCJAG00000073658	ENSCJAG00000005365	RPS6KA3 (ENSCJAG00000005239) #22	MAP7D2 (ENSCJAG00000005383) #24	ENSCJAG00000079762	ENSCJAG00000022320	BCLAF3 (ENSCJAG00000045691) #25	ENSCJAG00000005459 #27	ENSCJAG00000005496 #28	ENSCJAG00000073410	ENSCJAG00000072791	ADGRG2 (ENSCJAG00000005571) #29	ENSCJAG00000082522	PHKA2 (ENSCJAG00000005668) #30	PPEF1 (ENSCJAG00000005798) #31	RS1 (ENSCJAG00000005829) #32	CDKL5 (ENSCJAG00000005834) #33	SCML2 (ENSCJAG00000005875) #34
Cebidae_a	ANCESTRAL SPECIES	36	ENSGT00940000158684	ENSGT00550000074801.h.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.h.d.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00390000003791.g.b	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886.g #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i.a #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000164688	ENSGT00940000154174.s.a.b	ENSGT00940000164589
Capuchin	MODERN SPECIES	128							ENSCCAG00000024171	PHEX (ENSCCAG00000021705) #13	SMS (ENSCCAG00000038102) #14	MBTPS2 (ENSCCAG00000030619) #17	ENSCCAG00000034966	SMPX (ENSCCAG00000028916) #19	ENSCCAG00000031773	CNKSR2 (ENSCCAG00000029076) #21	ENSCCAG00000026463	RPS6KA3 (ENSCCAG00000036661) #22	EIF1AX (ENSCCAG00000020517) #23	MAP7D2 (ENSCCAG00000034873) #24	BCLAF3 (ENSCCAG00000021782) #25	ENSCCAG00000024335 #26	MAP3K15 (ENSCCAG00000019733) #27	ENSCCAG00000020724 #28	ENSCCAG00000025967	ENSCCAG00000033194	ADGRG2 (ENSCCAG00000021576) #29	PHKA2 (ENSCCAG00000037761) #30	PPEF1 (ENSCCAG00000018308) #31	RS1 (ENSCCAG00000037547) #32	CDKL5 (ENSCCAG00000028839) #33	SCML2 (ENSCCAG00000029741) #34	BEND2 (ENSCCAG00000028740)
Bolivian squirrel monkey	MODERN SPECIES	51	CXorf58 (ENSSBOG00000023363) #7	ENSSBOG00000023578 #8	SAT1 (ENSSBOG00000023952) #9	ACOT9 (ENSSBOG00000035947) #10	PRDX4 (ENSSBOG00000026851) #11	PTCHD1 (ENSSBOG00000022861) #12	ENSSBOG00000017959	ENSSBOG00000022205	PHEX (ENSSBOG00000035899) #13	ENSSBOG00000000154	SMS (ENSSBOG00000024222) #14	MBTPS2 (ENSSBOG00000029363) #17	SMPX (ENSSBOG00000033495) #19	CNKSR2 (ENSSBOG00000029741) #21	ENSSBOG00000018382	RPS6KA3 (ENSSBOG00000034830) #22	ENSSBOG00000029635	ENSSBOG00000031558 #23	MAP7D2 (ENSSBOG00000029797) #24	BCLAF3 (ENSSBOG00000031024) #25	ENSSBOG00000036210 #26	ENSSBOG00000026951	MAP3K15 (ENSSBOG00000023444) #27	PDHA1 (ENSSBOG00000021023) #28	ADGRG2 (ENSSBOG00000036029) #29	PHKA2 (ENSSBOG00000028848) #30	PPEF1 (ENSSBOG00000025564) #31	RS1 (ENSSBOG00000022074) #32	CDKL5 (ENSSBOG00000034927) #33	SCML2 (ENSSBOG00000023475) #34	BEND2 (ENSSBOG00000034571)
Tarsier	MODERN SPECIES	5349																RPS6KA3 (ENSTSYG00000012466) #22	EIF1AX (ENSTSYG00000012460) #23	MAP7D2 (ENSTSYG00000012457) #24	BCLAF3 (ENSTSYG00000004803) #25
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256 #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Tree shrew	MODERN SPECIES	3935																RPS6KA3 (ENSTBEG00000017583) #22	EIF1AX (ENSTBEG00000017492) #23	MAP7D2 (ENSTBEG00000017363) #24	BCLAF3 (ENSTBEG00000016865) #25
Glires	ANCESTRAL SPECIES	10	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00940000164165 #35	ENSGT00950000182963.b.a #36
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00550000074801.g.b.f	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000154164.d	ENSGT00940000164165 #35	ENSGT00950000182963.b.a #36	ENSGT00940000158080 #37
Hystricomorpha_a	ANCESTRAL SPECIES	60	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00940000154763.mb	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00940000164165 #35	ENSGT00950000182963.b.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	73	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00940000154763.mb	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36	ENSGT00940000158080 #37
Degu	MODERN SPECIES	51	ENSODEG00000017745	RAB11FIP2 (ENSODEG00000017734)	EMX2 (ENSODEG00000017809)	PDZD8 (ENSODEG00000017906)	ENSODEG00000017723	ENSODEG00000017676	SLC18A2 (ENSODEG00000017927)	ENSODEG00000017686	VAX1 (ENSODEG00000017835)	ENSODEG00000017629	ENSODEG00000017664	ENSODEG00000017934	ENO4 (ENSODEG00000017769)	HSPA12A (ENSODEG00000017751)	C10orf82 (ENSODEG00000017640)	RPS6KA3 (ENSODEG00000017781) #22	ENSODEG00000017687 #23	MAP7D2 (ENSODEG00000017740) #24	ENSODEG00000017632	BCLAF3 (ENSODEG00000018128) #25	SH3KBP1 (ENSODEG00000017905) #26	MAP3K15 (ENSODEG00000017836) #27	ENSODEG00000017773 #28
Long-tailed chinchilla	MODERN SPECIES	216	KLHL15 (ENSCLAG00000001609)	CXorf58 (ENSCLAG00000001251) #7	APOO (ENSCLAG00000001143) #8	SAT1 (ENSCLAG00000002420) #9	ACOT9 (ENSCLAG00000002263) #10	PRDX4 (ENSCLAG00000002107) #11	PTCHD1 (ENSCLAG00000002022) #12	ENSCLAG00000017424	PHEX (ENSCLAG00000000629) #13	SMS (ENSCLAG00000000492) #14	ENSCLAG00000000440	MBTPS2 (ENSCLAG00000001960) #17	SMPX (ENSCLAG00000000955) #19	KLHL34 (ENSCLAG00000017438) #20	CNKSR2 (ENSCLAG00000000928) #21	RPS6KA3 (ENSCLAG00000000667) #22	EIF1AX (ENSCLAG00000000709) #23	MAP7D2 (ENSCLAG00000001716) #24	BCLAF3 (ENSCLAG00000001580) #25	SH3KBP1 (ENSCLAG00000001780) #26
Guinea pig	MODERN SPECIES	59	EIF2S3B (ENSCPOG00000000660)	KLHL15 (ENSCPOG00000040332)	ENSCPOG00000014536 #7	ENSCPOG00000004197 #8	SAT1 (ENSCPOG00000037886) #9	ACOT9 (ENSCPOG00000004188) #10	PRDX4 (ENSCPOG00000004185) #11	PTCHD1 (ENSCPOG00000035225) #12	ENSCPOG00000013960	PHEX (ENSCPOG00000006183) #13	ENSCPOG00000006176 #14	MBTPS2 (ENSCPOG00000006171) #17	SMPX (ENSCPOG00000033393) #19	KLHL34 (ENSCPOG00000035985) #20	CNKSR2 (ENSCPOG00000009806) #21	RPS6KA3 (ENSCPOG00000008719) #22	EIF1AX (ENSCPOG00000039205) #23	MAP7D2 (ENSCPOG00000008706) #24	BCLAF3 (ENSCPOG00000008695) #25	SH3KBP1 (ENSCPOG00000006433) #26	MAP3K15 (ENSCPOG00000011102) #27	ENSCPOG00000009280 #28	ADGRG2 (ENSCPOG00000011079) #29	PHKA2 (ENSCPOG00000011064) #30	PPEF1 (ENSCPOG00000006617) #31	RS1 (ENSCPOG00000007446) #32	CDKL5 (ENSCPOG00000007438) #33	RAI2 (ENSCPOG00000015535)	ENSCPOG00000038636 #35	NHS (ENSCPOG00000020088) #36
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000044443	ENSHGLG00000040071 #35	ENSHGLG00000001166	ENSHGLG00000001331	ENSHGLG00000045573	ENSHGLG00000049321	ENSHGLG00000032273 #34	ENSHGLG00000038266	CDKL5 (ENSHGLG00000001743) #33	RS1 (ENSHGLG00000001057) #32	PPEF1 (ENSHGLG00000001185) #31	ENSHGLG00000001092	PHKA2 (ENSHGLG00000001760) #30	ENSHGLG00000015862 #29	ENSHGLG00000001460	ENSHGLG00000001399 #22	ENSHGLG00000034312 #23	MAP7D2 (ENSHGLG00000001155) #24	BCLAF3 (ENSHGLG00000001058) #25	ENSHGLG00000038256	ENSHGLG00000000866 #26	ENSHGLG00000000584 #27	ENSHGLG00000020000	ENSHGLG00000000543 #28	ENSHGLG00000044116	ENSHGLG00000050318	ENSHGLG00000000563	ENSHGLG00000020425	ENSHGLG00000033146	ENSHGLG00000003413 #12	PHEX (ENSHGLG00000003219) #13
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00530000063666.b.l.a #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a #36
Marmotini	ANCESTRAL SPECIES	58	ENSGT00530000063666.b.l.a #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000153648.a.f	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Alpin marmot	MODERN SPECIES	21	ENSMMMG00000008424	ACOT9 (ENSMMMG00000008333) #10	ENSMMMG00000008328	PRDX4 (ENSMMMG00000008312) #11	ENSMMMG00000008306	PTCHD1 (ENSMMMG00000008301) #12	ENSMMMG00000008274	PHEX (ENSMMMG00000008240) #13	SMS (ENSMMMG00000008225) #14	ENSMMMG00000008215	ENSMMMG00000008211	MBTPS2 (ENSMMMG00000008190) #17	SMPX (ENSMMMG00000008177) #19	KLHL34 (ENSMMMG00000008160) #20	CNKSR2 (ENSMMMG00000008093) #21	RPS6KA3 (ENSMMMG00000008009) #22	EIF1AX (ENSMMMG00000007975) #23	MAP7D2 (ENSMMMG00000007516) #24	ENSMMMG00000007500	BCLAF3 (ENSMMMG00000007465) #25	ENSMMMG00000007426	SH3KBP1 (ENSMMMG00000007298) #26	MAP3K15 (ENSMMMG00000007247) #27	ENSMMMG00000007196 #28	ADGRG2 (ENSMMMG00000006314) #29	PHKA2 (ENSMMMG00000006185) #30	PPEF1 (ENSMMMG00000006165) #31	RS1 (ENSMMMG00000006144) #32	CDKL5 (ENSMMMG00000006110) #33	ENSMMMG00000006089	SCML2 (ENSMMMG00000006071) #34
Marmotini_b	ANCESTRAL SPECIES	69	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b.l.a #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153680.a	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000153648.a.f	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Squirrel	MODERN SPECIES	224	EIF2S3B (ENSSTOG00000007144)	KLHL15 (ENSSTOG00000002209)	CXorf58 (ENSSTOG00000002201) #7	ENSSTOG00000026298	ENSSTOG00000002062 #8	SAT1 (ENSSTOG00000019590) #9	ACOT9 (ENSSTOG00000002034) #10	PRDX4 (ENSSTOG00000002028) #11	PTCHD1 (ENSSTOG00000024846) #12	ENSSTOG00000027719	PHEX (ENSSTOG00000006838) #13	ENSSTOG00000034135 #14	MBTPS2 (ENSSTOG00000010473) #17	SMPX (ENSSTOG00000002549) #19	CNKSR2 (ENSSTOG00000011389) #21	RPS6KA3 (ENSSTOG00000010494) #22	EIF1AX (ENSSTOG00000026117) #23	MAP7D2 (ENSSTOG00000013888) #24	BCLAF3 (ENSSTOG00000020416) #25	ENSSTOG00000031367	SH3KBP1 (ENSSTOG00000024324) #26
Arctic ground squirrel	MODERN SPECIES	319																RPS6KA3 (ENSUPAG00010016233) #22	ENSUPAG00010016262 #23	MAP7D2 (ENSUPAG00010016279) #24	ENSUPAG00010016489	BCLAF3 (ENSUPAG00010016497) #25	SH3KBP1 (ENSUPAG00010016531) #26	MAP3K15 (ENSUPAG00010016860) #27	PDHA1 (ENSUPAG00010016887) #28	ENSUPAG00010016903	ADGRG2 (ENSUPAG00010016925) #29	PHKA2 (ENSUPAG00010017499) #30
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005022952 #8	SAT1 (ENSSVLG00005023019) #9	ACOT9 (ENSSVLG00005023115) #10	ENSSVLG00005023374	PRDX4 (ENSSVLG00005023403) #11	PTCHD1 (ENSSVLG00005023442) #12	ENSSVLG00005023477	PHEX (ENSSVLG00005023506) #13	SMS (ENSSVLG00005023626) #14	ENSSVLG00005023650	ENSSVLG00005023659	MBTPS2 (ENSSVLG00005023689) #17	SMPX (ENSSVLG00005023721) #19	KLHL34 (ENSSVLG00005023744) #20	CNKSR2 (ENSSVLG00005023957) #21	RPS6KA3 (ENSSVLG00005024949) #22	ENSSVLG00005024989 #23	MAP7D2 (ENSSVLG00005025072) #24	ENSSVLG00005025208	ENSSVLG00005025223	BCLAF3 (ENSSVLG00005025243) #25	SH3KBP1 (ENSSVLG00005025277) #26	MAP3K15 (ENSSVLG00005025353) #27	PDHA1 (ENSSVLG00005025396) #28	ENSSVLG00005025413	ADGRG2 (ENSSVLG00005025609) #29	PHKA2 (ENSSVLG00005025821) #30	PPEF1 (ENSSVLG00005025839) #31	RS1 (ENSSVLG00005025848) #32	CDKL5 (ENSSVLG00005025859) #33	SCML2 (ENSSVLG00005025874) #34
Rodentia_B	ANCESTRAL SPECIES	31	ENSGT00940000158684	ENSGT00550000074801.g.b	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Kangaroo rat	MODERN SPECIES	413	Eif2s3y (ENSDORG00000007498)	Klhl15 (ENSDORG00000028113)	Apoo (ENSDORG00000015741) #8	Sat1 (ENSDORG00000028241) #9	ENSDORG00000002910 #10	Prdx4 (ENSDORG00000002908) #11	Ptchd1 (ENSDORG00000004212) #12	Phex (ENSDORG00000010976) #13	ENSDORG00000025753	ENSDORG00000016069 #14	Yy2 (ENSDORG00000011068)	Mbtps2 (ENSDORG00000011065) #17	Smpx (ENSDORG00000003075) #19	Cnksr2 (ENSDORG00000010230) #21	ENSDORG00000029700	Rps6ka3 (ENSDORG00000011802) #22	ENSDORG00000011536 #23	Map7d2 (ENSDORG00000007990) #24	Bclaf3 (ENSDORG00000007988) #25	Sh3kbp1 (ENSDORG00000005919) #26	Map3k15 (ENSDORG00000011849) #27	Pdha1 (ENSDORG00000011848) #28	Adgrg2 (ENSDORG00000003270) #29	ENSDORG00000026958 #30	ENSDORG00000011776 #31
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000158684	ENSGT00550000074801.g.b.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Muroidea	ANCESTRAL SPECIES	30	ENSGT00940000158684	ENSGT00550000074801.g.b.d	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000005717.e.a.b	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.cc.a #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00390000008256.j.a.a #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00940000158538	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.c.a	ENSGT01050000244868.a.a.a.b.a.b.a.a.b.d	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.cc.a #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Golden Hamster	MODERN SPECIES	661						ENSMAUG00000007368	ENSMAUG00000007163	Phex (ENSMAUG00000016421) #13	Sms (ENSMAUG00000017854) #14	Yy2 (ENSMAUG00000016161)	Mbtps2 (ENSMAUG00000017121) #17	Smpx (ENSMAUG00000016078) #19	Cnksr2 (ENSMAUG00000021259) #21	ENSMAUG00000008169	ENSMAUG00000017351	Rps6ka3 (ENSMAUG00000015390) #22	ENSMAUG00000012396 #23	ENSMAUG00000007856	Map7d2 (ENSMAUG00000016214) #24	ENSMAUG00000009356	Sh3kbp1 (ENSMAUG00000017328) #26	Map3k15 (ENSMAUG00000006183) #27	Pdha1 (ENSMAUG00000002413) #28	Adgrg2 (ENSMAUG00000001544) #29	Phka2 (ENSMAUG00000001285) #30	Ppef1 (ENSMAUG00000016981) #31	Rs1 (ENSMAUG00000017955) #32	Gja6 (ENSMAUG00000016764)	Cdkl5 (ENSMAUG00000009424) #33	ENSMAUG00000014559	Rai2 (ENSMAUG00000010443)
Chinese hamster chok1gshd	MODERN SPECIES	230	ENSCGRG00001013899	Cldn34d (ENSCGRG00001014236)	ENSCGRG00001013998	SAT1 (ENSCGRG00001022103) #9	ENSCGRG00001000350 #10	Prdx4 (ENSCGRG00001009299) #11	Ptchd1 (ENSCGRG00001010854) #12	ENSCGRG00001015828	ENSCGRG00001015986	Phex (ENSCGRG00001019759) #13	ENSCGRG00001000646 #14	MBTPS2 (ENSCGRG00001018020) #17	Smpx (ENSCGRG00001020401) #19	Klhl34 (ENSCGRG00001014357) #20	Cnksr2 (ENSCGRG00001022169) #21	Rps6ka3 (ENSCGRG00001007518) #22	ENSCGRG00001022852 #23	Map7d2 (ENSCGRG00001005576) #24	Bclaf3 (ENSCGRG00001017632) #25	Sh3kbp1 (ENSCGRG00001012962) #26	Map3k15 (ENSCGRG00001017037) #27	Pdha1 (ENSCGRG00001020742) #28	ENSCGRG00001020861	Adgrg2 (ENSCGRG00001022355) #29	Phka2 (ENSCGRG00001021729) #30	Ppef1 (ENSCGRG00001015088) #31	Rs1 (ENSCGRG00001017692) #32	Cdkl5 (ENSCGRG00001020755) #33	Scml2 (ENSCGRG00001017848) #34	ENSCGRG00001012613	Rai2 (ENSCGRG00001015408)
Cricetidae_B	ANCESTRAL SPECIES	36	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00390000005717.e.b.a	ENSGT00390000005717.e.b.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506.cc.a #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.a.a #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Prairie vole	MODERN SPECIES	360	Sat1 (ENSMOCG00000012276) #9	ENSMOCG00000002108 #10	Prdx4 (ENSMOCG00000014602) #11	Ptchd1 (ENSMOCG00000020483) #12	ENSMOCG00000017700	ENSMOCG00000012478	ENSMOCG00000006009	Phex (ENSMOCG00000021326) #13	Sms (ENSMOCG00000016092) #14	Yy2 (ENSMOCG00000013780)	Mbtps2 (ENSMOCG00000016533) #17	Smpx (ENSMOCG00000009712) #19	Cnksr2 (ENSMOCG00000000158) #21	ENSMOCG00000017907	ENSMOCG00000016797	Rps6ka3 (ENSMOCG00000012164) #22	ENSMOCG00000013551 #23	ENSMOCG00000004138	Map7d2 (ENSMOCG00000019149) #24	Bclaf3 (ENSMOCG00000005833) #25	Sh3kbp1 (ENSMOCG00000020425) #26	Map3k15 (ENSMOCG00000013071) #27	Pdha1 (ENSMOCG00000002601) #28	Adgrg2 (ENSMOCG00000011315) #29	Phka2 (ENSMOCG00000021208) #30	Ppef1 (ENSMOCG00000019014) #31	Rs1 (ENSMOCG00000012992) #32	Cdkl5 (ENSMOCG00000014110) #33	Scml2 (ENSMOCG00000004081) #34	Bend2 (ENSMOCG00000002447)	Rai2 (ENSMOCG00000020088)
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000025993	Sat1 (ENSPEMG00000001319) #9	ENSPEMG00000002650 #10	ENSPEMG00000028779	ENSPEMG00000017644	Prdx4 (ENSPEMG00000015131) #11	Ptchd1 (ENSPEMG00000024561) #12	Phex (ENSPEMG00000017527) #13	Sms (ENSPEMG00000003756) #14	Mbtps2 (ENSPEMG00000012008) #17	ENSPEMG00000026716	Smpx (ENSPEMG00000011852) #19	Klhl34 (ENSPEMG00000026377) #20	Cnksr2 (ENSPEMG00000012770) #21	ENSPEMG00000026965	Rps6ka3 (ENSPEMG00000018584) #22	ENSPEMG00000026098 #23	Map7d2 (ENSPEMG00000000311) #24	Bclaf3 (ENSPEMG00000008136) #25	Sh3kbp1 (ENSPEMG00000007129) #26	Map3k15 (ENSPEMG00000012858) #27	Pdha1 (ENSPEMG00000008945) #28	ENSPEMG00000026878	Adgrg2 (ENSPEMG00000001110) #29	Phka2 (ENSPEMG00000004706) #30	Ppef1 (ENSPEMG00000012697) #31	Rs1 (ENSPEMG00000008058) #32	Cdkl5 (ENSPEMG00000002138) #33	ENSPEMG00000030730 #34	Bend2 (ENSPEMG00000011757)	Rai2 (ENSPEMG00000008659)
Murinae	ANCESTRAL SPECIES	32						ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Mus	ANCESTRAL SPECIES	9	ENSGT00520000056155.g.b.a.b	ENSGT00520000056155.g.a.c.a	ENSGT00390000005717.e.b.b.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00860000136365	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Mus_A	ANCESTRAL SPECIES	15	ENSGT00520000056155.g.b.a.b	ENSGT00520000056155.g.a.c.a	ENSGT00390000005717.e.b.b.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00860000136365	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370 #22	ENSGT00390000008256.j.a.a #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Mus_B	ANCESTRAL SPECIES	14	ENSGT00520000056155.g.b.a.a	ENSGT00520000056155.g.a.c.a.a	ENSGT00390000005717.e.b.b.a.f	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330.bb #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00860000136365	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370 #22	ENSGT00390000008256.j.b #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36
Mouse	MODERN SPECIES	37	Magea5 (ENSMUSG00000079349)	Magea1 (ENSMUSG00000096644)	Cldn34b2 (ENSMUSG00000057402)	Sat1 (ENSMUSG00000025283) #9	Acot9 (ENSMUSG00000025287) #10	Prdx4 (ENSMUSG00000025289) #11	Ptchd1 (ENSMUSG00000041552) #12	Gm15155 (ENSMUSG00000055109)	Phex (ENSMUSG00000057457) #13	Sms (ENSMUSG00000071708) #14	Mbtps2 (ENSMUSG00000046873) #17	Yy2 (ENSMUSG00000091736)	Smpx (ENSMUSG00000041476) #19	Klhl34 (ENSMUSG00000047485) #20	Cnksr2 (ENSMUSG00000025658) #21	Rps6ka3 (ENSMUSG00000031309) #22	Eif1ax (ENSMUSG00000067194) #23	Map7d2 (ENSMUSG00000041020) #24	Bclaf3 (ENSMUSG00000044150) #25	Sh3kbp1 (ENSMUSG00000040990) #26	Map3k15 (ENSMUSG00000031303) #27	Pdha1 (ENSMUSG00000031299) #28	Adgrg2 (ENSMUSG00000031298) #29	Phka2 (ENSMUSG00000031295) #30	Ppef1 (ENSMUSG00000062168) #31	Rs1 (ENSMUSG00000031293) #32	Cdkl5 (ENSMUSG00000031292) #33	Gja6 (ENSMUSG00000055691)	Scml2 (ENSMUSG00000000037) #34	Bend2 (ENSMUSG00000108981)	Rai2 (ENSMUSG00000043518)
Mus_C	ANCESTRAL SPECIES	22	ENSGT00940000163673	ENSGT00390000004891	ENSGT00950000182925.D.a.b.a.a.a.b.a.a	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330.bb #10	ENSGT00940000153430.a.a #11	ENSGT00940000157080 #12	ENSGT00860000136365	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370 #22	ENSGT00390000008256.j.a.a #23	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000154164.d	ENSGT00950000182963.b.a #36	ENSGT00940000158080 #37
spretus	MODERN SPECIES	19	Spin2c (MGP_SPRETEiJ_G0034685)	Samt4 (MGP_SPRETEiJ_G0034686)	Sat1 (MGP_SPRETEiJ_G0034687) #9	Acot9 (MGP_SPRETEiJ_G0034688) #10	Prdx4 (MGP_SPRETEiJ_G0034689) #11	Ptchd1 (MGP_SPRETEiJ_G0034690) #12	MGP_SPRETEiJ_G0034691	Phex (MGP_SPRETEiJ_G0034692) #13	Sms (MGP_SPRETEiJ_G0034693) #14	Mbtps2 (MGP_SPRETEiJ_G0034694) #17	Yy2 (MGP_SPRETEiJ_G0034695)	Smpx (MGP_SPRETEiJ_G0034696) #19	Klhl34 (MGP_SPRETEiJ_G0034697) #20	Cnksr2 (MGP_SPRETEiJ_G0034698) #21	MGP_SPRETEiJ_G0034699	Rps6ka3 (MGP_SPRETEiJ_G0034700) #22	MGP_SPRETEiJ_G0034701 #23	Map7d2 (MGP_SPRETEiJ_G0034702) #24	Bclaf3 (MGP_SPRETEiJ_G0034703) #25	Sh3kbp1 (MGP_SPRETEiJ_G0034704) #26	Map3k15 (MGP_SPRETEiJ_G0034705) #27	Pdha1 (MGP_SPRETEiJ_G0034706) #28	Adgrg2 (MGP_SPRETEiJ_G0034707) #29	Phka2 (MGP_SPRETEiJ_G0034708) #30	Ppef1 (MGP_SPRETEiJ_G0034709) #31	Rs1 (MGP_SPRETEiJ_G0034710) #32	Cdkl5 (MGP_SPRETEiJ_G0034711) #33	Gja6 (MGP_SPRETEiJ_G0034712)	MGP_SPRETEiJ_G0034713 #34	Rai2 (MGP_SPRETEiJ_G0034714)	Nhs (MGP_SPRETEiJ_G0034715) #36
Steppe mouse	MODERN SPECIES	1768																Rps6ka3 (ENSMSIG00000026509) #22
Ryukyu mouse	MODERN SPECIES	19	Spin2c (MGP_CAROLIEiJ_G0033515)	Sat1 (MGP_CAROLIEiJ_G0033516) #9	MGP_CAROLIEiJ_G0033517 #10	MGP_CAROLIEiJ_G0033518 #10	Prdx4 (MGP_CAROLIEiJ_G0033519) #11	Ptchd1 (MGP_CAROLIEiJ_G0033520) #12	MGP_CAROLIEiJ_G0033521	Phex (MGP_CAROLIEiJ_G0033522) #13	Sms (MGP_CAROLIEiJ_G0033523) #14	Mbtps2 (MGP_CAROLIEiJ_G0033524) #17	Yy2 (MGP_CAROLIEiJ_G0033525)	Smpx (MGP_CAROLIEiJ_G0033526) #19	Klhl34 (MGP_CAROLIEiJ_G0033527) #20	Cnksr2 (MGP_CAROLIEiJ_G0033528) #21	MGP_CAROLIEiJ_G0033529	Rps6ka3 (MGP_CAROLIEiJ_G0033530) #22	MGP_CAROLIEiJ_G0033531 #23	Map7d2 (MGP_CAROLIEiJ_G0033532) #24	Bclaf3 (MGP_CAROLIEiJ_G0033533) #25	Sh3kbp1 (MGP_CAROLIEiJ_G0033534) #26	Map3k15 (MGP_CAROLIEiJ_G0033535) #27	Pdha1 (MGP_CAROLIEiJ_G0033536) #28	Adgrg2 (MGP_CAROLIEiJ_G0033537) #29	Phka2 (MGP_CAROLIEiJ_G0033538) #30	Ppef1 (MGP_CAROLIEiJ_G0033539) #31	Rs1 (MGP_CAROLIEiJ_G0033540) #32	Cdkl5 (MGP_CAROLIEiJ_G0033541) #33	Gja6 (MGP_CAROLIEiJ_G0033542)	MGP_CAROLIEiJ_G0033543 #34	Rai2 (MGP_CAROLIEiJ_G0033544)	Nhs (MGP_CAROLIEiJ_G0033545) #36
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0032054	MGP_PahariEiJ_G0032055	MGP_PahariEiJ_G0032056	Sat1 (MGP_PahariEiJ_G0032057) #9	Prdx4 (MGP_PahariEiJ_G0032058) #11	Ptchd1 (MGP_PahariEiJ_G0032059) #12	MGP_PahariEiJ_G0032060	Phex (MGP_PahariEiJ_G0032061) #13	Sms (MGP_PahariEiJ_G0032062) #14	Mbtps2 (MGP_PahariEiJ_G0032063) #17	Yy2 (MGP_PahariEiJ_G0032064)	Smpx (MGP_PahariEiJ_G0032065) #19	Klhl34 (MGP_PahariEiJ_G0032066) #20	Cnksr2 (MGP_PahariEiJ_G0032067) #21	MGP_PahariEiJ_G0032068	Rps6ka3 (MGP_PahariEiJ_G0032069) #22	MGP_PahariEiJ_G0032070 #23	Map7d2 (MGP_PahariEiJ_G0032071) #24	Bclaf3 (MGP_PahariEiJ_G0032072) #25	Sh3kbp1 (MGP_PahariEiJ_G0032073) #26	Map3k15 (MGP_PahariEiJ_G0032074) #27	Pdha1 (MGP_PahariEiJ_G0032075) #28	Adgrg2 (MGP_PahariEiJ_G0032076) #29	Phka2 (MGP_PahariEiJ_G0032077) #30	Ppef1 (MGP_PahariEiJ_G0032078) #31	Rs1 (MGP_PahariEiJ_G0032079) #32	Cdkl5 (MGP_PahariEiJ_G0032080) #33	Gja6 (MGP_PahariEiJ_G0032081)	MGP_PahariEiJ_G0032082 #34	Rai2 (MGP_PahariEiJ_G0032083)	Nhs (MGP_PahariEiJ_G0032084) #36
Rat	MODERN SPECIES	46	Prdx4 (ENSRNOG00000003763) #11	Magea8 (ENSRNOG00000066429)	ENSRNOG00000067126	Ptchd1 (ENSRNOG00000069252) #12	ENSRNOG00000064829	LOC100361934 (ENSRNOG00000034182)	ENSRNOG00000067646	Phex (ENSRNOG00000023440) #13	Sms (ENSRNOG00000007688) #14	Yy2 (ENSRNOG00000007644) #17	ENSRNOG00000068938	Smpx (ENSRNOG00000007495) #19	Klhl34 (ENSRNOG00000024479) #20	Cnksr2 (ENSRNOG00000007014) #21	ENSRNOG00000062879	Rps6ka3 (ENSRNOG00000006632) #22	Eif1ax (ENSRNOG00000005736) #23	Map7d2 (ENSRNOG00000005176) #24	Bclaf3 (ENSRNOG00000005135) #25	Sh3kbp1 (ENSRNOG00000004322) #26	ENSRNOG00000066262	Map3k15 (ENSRNOG00000025290) #27	Pdha1 (ENSRNOG00000025383) #28	Lamtor1 (ENSRNOG00000004319)	ENSRNOG00000069571	Rps27a-ps5 (ENSRNOG00000032132)	Adgrg2 (ENSRNOG00000032472) #29	AABR07037995.1 (ENSRNOG00000003949) #30	Ppef1 (ENSRNOG00000027331) #31	ENSRNOG00000065877	Rs1 (ENSRNOG00000030434) #32
Upper Galilee mountains blind mole rat	MODERN SPECIES	931															Cnksr2 (ENSNGAG00000009070) #21	Rps6ka3 (ENSNGAG00000019940) #22	Eif1ax (ENSNGAG00000018551) #23	Map7d2 (ENSNGAG00000016712) #24	Bclaf3 (ENSNGAG00000015524) #25	Sh3kbp1 (ENSNGAG00000021155) #26	Map3k15 (ENSNGAG00000018804) #27	Pdha1 (ENSNGAG00000015013) #28	Adgrg2 (ENSNGAG00000011202) #29	ENSNGAG00000017231 #30	Ppef1 (ENSNGAG00000014571) #31	Rs1 (ENSNGAG00000010391) #32	Cdkl5 (ENSNGAG00000010787) #33
Lesser Egyptian jerboa	MODERN SPECIES	192									Smpx (ENSJJAG00000015249) #19	Cnksr2 (ENSJJAG00000016115) #21	ENSJJAG00000011807	ENSJJAG00000016309	ENSJJAG00000016365	ENSJJAG00000016502	ENSJJAG00000011798	Rps6ka3 (ENSJJAG00000016899) #22	Eif1ax (ENSJJAG00000016949) #23	Map7d2 (ENSJJAG00000017202) #24	Tmem47 (ENSJJAG00000017721)	ENSJJAG00000018035
Lagomorpha	ANCESTRAL SPECIES	49	ENSGT00940000159116	ENSGT00510000048637 #7	ENSGT00530000063666.b #8	ENSGT00950000183121.b.b.b.b #9	ENSGT00390000005330 #10	ENSGT00940000153430.a.a #11	ENSGT00950000185291	ENSGT00940000157080 #12	ENSGT00940000164183	ENSGT00940000157313 #13	ENSGT00870000136506 #14	ENSGT00510000048066 #17	ENSGT00390000017542 #19	ENSGT00940000162424 #20	ENSGT00940000156709 #21	ENSGT00940000159370 #22	ENSGT00950000182941.b.b #24	ENSGT00950000183163.b #25	ENSGT00940000155886 #26	ENSGT00940000159562 #27	ENSGT00530000063174.a.i #28	ENSGT00940000156341 #29	ENSGT00950000183118.A.c.a #30	ENSGT00940000159830 #31	ENSGT00940000161181 #32	ENSGT00940000157355 #33	ENSGT00940000159407 #34	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165 #35	ENSGT00950000182963.b.a #36
Rabbit	MODERN SPECIES	1401	ENSOCUG00000009645 #9	ACOT9 (ENSOCUG00000004779) #10	PRDX4 (ENSOCUG00000004786) #11	ENSOCUG00000037984	ENSOCUG00000022336	ENSOCUG00000032925	PTCHD1 (ENSOCUG00000014375) #12	ENSOCUG00000004437	PHEX (ENSOCUG00000006020) #13	SMS (ENSOCUG00000006016) #14	MBTPS2 (ENSOCUG00000016386) #17	SMPX (ENSOCUG00000001849) #19	KLHL34 (ENSOCUG00000014678) #20	CNKSR2 (ENSOCUG00000014660) #21	ENSOCUG00000027568	RPS6KA3 (ENSOCUG00000025948) #22	MAP7D2 (ENSOCUG00000016736) #24	BCLAF3 (ENSOCUG00000015294) #25	SH3KBP1 (ENSOCUG00000006268) #26	MAP3K15 (ENSOCUG00000014758) #27	PDHA1 (ENSOCUG00000014748) #28	ADGRG2 (ENSOCUG00000007324) #29	PPEF1 (ENSOCUG00000010801) #31	PHKA2 (ENSOCUG00000013782) #30	RS1 (ENSOCUG00000010796) #32	CDKL5 (ENSOCUG00000010775) #33	SCML2 (ENSOCUG00000007351) #34	ENSOCUG00000013622	RAI2 (ENSOCUG00000026517)	ENSOCUG00000021853 #35	ENSOCUG00000028121