Rodentia	ANCESTRAL SPECIES		ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818
Rodentia_A	ANCESTRAL SPECIES		ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT00940000155136
Marmotini	ANCESTRAL SPECIES		ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT00940000155136
Marmotini_b	ANCESTRAL SPECIES	206													ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Squirrel	MODERN SPECIES	292													LEPROT (ENSSTOG00000021572) #19	DNAJC6 (ENSSTOG00000011000) #20	ENSSTOG00000023008 #21	JAK1 (ENSSTOG00000012422) #22	RAVER2 (ENSSTOG00000009844) #23	CACHD1 (ENSSTOG00000009821) #24	UBE2U (ENSSTOG00000032996) #25	ROR1 (ENSSTOG00000022807) #26	PGM1 (ENSSTOG00000007561) #27	EFCAB7 (ENSSTOG00000013534) #28	ITGB3BP (ENSSTOG00000030642) #29	ALG6 (ENSSTOG00000024670) #30	FOXD3 (ENSSTOG00000023664) #31	ATG4C (ENSSTOG00000012443) #32	ANGPTL3 (ENSSTOG00000005071) #33	DOCK7 (ENSSTOG00000004984) #34	USP1 (ENSSTOG00000004952) #35	ENSSTOG00000029567 #36
Arctic ground squirrel	MODERN SPECIES	477												LEPR (ENSUPAG00010008544)	LEPROT (ENSUPAG00010008524) #19	DNAJC6 (ENSUPAG00010008302) #20	ENSUPAG00010008284 #21	JAK1 (ENSUPAG00010008239) #22	RAVER2 (ENSUPAG00010008205) #23	CACHD1 (ENSUPAG00010008160) #24
Alpin marmot	MODERN SPECIES	15	IL23R (ENSMMMG00000012144)	C1orf141 (ENSMMMG00000012198)	SLC35D1 (ENSMMMG00000012219)	MIER1 (ENSMMMG00000012235)	ENSMMMG00000012275	ENSMMMG00000012281	INSL5 (ENSMMMG00000012294)	DYNLT5 (ENSMMMG00000012298)	SGIP1 (ENSMMMG00000012312)	PDE4B (ENSMMMG00000012777)	LEPR (ENSMMMG00000013253)	LEPROT (ENSMMMG00000013361) #19	DNAJC6 (ENSMMMG00000013392) #20	ENSMMMG00000013457	ENSMMMG00000013460 #21	JAK1 (ENSMMMG00000013495) #22	RAVER2 (ENSMMMG00000013548) #23	CACHD1 (ENSMMMG00000013619) #24	UBE2U (ENSMMMG00000013711) #25	ROR1 (ENSMMMG00000013738) #26	PGM1 (ENSMMMG00000013759) #27	EFCAB7 (ENSMMMG00000013790) #28	ITGB3BP (ENSMMMG00000013816) #29	ALG6 (ENSMMMG00000013823) #30	ATG4C (ENSMMMG00000013865) #32	DOCK7 (ENSMMMG00000013902) #34	ANGPTL3 (ENSMMMG00000014378) #33	USP1 (ENSMMMG00000014385) #35	PATJ (ENSMMMG00000014420)	ENSMMMG00000014624	ENSMMMG00000014629
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005013884	ENSSVLG00005013815	ENSSVLG00005013677	DNAI4 (ENSSVLG00005013339)	INSL5 (ENSSVLG00005013170)	DYNLT5 (ENSSVLG00005013092)	SGIP1 (ENSSVLG00005012998)	PDE4B (ENSSVLG00005012364)	LEPR (ENSSVLG00005011511)	ENSSVLG00005011368	ENSSVLG00005011213 #19	DNAJC6 (ENSSVLG00005010809) #20	ENSSVLG00005010654 #21	ENSSVLG00005010636	ENSSVLG00005010609	JAK1 (ENSSVLG00005010529) #22	RAVER2 (ENSSVLG00005008615) #23	CACHD1 (ENSSVLG00005008345) #24	ENSSVLG00005008279 #25	ROR1 (ENSSVLG00005008154) #26	ENSSVLG00005008103 #27	ENSSVLG00005008005 #27	EFCAB7 (ENSSVLG00005007917) #28	ITGB3BP (ENSSVLG00005007854) #29	ALG6 (ENSSVLG00005007804) #30	ENSSVLG00005007774	FOXD3 (ENSSVLG00005007758) #31	ENSSVLG00005007744	ATG4C (ENSSVLG00005007673) #32	ENSSVLG00005007657	ENSSVLG00005007631
Hystricomorpha	ANCESTRAL SPECIES	44	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000155661 #34	ENSGT00940000156746 #33	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818
Naked mole-rat female	MODERN SPECIES	10	SLC35D1 (ENSHGLG00000007417)	MIER1 (ENSHGLG00000008072)	DNAI4 (ENSHGLG00000008391)	ENSHGLG00000037538	INSL5 (ENSHGLG00000038941)	DYNLT5 (ENSHGLG00000011534)	SGIP1 (ENSHGLG00000012915)	PDE4B (ENSHGLG00000015509)	ENSHGLG00000041770	ENSHGLG00000042860	LEPR (ENSHGLG00000017191)	LEPROT (ENSHGLG00000017601) #19	DNAJC6 (ENSHGLG00000018610) #20	ENSHGLG00000047181	ENSHGLG00000038659 #21	JAK1 (ENSHGLG00000018566) #22	RAVER2 (ENSHGLG00000018409) #23	ENSHGLG00000020728	CACHD1 (ENSHGLG00000018425) #24	ENSHGLG00000040093	ENSHGLG00000050985	ROR1 (ENSHGLG00000017565) #26	ENSHGLG00000042916	PGM1 (ENSHGLG00000017576) #27	EFCAB7 (ENSHGLG00000017587) #28	ENSHGLG00000017596 #29	ALG6 (ENSHGLG00000018273) #30	FOXD3 (ENSHGLG00000043312) #31	ENSHGLG00000042394	ATG4C (ENSHGLG00000046412) #32	DOCK7 (ENSHGLG00000018341) #34
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00530000063000.a.a.a #32	ENSGT00940000155661 #34	ENSGT00940000156746 #33	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818	ENSGT00940000155136
Guinea pig	MODERN SPECIES	2	GNG12 (ENSCPOG00000036301)	GADD45A (ENSCPOG00000005810)	SERBP1 (ENSCPOG00000020069)	ENSCPOG00000027017	SLC35D1 (ENSCPOG00000030853)	MIER1 (ENSCPOG00000014165)	ENSCPOG00000014157	INSL5 (ENSCPOG00000011735)	DYNLT5 (ENSCPOG00000014156)	SGIP1 (ENSCPOG00000012044)	PDE4B (ENSCPOG00000011698)	LEPR (ENSCPOG00000015030)	LEPROT (ENSCPOG00000033712) #19	DNAJC6 (ENSCPOG00000008733) #20	ENSCPOG00000037978 #21	JAK1 (ENSCPOG00000005991) #22	RAVER2 (ENSCPOG00000005986) #23	CACHD1 (ENSCPOG00000011700) #24	ENSCPOG00000010304 #25	ROR1 (ENSCPOG00000034531) #26	PGM1 (ENSCPOG00000022261) #27	EFCAB7 (ENSCPOG00000015458) #28	ITGB3BP (ENSCPOG00000034564) #29	ALG6 (ENSCPOG00000005163) #30	ATG4C (ENSCPOG00000001607) #32	DOCK7 (ENSCPOG00000006170) #34	ENSCPOG00000027140	ANGPTL3 (ENSCPOG00000006192) #33	USP1 (ENSCPOG00000010416) #35	KANK4 (ENSCPOG00000039764)	PATJ (ENSCPOG00000024891)
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00520000055591.a.cb	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT01030000235815	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818	ENSGT00940000155136
Long-tailed chinchilla	MODERN SPECIES	130	SERBP1 (ENSCLAG00000007459)	ENSCLAG00000008496	IL23R (ENSCLAG00000008594)	ENSCLAG00000005867	SLC35D1 (ENSCLAG00000006519)	MIER1 (ENSCLAG00000006851)	ENSCLAG00000007749	ENSCLAG00000004621	ENSCLAG00000004647	SGIP1 (ENSCLAG00000005269)	PDE4B (ENSCLAG00000006409)	LEPR (ENSCLAG00000016236)	LEPROT (ENSCLAG00000008136) #19	DNAJC6 (ENSCLAG00000008413) #20	ENSCLAG00000005491 #21	JAK1 (ENSCLAG00000006227) #22	RAVER2 (ENSCLAG00000006590) #23	CACHD1 (ENSCLAG00000007901) #24	ROR1 (ENSCLAG00000010126) #26	PGM1 (ENSCLAG00000008744) #27	EFCAB7 (ENSCLAG00000009320) #28	ITGB3BP (ENSCLAG00000004361) #29	ENSCLAG00000005099 #30	ATG4C (ENSCLAG00000005419) #32	DOCK7 (ENSCLAG00000006534) #34	ANGPTL3 (ENSCLAG00000011792) #33	USP1 (ENSCLAG00000009389) #35	KANK4 (ENSCLAG00000004374)	ENSCLAG00000005428	PATJ (ENSCLAG00000005694)	TM2D1 (ENSCLAG00000005321)
Degu	MODERN SPECIES	98	ENSODEG00000006396	SLC35D1 (ENSODEG00000005492)	ENSODEG00000004802	DNAI4 (ENSODEG00000005891)	ENSODEG00000005348	DYNLT5 (ENSODEG00000006520)	SGIP1 (ENSODEG00000005002)	ENSODEG00000005863	PDE4B (ENSODEG00000004887)	LEPR (ENSODEG00000005568)	ENSODEG00000019195	LEPROT (ENSODEG00000006321) #19	ENSODEG00000006173 #20	ENSODEG00000006986	ENSODEG00000006541 #21	JAK1 (ENSODEG00000004472) #22	RAVER2 (ENSODEG00000005253) #23	CACHD1 (ENSODEG00000004991) #24	ENSODEG00000004610 #25	ROR1 (ENSODEG00000004832) #26	ENSODEG00000005033	PGM1 (ENSODEG00000005752) #27	ENSODEG00000005465 #28	ENSODEG00000019103	ITGB3BP (ENSODEG00000005479) #29	ENSODEG00000005048 #30	ATG4C (ENSODEG00000005462) #32	ENSODEG00000019085	ANGPTL3 (ENSODEG00000005471) #33	ENSODEG00000005344	DOCK7 (ENSODEG00000004836) #34
Rodentia_B	ANCESTRAL SPECIES		ENSGT00520000055591.a	ENSGT00940000159829	ENSGT00530000064198	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468	ENSGT01050000244818
Myomorpha	ANCESTRAL SPECIES	55				ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568.g.a #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568.g.a #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Prairie vole	MODERN SPECIES	1	Dab1 (ENSMOCG00000006254)	Oma1 (ENSMOCG00000017366)	4921539E11Rik (ENSMOCG00000012861)	Slc35d1 (ENSMOCG00000011734)	Mier1 (ENSMOCG00000004857)	Dnai4 (ENSMOCG00000022543)	Insl5 (ENSMOCG00000017365)	Dynlt5 (ENSMOCG00000016376)	Sgip1 (ENSMOCG00000020243)	ENSMOCG00000007698	Pde4b (ENSMOCG00000017467)	Lepr (ENSMOCG00000014570)	Leprot (ENSMOCG00000019296) #19	Dnajc6 (ENSMOCG00000018708) #20	Ak4 (ENSMOCG00000014444) #21	Jak1 (ENSMOCG00000011865) #22	Raver2 (ENSMOCG00000018087) #23	Cachd1 (ENSMOCG00000020004) #24	ENSMOCG00000013769 #25	ENSMOCG00000009548	Ror1 (ENSMOCG00000010797) #26	Pgm1 (ENSMOCG00000011278) #27	Efcab7 (ENSMOCG00000005332) #28	Itgb3bp (ENSMOCG00000020964) #29	Alg6 (ENSMOCG00000007266) #30	Foxd3 (ENSMOCG00000003755) #31	ENSMOCG00000021953	Atg4c (ENSMOCG00000013316) #32	Angptl3 (ENSMOCG00000010506) #33	Dock7 (ENSMOCG00000012407) #34	Usp1 (ENSMOCG00000013703) #35
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000012355	Slc35d1 (ENSPEMG00000024230)	Mier1 (ENSPEMG00000018047)	Dnai4 (ENSPEMG00000023810)	Insl5 (ENSPEMG00000007310)	Dynlt5 (ENSPEMG00000031134)	Sgip1 (ENSPEMG00000023234)	Pde4b (ENSPEMG00000021904)	ENSPEMG00000021391	ENSPEMG00000029823	ENSPEMG00000005306	Lepr (ENSPEMG00000013702)	Leprot (ENSPEMG00000016339) #19	Dnajc6 (ENSPEMG00000010017) #20	Ak4 (ENSPEMG00000016088) #21	Jak1 (ENSPEMG00000004628) #22	Raver2 (ENSPEMG00000001332) #23	Cachd1 (ENSPEMG00000018442) #24	ENSPEMG00000024764	ENSPEMG00000028140 #25	Ror1 (ENSPEMG00000009106) #26	Pgm1 (ENSPEMG00000000464) #27	Efcab7 (ENSPEMG00000018535) #28	Itgb3bp (ENSPEMG00000011292) #29	Alg6 (ENSPEMG00000018498) #30	ENSPEMG00000016606	ENSPEMG00000026760	Atg4c (ENSPEMG00000012725) #32	Angptl3 (ENSPEMG00000000689) #33	Dock7 (ENSPEMG00000018126) #34	Usp1 (ENSPEMG00000026352) #35
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000160247	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568.g.a #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Golden Hamster	MODERN SPECIES	849												Lepr (ENSMAUG00000005584)	Leprot (ENSMAUG00000011623) #19	Dnajc6 (ENSMAUG00000013619) #20	ENSMAUG00000009918 #21	Jak1 (ENSMAUG00000010024) #22	Raver2 (ENSMAUG00000004248) #23	Cachd1 (ENSMAUG00000000758) #24
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001022662	Oma1 (ENSCGRG00001019711)	4921539E11Rik (ENSCGRG00001020618)	Slc35d1 (ENSCGRG00001022056)	Mier1 (ENSCGRG00001002839)	Dnai4 (ENSCGRG00001013824)	Insl5 (ENSCGRG00001018011)	Dynlt5 (ENSCGRG00001018434)	Sgip1 (ENSCGRG00001006459)	Pde4b (ENSCGRG00001000502)	Lepr (ENSCGRG00001013297)	Leprot (ENSCGRG00001018267) #19	Dnajc6 (ENSCGRG00001021227) #20	ENSCGRG00001024354	ENSCGRG00001003307 #21	Jak1 (ENSCGRG00001008727) #22	Raver2 (ENSCGRG00001011852) #23	Cachd1 (ENSCGRG00001024125) #24	Ube2u (ENSCGRG00001024744) #25	ENSCGRG00001023231	Ror1 (ENSCGRG00001015667) #26	Pgm1 (ENSCGRG00001024185) #27	Efcab7 (ENSCGRG00001013291) #28	Itgb3bp (ENSCGRG00001023317) #29	Alg6 (ENSCGRG00001024513) #30	Foxd3 (ENSCGRG00001009393) #31	ENSCGRG00001002098	Atg4c (ENSCGRG00001000630) #32	ENSCGRG00001002780	Dock7 (ENSCGRG00001017762) #34	Angptl3 (ENSCGRG00001024053) #33
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000158038	ENSGT00390000007027	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35	ENSGT00940000158468
Mus	ANCESTRAL SPECIES	3	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35
Mus_A	ANCESTRAL SPECIES	3	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35
Mus_B	ANCESTRAL SPECIES	5	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.b	ENSGT01030000234531.A.b.a.a	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000010146	ENSGT00940000155665.j	ENSGT01030000234573.A.b.a	ENSGT00940000156209	ENSGT00940000154396.b.b	ENSGT00940000160185	ENSGT00940000156301	ENSGT00940000155190	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.b.a	ENSGT01030000234531.A.b.a.b	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.b.a	ENSGT00730000111209	ENSGT00390000006503.a #19	ENSGT00940000158755 #20	ENSGT00940000154568 #21	ENSGT00940000157092 #22	ENSGT00940000158648 #23	ENSGT00860000135728	ENSGT00940000157568 #24	ENSGT00940000162256 #25	ENSGT00940000153947.B #26	ENSGT00940000155542.b #27	ENSGT00390000015466 #28	ENSGT00390000004336 #29	ENSGT00940000153733.B #30	ENSGT00940000161645.b #31	ENSGT00860000136250	ENSGT00530000063000.a.a.a #32	ENSGT00940000156746 #33	ENSGT00940000155661 #34	ENSGT00910000144243 #35
Steppe mouse	MODERN SPECIES	2743																Jak1 (ENSMSIG00000032175) #22	Raver2 (ENSMSIG00000032177) #23	ENSMSIG00000032179	Cachd1 (ENSMSIG00000032180) #24	Ube2u (ENSMSIG00000032183) #25	ENSMSIG00000032184 #26
spretus	MODERN SPECIES	13	Mier1 (MGP_SPRETEiJ_G0027187)	Dnai4 (MGP_SPRETEiJ_G0027186)	Insl5 (MGP_SPRETEiJ_G0027185)	Dynlt5 (MGP_SPRETEiJ_G0027184)	Sgip1 (MGP_SPRETEiJ_G0027183)	Pde4b (MGP_SPRETEiJ_G0027182)	MGP_SPRETEiJ_G0027181	MGP_SPRETEiJ_G0027180	MGP_SPRETEiJ_G0027179	C130073F10Rik (MGP_SPRETEiJ_G0027178)	MGP_SPRETEiJ_G0027177	Lepr (MGP_SPRETEiJ_G0027176)	Leprot (MGP_SPRETEiJ_G0027175) #19	Dnajc6 (MGP_SPRETEiJ_G0027174) #20	Ak4 (MGP_SPRETEiJ_G0027173) #21	Jak1 (MGP_SPRETEiJ_G0027172) #22	Raver2 (MGP_SPRETEiJ_G0027171) #23	MGP_SPRETEiJ_G0027170	Cachd1 (MGP_SPRETEiJ_G0027169) #24	Ube2u (MGP_SPRETEiJ_G0027168) #25	Ror1 (MGP_SPRETEiJ_G0027167) #26	Pgm1 (MGP_SPRETEiJ_G0027166) #27	Efcab7 (MGP_SPRETEiJ_G0027165) #28	Itgb3bp (MGP_SPRETEiJ_G0027164) #29	Alg6 (MGP_SPRETEiJ_G0027163) #30	Foxd3 (MGP_SPRETEiJ_G0027162) #31	MGP_SPRETEiJ_G0027160	Atg4c (MGP_SPRETEiJ_G0027159) #32	Angptl3 (MGP_SPRETEiJ_G0027158) #33	Dock7 (MGP_SPRETEiJ_G0027157) #34	MGP_SPRETEiJ_G0027156 #35
Mouse	MODERN SPECIES	13	Dnai4 (ENSMUSG00000035126)	Insl5 (ENSMUSG00000066090)	Dynlt5 (ENSMUSG00000028523)	Sgip1 (ENSMUSG00000028524)	Pde4b (ENSMUSG00000028525)	Gm12789 (ENSMUSG00000078625)	Gm12790 (ENSMUSG00000078626)	Pramel19 (ENSMUSG00000070890)	Pramel18 (ENSMUSG00000037028)	C130073F10Rik (ENSMUSG00000046133)	Pramel17 (ENSMUSG00000035201)	Lepr (ENSMUSG00000057722)	Leprot (ENSMUSG00000035212) #19	Dnajc6 (ENSMUSG00000028528) #20	Ak4 (ENSMUSG00000028527) #21	Jak1 (ENSMUSG00000028530) #22	Raver2 (ENSMUSG00000035275) #23	Cachd1 (ENSMUSG00000028532) #24	Ube2u (ENSMUSG00000069733) #25	Ror1 (ENSMUSG00000035305) #26	Pgm1 (ENSMUSG00000025791) #27	Efcab7 (ENSMUSG00000073791) #28	Itgb3bp (ENSMUSG00000028549) #29	Alg6 (ENSMUSG00000073792) #30	Foxd3 (ENSMUSG00000067261) #31	Atg4c (ENSMUSG00000028550) #32	Angptl3 (ENSMUSG00000028553) #33	Dock7 (ENSMUSG00000028556) #34	Usp1 (ENSMUSG00000028560) #35	I0C0044D17Rik (ENSMUSG00000073794)	Kank4 (ENSMUSG00000035407)
Ryukyu mouse	MODERN SPECIES	13	Mier1 (MGP_CAROLIEiJ_G0026218)	Dnai4 (MGP_CAROLIEiJ_G0026217)	Insl5 (MGP_CAROLIEiJ_G0026216)	MGP_CAROLIEiJ_G0026215	Sgip1 (MGP_CAROLIEiJ_G0026214)	Pde4b (MGP_CAROLIEiJ_G0026213)	Gm12789 (MGP_CAROLIEiJ_G0026212)	MGP_CAROLIEiJ_G0026211	MGP_CAROLIEiJ_G0026210	C130073F10Rik (MGP_CAROLIEiJ_G0026209)	MGP_CAROLIEiJ_G0026208	Lepr (MGP_CAROLIEiJ_G0026207)	Leprot (MGP_CAROLIEiJ_G0026206) #19	Dnajc6 (MGP_CAROLIEiJ_G0026205) #20	Ak4 (MGP_CAROLIEiJ_G0026204) #21	Jak1 (MGP_CAROLIEiJ_G0026203) #22	Raver2 (MGP_CAROLIEiJ_G0026202) #23	MGP_CAROLIEiJ_G0026201	Cachd1 (MGP_CAROLIEiJ_G0026200) #24	Ube2u (MGP_CAROLIEiJ_G0026199) #25	Ror1 (MGP_CAROLIEiJ_G0026198) #26	Pgm1 (MGP_CAROLIEiJ_G0026197) #27	MGP_CAROLIEiJ_G0026196 #28	Itgb3bp (MGP_CAROLIEiJ_G0026195) #29	Alg6 (MGP_CAROLIEiJ_G0026194) #30	Foxd3 (MGP_CAROLIEiJ_G0026193) #31	MGP_CAROLIEiJ_G0026192	Atg4c (MGP_CAROLIEiJ_G0026191) #32	Angptl3 (MGP_CAROLIEiJ_G0026190) #33	Dock7 (MGP_CAROLIEiJ_G0026189) #34	MGP_CAROLIEiJ_G0026188 #35
Shrew mouse	MODERN SPECIES	19	Slc35d1 (MGP_PahariEiJ_G0028555)	Mier1 (MGP_PahariEiJ_G0028554)	Dnai4 (MGP_PahariEiJ_G0028553)	Insl5 (MGP_PahariEiJ_G0028552)	MGP_PahariEiJ_G0028551	Sgip1 (MGP_PahariEiJ_G0028550)	Pde4b (MGP_PahariEiJ_G0028549)	MGP_PahariEiJ_G0028548	MGP_PahariEiJ_G0028547	MGP_PahariEiJ_G0028546	Pramel17 (MGP_PahariEiJ_G0028545)	Lepr (MGP_PahariEiJ_G0028544)	Leprot (MGP_PahariEiJ_G0028543) #19	Dnajc6 (MGP_PahariEiJ_G0028542) #20	Ak4 (MGP_PahariEiJ_G0028541) #21	Jak1 (MGP_PahariEiJ_G0028540) #22	Raver2 (MGP_PahariEiJ_G0028539) #23	MGP_PahariEiJ_G0028538	Cachd1 (MGP_PahariEiJ_G0028537) #24	MGP_PahariEiJ_G0028536 #25	Ror1 (MGP_PahariEiJ_G0028535) #26	Pgm1 (MGP_PahariEiJ_G0028534) #27	MGP_PahariEiJ_G0028533 #28	Itgb3bp (MGP_PahariEiJ_G0028532) #29	Alg6 (MGP_PahariEiJ_G0028531) #30	Foxd3 (MGP_PahariEiJ_G0028530) #31	MGP_PahariEiJ_G0028529	Atg4c (MGP_PahariEiJ_G0028528) #32	Angptl3 (MGP_PahariEiJ_G0028527) #33	Dock7 (MGP_PahariEiJ_G0028526) #34	Usp1 (MGP_PahariEiJ_G0028525) #35
Rat	MODERN SPECIES	15	Mier1 (ENSRNOG00000007175)	Dnai4 (ENSRNOG00000006999)	ENSRNOG00000067831	Dynlt5 (ENSRNOG00000023100)	Sgip1 (ENSRNOG00000006357)	Pde4b (ENSRNOG00000005905)	LOC120096581 (ENSRNOG00000045614)	ENSRNOG00000067146	Pramef12-ps1 (ENSRNOG00000037977)	ENSRNOG00000069853	ENSRNOG00000069037	Lepr (ENSRNOG00000023664)	Leprot (ENSRNOG00000050849) #19	Dnajc6 (ENSRNOG00000052887) #20	Ak4 (ENSRNOG00000045738) #21	Jak1 (ENSRNOG00000011157) #22	Raver2 (ENSRNOG00000023812) #23	Cachd1 (ENSRNOG00000010514) #24	Ube2u (ENSRNOG00000023895) #25	Ror1 (ENSRNOG00000029449) #26	Pgm1 (ENSRNOG00000009889) #27	Efcab7 (ENSRNOG00000009782) #28	Itgb3bp (ENSRNOG00000009116) #29	Alg6 (ENSRNOG00000009045) #30	Foxd3 (ENSRNOG00000066522) #31	ENSRNOG00000064901	Atg4c (ENSRNOG00000008767) #32	Angptl3 (ENSRNOG00000008638) #33	Dock7 (ENSRNOG00000008298) #34	Usp1 (ENSRNOG00000007890) #35	Kank4 (ENSRNOG00000007779)
Upper Galilee mountains blind mole rat	MODERN SPECIES	746		C8a (ENSNGAG00000019815)	C8b (ENSNGAG00000006426)	Dab1 (ENSNGAG00000020160)	Oma1 (ENSNGAG00000018246)	Slc35d1 (ENSNGAG00000020096)	Mier1 (ENSNGAG00000006460)	ENSNGAG00000008280	Dynlt5 (ENSNGAG00000010091)	Sgip1 (ENSNGAG00000015208)	Pde4b (ENSNGAG00000008558)	Lepr (ENSNGAG00000005263)	Leprot (ENSNGAG00000000423) #19	Dnajc6 (ENSNGAG00000005987) #20	Ak4 (ENSNGAG00000015116) #21	Jak1 (ENSNGAG00000008128) #22	Raver2 (ENSNGAG00000000905) #23	Cachd1 (ENSNGAG00000018544) #24	ENSNGAG00000014807	Ror1 (ENSNGAG00000016109) #26	Pgm1 (ENSNGAG00000001015) #27	Efcab7 (ENSNGAG00000004878) #28	Itgb3bp (ENSNGAG00000015057) #29	ENSNGAG00000018384	Alg6 (ENSNGAG00000010907) #30	ENSNGAG00000012776	Atg4c (ENSNGAG00000015045) #32	ENSNGAG00000015494	ENSNGAG00000018494 #34	Angptl3 (ENSNGAG00000000389) #33
Lesser Egyptian jerboa	MODERN SPECIES	98															ENSJJAG00000021591	Jak1 (ENSJJAG00000022247) #22	Raver2 (ENSJJAG00000000374) #23	ENSJJAG00000002474	Cachd1 (ENSJJAG00000007547) #24	ENSJJAG00000009546	Ror1 (ENSJJAG00000010121) #26	Pgm1 (ENSJJAG00000011313) #27	Efcab7 (ENSJJAG00000011831) #28	Alg6 (ENSJJAG00000012437) #30	Foxd3 (ENSJJAG00000015766) #31	ENSJJAG00000016061	Atg4c (ENSJJAG00000016837) #32	Dock7 (ENSJJAG00000011659) #34	Angptl3 (ENSJJAG00000016186) #33	Usp1 (ENSJJAG00000017329) #35	ENSJJAG00000019020
Kangaroo rat	MODERN SPECIES	370	Lrrc40 (ENSDORG00000000667)	Lrrc7 (ENSDORG00000000664)	Rpe65 (ENSDORG00000004476)	Wls (ENSDORG00000007449)	Gng12 (ENSDORG00000027722)	Gadd45a (ENSDORG00000011668)	ENSDORG00000023240	Serbp1 (ENSDORG00000002189)	Slc35d1 (ENSDORG00000002120)	Mier1 (ENSDORG00000002114)	Sgip1 (ENSDORG00000001885)	Pde4b (ENSDORG00000010712)	Leprot (ENSDORG00000005691) #19	Dnajc6 (ENSDORG00000005685) #20	Ak4 (ENSDORG00000023966) #21	Jak1 (ENSDORG00000013462) #22	Raver2 (ENSDORG00000002498) #23	Cachd1 (ENSDORG00000011104) #24	Ror1 (ENSDORG00000014715) #26	Pgm1 (ENSDORG00000006501) #27	Efcab7 (ENSDORG00000013731) #28	Alg6 (ENSDORG00000013729) #30	Atg4c (ENSDORG00000027209) #32	Angptl3 (ENSDORG00000008279) #33	Dock7 (ENSDORG00000008269) #34	Usp1 (ENSDORG00000008268) #35	ENSDORG00000029852	Snrnp40 (ENSDORG00000004126)	Zcchc17 (ENSDORG00000004128)	Fabp3 (ENSDORG00000024318)	Serinc2 (ENSDORG00000001817)