Mus_A	ANCESTRAL SPECIES	3	ENSGT01030000234573.A.b.a #7	ENSGT00940000156209 #8	ENSGT00940000154396.b.b #9	ENSGT00940000160185 #10	ENSGT00940000156301 #11	ENSGT00940000155190 #12	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b #13	ENSGT01030000234531.A.b.a.a #14	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a #15	ENSGT01030000234531.A.b.a.b #16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728 #24	ENSGT00940000157568 #25	ENSGT00940000162256 #26	ENSGT00940000153947.B #27	ENSGT00940000155542.b #28	ENSGT00390000015466 #29	ENSGT00390000004336 #30	ENSGT00940000153733.B #31	ENSGT00940000161645.b #32	ENSGT00860000136250 #33	ENSGT00530000063000.a.a.a #34	ENSGT00940000156746 #35	ENSGT00940000155661 #36	ENSGT00910000144243 #37
Ryukyu mouse	MODERN SPECIES	13	Mier1 (MGP_CAROLIEiJ_G0026218) #7	Dnai4 (MGP_CAROLIEiJ_G0026217) #8	Insl5 (MGP_CAROLIEiJ_G0026216) #9	MGP_CAROLIEiJ_G0026215 #10	Sgip1 (MGP_CAROLIEiJ_G0026214) #11	Pde4b (MGP_CAROLIEiJ_G0026213) #12	Gm12789 (MGP_CAROLIEiJ_G0026212) #13	MGP_CAROLIEiJ_G0026211 #14	MGP_CAROLIEiJ_G0026210 #15	C130073F10Rik (MGP_CAROLIEiJ_G0026209) #16	MGP_CAROLIEiJ_G0026208 #17	Lepr (MGP_CAROLIEiJ_G0026207) #18	Leprot (MGP_CAROLIEiJ_G0026206) #19	Dnajc6 (MGP_CAROLIEiJ_G0026205) #20	Ak4 (MGP_CAROLIEiJ_G0026204) #21	Jak1 (MGP_CAROLIEiJ_G0026203) #22	Raver2 (MGP_CAROLIEiJ_G0026202) #23	MGP_CAROLIEiJ_G0026201 #24	Cachd1 (MGP_CAROLIEiJ_G0026200) #25	Ube2u (MGP_CAROLIEiJ_G0026199) #26	Ror1 (MGP_CAROLIEiJ_G0026198) #27	Pgm1 (MGP_CAROLIEiJ_G0026197) #28	MGP_CAROLIEiJ_G0026196 #29	Itgb3bp (MGP_CAROLIEiJ_G0026195) #30	Alg6 (MGP_CAROLIEiJ_G0026194) #31	Foxd3 (MGP_CAROLIEiJ_G0026193) #32	MGP_CAROLIEiJ_G0026192 #33	Atg4c (MGP_CAROLIEiJ_G0026191) #34	Angptl3 (MGP_CAROLIEiJ_G0026190) #35	Dock7 (MGP_CAROLIEiJ_G0026189) #36	MGP_CAROLIEiJ_G0026188 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT01030000234573.A.b.a #7	ENSGT00940000156209 #8	ENSGT00940000154396.b.b #9	ENSGT00940000160185 #10	ENSGT00940000156301 #11	ENSGT00940000155190 #12	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b #13	ENSGT01030000234531.A.b.a.a #14	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a #15	ENSGT01030000234531.A.b.a.b #16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728 #24	ENSGT00940000157568 #25	ENSGT00940000162256 #26	ENSGT00940000153947.B #27	ENSGT00940000155542.b #28	ENSGT00390000015466 #29	ENSGT00390000004336 #30	ENSGT00940000153733.B #31	ENSGT00940000161645.b #32	ENSGT00860000136250 #33	ENSGT00530000063000.a.a.a #34	ENSGT00940000156746 #35	ENSGT00940000155661 #36	ENSGT00910000144243 #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a #7	ENSGT00940000156209 #8	ENSGT00940000154396.b.b #9	ENSGT00940000160185 #10	ENSGT00940000156301 #11	ENSGT00940000155190 #12	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a #15	ENSGT01030000234531.A.b.a.b #16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728 #24	ENSGT00940000157568 #25	ENSGT00940000162256 #26	ENSGT00940000153947.B #27	ENSGT00940000155542.b #28	ENSGT00390000015466 #29	ENSGT00390000004336 #30	ENSGT00940000153733.B #31	ENSGT00940000161645.b #32	ENSGT00860000136250 #33	ENSGT00530000063000.a.a.a #34	ENSGT00940000156746 #35	ENSGT00940000155661 #36	ENSGT00910000144243 #37
Steppe mouse	MODERN SPECIES	2743																Jak1 (ENSMSIG00000032175) #22	Raver2 (ENSMSIG00000032177) #23	ENSMSIG00000032179 #24	Cachd1 (ENSMSIG00000032180) #25	Ube2u (ENSMSIG00000032183) #26	ENSMSIG00000032184 #27
spretus	MODERN SPECIES	13	Mier1 (MGP_SPRETEiJ_G0027187) #7	Dnai4 (MGP_SPRETEiJ_G0027186) #8	Insl5 (MGP_SPRETEiJ_G0027185) #9	Dynlt5 (MGP_SPRETEiJ_G0027184) #10	Sgip1 (MGP_SPRETEiJ_G0027183) #11	Pde4b (MGP_SPRETEiJ_G0027182) #12	MGP_SPRETEiJ_G0027181	MGP_SPRETEiJ_G0027180 #15	MGP_SPRETEiJ_G0027179 #14	C130073F10Rik (MGP_SPRETEiJ_G0027178) #16	MGP_SPRETEiJ_G0027177 #17	Lepr (MGP_SPRETEiJ_G0027176) #18	Leprot (MGP_SPRETEiJ_G0027175) #19	Dnajc6 (MGP_SPRETEiJ_G0027174) #20	Ak4 (MGP_SPRETEiJ_G0027173) #21	Jak1 (MGP_SPRETEiJ_G0027172) #22	Raver2 (MGP_SPRETEiJ_G0027171) #23	MGP_SPRETEiJ_G0027170 #24	Cachd1 (MGP_SPRETEiJ_G0027169) #25	Ube2u (MGP_SPRETEiJ_G0027168) #26	Ror1 (MGP_SPRETEiJ_G0027167) #27	Pgm1 (MGP_SPRETEiJ_G0027166) #28	Efcab7 (MGP_SPRETEiJ_G0027165) #29	Itgb3bp (MGP_SPRETEiJ_G0027164) #30	Alg6 (MGP_SPRETEiJ_G0027163) #31	Foxd3 (MGP_SPRETEiJ_G0027162) #32	MGP_SPRETEiJ_G0027160 #33	Atg4c (MGP_SPRETEiJ_G0027159) #34	Angptl3 (MGP_SPRETEiJ_G0027158) #35	Dock7 (MGP_SPRETEiJ_G0027157) #36	MGP_SPRETEiJ_G0027156 #37
Mouse	MODERN SPECIES	13	Dnai4 (ENSMUSG00000035126) #8	Insl5 (ENSMUSG00000066090) #9	Dynlt5 (ENSMUSG00000028523) #10	Sgip1 (ENSMUSG00000028524) #11	Pde4b (ENSMUSG00000028525) #12	Gm12789 (ENSMUSG00000078625) #13	Gm12790 (ENSMUSG00000078626) #14	Pramel19 (ENSMUSG00000070890) #15	Pramel18 (ENSMUSG00000037028) #15	C130073F10Rik (ENSMUSG00000046133) #16	Pramel17 (ENSMUSG00000035201) #17	Lepr (ENSMUSG00000057722) #18	Leprot (ENSMUSG00000035212) #19	Dnajc6 (ENSMUSG00000028528) #20	Ak4 (ENSMUSG00000028527) #21	Jak1 (ENSMUSG00000028530) #22	Raver2 (ENSMUSG00000035275) #23	Cachd1 (ENSMUSG00000028532) #25	Ube2u (ENSMUSG00000069733) #26	Ror1 (ENSMUSG00000035305) #27	Pgm1 (ENSMUSG00000025791) #28	Efcab7 (ENSMUSG00000073791) #29	Itgb3bp (ENSMUSG00000028549) #30	Alg6 (ENSMUSG00000073792) #31	Foxd3 (ENSMUSG00000067261) #32	Atg4c (ENSMUSG00000028550) #34	Angptl3 (ENSMUSG00000028553) #35	Dock7 (ENSMUSG00000028556) #36	Usp1 (ENSMUSG00000028560) #37	I0C0044D17Rik (ENSMUSG00000073794)	Kank4 (ENSMUSG00000035407)