Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00520000055591.a #7	ENSGT00940000159829 #8	ENSGT00530000064198 #9	ENSGT00390000010146 #10	ENSGT00940000155665.j #11	ENSGT01030000234573.A.b.a #12	ENSGT00940000156209 #13	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301 #16	ENSGT00940000155190 #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256	ENSGT00940000153947.B #25	ENSGT00940000155542.b #26	ENSGT00390000015466 #27	ENSGT00390000004336 #28	ENSGT00940000153733.B #29	ENSGT00940000161645.b	ENSGT00530000063000.a.a.a #30	ENSGT00940000155661 #31	ENSGT00940000156746 #32	ENSGT00910000144243 #33	ENSGT00940000158468 #34	ENSGT01050000244818 #35
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00520000055591.a #7	ENSGT00940000159829 #8	ENSGT00530000064198 #9	ENSGT00390000010146 #10	ENSGT00940000155665.j #11	ENSGT01030000234573.A.b.a #12	ENSGT00940000156209 #13	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301 #16	ENSGT00940000155190 #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256	ENSGT00940000153947.B #25	ENSGT00940000155542.b #26	ENSGT00390000015466 #27	ENSGT00390000004336 #28	ENSGT00940000153733.B #29	ENSGT00530000063000.a.a.a #30	ENSGT00940000155661 #31	ENSGT00940000156746 #32	ENSGT00910000144243 #33	ENSGT00940000158468 #34	ENSGT01050000244818 #35	ENSGT00940000155136 #36
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00520000055591.a.cb #7	ENSGT00940000159829 #8	ENSGT00530000064198 #9	ENSGT00390000010146 #10	ENSGT00940000155665.j #11	ENSGT01030000234573.A.b.a #12	ENSGT00940000156209 #13	ENSGT01030000235815 #14	ENSGT00940000160185	ENSGT00940000156301 #16	ENSGT00940000155190 #17	ENSGT00730000111209 #18	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256	ENSGT00940000153947.B #25	ENSGT00940000155542.b #26	ENSGT00390000015466 #27	ENSGT00390000004336 #28	ENSGT00940000153733.B #29	ENSGT00530000063000.a.a.a #30	ENSGT00940000156746 #32	ENSGT00940000155661 #31	ENSGT00910000144243 #33	ENSGT00940000158468 #34	ENSGT01050000244818 #35	ENSGT00940000155136 #36
Long-tailed chinchilla	MODERN SPECIES	130	SERBP1 (ENSCLAG00000007459) #7	ENSCLAG00000008496 #8	IL23R (ENSCLAG00000008594) #9	ENSCLAG00000005867 #10	SLC35D1 (ENSCLAG00000006519) #11	MIER1 (ENSCLAG00000006851) #12	ENSCLAG00000007749 #13	ENSCLAG00000004621 #14	ENSCLAG00000004647 #15	SGIP1 (ENSCLAG00000005269) #16	PDE4B (ENSCLAG00000006409) #17	LEPR (ENSCLAG00000016236) #18	LEPROT (ENSCLAG00000008136) #19	DNAJC6 (ENSCLAG00000008413) #20	ENSCLAG00000005491 #21	JAK1 (ENSCLAG00000006227) #22	RAVER2 (ENSCLAG00000006590) #23	CACHD1 (ENSCLAG00000007901) #24	ROR1 (ENSCLAG00000010126) #25	PGM1 (ENSCLAG00000008744) #26	EFCAB7 (ENSCLAG00000009320) #27	ITGB3BP (ENSCLAG00000004361) #28	ENSCLAG00000005099 #29	ATG4C (ENSCLAG00000005419) #30	DOCK7 (ENSCLAG00000006534) #31	ANGPTL3 (ENSCLAG00000011792) #32	USP1 (ENSCLAG00000009389) #33	KANK4 (ENSCLAG00000004374) #34	ENSCLAG00000005428 #35	PATJ (ENSCLAG00000005694) #36	TM2D1 (ENSCLAG00000005321) #37
Degu	MODERN SPECIES	98	ENSODEG00000006396	SLC35D1 (ENSODEG00000005492) #11	ENSODEG00000004802 #12	DNAI4 (ENSODEG00000005891) #13	ENSODEG00000005348 #14	DYNLT5 (ENSODEG00000006520)	SGIP1 (ENSODEG00000005002) #16	ENSODEG00000005863	PDE4B (ENSODEG00000004887) #17	LEPR (ENSODEG00000005568) #18	ENSODEG00000019195	LEPROT (ENSODEG00000006321) #19	ENSODEG00000006173 #20	ENSODEG00000006986	ENSODEG00000006541 #21	JAK1 (ENSODEG00000004472) #22	RAVER2 (ENSODEG00000005253) #23	CACHD1 (ENSODEG00000004991) #24	ENSODEG00000004610	ROR1 (ENSODEG00000004832) #25	ENSODEG00000005033	PGM1 (ENSODEG00000005752) #26	ENSODEG00000005465 #27	ENSODEG00000019103	ITGB3BP (ENSODEG00000005479) #28	ENSODEG00000005048 #29	ATG4C (ENSODEG00000005462) #30	ENSODEG00000019085	ANGPTL3 (ENSODEG00000005471) #32	ENSODEG00000005344	DOCK7 (ENSODEG00000004836) #31
Guinea pig	MODERN SPECIES	2	GNG12 (ENSCPOG00000036301)	GADD45A (ENSCPOG00000005810)	SERBP1 (ENSCPOG00000020069) #7	ENSCPOG00000027017 #10	SLC35D1 (ENSCPOG00000030853) #11	MIER1 (ENSCPOG00000014165) #12	ENSCPOG00000014157 #13	INSL5 (ENSCPOG00000011735)	DYNLT5 (ENSCPOG00000014156)	SGIP1 (ENSCPOG00000012044) #16	PDE4B (ENSCPOG00000011698) #17	LEPR (ENSCPOG00000015030) #18	LEPROT (ENSCPOG00000033712) #19	DNAJC6 (ENSCPOG00000008733) #20	ENSCPOG00000037978 #21	JAK1 (ENSCPOG00000005991) #22	RAVER2 (ENSCPOG00000005986) #23	CACHD1 (ENSCPOG00000011700) #24	ENSCPOG00000010304	ROR1 (ENSCPOG00000034531) #25	PGM1 (ENSCPOG00000022261) #26	EFCAB7 (ENSCPOG00000015458) #27	ITGB3BP (ENSCPOG00000034564) #28	ALG6 (ENSCPOG00000005163) #29	ATG4C (ENSCPOG00000001607) #30	DOCK7 (ENSCPOG00000006170) #31	ENSCPOG00000027140	ANGPTL3 (ENSCPOG00000006192) #32	USP1 (ENSCPOG00000010416) #33	KANK4 (ENSCPOG00000039764) #34	PATJ (ENSCPOG00000024891) #36
Naked mole-rat female	MODERN SPECIES	10	SLC35D1 (ENSHGLG00000007417) #11	MIER1 (ENSHGLG00000008072) #12	DNAI4 (ENSHGLG00000008391) #13	ENSHGLG00000037538	INSL5 (ENSHGLG00000038941)	DYNLT5 (ENSHGLG00000011534)	SGIP1 (ENSHGLG00000012915) #16	PDE4B (ENSHGLG00000015509) #17	ENSHGLG00000041770 #35	ENSHGLG00000042860	LEPR (ENSHGLG00000017191) #18	LEPROT (ENSHGLG00000017601) #19	DNAJC6 (ENSHGLG00000018610) #20	ENSHGLG00000047181	ENSHGLG00000038659 #21	JAK1 (ENSHGLG00000018566) #22	RAVER2 (ENSHGLG00000018409) #23	ENSHGLG00000020728	CACHD1 (ENSHGLG00000018425) #24	ENSHGLG00000040093	ENSHGLG00000050985	ROR1 (ENSHGLG00000017565) #25	ENSHGLG00000042916	PGM1 (ENSHGLG00000017576) #26	EFCAB7 (ENSHGLG00000017587) #27	ENSHGLG00000017596 #28	ALG6 (ENSHGLG00000018273) #29	FOXD3 (ENSHGLG00000043312)	ENSHGLG00000042394	ATG4C (ENSHGLG00000046412) #30	DOCK7 (ENSHGLG00000018341) #31