Bilateria	ANCESTRAL SPECIES																	ENSGT00390000007341 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00390000007341 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES	137																ENSGT00390000007341.a #22	ENSGT00390000012435 #24	ENSGT00940000157150 #28
Gnathostomata	ANCESTRAL SPECIES	13														ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b	ENSGT01020000230401.a.a.b	ENSGT01030000234906	ENSGT00940000156103	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000154482.b.b.a	ENSGT00940000154225.b	ENSGT00940000165081	ENSGT00530000063583.a.a.a
Euteleostomi	ANCESTRAL SPECIES	15	ENSGT00940000157135 #31	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.b	ENSGT01030000234906	ENSGT01030000235064	ENSGT00940000156103	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000154482.b.b.a	ENSGT00940000154225.b	ENSGT00940000165081
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29
Tetrapoda	ANCESTRAL SPECIES	156				ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29
Amniota	ANCESTRAL SPECIES	8	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Mammalia	ANCESTRAL SPECIES	26	ENSGT00950000182767.b.a.b.a	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Theria	ANCESTRAL SPECIES	14	ENSGT00950000182767.b.a.b.a	ENSGT00950000182767.b.b	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Eutheria	ANCESTRAL SPECIES	12	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Primates	ANCESTRAL SPECIES	2	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b.pb #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Cebidae	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Marmoset	MODERN SPECIES	1	FANCM (ENSCJAG00000015945) #7	MIS18BP1 (ENSCJAG00000015929) #8	ENSCJAG00000079332 #9	ENSCJAG00000077837 #10	ENSCJAG00000074579 #11	RPL10L (ENSCJAG00000076382) #12	ENSCJAG00000072188 #13	MDGA2 (ENSCJAG00000017353) #14	ENSCJAG00000080762 #15	ENSCJAG00000051936 #16	ENSCJAG00000078416 #17	ENSCJAG00000087039 #18	ENSCJAG00000022603 #19	LRR1 (ENSCJAG00000017394) #20	ENSCJAG00000079121 #21	MGAT2 (ENSCJAG00000017412) #22	DNAAF2 (ENSCJAG00000047844) #23	POLE2 (ENSCJAG00000017431) #24	ENSCJAG00000074511 #25	ENSCJAG00000074566 #26	KLHDC1 (ENSCJAG00000006013) #27	KLHDC2 (ENSCJAG00000006021) #28	NEMF (ENSCJAG00000006093) #29	ARF6 (ENSCJAG00000039337) #30	VCPKMT (ENSCJAG00000057893) #31	SOS2 (ENSCJAG00000006256) #32	ENSCJAG00000070792 #33	ENSCJAG00000086453 #34	ENSCJAG00000073385 #35	L2HGDH (ENSCJAG00000006308) #36	DMAC2L (ENSCJAG00000006325) #37
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593 #30	ENSGT00390000013555	ENSGT00530000065161	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656.s.a #21	ENSGT00940000161656.s.b #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593.wc.b #30	ENSGT00550000076327	ENSGT00940000156593.vc #30	ENSGT00390000013555	ENSGT00940000155525.n	ENSGT00530000065161	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000154384.h.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656.s.a #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593.vc #30	ENSGT00390000013555	ENSGT00940000155525.n	ENSGT00530000065161	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a
Orangutan	MODERN SPECIES	5	LRFN5 (ENSPPYG00000005771)	FSCB (ENSPPYG00000005772)	C14orf28 (ENSPPYG00000005773)	KLHL28 (ENSPPYG00000005774)	TOGARAM1 (ENSPPYG00000005775)	PRPF39 (ENSPPYG00000005776)	FKBP3 (ENSPPYG00000005778)	FANCM (ENSPPYG00000005781) #7	MIS18BP1 (ENSPPYG00000005782) #8	ENSPPYG00000031000	RPL10L (ENSPPYG00000005783) #12	MDGA2 (ENSPPYG00000005784) #14	RPS29 (ENSPPYG00000005785)	LRR1 (ENSPPYG00000005787) #20	RPL36AL (ENSPPYG00000005788) #21	MGAT2 (ENSPPYG00000005789) #22	DNAAF2 (ENSPPYG00000005790) #23	POLE2 (ENSPPYG00000005791) #24	KLHDC1 (ENSPPYG00000005792) #27	KLHDC2 (ENSPPYG00000005793) #28	NEMF (ENSPPYG00000041653) #29	ARF6 (ENSPPYG00000005795) #30	ENSPPYG00000039796	VCPKMT (ENSPPYG00000005798) #31	SOS2 (ENSPPYG00000005799) #32	L2HGDH (ENSPPYG00000005800) #36	DMAC2L (ENSPPYG00000033217) #37	CDKL1 (ENSPPYG00000005802)	MAP4K5 (ENSPPYG00000005803)	ATL1 (ENSPPYG00000005804)	SAV1 (ENSPPYG00000005805)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000155658.bb.b	ENSGT00390000007029.j.a	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000154384.h.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656.s.a #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593.vc #30	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000158704
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00390000000687.w.b	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000154384.h.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656.s.a #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593.vc #30	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Human	MODERN SPECIES	5	FBXO33 (ENSG00000165355)	LRFN5 (ENSG00000165379)	FSCB (ENSG00000189139)	C14orf28 (ENSG00000179476)	KLHL28 (ENSG00000179454)	TOGARAM1 (ENSG00000198718)	PRPF39 (ENSG00000185246)	FKBP3 (ENSG00000100442)	FANCM (ENSG00000187790) #7	MIS18BP1 (ENSG00000129534) #8	RPL10L (ENSG00000165496) #12	MDGA2 (ENSG00000139915) #14	RPS29 (ENSG00000213741) #18	LRR1 (ENSG00000165501) #20	RPL36AL (ENSG00000165502) #21	MGAT2 (ENSG00000168282) #22	DNAAF2 (ENSG00000165506) #23	POLE2 (ENSG00000100479) #24	KLHDC1 (ENSG00000197776) #27	KLHDC2 (ENSG00000165516) #28	NEMF (ENSG00000165525) #29	ARF6 (ENSG00000165527) #30	VCPKMT (ENSG00000100483) #31	SOS2 (ENSG00000100485) #32	L2HGDH (ENSG00000087299) #36	DMAC2L (ENSG00000125375) #37	CDKL1 (ENSG00000100490)	MAP4K5 (ENSG00000012983)	ATL1 (ENSG00000198513)	SAV1 (ENSG00000151748)	NIN (ENSG00000100503)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.d.a.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593 #30	ENSGT00390000013555	ENSGT00940000155525.n	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.d.a.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.a.a.b	ENSGT00390000009819.a.b.a.b	ENSGT00940000154720.b.pb #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00550000076327	ENSGT00940000156593 #30	ENSGT00390000013555	ENSGT00940000155525.n	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.d.a.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000010799.u.b.a.b.a.a	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.a.a.b	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00390000013555	ENSGT00940000155525.n	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.d.a.b	ENSGT00940000154514.c	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000010799.u.b.a.b.a.a	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.a.a.b	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000155525.n	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.c	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00390000003682.ib.a.b.f.a.a.b.a.b.a.a.a.b	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT01100000263577.a.a.b.b.a.a.b.b.b.a.a.a	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Crab-eating macaque	MODERN SPECIES	17	KLHL28 (ENSMFAG00000033166)	TOGARAM1 (ENSMFAG00000041007)	ENSMFAG00000000044	FANCM (ENSMFAG00000000383) #7	MIS18BP1 (ENSMFAG00000043146) #8	ENSMFAG00000055972 ##34	ENSMFAG00000055183 ##34	ENSMFAG00000064548 #25	RPL10L (ENSMFAG00000053210) #12	MDGA2 (ENSMFAG00000032319) #14	ENSMFAG00000007818	ENSMFAG00000034295	ENSMFAG00000045980	LRR1 (ENSMFAG00000036709) #20	ENSMFAG00000057803	MGAT2 (ENSMFAG00000043906) #22	DNAAF2 (ENSMFAG00000045239) #23	POLE2 (ENSMFAG00000002595) #24	ENSMFAG00000047329	KLHDC1 (ENSMFAG00000003879) #27	KLHDC2 (ENSMFAG00000035256) #28	NEMF (ENSMFAG00000005357) #29	ARF6 (ENSMFAG00000001534) #30	VCPKMT (ENSMFAG00000033945) #31	SOS2 (ENSMFAG00000000174) #32	L2HGDH (ENSMFAG00000044149) #36	DMAC2L (ENSMFAG00000042085) #37	CDKL1 (ENSMFAG00000003833)	MAP4K5 (ENSMFAG00000001082)	ATL1 (ENSMFAG00000000528)	SAV1 (ENSMFAG00000032466)
Rhesus	MODERN SPECIES	17	TOGARAM1 (ENSMMUG00000010860)	PRPF39 (ENSMMUG00000010862)	FKBP3 (ENSMMUG00000016512)	FANCM (ENSMMUG00000016513) #7	MIS18BP1 (ENSMMUG00000016515) #8	ENSMMUG00000053931	ENSMMUG00000053288	RPL10L (ENSMMUG00000058343) #12	MDGA2 (ENSMMUG00000015110) #14	ENSMMUG00000062305	ENSMMUG00000016009	ENSMMUG00000058168 ##15	RPS29 (ENSMMUG00000029367)	LRR1 (ENSMMUG00000037526) #20	RPL36AL (ENSMMUG00000008286) #21	MGAT2 (ENSMMUG00000008285) #22	DNAAF2 (ENSMMUG00000008284) #23	POLE2 (ENSMMUG00000003913) #24	ENSMMUG00000057868	KLHDC1 (ENSMMUG00000003914) #27	KLHDC2 (ENSMMUG00000029366) #28	NEMF (ENSMMUG00000008214) #29	ENSMMUG00000049787	ARF6 (ENSMMUG00000041889) #30	VCPKMT (ENSMMUG00000007460) #31	SOS2 (ENSMMUG00000007464) #32	L2HGDH (ENSMMUG00000007468) #36	DMAC2L (ENSMMUG00000002615) #37	CDKL1 (ENSMMUG00000002616)	MAP4K5 (ENSMMUG00000020550)	ATL1 (ENSMMUG00000009577)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.d.a.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000010799.u.b.a.b.a.a	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135.i #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00510000046985.h.b.a.a.b	ENSGT00940000158704
Olive baboon	MODERN SPECIES	17	C14orf28 (ENSPANG00000025022)	KLHL28 (ENSPANG00000006988)	TOGARAM1 (ENSPANG00000000618)	PRPF39 (ENSPANG00000023258)	ENSPANG00000026275	FANCM (ENSPANG00000023200) #7	MIS18BP1 (ENSPANG00000014241) #8	ENSPANG00000048824	ENSPANG00000034638	RPL10L (ENSPANG00000013954) #12	MDGA2 (ENSPANG00000017421) #14	ENSPANG00000033087	ENSPANG00000033998	LRR1 (ENSPANG00000025547) #20	ENSPANG00000006946 #21	MGAT2 (ENSPANG00000014315) #22	DNAAF2 (ENSPANG00000000616) #23	POLE2 (ENSPANG00000006986) #24	ENSPANG00000031975	KLHDC1 (ENSPANG00000017514) #27	KLHDC2 (ENSPANG00000009939) #28	ENSPANG00000039989	NEMF (ENSPANG00000023256) #29	ARF6 (ENSPANG00000011140) #30	VCPKMT (ENSPANG00000017148) #31	SOS2 (ENSPANG00000017147) #32	L2HGDH (ENSPANG00000017146) #36	DMAC2L (ENSPANG00000009735) #37	CDKL1 (ENSPANG00000024495)	MAP4K5 (ENSPANG00000009733)	ATL1 (ENSPANG00000014239)
Vervet Monkey	MODERN SPECIES	16	LRFN5 (ENSCSAG00000015372)	ENSCSAG00000015366	C14orf28 (ENSCSAG00000015356)	KLHL28 (ENSCSAG00000015349)	TOGARAM1 (ENSCSAG00000015341)	PRPF39 (ENSCSAG00000015332)	ENSCSAG00000015323	FANCM (ENSCSAG00000015308) #7	MIS18BP1 (ENSCSAG00000015301) #8	RPL10L (ENSCSAG00000019404) #12	MDGA2 (ENSCSAG00000015293) #14	ENSCSAG00000019405	RPS29 (ENSCSAG00000015276) #18	LRR1 (ENSCSAG00000015272) #20	ENSCSAG00000015268	MGAT2 (ENSCSAG00000019406) #22	DNAAF2 (ENSCSAG00000015265) #23	POLE2 (ENSCSAG00000015257) #24	KLHDC1 (ENSCSAG00000015240) #27	KLHDC2 (ENSCSAG00000015231) #28	NEMF (ENSCSAG00000015208) #29	ENSCSAG00000019407	ARF6 (ENSCSAG00000019408) #30	ENSCSAG00000015194	VCPKMT (ENSCSAG00000015192) #31	SOS2 (ENSCSAG00000015182) #32	L2HGDH (ENSCSAG00000015176) #36	DMAC2L (ENSCSAG00000015171) #37	CDKL1 (ENSCSAG00000015164)	MAP4K5 (ENSCSAG00000015154)	ATL1 (ENSCSAG00000015138)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Bushbaby	MODERN SPECIES	169	ENSOGAG00000024477	ENSOGAG00000030811	C14orf28 (ENSOGAG00000006919)	KLHL28 (ENSOGAG00000006921)	TOGARAM1 (ENSOGAG00000003004)	PRPF39 (ENSOGAG00000024171)	FKBP3 (ENSOGAG00000003012)	FANCM (ENSOGAG00000003015) #7	MIS18BP1 (ENSOGAG00000003023) #8	ENSOGAG00000025507	RPL10L (ENSOGAG00000011013) #12	MDGA2 (ENSOGAG00000013696) #14	ENSOGAG00000013218	LRR1 (ENSOGAG00000013224) #20	ENSOGAG00000013226	MGAT2 (ENSOGAG00000013227) #22	DNAAF2 (ENSOGAG00000028257) #23	POLE2 (ENSOGAG00000013230) #24	KLHDC1 (ENSOGAG00000016320) #27	KLHDC2 (ENSOGAG00000016325) #28	NEMF (ENSOGAG00000016330) #29	ARF6 (ENSOGAG00000016339) #30	VCPKMT (ENSOGAG00000014277) #31	SOS2 (ENSOGAG00000014279) #32	L2HGDH (ENSOGAG00000014286) #36	DMAC2L (ENSOGAG00000014289) #37	CDKL1 (ENSOGAG00000014294)	MAP4K5 (ENSOGAG00000010934)	ATL1 (ENSOGAG00000014295)	SAV1 (ENSOGAG00000034521)	NIN (ENSOGAG00000014299)
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00390000007341.a #22
Mouse lemur	MODERN SPECIES	30	ENSMICG00000047595	IWS1 (ENSMICG00000009948)	ENSMICG00000030599	MYO7B (ENSMICG00000002875)	ENSMICG00000032495	LIMS2 (ENSMICG00000017200)	WDR33 (ENSMICG00000031042)	POLR2D (ENSMICG00000009931)	AMMECR1L (ENSMICG00000043486)	SAP130 (ENSMICG00000000105)	UGGT1 (ENSMICG00000017698)	ENSMICG00000011505	HS6ST1 (ENSMICG00000044622)	ENSMICG00000035944	ENSMICG00000042030	ENSMICG00000028396 #22	PLEKHB2 (ENSMICG00000031046)	FAM168B (ENSMICG00000009507)	ENSMICG00000009501	ENSMICG00000030156	ENSMICG00000008794	ENSMICG00000042668	ENSMICG00000006310	PTPN18 (ENSMICG00000010256)	IMP4 (ENSMICG00000011797)	CCDC115 (ENSMICG00000029104)	ENSMICG00000006771	ENSMICG00000031591	ENSMICG00000034193	NRXN1 (ENSMICG00000009937)	FSHR (ENSMICG00000006050)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Glires	ANCESTRAL SPECIES	12	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Muroidea	ANCESTRAL SPECIES	54	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00940000158296	ENSGT00700000106038.B	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00900000143197	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194423	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Cricetidae_B	ANCESTRAL SPECIES	18			ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00900000143197	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194423	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Prairie vole	MODERN SPECIES		Lrfn5 (ENSMOCG00000021045)	ENSMOCG00000015843	Gm527 (ENSMOCG00000005543)	Klhl28 (ENSMOCG00000006562)	Togaram1 (ENSMOCG00000021755)	Prpf39 (ENSMOCG00000009148)	Fkbp3 (ENSMOCG00000011130)	Fancm (ENSMOCG00000008775) #7	Mis18bp1 (ENSMOCG00000017171) #8	Rpl10l (ENSMOCG00000009910) #12	ENSMOCG00000005109	Mdga2 (ENSMOCG00000022499) #14	Rps29 (ENSMOCG00000017681) #18	Lrr1 (ENSMOCG00000018456) #20	ENSMOCG00000021414	Mgat2 (ENSMOCG00000007181) #22	Dnaaf2 (ENSMOCG00000005708) #23	ENSMOCG00000007212	Pole2 (ENSMOCG00000012838) #24	Klhdc1 (ENSMOCG00000020719) #27	Klhdc2 (ENSMOCG00000004420) #28	Nemf (ENSMOCG00000009325) #29	ENSMOCG00000015415	Arf6 (ENSMOCG00000016767) #30	Vcpkmt (ENSMOCG00000016386) #31	Sos2 (ENSMOCG00000022743) #32	L2hgdh (ENSMOCG00000013172) #36	Dmac2l (ENSMOCG00000018826) #37	Cdkl1 (ENSMOCG00000001925)	Map4k5 (ENSMOCG00000012415)	Atl1 (ENSMOCG00000008819)
Northern American deer mouse	MODERN SPECIES	5	Prpf39 (ENSPEMG00000002480)	Fkbp3 (ENSPEMG00000022009)	ENSPEMG00000005619 #7	ENSPEMG00000027540 #7	Mis18bp1 (ENSPEMG00000021507) #8	Rpl10l (ENSPEMG00000031167) #12	Mdga2 (ENSPEMG00000021900) #14	ENSPEMG00000028103	Dlk1 (ENSPEMG00000015106)	ENSPEMG00000013803	ENSPEMG00000018179	Rps29 (ENSPEMG00000027801) #18	ENSPEMG00000027114	Lrr1 (ENSPEMG00000013165) #20	ENSPEMG00000028168	Mgat2 (ENSPEMG00000000956) #22	Dnaaf2 (ENSPEMG00000011084) #23	Pole2 (ENSPEMG00000015042) #24	Klhdc1 (ENSPEMG00000001943) #27	Klhdc2 (ENSPEMG00000000018) #28	Nemf (ENSPEMG00000026713) #29	Arf6 (ENSPEMG00000024869) #30	Vcpkmt (ENSPEMG00000011230) #31	Sos2 (ENSPEMG00000018079) #32	L2hgdh (ENSPEMG00000017428) #36	Dmac2l (ENSPEMG00000020580) #37	Cdkl1 (ENSPEMG00000011830)	Map4k5 (ENSPEMG00000016155)	Atl1 (ENSPEMG00000022136)	Sav1 (ENSPEMG00000022702)	Nin (ENSPEMG00000020865)
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00900000143197	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00900000143162	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194423	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Chinese hamster chok1gshd	MODERN SPECIES	2	Gm527 (ENSCGRG00001022771)	Klhl28 (ENSCGRG00001022249)	Togaram1 (ENSCGRG00001020874)	Prpf39 (ENSCGRG00001022389)	ENSCGRG00001020987	Fancm (ENSCGRG00001023573) #7	ENSCGRG00001007634 #8	ENSCGRG00001005241 #8	ENSCGRG00001002491	Rpl10l (ENSCGRG00001009841) #12	ENSCGRG00001000984	Mdga2 (ENSCGRG00001023756) #14	ENSCGRG00001020113 #18	Lrr1 (ENSCGRG00001022235) #20	Rpl36al (ENSCGRG00001021589)	Mgat2 (ENSCGRG00001010693) #22	ENSCGRG00001018548	Dnaaf2 (ENSCGRG00001013061) #23	Pole2 (ENSCGRG00001011322) #24	Klhdc1 (ENSCGRG00001020229) #27	Klhdc2 (ENSCGRG00001019467) #28	Nemf (ENSCGRG00001017898) #29	ENSCGRG00001002262	Arf6 (ENSCGRG00001010290) #30	Vcpkmt (ENSCGRG00001023926) #31	ENSCGRG00001009974	Sos2 (ENSCGRG00001012314) #32	L2hgdh (ENSCGRG00001023345) #36	Dmac2l (ENSCGRG00001021790) #37	Cdkl1 (ENSCGRG00001019887)	ENSCGRG00001017162
Golden Hamster	MODERN SPECIES	652											ENSMAUG00000020516	Mdga2 (ENSMAUG00000006354) #14	ENSMAUG00000000899 #18	Lrr1 (ENSMAUG00000009765) #20	ENSMAUG00000016113	Mgat2 (ENSMAUG00000009453) #22	ENSMAUG00000007273	Dnaaf2 (ENSMAUG00000014305) #23	Pole2 (ENSMAUG00000001075) #24	Klhdc2 (ENSMAUG00000012014) #28	ENSMAUG00000009106 #29	ENSMAUG00000000792	Vcpkmt (ENSMAUG00000001299) #31	Sos2 (ENSMAUG00000013147) #32	L2hgdh (ENSMAUG00000015336) #36	Dmac2l (ENSMAUG00000020577) #37	Cdkl1 (ENSMAUG00000020825)	Map4k5 (ENSMAUG00000020655)	Atl1 (ENSMAUG00000016977)	Sav1 (ENSMAUG00000018575)	Abhd12b (ENSMAUG00000011642)
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Mus	ANCESTRAL SPECIES	10	ENSGT00940000158296	ENSGT00700000106038.B	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194876	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000158296	ENSGT00700000106038.B	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194876	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Mus_B	ANCESTRAL SPECIES	17	ENSGT00700000106038.B	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000007686.b.d.q.a.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194876	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421.g #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Mouse	MODERN SPECIES	3	Fscb (ENSMUSG00000043060)	Gm527 (ENSMUSG00000047227)	Klhl28 (ENSMUSG00000020948)	Togaram1 (ENSMUSG00000035614)	Prpf39 (ENSMUSG00000035597)	Fkbp3 (ENSMUSG00000020949)	Fancm (ENSMUSG00000055884) #7	Mis18bp1 (ENSMUSG00000047534) #8	Wdr20rt (ENSMUSG00000035560)	Rpl10l (ENSMUSG00000060499) #12	Mdga2 (ENSMUSG00000034912) #14	Rps29 (ENSMUSG00000034892) #18	Lrr1 (ENSMUSG00000034883) #20	Rpl36al (ENSMUSG00000049751)	Gm49383 (ENSMUSG00000113149)	Mgat2 (ENSMUSG00000043998) #22	Dnaaf2 (ENSMUSG00000020973) #23	Pole2 (ENSMUSG00000020974) #24	Klhdc1 (ENSMUSG00000051890) #27	Klhdc2 (ENSMUSG00000020978) #28	Nemf (ENSMUSG00000020982) #29	Arf6 (ENSMUSG00000044147) #30	Vcpkmt (ENSMUSG00000049882) #31	Sos2 (ENSMUSG00000034801) #32	L2hgdh (ENSMUSG00000020988) #36	Dmac2l (ENSMUSG00000054894) #37	Cdkl1 (ENSMUSG00000020990)	Map4k5 (ENSMUSG00000034761)	Atl1 (ENSMUSG00000021066)	Sav1 (ENSMUSG00000021067)	Nin (ENSMUSG00000021068)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000158296	ENSGT00700000106038.B	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000007686.b.d.q.a.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00900000143162	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00970000194876	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421.g #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
spretus	MODERN SPECIES	3	Lrfn5 (MGP_SPRETEiJ_G0018628)	MGP_SPRETEiJ_G0018629	Fscb (MGP_SPRETEiJ_G0018630)	Gm527 (MGP_SPRETEiJ_G0018631)	Klhl28 (MGP_SPRETEiJ_G0018632)	Togaram1 (MGP_SPRETEiJ_G0018633)	Prpf39 (MGP_SPRETEiJ_G0018634)	Fkbp3 (MGP_SPRETEiJ_G0018635)	Fancm (MGP_SPRETEiJ_G0018636) #7	Mis18bp1 (MGP_SPRETEiJ_G0018637) #8	MGP_SPRETEiJ_G0018638	Rpl10l (MGP_SPRETEiJ_G0018639) #12	Mdga2 (MGP_SPRETEiJ_G0018640) #14	Rps29 (MGP_SPRETEiJ_G0018641) #18	Lrr1 (MGP_SPRETEiJ_G0018642) #20	Mgat2 (MGP_SPRETEiJ_G0018643) #22	Dnaaf2 (MGP_SPRETEiJ_G0018644) #23	MGP_SPRETEiJ_G0018645	Pole2 (MGP_SPRETEiJ_G0018646) #24	Klhdc1 (MGP_SPRETEiJ_G0018647) #27	Klhdc2 (MGP_SPRETEiJ_G0018648) #28	Nemf (MGP_SPRETEiJ_G0018649) #29	MGP_SPRETEiJ_G0018650	Arf6 (MGP_SPRETEiJ_G0018651) #30	Vcpkmt (MGP_SPRETEiJ_G0018652) #31	Sos2 (MGP_SPRETEiJ_G0018653) #32	L2hgdh (MGP_SPRETEiJ_G0018654) #36	Dmac2l (MGP_SPRETEiJ_G0018655) #37	Cdkl1 (MGP_SPRETEiJ_G0018656)	Map4k5 (MGP_SPRETEiJ_G0018657)	Atl1 (MGP_SPRETEiJ_G0018658)
Steppe mouse	MODERN SPECIES	3136												ENSMSIG00000028576	ENSMSIG00000028587 #18	Lrr1 (ENSMSIG00000028593) #20	ENSMSIG00000028597	Mgat2 (ENSMSIG00000028600) #22	Dnaaf2 (ENSMSIG00000028604) #23	Pole2 (ENSMSIG00000028607) #24	Klhdc1 (ENSMSIG00000028633) #27	Klhdc2 (ENSMSIG00000028652) #28	Nemf (ENSMSIG00000028656) #29	Arf6 (ENSMSIG00000028712) #30	ENSMSIG00000028714	Vcpkmt (ENSMSIG00000028718) #31	Sos2 (ENSMSIG00000028726) #32	L2hgdh (ENSMSIG00000028773) #36	Dmac2l (ENSMSIG00000028784) #37	Cdkl1 (ENSMSIG00000028792)	ENSMSIG00000028800	Map4k5 (ENSMSIG00000028803)	Atl1 (ENSMSIG00000028917)
Ryukyu mouse	MODERN SPECIES	3	Lrfn5 (MGP_CAROLIEiJ_G0017783)	MGP_CAROLIEiJ_G0017784	MGP_CAROLIEiJ_G0017785	Gm527 (MGP_CAROLIEiJ_G0017786)	Klhl28 (MGP_CAROLIEiJ_G0017787)	Togaram1 (MGP_CAROLIEiJ_G0017788)	Prpf39 (MGP_CAROLIEiJ_G0017789)	Fkbp3 (MGP_CAROLIEiJ_G0017790)	Fancm (MGP_CAROLIEiJ_G0017791) #7	Mis18bp1 (MGP_CAROLIEiJ_G0017792) #8	Rpl10l (MGP_CAROLIEiJ_G0017793) #12	Mdga2 (MGP_CAROLIEiJ_G0017794) #14	Rps29 (MGP_CAROLIEiJ_G0017795) #18	Lrr1 (MGP_CAROLIEiJ_G0017796) #20	MGP_CAROLIEiJ_G0017797	Mgat2 (MGP_CAROLIEiJ_G0017798) #22	Dnaaf2 (MGP_CAROLIEiJ_G0017799) #23	MGP_CAROLIEiJ_G0017800	Pole2 (MGP_CAROLIEiJ_G0017801) #24	Klhdc1 (MGP_CAROLIEiJ_G0017802) #27	Klhdc2 (MGP_CAROLIEiJ_G0017803) #28	Nemf (MGP_CAROLIEiJ_G0017804) #29	MGP_CAROLIEiJ_G0017805	Arf6 (MGP_CAROLIEiJ_G0017806) #30	Vcpkmt (MGP_CAROLIEiJ_G0017807) #31	Sos2 (MGP_CAROLIEiJ_G0017808) #32	L2hgdh (MGP_CAROLIEiJ_G0017809) #36	Dmac2l (MGP_CAROLIEiJ_G0017810) #37	Cdkl1 (MGP_CAROLIEiJ_G0017811)	Map4k5 (MGP_CAROLIEiJ_G0017812)	Atl1 (MGP_CAROLIEiJ_G0017813)
Shrew mouse	MODERN SPECIES	20	Lrfn5 (MGP_PahariEiJ_G0029539)	MGP_PahariEiJ_G0029540	MGP_PahariEiJ_G0029541	Gm527 (MGP_PahariEiJ_G0029542)	Klhl28 (MGP_PahariEiJ_G0029543)	MGP_PahariEiJ_G0029544	Prpf39 (MGP_PahariEiJ_G0029545)	Fkbp3 (MGP_PahariEiJ_G0029546)	Fancm (MGP_PahariEiJ_G0029547) #7	Mis18bp1 (MGP_PahariEiJ_G0029548) #8	Rpl10l (MGP_PahariEiJ_G0029549) #12	Mdga2 (MGP_PahariEiJ_G0029550) #14	Rps29 (MGP_PahariEiJ_G0029551) #18	Lrr1 (MGP_PahariEiJ_G0029552) #20	MGP_PahariEiJ_G0029553	Mgat2 (MGP_PahariEiJ_G0029554) #22	Dnaaf2 (MGP_PahariEiJ_G0029555) #23	MGP_PahariEiJ_G0029556	Pole2 (MGP_PahariEiJ_G0029557) #24	Klhdc1 (MGP_PahariEiJ_G0029558) #27	Klhdc2 (MGP_PahariEiJ_G0029559) #28	MGP_PahariEiJ_G0029560 #29	MGP_PahariEiJ_G0029561	Arf6 (MGP_PahariEiJ_G0029562) #30	Vcpkmt (MGP_PahariEiJ_G0029563) #31	Sos2 (MGP_PahariEiJ_G0029564) #32	L2hgdh (MGP_PahariEiJ_G0029565) #36	Dmac2l (MGP_PahariEiJ_G0029566) #37	Cdkl1 (MGP_PahariEiJ_G0029567)	Map4k5 (MGP_PahariEiJ_G0029568)	Atl1 (MGP_PahariEiJ_G0029569)
Rat	MODERN SPECIES	16	Fkbp3 (ENSRNOG00000004629)	Fancm (ENSRNOG00000056721) #7	Mis18bp1 (ENSRNOG00000023093) #8	Fau (ENSRNOG00000062652)	ENSRNOG00000069999	ENSRNOG00000063060	LOC689408 (ENSRNOG00000038771)	Rpl10l (ENSRNOG00000067139) #12	Mdga2 (ENSRNOG00000000618) #14	ENSRNOG00000064159	Rpl11-ps10 (ENSRNOG00000004163)	RGD1559639 (ENSRNOG00000069595)	Tigar-ps1 (ENSRNOG00000046064)	Rps29 (ENSRNOG00000004196)	Lrr1 (ENSRNOG00000004216) #20	Mgat2 (ENSRNOG00000004234) #22	Dnaaf2 (ENSRNOG00000028155) #23	Pole2 (ENSRNOG00000004242) #24	Klhdc1 (ENSRNOG00000004425) #27	ENSRNOG00000066035	AABR07064716.1 (ENSRNOG00000028058)	Klhdc2 (ENSRNOG00000004474) #28	AABR07064719.2 (ENSRNOG00000056128) #29	Arf6 (ENSRNOG00000070951) #30	Vcpkmt (ENSRNOG00000065305) #31	Sos2 (ENSRNOG00000004826) #32	ENSRNOG00000067932	L2hgdh (ENSRNOG00000004857) #36	Dmac2l (ENSRNOG00000004893) #37	Cdkl1 (ENSRNOG00000038720)	Map4k5 (ENSRNOG00000004923)
Upper Galilee mountains blind mole rat	MODERN SPECIES	684											ENSNGAG00000018918	Mdga2 (ENSNGAG00000000533) #14	ENSNGAG00000013159 #18	Lrr1 (ENSNGAG00000006447) #20	ENSNGAG00000021930	Mgat2 (ENSNGAG00000012185) #22	ENSNGAG00000011083	Dnaaf2 (ENSNGAG00000019379) #23	Pole2 (ENSNGAG00000018619) #24	Klhdc1 (ENSNGAG00000019790) #27	Klhdc2 (ENSNGAG00000002689) #28	ENSNGAG00000021321	ENSNGAG00000020523 #29	Arf6 (ENSNGAG00000021182) #30	ENSNGAG00000001008	Vcpkmt (ENSNGAG00000010479) #31	Sos2 (ENSNGAG00000020145) #32	L2hgdh (ENSNGAG00000015201) #36	Dmac2l (ENSNGAG00000013412) #37	Cdkl1 (ENSNGAG00000009359)	Map4k5 (ENSNGAG00000017115)
Lesser Egyptian jerboa	MODERN SPECIES	41	Togaram1 (ENSJJAG00000013948)	Prpf39 (ENSJJAG00000022757)	Fkbp3 (ENSJJAG00000019949)	Mis18bp1 (ENSJJAG00000022998) #8	ENSJJAG00000014954	ENSJJAG00000012368	ENSJJAG00000011553	Timm8a2 (ENSJJAG00000024355)	Rpl10l (ENSJJAG00000012627) #12	ENSJJAG00000004783	Mdga2 (ENSJJAG00000013029) #14	ENSJJAG00000021083	ENSJJAG00000021494	ENSJJAG00000010560	ENSJJAG00000012461	Mgat2 (ENSJJAG00000011949) #22	Dnaaf2 (ENSJJAG00000021409) #23	ENSJJAG00000016576	Pole2 (ENSJJAG00000005554) #24	ENSJJAG00000021597	Klhdc1 (ENSJJAG00000004235) #27	Klhdc2 (ENSJJAG00000020249) #28	ENSJJAG00000023001 #29	Arf6 (ENSJJAG00000015638) #30	Vcpkmt (ENSJJAG00000018572) #31	Sos2 (ENSJJAG00000009626) #32	L2hgdh (ENSJJAG00000022441) #36	Dmac2l (ENSJJAG00000017123) #37	Cdkl1 (ENSJJAG00000021944)	Map4k5 (ENSJJAG00000021048)	Atl1 (ENSJJAG00000010744)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000168019	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000018085.a.a.a.b.a	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Marmotini	ANCESTRAL SPECIES	15	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000003419	TOGARAM1 (ENSMMMG00000003305)	PRPF39 (ENSMMMG00000003250)	FKBP3 (ENSMMMG00000003203)	ENSMMMG00000003194 #7	ENSMMMG00000003184 #7	ENSMMMG00000003166 #8	ENSMMMG00000003154 #8	RPL10L (ENSMMMG00000003144) #12	ENSMMMG00000003100 #14	ENSMMMG00000003083 #14	ENSMMMG00000003059	ENSMMMG00000003048 #18	LRR1 (ENSMMMG00000003031) #20	ENSMMMG00000003026	MGAT2 (ENSMMMG00000003019) #22	DNAAF2 (ENSMMMG00000003007) #23	POLE2 (ENSMMMG00000002980) #24	KLHDC1 (ENSMMMG00000002951) #27	KLHDC2 (ENSMMMG00000002856) #28	NEMF (ENSMMMG00000002268) #29	ARF6 (ENSMMMG00000002177) #30	VCPKMT (ENSMMMG00000002166) #31	SOS2 (ENSMMMG00000002005) #32	L2HGDH (ENSMMMG00000001966) #36	DMAC2L (ENSMMMG00000001954) #37	CDKL1 (ENSMMMG00000001936)	MAP4K5 (ENSMMMG00000001735)	ENSMMMG00000001706	SAV1 (ENSMMMG00000001694)	NIN (ENSMMMG00000001504)
Marmotini_b	ANCESTRAL SPECIES	14		ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.a	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Squirrel	MODERN SPECIES	183					ENSSTOG00000033121	C14orf28 (ENSSTOG00000009376)	KLHL28 (ENSSTOG00000009381)	TOGARAM1 (ENSSTOG00000009385)	PRPF39 (ENSSTOG00000019828)	FKBP3 (ENSSTOG00000002249)	RPL10L (ENSSTOG00000020857) #12	MDGA2 (ENSSTOG00000008672) #14	ENSSTOG00000006936	LRR1 (ENSSTOG00000006973) #20	ENSSTOG00000033824	MGAT2 (ENSSTOG00000007012) #22	DNAAF2 (ENSSTOG00000023987) #23	POLE2 (ENSSTOG00000007024) #24	KLHDC1 (ENSSTOG00000007062) #27	KLHDC2 (ENSSTOG00000000958) #28	NEMF (ENSSTOG00000000966) #29	ARF6 (ENSSTOG00000022625) #30
Eurasian red squirrel	MODERN SPECIES	11	TOGARAM1 (ENSSVLG00005010233)	ENSSVLG00005010123	FKBP3 (ENSSVLG00005010096)	FANCM (ENSSVLG00005009709) #7	MIS18BP1 (ENSSVLG00005009570) #8	ENSSVLG00005009546	ENSSVLG00005009496	RPL10L (ENSSVLG00005009435) #12	ENSSVLG00005009425	MDGA2 (ENSSVLG00005009198) #14	ENSSVLG00005009176	ENSSVLG00005009142	ENSSVLG00005009087 #18	LRR1 (ENSSVLG00005008998) #20	RPL36AL (ENSSVLG00005008979) #21	MGAT2 (ENSSVLG00005008964) #22	DNAAF2 (ENSSVLG00005008952) #23	POLE2 (ENSSVLG00005008639) #24	ENSSVLG00005008574	KLHDC1 (ENSSVLG00005008548) #27	KLHDC2 (ENSSVLG00005008503) #28	NEMF (ENSSVLG00005008455) #29	ARF6 (ENSSVLG00005008433) #30	VCPKMT (ENSSVLG00005008401) #31	SOS2 (ENSSVLG00005008363) #32	L2HGDH (ENSSVLG00005008301) #36	DMAC2L (ENSSVLG00005008238) #37	CDKL1 (ENSSVLG00005008203)	MAP4K5 (ENSSVLG00005008150)	ATL1 (ENSSVLG00005008081)	SAV1 (ENSSVLG00005008036)
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000168019	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000158296	ENSGT00940000164190	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.b #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00390000017718	ENSGT00940000158296	ENSGT00940000164190	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000018085.a.a.a.b.b.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Degu	MODERN SPECIES	143	TOGARAM1 (ENSODEG00000012575)	PRPF39 (ENSODEG00000012768)	ENSODEG00000012211	ENSODEG00000020068	ENSODEG00000020294	ENSODEG00000013247	ENSODEG00000020065	ENSODEG00000014722	ENSODEG00000020072 #12	ENSODEG00000020069 #12	MDGA2 (ENSODEG00000012460) #14	ENSODEG00000019999	ENSODEG00000011799	LRR1 (ENSODEG00000013292) #20	ENSODEG00000020042	MGAT2 (ENSODEG00000012184) #22	DNAAF2 (ENSODEG00000013283) #23	ENSODEG00000012666 #24	KLHDC1 (ENSODEG00000013185) #27	KLHDC2 (ENSODEG00000013007) #28	NEMF (ENSODEG00000013310) #29	ARF6 (ENSODEG00000020106) #30	VCPKMT (ENSODEG00000011299) #31	ENSODEG00000013334 #32	ENSODEG00000012746	ENSODEG00000012187	ENSODEG00000011751	L2HGDH (ENSODEG00000012605) #36	DMAC2L (ENSODEG00000011553) #37	CDKL1 (ENSODEG00000011708)	ENSODEG00000011537
Long-tailed chinchilla	MODERN SPECIES	116	LRFN5 (ENSCLAG00000012406)	KIF4B (ENSCLAG00000017749)	ENSCLAG00000014365	ENSCLAG00000012694	C14orf28 (ENSCLAG00000012418)	KLHL28 (ENSCLAG00000017031)	TOGARAM1 (ENSCLAG00000013060)	PRPF39 (ENSCLAG00000012205)	FKBP3 (ENSCLAG00000016970)	MIS18BP1 (ENSCLAG00000011476) #8	RPL10L (ENSCLAG00000018026) #12	MDGA2 (ENSCLAG00000015619) #14	ENSCLAG00000010995	ENSCLAG00000008358	ENSCLAG00000013834	MGAT2 (ENSCLAG00000017895) #22	DNAAF2 (ENSCLAG00000013335) #23	POLE2 (ENSCLAG00000013349) #24	KLHDC1 (ENSCLAG00000011115) #27	KLHDC2 (ENSCLAG00000016294) #28	NEMF (ENSCLAG00000012469) #29	ARF6 (ENSCLAG00000018079) #30	VCPKMT (ENSCLAG00000009925) #31	SOS2 (ENSCLAG00000010549) #32	L2HGDH (ENSCLAG00000007771) #36	DMAC2L (ENSCLAG00000011112) #37	CDKL1 (ENSCLAG00000009074)	MAP4K5 (ENSCLAG00000012379)	ATL1 (ENSCLAG00000014538)	SAV1 (ENSCLAG00000009132)	NIN (ENSCLAG00000009323)
Guinea pig	MODERN SPECIES	23	ENSCPOG00000035115	LRFN5 (ENSCPOG00000005325)	KIF4B (ENSCPOG00000033325)	C14orf28 (ENSCPOG00000030521)	KLHL28 (ENSCPOG00000011148)	TOGARAM1 (ENSCPOG00000015482)	PRPF39 (ENSCPOG00000001443)	FKBP3 (ENSCPOG00000031983)	FANCM (ENSCPOG00000001446) #7	MIS18BP1 (ENSCPOG00000001453) #8	RPL10L (ENSCPOG00000015183) #12	MDGA2 (ENSCPOG00000001953) #14	RPS29 (ENSCPOG00000032637) #18	LRR1 (ENSCPOG00000032561) #20	ENSCPOG00000037100	MGAT2 (ENSCPOG00000009139) #22	DNAAF2 (ENSCPOG00000009147) #23	POLE2 (ENSCPOG00000004304) #24	KLHDC1 (ENSCPOG00000038390) #27	KLHDC2 (ENSCPOG00000011835) #28	NEMF (ENSCPOG00000011839) #29	ARF6 (ENSCPOG00000008137) #30	VCPKMT (ENSCPOG00000011127) #31	SOS2 (ENSCPOG00000010690) #32	L2HGDH (ENSCPOG00000010700) #36	DMAC2L (ENSCPOG00000014471) #37	CDKL1 (ENSCPOG00000034915)	MAP4K5 (ENSCPOG00000014479)	ATL1 (ENSCPOG00000040134)	SAV1 (ENSCPOG00000031808)	NIN (ENSCPOG00000006119)
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000000611	ENSHGLG00000019549	ENSHGLG00000040429	ENSHGLG00000048597	ENSHGLG00000048747 #12	ENSHGLG00000032093	ENSHGLG00000016763 #14	ENSHGLG00000036645	ENSHGLG00000017089	ENSHGLG00000033780	ENSHGLG00000038797	ENSHGLG00000047775	RPS29 (ENSHGLG00000033323) #18	ENSHGLG00000013547 #20	ENSHGLG00000035140	MGAT2 (ENSHGLG00000020857) #22	ENSHGLG00000010009 #23	ENSHGLG00000032032	POLE2 (ENSHGLG00000015308) #24	KLHDC1 (ENSHGLG00000014487) #27	KLHDC2 (ENSHGLG00000014323) #28	NEMF (ENSHGLG00000014110) #29	ARF6 (ENSHGLG00000040454) #30	ENSHGLG00000012671	METTL21D (ENSHGLG00000011833) #31	ENSHGLG00000044017	SOS2 (ENSHGLG00000011807) #32	L2HGDH (ENSHGLG00000010171) #36	DMAC2L (ENSHGLG00000042464) #37	CDKL1 (ENSHGLG00000042701)	ENSHGLG00000007162
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00950000182767.b.b.d	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514.b	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Rabbit	MODERN SPECIES	8	PRPF39 (ENSOCUG00000007531)	ENSOCUG00000007535	FANCM (ENSOCUG00000007539) #7	MIS18BP1 (ENSOCUG00000007550) #8	ENSOCUG00000007451	ENSOCUG00000035475	ENSOCUG00000027427	ENSOCUG00000021198	ENSOCUG00000012678 ##10	RPL10L (ENSOCUG00000015485) #12	MDGA2 (ENSOCUG00000017002) #14	ENSOCUG00000033024	ENSOCUG00000027423 #18	LRR1 (ENSOCUG00000000121) #20	ENSOCUG00000027946	MGAT2 (ENSOCUG00000015463) #22	ENSOCUG00000015466 #23	POLE2 (ENSOCUG00000015480) #24	ENSOCUG00000031174	KLHDC1 (ENSOCUG00000017367) #27	KLHDC2 (ENSOCUG00000017378) #28	NEMF (ENSOCUG00000017384) #29	ARF6 (ENSOCUG00000001692) #30	VCPKMT (ENSOCUG00000006049) #31	SOS2 (ENSOCUG00000006052) #32	L2HGDH (ENSOCUG00000011422) #36	DMAC2L (ENSOCUG00000003348) #37	CDKL1 (ENSOCUG00000023744)	MAP4K5 (ENSOCUG00000012996)	ATL1 (ENSOCUG00000017706)	SAV1 (ENSOCUG00000017714)
Pika	MODERN SPECIES	6954																ENSOPRG00000010080 #22
Tree shrew	MODERN SPECIES	4657														LRR1 (ENSTBEG00000004122) #20	ENSTBEG00000004681	MGAT2 (ENSTBEG00000004873) #22	ENSTBEG00000004937 #23	ENSTBEG00000005387 #23	ENSTBEG00000006765	KLHDC2 (ENSTBEG00000007091) #28	NEMF (ENSTBEG00000007752) #29
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072
Eulipotyphla	ANCESTRAL SPECIES	36														ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29
Hedgehog	MODERN SPECIES	5973																MGAT2 (ENSEEUG00000000403) #22	ENSEEUG00000000408 #23	ENSEEUG00000000409 #23
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Suina	ANCESTRAL SPECIES	30	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Chacoan peccary	MODERN SPECIES	785													RPS29 (ENSCWAG00000004408) #18	LRR1 (ENSCWAG00000004332) #20	ENSCWAG00000004319 #21	MGAT2 (ENSCWAG00000004305) #22	DNAAF2 (ENSCWAG00000004295) #23	POLE2 (ENSCWAG00000003999) #24	KLHDC1 (ENSCWAG00000003952) #27	KLHDC2 (ENSCWAG00000003879) #28	NEMF (ENSCWAG00000003697) #29	ARF6 (ENSCWAG00000015149) #30	ENSCWAG00000015116	VCPKMT (ENSCWAG00000015004) #31	SOS2 (ENSCWAG00000014880) #32	L2HGDH (ENSCWAG00000014752) #36	DMAC2L (ENSCWAG00000014684) #37	CDKL1 (ENSCWAG00000014631)	MAP4K5 (ENSCWAG00000014542)	ATL1 (ENSCWAG00000014502)	SAV1 (ENSCWAG00000014463)
Pig	MODERN SPECIES		ENSSSCG00000061989	C14orf28 (ENSSSCG00000030679)	KLHL28 (ENSSSCG00000004996)	TOGARAM1 (ENSSSCG00000027765)	PRPF39 (ENSSSCG00000004997)	FKBP3 (ENSSSCG00000021217)	FANCM (ENSSSCG00000005000) #7	MIS18BP1 (ENSSSCG00000004999) #8	ENSSSCG00000049486	RPL10L (ENSSSCG00000005001) #12	MDGA2 (ENSSSCG00000005002) #14	ENSSSCG00000046948	RPS29 (ENSSSCG00000038507) #18	LRR1 (ENSSSCG00000005004) #20	RPL36AL (ENSSSCG00000005006)	MGAT2 (ENSSSCG00000035611) #22	DNAAF2 (ENSSSCG00000058931) #23	POLE2 (ENSSSCG00000005008) #24	KLHDC1 (ENSSSCG00000032489) #27	KLHDC2 (ENSSSCG00000005009) #28	NEMF (ENSSSCG00000005011) #29	ARF6 (ENSSSCG00000005012) #30	VCPKMT (ENSSSCG00000036735) #31	SOS2 (ENSSSCG00000005015) #32	ENSSSCG00000050792	L2HGDH (ENSSSCG00000005016) #36	DMAC2L (ENSSSCG00000031354) #37	CDKL1 (ENSSSCG00000034516)	MAP4K5 (ENSSSCG00000036634)	ENSSSCG00000048049	ATL1 (ENSSSCG00000005020)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000017718	ENSGT00940000158296	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Cetacea	ANCESTRAL SPECIES	2	ENSGT01070000253911	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154451.k.b.a	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Odontoceti	ANCESTRAL SPECIES	2	ENSGT01070000253911	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154451.k.b.a	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000158296	ENSGT01070000253911	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154451.k.b.a	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000158296	ENSGT01070000253911	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154451.k.b.a	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00390000010130.c.b	ENSGT00940000158296	ENSGT01070000253911	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154451.k.b.a	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Beluga whale	MODERN SPECIES	44	KLHL28 (ENSDLEG00000011522)	TOGARAM1 (ENSDLEG00000011465)	PRPF39 (ENSDLEG00000011359)	FKBP3 (ENSDLEG00000011337)	FANCM (ENSDLEG00000011267) #7	MIS18BP1 (ENSDLEG00000011193) #8	ENSDLEG00000011165	RPL10L (ENSDLEG00000011152) #12	ENSDLEG00000011136	MDGA2 (ENSDLEG00000011093) #14	RCHY1 (ENSDLEG00000011086)	ENSDLEG00000011056 #18	SUMO4 (ENSDLEG00000011037)	LRR1 (ENSDLEG00000011024) #20	RPL36AL (ENSDLEG00000011016)	MGAT2 (ENSDLEG00000011008) #22	DNAAF2 (ENSDLEG00000011002) #23	ENSDLEG00000010993	KLHDC1 (ENSDLEG00000010967) #27	KLHDC2 (ENSDLEG00000010929) #28	NEMF (ENSDLEG00000010733) #29	ENSDLEG00000010695 #30	VCPKMT (ENSDLEG00000010678) #31	SOS2 (ENSDLEG00000010181) #32	L2HGDH (ENSDLEG00000010068) #36	ATP5S (ENSDLEG00000010048) #37	CDKL1 (ENSDLEG00000009991)	MAP4K5 (ENSDLEG00000009907)	ATL1 (ENSDLEG00000009841)	SAV1 (ENSDLEG00000009823)	NIN (ENSDLEG00000007666)
Narwhal	MODERN SPECIES	308	C14orf28 (ENSMMNG00015021420)	KLHL28 (ENSMMNG00015021431)	TOGARAM1 (ENSMMNG00015014363)	PRPF39 (ENSMMNG00015014443)	FKBP3 (ENSMMNG00015014480)	FANCM (ENSMMNG00015014517) #7	MIS18BP1 (ENSMMNG00015014605) #8	ENSMMNG00015014644	ENSMMNG00015014655	MDGA2 (ENSMMNG00015014684) #14	ENSMMNG00015014745	ENSMMNG00015014762 #18	ENSMMNG00015014775	LRR1 (ENSMMNG00015014796) #20	RPL36AL (ENSMMNG00015014806) #21	MGAT2 (ENSMMNG00015014820) #22	DNAAF2 (ENSMMNG00015014825) #23	POLE2 (ENSMMNG00015014865) #24	KLHDC1 (ENSMMNG00015014948) #27	KLHDC2 (ENSMMNG00015014971) #28	NEMF (ENSMMNG00015015008) #29	ENSMMNG00015015051	ARF6 (ENSMMNG00015015073) #30	ENSMMNG00015015085	ENSMMNG00015015096	VCPKMT (ENSMMNG00015015112) #31	SOS2 (ENSMMNG00015015168) #32	L2HGDH (ENSMMNG00015015232) #36	DMAC2L (ENSMMNG00015015288) #37	CDKL1 (ENSMMNG00015015315)	MAP4K5 (ENSMMNG00015015347)
Vaquita	MODERN SPECIES	11	ENSPSNG00000011503	ENSPSNG00000011564	C14orf28 (ENSPSNG00000011621)	KLHL28 (ENSPSNG00000011700)	TOGARAM1 (ENSPSNG00000011785)	PRPF39 (ENSPSNG00000011904)	FKBP3 (ENSPSNG00000012043)	FANCM (ENSPSNG00000012151) #7	MIS18BP1 (ENSPSNG00000012752) #8	ENSPSNG00000012944	MDGA2 (ENSPSNG00000013019) #14	ENSPSNG00000013557	RPS29 (ENSPSNG00000013692) #18	LRR1 (ENSPSNG00000013807) #20	RPL36AL (ENSPSNG00000013911) #21	MGAT2 (ENSPSNG00000013944) #22	DNAAF2 (ENSPSNG00000013973) #23	POLE2 (ENSPSNG00000014074) #24	KLHDC1 (ENSPSNG00000014247) #27	KLHDC2 (ENSPSNG00000014341) #28	NEMF (ENSPSNG00000014455) #29	ARF6 (ENSPSNG00000014599) #30	ENSPSNG00000014645	VCPKMT (ENSPSNG00000014707) #31	SOS2 (ENSPSNG00000014809) #32	L2HGDH (ENSPSNG00000014943) #36	DMAC2L (ENSPSNG00000015252) #37	CDKL1 (ENSPSNG00000015390)	MAP4K5 (ENSPSNG00000015487)	ATL1 (ENSPSNG00000015894)	SAV1 (ENSPSNG00000016010)
Sperm whale	MODERN SPECIES	2	C11H14orf28 (ENSPCTG00005013271)	KLHL28 (ENSPCTG00005013374)	TOGARAM1 (ENSPCTG00005013510)	PRPF39 (ENSPCTG00005014054)	FKBP3 (ENSPCTG00005001685)	FANCM (ENSPCTG00005002676) #7	MIS18BP1 (ENSPCTG00005005248) #8	ENSPCTG00005006004	RPL10L (ENSPCTG00005006129) #12	MDGA2 (ENSPCTG00005006405) #14	ENSPCTG00005007124	RPS29 (ENSPCTG00005007460) #18	ENSPCTG00005007750	LRR1 (ENSPCTG00005007870) #20	RPL36AL (ENSPCTG00005008036) #21	MGAT2 (ENSPCTG00005008112) #22	DNAAF2 (ENSPCTG00005008238) #23	POLE2 (ENSPCTG00005008659) #24	KLHDC1 (ENSPCTG00005009005) #27	KLHDC2 (ENSPCTG00005009495) #28	NEMF (ENSPCTG00005009974) #29	ENSPCTG00005010574	VCPKMT (ENSPCTG00005010868) #31	SOS2 (ENSPCTG00005011239) #32	L2HGDH (ENSPCTG00005011546) #36	DMAC2L (ENSPCTG00005011981) #37	CDKL1 (ENSPCTG00005012442)	MAP4K5 (ENSPCTG00005012914)	ATL1 (ENSPCTG00005014069)	SAV1 (ENSPCTG00005014343)	NIN (ENSPCTG00005015589)
Blue whale	MODERN SPECIES	11	ENSBMSG00010003001	C14orf28 (ENSBMSG00010003032)	KLHL28 (ENSBMSG00010003056)	ENSBMSG00010003087	PRPF39 (ENSBMSG00010003158)	FKBP3 (ENSBMSG00010003176)	ENSBMSG00010003188 #7	ENSBMSG00010003215 #7	MIS18BP1 (ENSBMSG00010003246) #8	RPL10L (ENSBMSG00010003305) #12	MDGA2 (ENSBMSG00010003332) #14	ENSBMSG00010003375	RPS29 (ENSBMSG00010003406) #18	ENSBMSG00010003444	ENSBMSG00010003452 #21	MGAT2 (ENSBMSG00010003463) #22	DNAAF2 (ENSBMSG00010003488) #23	POLE2 (ENSBMSG00010003567) #24	KLHDC1 (ENSBMSG00010003665) #27	KLHDC2 (ENSBMSG00010003726) #28	NEMF (ENSBMSG00010003828) #29	VCPKMT (ENSBMSG00010003933) #31	SOS2 (ENSBMSG00010004018) #32	L2HGDH (ENSBMSG00010004093) #36	ENSBMSG00010004115	DMAC2L (ENSBMSG00010004144) #37	CDKL1 (ENSBMSG00010004194)	MAP4K5 (ENSBMSG00010004241)	ATL1 (ENSBMSG00010004299)	SAV1 (ENSBMSG00010004334)	NIN (ENSBMSG00010004695)
Pecora	ANCESTRAL SPECIES	6	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000163117	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	3	UBR1 (ENSCHYG00000019460)	ENSCHYG00000019622	TMEM62 (ENSCHYG00000019664)	CCNDBP1 (ENSCHYG00000019864)	EPB42 (ENSCHYG00000020016)	RPL10L (ENSCHYG00000020714) #12	MDGA2 (ENSCHYG00000020749) #14	ENSCHYG00000021213 #34	ENSCHYG00000021226	ENSCHYG00000021239	ENSCHYG00000021253	ENSCHYG00000021270	ENSCHYG00000021301 #18	LRR1 (ENSCHYG00000021388) #20	RPL36AL (ENSCHYG00000021472) #21	ENSCHYG00000021495 #22	DNAAF2 (ENSCHYG00000021512) #23	POLE2 (ENSCHYG00000021571) #24	KLHDC1 (ENSCHYG00000021746) #27	KLHDC2 (ENSCHYG00000022046) #28	NEMF (ENSCHYG00000022447) #29	ARF6 (ENSCHYG00000022680) #30	VCPKMT (ENSCHYG00000022716) #31	SOS2 (ENSCHYG00000022880) #32	ENSCHYG00000023369	L2HGDH (ENSCHYG00000023388) #36	DMAC2L (ENSCHYG00000023617) #37	CDKL1 (ENSCHYG00000023705)	MAP4K5 (ENSCHYG00000023796)	ATL1 (ENSCHYG00000024113)	SAV1 (ENSCHYG00000024265)
Yarkand deer	MODERN SPECIES	1071																ENSCHYG00000009781 #22
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000163117	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Siberian musk deer	MODERN SPECIES	367	HAUS2 (ENSMMSG00000009928)	ENSMMSG00000009954	CDAN1 (ENSMMSG00000010034)	TTBK2 (ENSMMSG00000010169)	ENSMMSG00000010254	UBR1 (ENSMMSG00000010297)	TMEM62 (ENSMMSG00000010595)	CCNDBP1 (ENSMMSG00000010730)	EPB42 (ENSMMSG00000010800)	ENSMMSG00000010878	RPL10L (ENSMMSG00000010890) #12	MDGA2 (ENSMMSG00000010907) #14	ENSMMSG00000011017 #18	ENSMMSG00000011035	ENSMMSG00000011073	MGAT2 (ENSMMSG00000011086) #22	DNAAF2 (ENSMMSG00000011094) #23	POLE2 (ENSMMSG00000011159) #24	ENSMMSG00000011631	KLHDC1 (ENSMMSG00000011642) #27	KLHDC2 (ENSMMSG00000011673) #28	NEMF (ENSMMSG00000011746) #29	ARF6 (ENSMMSG00000011947) #30	VCPKMT (ENSMMSG00000011959) #31	SOS2 (ENSMMSG00000014665) #32	L2HGDH (ENSMMSG00000014759) #36	DMAC2L (ENSMMSG00000014785) #37	CDKL1 (ENSMMSG00000014797)	MAP4K5 (ENSMMSG00000014820)	ATL1 (ENSMMSG00000014871)	SAV1 (ENSMMSG00000014902)
Bovidae	ANCESTRAL SPECIES	7	ENSGT00950000182843.a.a.a.a	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Caprinae	ANCESTRAL SPECIES	11	ENSGT00950000182843.a.a.a.a	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072.e	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Goat	MODERN SPECIES	1	ENSCHIG00000021262	TTBK2 (ENSCHIG00000024909)	UBR1 (ENSCHIG00000021132)	TMEM62 (ENSCHIG00000018184)	CCNDBP1 (ENSCHIG00000023441)	EPB42 (ENSCHIG00000023333)	ENSCHIG00000008704	ENSCHIG00000026667	RPL10L (ENSCHIG00000003323) #12	MDGA2 (ENSCHIG00000014808) #14	ENSCHIG00000024018	ENSCHIG00000027190	ENSCHIG00000016738	LRR1 (ENSCHIG00000027198) #20	ENSCHIG00000011261	MGAT2 (ENSCHIG00000010952) #22	DNAAF2 (ENSCHIG00000016942) #23	POLE2 (ENSCHIG00000023859) #24	KLHDC1 (ENSCHIG00000016228) #27	KLHDC2 (ENSCHIG00000016568) #28	NEMF (ENSCHIG00000026761) #29	ENSCHIG00000008760 #30	VCPKMT (ENSCHIG00000012137) #31	SOS2 (ENSCHIG00000025588) #32	L2HGDH (ENSCHIG00000021620) #36	DMAC2L (ENSCHIG00000023027) #37	CDKL1 (ENSCHIG00000008627)	MAP4K5 (ENSCHIG00000017130)	ATL1 (ENSCHIG00000026021)	SAV1 (ENSCHIG00000012803)	NIN (ENSCHIG00000024159)
Rambouillet Sheep	MODERN SPECIES	23	CDAN1 (ENSOARG00020018319)	TTBK2 (ENSOARG00020018417)	ENSOARG00020018471	UBR1 (ENSOARG00020018530)	TMEM62 (ENSOARG00020019209)	CCNDBP1 (ENSOARG00020019380)	EPB42 (ENSOARG00020019440)	ENSOARG00020019955	RPL10L (ENSOARG00020019986) #12	MDGA2 (ENSOARG00020020011) #14	ENSOARG00020020242	ENSOARG00020020288	ENSOARG00020020312 #18	LRR1 (ENSOARG00020020342) #20	RPL36AL (ENSOARG00020020454) #21	MGAT2 (ENSOARG00020020468) #22	DNAAF2 (ENSOARG00020020477) #23	POLE2 (ENSOARG00020020524) #24	KLHDC1 (ENSOARG00020021073) #27	KLHDC2 (ENSOARG00020021157) #28	NEMF (ENSOARG00020021333) #29	ARF6 (ENSOARG00020021666) #30	VCPKMT (ENSOARG00020021706) #31	SOS2 (ENSOARG00020021878) #32	L2HGDH (ENSOARG00020022135) #36	DMAC2L (ENSOARG00020022235) #37	CDKL1 (ENSOARG00020022279)	MAP4K5 (ENSOARG00020022416)	TRIM9 (ENSOARG00020022559)	PYGL (ENSOARG00020022835)	ABHD12B (ENSOARG00020023110)
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000004927	ENSGT00940000163117	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00940000154141.B.s.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Bos	ANCESTRAL SPECIES	13	ENSGT00940000157393	ENSGT00390000004927	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00940000154141.B.s.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000004927	ENSGT00940000164484	ENSGT00390000000491	ENSGT00940000160367	ENSGT00950000183075.a.a.a.b	ENSGT00390000016216	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT00940000154141.B.s.b	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00970000193722	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Hybrid Bos Indicus	MODERN SPECIES	1	CDAN1 (ENSBIXG00005025819)	TTBK2 (ENSBIXG00005025739)	UBR1 (ENSBIXG00005025697)	ENSBIXG00005025668	TMEM62 (ENSBIXG00005004373)	CCNDBP1 (ENSBIXG00005025617)	EPB42 (ENSBIXG00005004355)	ENSBIXG00005025440	RPL10L (ENSBIXG00005025410) #12	MDGA2 (ENSBIXG00005025365) #14	ENSBIXG00005025269	ENSBIXG00005025201	ENSBIXG00005006176 #18	LRR1 (ENSBIXG00005006854) #20	RPL36AL (ENSBIXG00005025097) #21	MGAT2 (ENSBIXG00005025088) #22	DNAAF2 (ENSBIXG00005025065) #23	POLE2 (ENSBIXG00005025043) #24	KLHDC1 (ENSBIXG00005007705) #27	KLHDC2 (ENSBIXG00005024756) #28	NEMF (ENSBIXG00005024651) #29	ARF6 (ENSBIXG00005024374) #30	VCPKMT (ENSBIXG00005024347) #31	SOS2 (ENSBIXG00005004150) #32	L2HGDH (ENSBIXG00005024233) #36	DMAC2L (ENSBIXG00005004131) #37	CDKL1 (ENSBIXG00005004128)	MAP4K5 (ENSBIXG00005024085)	ENSBIXG00005023993	ATL1 (ENSBIXG00005023977)	SAV1 (ENSBIXG00005004102)
Cow	MODERN SPECIES	1	TTBK2 (ENSBTAG00000006470)	UBR1 (ENSBTAG00000021087)	TMEM62 (ENSBTAG00000013031)	CCNDBP1 (ENSBTAG00000013032)	EPB42 (ENSBTAG00000011439)	ENSBTAG00000046363	RPL10L (ENSBTAG00000024582) #12	ENSBTAG00000054557 #14	MDGA2 (ENSBTAG00000005697) #14	ENSBTAG00000055000	ENSBTAG00000034580	ENSBTAG00000055255	RPS29 (ENSBTAG00000052337) #18	LRR1 (ENSBTAG00000004926) #20	RPL36AL (ENSBTAG00000025564)	MGAT2 (ENSBTAG00000033891) #22	DNAAF2 (ENSBTAG00000004930) #23	POLE2 (ENSBTAG00000004931) #24	KLHDC1 (ENSBTAG00000031697) #27	KLHDC2 (ENSBTAG00000004933) #28	NEMF (ENSBTAG00000004934) #29	ARF6 (ENSBTAG00000045980) #30	VCPKMT (ENSBTAG00000005547) #31	SOS2 (ENSBTAG00000005550) #32	L2HGDH (ENSBTAG00000015200) #36	DMAC2L (ENSBTAG00000015202) #37	CDKL1 (ENSBTAG00000004780)	MAP4K5 (ENSBTAG00000014792)	ATL1 (ENSBTAG00000014312)	SAV1 (ENSBTAG00000001539)	ENSBTAG00000054530
Bos_a	ANCESTRAL SPECIES	53											ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Domestic yak	MODERN SPECIES	2	NREP (ENSBGRG00000012240)	ENSBGRG00000012347	EPB41L4A (ENSBGRG00000012470)	ENSBGRG00000013311	ENSBGRG00000013363	SRP19 (ENSBGRG00000013394)	REEP5 (ENSBGRG00000013810)	ENSBGRG00000013905	DCP2 (ENSBGRG00000013921)	MCC (ENSBGRG00000014150)	MDGA2 (ENSBGRG00000015069) #14	RPS29 (ENSBGRG00000015577) #18	LRR1 (ENSBGRG00000015650) #20	ENSBGRG00000015836 #21	RPL36AL (ENSBGRG00000015893) #21	MGAT2 (ENSBGRG00000015912) #22	DNAAF2 (ENSBGRG00000015937) #23	POLE2 (ENSBGRG00000016044) #24	KLHDC1 (ENSBGRG00000016768) #27	KLHDC2 (ENSBGRG00000016910) #28	NEMF (ENSBGRG00000017281) #29	ARF6 (ENSBGRG00000017840) #30	VCPKMT (ENSBGRG00000017893) #31	SOS2 (ENSBGRG00000018125) #32	L2HGDH (ENSBGRG00000018807) #36	DMAC2L (ENSBGRG00000018944) #37	CDKL1 (ENSBGRG00000019004)	MAP4K5 (ENSBGRG00000019193)	ATL1 (ENSBGRG00000019574)	SAV1 (ENSBGRG00000019862)	NIN (ENSBGRG00000019999)
American bison	MODERN SPECIES	3096											REPS2 (ENSBBBG00000015806)	ENSBBBG00000015785	ENSBBBG00000015779	ENSBBBG00000015768 #18	LRR1 (ENSBBBG00000015755) #20	MGAT2 (ENSBBBG00000015739) #22	RPL36AL (ENSBBBG00000015732) #21	ENSBBBG00000003925 #23	POLE2 (ENSBBBG00000008293) #24	KLHDC1 (ENSBBBG00000015649) #27	KLHDC2 (ENSBBBG00000015634) #28	NEMF (ENSBBBG00000003891) #29	ARF6 (ENSBBBG00000000787) #30	VCPKMT (ENSBBBG00000003876) #31	SOS2 (ENSBBBG00000015540) #32	L2HGDH (ENSBBBG00000015468) #36	DMAC2L (ENSBBBG00000015446) #37	CDKL1 (ENSBBBG00000015419)	MAP4K5 (ENSBBBG00000003841)	ATL1 (ENSBBBG00000003834)	SAV1 (ENSBBBG00000015341)
Camelidae	ANCESTRAL SPECIES	8																ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Arabian camel	MODERN SPECIES	32	ENSCDRG00005019518	ENSCDRG00005019525	LRFN5 (ENSCDRG00005019537)	C14orf28 (ENSCDRG00005019566)	KLHL28 (ENSCDRG00005019589)	TOGARAM1 (ENSCDRG00005019611)	PRPF39 (ENSCDRG00005019715)	ENSCDRG00005019780	FANCM (ENSCDRG00005019818) #7	MIS18BP1 (ENSCDRG00005020096) #8	RPL10L (ENSCDRG00005020115) #12	MDGA2 (ENSCDRG00005020132) #14	RPS29 (ENSCDRG00005020184) #18	LRR1 (ENSCDRG00005020201) #20	RPL36AL (ENSCDRG00005020216) #21	MGAT2 (ENSCDRG00005000038) #22	DNAAF2 (ENSCDRG00005000047) #23	POLE2 (ENSCDRG00005000080) #24	KLHDC1 (ENSCDRG00005000150) #27	KLHDC2 (ENSCDRG00005000239) #28	NEMF (ENSCDRG00005000306) #29	ARF6 (ENSCDRG00005000426) #30	VCPKMT (ENSCDRG00005000447) #31	SOS2 (ENSCDRG00005000487) #32	L2HGDH (ENSCDRG00005000598) #36	DMAC2L (ENSCDRG00005000628) #37	CDKL1 (ENSCDRG00005000667)	MAP4K5 (ENSCDRG00005000725)	ATL1 (ENSCDRG00005000779)	SAV1 (ENSCDRG00005000823)	NIN (ENSCDRG00005000903)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072
Carnivora	ANCESTRAL SPECIES		ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Caniformia	ANCESTRAL SPECIES	15	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00390000017718	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000168019	ENSGT00940000154720.d #18	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072
Mustelinae	ANCESTRAL SPECIES	14			ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00940000174635	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
American mink	MODERN SPECIES		CN028 (ENSNVIG00000000068)	KLHL28 (ENSNVIG00000000147)	TOGARAM1 (ENSNVIG00000000156)	PRPF39 (ENSNVIG00000000218)	FKBP3 (ENSNVIG00000000280)	FANCM (ENSNVIG00000000308) #7	MIS18BP1 (ENSNVIG00000000346) #8	ENSNVIG00000000376	RPL10L (ENSNVIG00000000394) #12	MDGA2 (ENSNVIG00000000405) #14	ENSNVIG00000000447	ENSNVIG00000000461	RPS29 (ENSNVIG00000000475) #18	LRR1 (ENSNVIG00000000484) #20	RPL36AL (ENSNVIG00000000493) #21	MGAT2 (ENSNVIG00000000500) #22	DNAAF2 (ENSNVIG00000000507) #23	ENSNVIG00000000530	KLHDC1 (ENSNVIG00000000539) #27	KLHDC2 (ENSNVIG00000000566) #28	NEMF (ENSNVIG00000000665) #29	ARF6 (ENSNVIG00000000704) #30	MT21D (ENSNVIG00000000711) #31	SOS2 (ENSNVIG00000000740) #32	ENSNVIG00000000847 #36	DMAC2L (ENSNVIG00000000850) #37	CDKL1 (ENSNVIG00000000890)	MAP4K5 (ENSNVIG00000000900)	ATL1 (ENSNVIG00000000924)	SAV1 (ENSNVIG00000000994)	NIN (ENSNVIG00000001047)
Ferret	MODERN SPECIES	164					C14orf28 (ENSMPUG00000004678)	ENSMPUG00000004687	TOGARAM1 (ENSMPUG00000004766)	PRPF39 (ENSMPUG00000004786)	ENSMPUG00000004791	FANCM (ENSMPUG00000004849) #7	MIS18BP1 (ENSMPUG00000004865) #8	RPL10L (ENSMPUG00000019624) #12	MDGA2 (ENSMPUG00000004928) #14	ENSMPUG00000004940	LRR1 (ENSMPUG00000004946) #20	MGAT2 (ENSMPUG00000019625) #22	POLE2 (ENSMPUG00000004950) #24	KLHDC1 (ENSMPUG00000004962) #27	KLHDC2 (ENSMPUG00000004970) #28	NEMF (ENSMPUG00000004978) #29	ARF6 (ENSMPUG00000019627) #30	VCPKMT (ENSMPUG00000004994) #31	SOS2 (ENSMPUG00000005022) #32	L2HGDH (ENSMPUG00000005038) #36	DMAC2L (ENSMPUG00000005052) #37	CDKL1 (ENSMPUG00000005078)	MAP4K5 (ENSMPUG00000005086)	ENSMPUG00000019630	ATL1 (ENSMPUG00000005107)	SAV1 (ENSMPUG00000005119)	NIN (ENSMPUG00000005126)
Ursidae	ANCESTRAL SPECIES	10	ENSGT01100000265486	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Ursus	ANCESTRAL SPECIES	98	ENSGT00940000158296	ENSGT01100000265486	ENSGT00990000207410	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00950000185463	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
American black bear	MODERN SPECIES	5932															ENSUAMG00000003540	MGAT2 (ENSUAMG00000003538) #22	DNAAF2 (ENSUAMG00000003534) #23	POLE2 (ENSUAMG00000003500) #24
Polar bear	MODERN SPECIES	98	ENSUMAG00000008316	C14orf28 (ENSUMAG00000008262)	KLHL28 (ENSUMAG00000008258)	TOGARAM1 (ENSUMAG00000007784)	PRPF39 (ENSUMAG00000007716)	FKBP3 (ENSUMAG00000007714)	ENSUMAG00000007704 #7	ENSUMAG00000007697 #7	ENSUMAG00000007693	MIS18BP1 (ENSUMAG00000007683) #8	ENSUMAG00000007664 #14	ENSUMAG00000007657 #14	ENSUMAG00000007648 #18	LRR1 (ENSUMAG00000007643) #20	ENSUMAG00000007641	MGAT2 (ENSUMAG00000007638) #22	ENSUMAG00000007634 #23	POLE2 (ENSUMAG00000007457) #24	KLHDC1 (ENSUMAG00000007434) #27	KLHDC2 (ENSUMAG00000007370) #28	NEMF (ENSUMAG00000007353) #29	ARF6 (ENSUMAG00000007345) #30	VCPKMT (ENSUMAG00000007342) #31	SOS2 (ENSUMAG00000007337) #32	ENSUMAG00000007321 #36
Giant Panda	MODERN SPECIES	12	ENSAMEG00000024405	C14orf28 (ENSAMEG00000002215)	KLHL28 (ENSAMEG00000002211)	TOGARAM1 (ENSAMEG00000030775)	PRPF39 (ENSAMEG00000002185)	FKBP3 (ENSAMEG00000002172)	FANCM (ENSAMEG00000002114) #7	MIS18BP1 (ENSAMEG00000002101) #8	ENSAMEG00000027564	RPL10L (ENSAMEG00000026696) #12	MDGA2 (ENSAMEG00000011184) #14	ENSAMEG00000030506	ENSAMEG00000028675	LRR1 (ENSAMEG00000009529) #20	ENSAMEG00000024687 #21	MGAT2 (ENSAMEG00000019401) #22	DNAAF2 (ENSAMEG00000026375) #23	POLE2 (ENSAMEG00000009547) #24	KLHDC1 (ENSAMEG00000009591) #27	KLHDC2 (ENSAMEG00000009595) #28	NEMF (ENSAMEG00000009624) #29	ARF6 (ENSAMEG00000030588) #30	VCPKMT (ENSAMEG00000009724) #31	SOS2 (ENSAMEG00000009734) #32	L2HGDH (ENSAMEG00000009810) #36	DMAC2L (ENSAMEG00000009828) #37	CDKL1 (ENSAMEG00000009840)	ENSAMEG00000024903	MAP4K5 (ENSAMEG00000009856)	ATL1 (ENSAMEG00000009965)	SAV1 (ENSAMEG00000009991)
Canidae	ANCESTRAL SPECIES	4	ENSGT00390000012955.t.b	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00390000012955.t.b	ENSGT00550000075026.d	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.a	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000174635	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Dog	MODERN SPECIES	36	C8H14orf28 (ENSCAFG00845004109)	KLHL28 (ENSCAFG00845004145)	TOGARAM1 (ENSCAFG00845001513)	PRPF39 (ENSCAFG00845001636)	MIS18BP1 (ENSCAFG00845001722) #8	FKBP3 (ENSCAFG00845001823)	FANCM (ENSCAFG00845001871) #7	ENSCAFG00845001936	ENSCAFG00845001952	RPL10L (ENSCAFG00845002023) #12	MDGA2 (ENSCAFG00845002096) #14	ENSCAFG00845002173	RPS29 (ENSCAFG00845002205) #18	LRR1 (ENSCAFG00845002248) #20	RPL36AL (ENSCAFG00845002270)	MGAT2 (ENSCAFG00845002282) #22	DNAAF2 (ENSCAFG00845002292) #23	POLE2 (ENSCAFG00845002340) #24	KLHDC1 (ENSCAFG00845002378) #27	KLHDC2 (ENSCAFG00845002423) #28	NEMF (ENSCAFG00845002470) #29	ARF6 (ENSCAFG00845002543) #30	VCPKMT (ENSCAFG00845002639) #31	SOS2 (ENSCAFG00845002710) #32	L2HGDH (ENSCAFG00845002841) #36	DMAC2L (ENSCAFG00845002883) #37	CDKL1 (ENSCAFG00845002935)	ENSCAFG00845003013	MAP4K5 (ENSCAFG00845003041)	ATL1 (ENSCAFG00845003140)	SAV1 (ENSCAFG00845003195)
Dingo	MODERN SPECIES	161	TOGARAM1 (ENSCAFG00020022105)	ENSCAFG00020022088	PRPF39 (ENSCAFG00020022077)	ENSCAFG00020022073	ENSCAFG00020022069 #7	ENSCAFG00020022058 #7	MIS18BP1 (ENSCAFG00020022041) #8	ENSCAFG00020022036	ENSCAFG00020022032	MDGA2 (ENSCAFG00020022000) #14	ENSCAFG00020021995	ENSCAFG00020021990	ENSCAFG00020021989 #18	LRR1 (ENSCAFG00020021986) #20	ENSCAFG00020021984	MGAT2 (ENSCAFG00020021983) #22	DNAAF2 (ENSCAFG00020021981) #23	POLE2 (ENSCAFG00020021974) #24	ENSCAFG00020021970	KLHDC1 (ENSCAFG00020021956) #27	KLHDC2 (ENSCAFG00020021947) #28	NEMF (ENSCAFG00020021836) #29	ARF6 (ENSCAFG00020021820) #30	VCPKMT (ENSCAFG00020021818) #31	SOS2 (ENSCAFG00020021773) #32	L2HGDH (ENSCAFG00020021765) #36	DMAC2L (ENSCAFG00020021759) #37	CDKL1 (ENSCAFG00020021749)	MAP4K5 (ENSCAFG00020020139)	ATL1 (ENSCAFG00020020080)	SAV1 (ENSCAFG00020020078)
Red fox	MODERN SPECIES	33		ENSVVUG00000000618	CUNH14orf28 (ENSVVUG00000000605)	KLHL28 (ENSVVUG00000000590)	TOGARAM1 (ENSVVUG00000000530)	PRPF39 (ENSVVUG00000000486)	ENSVVUG00000000462	MIS18BP1 (ENSVVUG00000000411) #8	FANCM (ENSVVUG00000000357) #7	ENSVVUG00000000326	ENSVVUG00000000157 #14	ENSVVUG00000000116 #14	ENSVVUG00000029871 #18	LRR1 (ENSVVUG00000029869)	RPL36AL (ENSVVUG00000029868)	MGAT2 (ENSVVUG00000029867) #22	DNAAF2 (ENSVVUG00000029866) #23	POLE2 (ENSVVUG00000029837) #24	KLHDC1 (ENSVVUG00000029835) #27	KLHDC2 (ENSVVUG00000029826) #28	NEMF (ENSVVUG00000029818) #29	ARF6 (ENSVVUG00000029816) #30	VCPKMT (ENSVVUG00000029815) #31	SOS2 (ENSVVUG00000029810) #32	L2HGDH (ENSVVUG00000029805) #36	ATP5S (ENSVVUG00000029802) #37	ENSVVUG00000029801	CDKL1 (ENSVVUG00000029800)	MAP4K5 (ENSVVUG00000029794)	ATL1 (ENSVVUG00000029790)	SAV1 (ENSVVUG00000029789)
Felidae	ANCESTRAL SPECIES	1	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000168422	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502.e #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Panthera	ANCESTRAL SPECIES	3	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000168422	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502.e.a #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT01100000264967	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000168422	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502.e.a #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
lion	MODERN SPECIES	6	ENSPLOG00000003829	C14orf28 (ENSPLOG00000003849)	KLHL28 (ENSPLOG00000003866)	TOGARAM1 (ENSPLOG00000003919)	PRPF39 (ENSPLOG00000003989)	ENSPLOG00000004019	FANCM (ENSPLOG00000004073) #7	MIS18BP1 (ENSPLOG00000004136) #8	ENSPLOG00000004181	RPL10L (ENSPLOG00000004189) #12	MDGA2 (ENSPLOG00000004208) #14	ENSPLOG00000004235	ENSPLOG00000004241 #18	LRR1 (ENSPLOG00000004257) #20	RPL36AL (ENSPLOG00000004270) #21	MGAT2 (ENSPLOG00000004277) #22	DNAAF2 (ENSPLOG00000004289) #23	POLE2 (ENSPLOG00000004310) #24	KLHDC1 (ENSPLOG00000000582) #27	KLHDC2 (ENSPLOG00000000674) #28	NEMF (ENSPLOG00000000814) #29	ARF6 (ENSPLOG00000000935) #30	VCPKMT (ENSPLOG00000000948) #31	SOS2 (ENSPLOG00000001026) #32	L2HGDH (ENSPLOG00000001197) #36	ENSPLOG00000001255 #37	CDKL1 (ENSPLOG00000001322)	MAP4K5 (ENSPLOG00000001362)	ATL1 (ENSPLOG00000001434)	SAV1 (ENSPLOG00000001522)	NIN (ENSPLOG00000001807)
Tiger	MODERN SPECIES	573			C14orf28 (ENSPTIG00000011534)	KLHL28 (ENSPTIG00000012193)	TOGARAM1 (ENSPTIG00000013498)	PRPF39 (ENSPTIG00000016764)	FKBP3 (ENSPTIG00000017977)	ENSPTIG00000018621 #7	ENSPTIG00000019875 #7	MIS18BP1 (ENSPTIG00000020259) #8	RPL10L (ENSPTIG00000006164) #12	MDGA2 (ENSPTIG00000006807) #14	ENSPTIG00000011658	ENSPTIG00000012253	LRR1 (ENSPTIG00000012978) #20	MGAT2 (ENSPTIG00000006247) #22	ENSPTIG00000014371 #23	POLE2 (ENSPTIG00000014797) #24	KLHDC1 (ENSPTIG00000019001) #27	KLHDC2 (ENSPTIG00000020283) #28	NEMF (ENSPTIG00000005569) #29	ARF6 (ENSPTIG00000006416) #30	VCPKMT (ENSPTIG00000007149) #31	SOS2 (ENSPTIG00000008451) #32	L2HGDH (ENSPTIG00000013340) #36	ENSPTIG00000016027 #37	CDKL1 (ENSPTIG00000016467)	MAP4K5 (ENSPTIG00000018022)	ATL1 (ENSPTIG00000019899)	SAV1 (ENSPTIG00000004576)	NIN (ENSPTIG00000005629)
Cat	MODERN SPECIES	237	FBXO33 (ENSFCAG00000024450)	LRFN5 (ENSFCAG00000012145)	CB3H14orf28 (ENSFCAG00000001384)	KLHL28 (ENSFCAG00000023398)	TOGARAM1 (ENSFCAG00000027683)	PRPF39 (ENSFCAG00000026797)	FKBP3 (ENSFCAG00000027304)	FANCM (ENSFCAG00000022146) #7	MIS18BP1 (ENSFCAG00000012599) #8	RPL10L (ENSFCAG00000014828) #12	MDGA2 (ENSFCAG00000029286) #14	ENSFCAG00000039280	ENSFCAG00000046197 #18	LRR1 (ENSFCAG00000032707) #20	RPL36AL (ENSFCAG00000026053) #21	MGAT2 (ENSFCAG00000022561) #22	DNAAF2 (ENSFCAG00000022138) #23	POLE2 (ENSFCAG00000009126) #24	KLHDC1 (ENSFCAG00000036283) #27	KLHDC2 (ENSFCAG00000031902) #28	NEMF (ENSFCAG00000018946) #29	ENSFCAG00000051973	VCPKMT (ENSFCAG00000025771) #31	SOS2 (ENSFCAG00000031655) #32	L2HGDH (ENSFCAG00000025658) #36	ENSFCAG00000029962 #37	CDKL1 (ENSFCAG00000029255)	MAP4K5 (ENSFCAG00000018425)	ATL1 (ENSFCAG00000028445)	SAV1 (ENSFCAG00000024173)	NIN (ENSFCAG00000022076)
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT01050000244818.s.a	ENSGT01090000260046	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Chiroptera	ANCESTRAL SPECIES	34	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT01050000244818.s.a	ENSGT01090000260046	ENSGT00940000154720.d #18	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT01050000244818.s.a	ENSGT01090000260046	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01030000234519.e.b	ENSGT00940000157475	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000156926	ENSGT00940000154905	ENSGT00390000014038	ENSGT00940000159572	ENSGT00390000008859.b.d
Greater horseshoe bat	MODERN SPECIES	24	C14orf28 (ENSRFEG00010006989)	KLHL28 (ENSRFEG00010007068)	TOGARAM1 (ENSRFEG00010007154)	PRPF39 (ENSRFEG00010007319)	ENSRFEG00010007384	FANCM (ENSRFEG00010007420) #7	MIS18BP1 (ENSRFEG00010007507) #8	ENSRFEG00010007654	MDGA2 (ENSRFEG00010007738) #14	ENSRFEG00010008061	ENSRFEG00010008085	ENSRFEG00010008114	ENSRFEG00010008166 #18	LRR1 (ENSRFEG00010008216) #20	RPL36AL (ENSRFEG00010008282) #21	MGAT2 (ENSRFEG00010008292) #22	DNAAF2 (ENSRFEG00010008313) #23	POLE2 (ENSRFEG00010008365) #24	KLHDC1 (ENSRFEG00010008482) #27	KLHDC2 (ENSRFEG00010008555) #28	NEMF (ENSRFEG00010008645) #29	ENSRFEG00010008792	TLE3 (ENSRFEG00010008825)	ENSRFEG00010009445	UACA (ENSRFEG00010009507)	LARP6 (ENSRFEG00010009619)	LRRC49 (ENSRFEG00010009664)	THSD4 (ENSRFEG00010010073)	NR2E3 (ENSRFEG00010010345)	MYO9A (ENSRFEG00010010731)	SENP8 (ENSRFEG00010010976)
Microbat	MODERN SPECIES	978													ENSMLUG00000013869	LRR1 (ENSMLUG00000013884) #20	POLE2 (ENSMLUG00000013914) #24	MGAT2 (ENSMLUG00000013895) #22	DNAAF2 (ENSMLUG00000013903) #23	KLHDC1 (ENSMLUG00000013921) #27	KLHDC2 (ENSMLUG00000011551) #28	NEMF (ENSMLUG00000011571) #29	ENSMLUG00000028316	TLE3 (ENSMLUG00000002275)	UACA (ENSMLUG00000010284)	ENSMLUG00000025327	LARP6 (ENSMLUG00000010319)	ENSMLUG00000015029	LRRC49 (ENSMLUG00000000025)	THSD4 (ENSMLUG00000007143)	NR2E3 (ENSMLUG00000008408)	MYO9A (ENSMLUG00000006117)	ENSMLUG00000024396
Megabat	MODERN SPECIES	3328													ENSPVAG00000013474	LRR1 (ENSPVAG00000013475) #20	ENSPVAG00000013479	MGAT2 (ENSPVAG00000013481) #22	DNAAF2 (ENSPVAG00000013485) #23	POLE2 (ENSPVAG00000013487) #24	KLHDC1 (ENSPVAG00000013490) #27	KLHDC2 (ENSPVAG00000013493) #28	NEMF (ENSPVAG00000013494) #29
Equus	ANCESTRAL SPECIES	54	ENSGT00950000182767.b.b.d	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000158830 #20	ENSGT00940000161656 #21	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT01090000260413	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Donkey	MODERN SPECIES	11	ENSEASG00005007639	C14orf28 (ENSEASG00005007641)	KLHL28 (ENSEASG00005007643)	TOGARAM1 (ENSEASG00005007669)	ENSEASG00005027716	PRPF39 (ENSEASG00005007761)	FKBP3 (ENSEASG00005007770)	FANCM (ENSEASG00005007781) #7	MIS18BP1 (ENSEASG00005007795) #8	RPL10L (ENSEASG00005007804) #12	MDGA2 (ENSEASG00005007808) #14	ENSEASG00005007816	ENSEASG00005029997 #18	LRR1 (ENSEASG00005007829) #20	ENSEASG00005031371	MGAT2 (ENSEASG00005007835) #22	ENSEASG00005030497 #23	POLE2 (ENSEASG00005007848) #24	KLHDC1 (ENSEASG00005007874) #27	KLHDC2 (ENSEASG00005007878) #28	NEMF (ENSEASG00005007919) #29	ARF6 (ENSEASG00005030715) #30	VCPKMT (ENSEASG00005008271) #31	SOS2 (ENSEASG00005008273) #32	L2HGDH (ENSEASG00005008274) #36	ENSEASG00005008276	ENSEASG00005008277 #37	CDKL1 (ENSEASG00005008282)	MAP4K5 (ENSEASG00005008285)	ATL1 (ENSEASG00005008291)	SAV1 (ENSEASG00005008294)
Horse	MODERN SPECIES		FSCB (ENSECAG00000006042)	C1H14orf28 (ENSECAG00000007020)	KLHL28 (ENSECAG00000008626)	ENSECAG00000004908	TOGARAM1 (ENSECAG00000011619)	PRPF39 (ENSECAG00000015289)	FKBP3 (ENSECAG00000018299)	FANCM (ENSECAG00000018694) #7	MIS18BP1 (ENSECAG00000004339) #8	RPL10L (ENSECAG00000004957) #12	MDGA2 (ENSECAG00000007565) #14	ENSECAG00000019402	ENSECAG00000052423 #18	LRR1 (ENSECAG00000011978) #20	ENSECAG00000032916 #21	MGAT2 (ENSECAG00000005166) #22	POLE2 (ENSECAG00000013298) #23	KLHDC1 (ENSECAG00000022174) #27	KLHDC2 (ENSECAG00000009997) #28	NEMF (ENSECAG00000017376) #29	ARF6 (ENSECAG00000005219) #30	VCPKMT (ENSECAG00000024379) #31	SOS2 (ENSECAG00000004420) #32	L2HGDH (ENSECAG00000020354) #36	ENSECAG00000005247	DMAC2L (ENSECAG00000022429) #37	CDKL1 (ENSECAG00000023015)	MAP4K5 (ENSECAG00000005718)	ATL1 (ENSECAG00000008487)	SAV1 (ENSECAG00000020643)	NIN (ENSECAG00000000578)
Atlantogenata	ANCESTRAL SPECIES	8	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Afrotheria	ANCESTRAL SPECIES	6	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Afrotheria_a	ANCESTRAL SPECIES	6	ENSGT00950000182767.b.b.d	ENSGT00390000017718	ENSGT00940000158296	ENSGT00730000111477	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00390000003897.s.b.a.a.a #12	ENSGT00940000155369.A #14	ENSGT00940000158830 #20	ENSGT00390000018085.a.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Elephant	MODERN SPECIES	602	LRFN5 (ENSLAFG00000018425)	ENSLAFG00000025848	C14orf28 (ENSLAFG00000022935)	KLHL28 (ENSLAFG00000006091)	TOGARAM1 (ENSLAFG00000006095)	PRPF39 (ENSLAFG00000003567)	ENSLAFG00000003572	FANCM (ENSLAFG00000001136) #7	MIS18BP1 (ENSLAFG00000001138) #8	RPL10L (ENSLAFG00000028278) #12	ENSLAFG00000029896 #14	ENSLAFG00000013371 #14	ENSLAFG00000027773	LRR1 (ENSLAFG00000002212) #20	ENSLAFG00000003419	MGAT2 (ENSLAFG00000003420) #22	DNAAF2 (ENSLAFG00000003422) #23	POLE2 (ENSLAFG00000003424) #24	KLHDC1 (ENSLAFG00000003427) #27	KLHDC2 (ENSLAFG00000003431) #28	NEMF (ENSLAFG00000003434) #29	ARF6 (ENSLAFG00000004279) #30	VCPKMT (ENSLAFG00000021497) #31	SOS2 (ENSLAFG00000008810) #32	L2HGDH (ENSLAFG00000013769) #36	DMAC2L (ENSLAFG00000013773) #37	CDKL1 (ENSLAFG00000013780)	MAP4K5 (ENSLAFG00000013799)	ATL1 (ENSLAFG00000013808)	SAV1 (ENSLAFG00000013815)	ENSLAFG00000029122
Tenrec	MODERN SPECIES	8987														ENSETEG00000016841	LRR1 (ENSETEG00000016846) #20	MGAT2 (ENSETEG00000016847) #22	ENSETEG00000016849 #23	ENSETEG00000016852 #23
Xenarthra	ANCESTRAL SPECIES	1020															ENSGT00390000018085.a.a.a.b	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27
Sloth	DUPLICATION
Sloth	MODERN SPECIES	10140															ENSCHOG00000009574	ENSCHOG00000009578 #22	ENSCHOG00000009583 #23
Sloth	MODERN SPECIES	9619																ENSCHOG00000013034 #22
Armadillo	MODERN SPECIES	3015													ENSDNOG00000032068	LRR1 (ENSDNOG00000002875) #20	ENSDNOG00000038609	MGAT2 (ENSDNOG00000002874) #22	DNAAF2 (ENSDNOG00000046106) #23	POLE2 (ENSDNOG00000011700) #24	KLHDC1 (ENSDNOG00000004376) #27
Marsupialia	ANCESTRAL SPECIES		ENSGT00940000160169	ENSGT00940000155076.a	ENSGT00940000155548	ENSGT00950000182900.A.b	ENSGT00390000014318	ENSGT00940000158846	ENSGT00390000003316.d	ENSGT00390000010094.a	ENSGT00950000183017.a	ENSGT00740000115643	ENSGT00940000157120	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00390000004717	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00390000004542	ENSGT00940000157933	ENSGT00390000013481.c.a	ENSGT00390000002030	ENSGT00940000161456	ENSGT00730000111340	ENSGT00940000157224
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00940000160169	ENSGT00940000155076.a	ENSGT00940000155548	ENSGT00950000182900.A.b	ENSGT00390000014318	ENSGT00940000158846	ENSGT00390000003316.d	ENSGT00390000010094.a	ENSGT00950000183017.a	ENSGT00740000115643	ENSGT00940000157120	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00390000004717	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00660000095541.a.b	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158296	ENSGT00940000155369.A #14	ENSGT00940000154940	ENSGT00390000001332
Diprotodontia	ANCESTRAL SPECIES	65	ENSGT00920000149143	ENSGT00940000160169	ENSGT00940000155076.a	ENSGT00940000155548	ENSGT00950000182900.A.b	ENSGT00390000014318	ENSGT00940000158846	ENSGT00390000003316.d	ENSGT00390000010094.a	ENSGT00950000183017.a	ENSGT00940000157120	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00390000004717	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00660000095541.a.b	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158296	ENSGT00940000155369.A #14	ENSGT00940000154940	ENSGT00390000002766.b.b.m
Diprotodontia_a	ANCESTRAL SPECIES	62	ENSGT00920000149143	ENSGT00940000160169	ENSGT00940000155076.a	ENSGT00940000155548	ENSGT00950000182900.A.b	ENSGT00390000014318	ENSGT00940000158846	ENSGT00390000003316.d.c.b	ENSGT00390000010094.a	ENSGT00950000183017.a	ENSGT00940000157120	ENSGT00940000158275	ENSGT00950000182808.a.a.b.a	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00390000004717.f	ENSGT00950000182834.A.a.a	ENSGT00390000008920.c.a	ENSGT00660000095541.a.b	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158296	ENSGT00940000155369.A #14	ENSGT00940000154940	ENSGT00390000002766.b.b.m
koala	MODERN SPECIES	105	ENSPCIG00000019894	ZFP36L1 (ENSPCIG00000019895)	ACTN1 (ENSPCIG00000019896)	DCAF5 (ENSPCIG00000010372)	EXD2 (ENSPCIG00000012390)	GALNT16 (ENSPCIG00000010369)	ENSPCIG00000010367	ENSPCIG00000010363	SLC39A9 (ENSPCIG00000010360)	PLEKHD1 (ENSPCIG00000010356)	SUSD6 (ENSPCIG00000011870)	SRSF5 (ENSPCIG00000011877)	SLC10A1 (ENSPCIG00000011880)	ENSPCIG00000034318 #18	LRR1 (ENSPCIG00000011885) #20	MGAT2 (ENSPCIG00000011889) #22	ENSPCIG00000011887 #23	POLE2 (ENSPCIG00000011901) #24	KLHDC1 (ENSPCIG00000012308) #27	KLHDC2 (ENSPCIG00000012310) #28	NEMF (ENSPCIG00000015034) #29	ENSPCIG00000012313	ENSPCIG00000012314	GMFB (ENSPCIG00000012315)	ENSPCIG00000012321	SAV1 (ENSPCIG00000012324)	ATL1 (ENSPCIG00000012325)	LRFN5 (ENSPCIG00000012328)	MDGA2 (ENSPCIG00000012334) #14	SNX6 (ENSPCIG00000009058)	ENSPCIG00000037042
Wallaby	MODERN SPECIES	14948																MGAT2 (ENSMEUG00000016278) #22
Tasmanian devil	MODERN SPECIES	1	ZFP36L1 (ENSSHAG00000021843)	ACTN1 (ENSSHAG00000012215)	DCAF5 (ENSSHAG00000025722)	EXD2 (ENSSHAG00000005008)	GALNT16 (ENSSHAG00000006715)	ERH (ENSSHAG00000022924)	SLC39A9 (ENSSHAG00000021009)	PLEKHD1 (ENSSHAG00000003621)	CCDC177 (ENSSHAG00000022157)	SUSD6 (ENSSHAG00000028499)	SRSF5 (ENSSHAG00000002871)	ENSSHAG00000003115	ENSSHAG00000025450	ENSSHAG00000031259 #18	ENSSHAG00000000730 #20	MGAT2 (ENSSHAG00000005935) #22	ENSSHAG00000031927 #23	ENSSHAG00000027619	KLHDC1 (ENSSHAG00000024075) #27	KLHDC2 (ENSSHAG00000007935) #28	ENSSHAG00000031482 #29	ENSSHAG00000008977	ENSSHAG00000009147	ENSSHAG00000020911	ENSSHAG00000003492	ENSSHAG00000005877	NID2 (ENSSHAG00000006301)	PTGDR (ENSSHAG00000001165)	TXNDC16 (ENSSHAG00000001610)	PSMC6 (ENSSHAG00000006344)	STYX (ENSSHAG00000028094)
Opossum	MODERN SPECIES		ZFP36L1 (ENSMODG00000010122)	ACTN1 (ENSMODG00000010180)	DCAF5 (ENSMODG00000010219)	EXD2 (ENSMODG00000010228)	GALNT16 (ENSMODG00000010265)	ENSMODG00000029745	ERH (ENSMODG00000010274)	SLC39A9 (ENSMODG00000050181)	PLEKHD1 (ENSMODG00000011302)	SUSD6 (ENSMODG00000011354)	SRSF5 (ENSMODG00000011362)	SLC10A1 (ENSMODG00000011367)	ENSMODG00000011372	ENSMODG00000011376 #18	LRR1 (ENSMODG00000011383) #20	MGAT2 (ENSMODG00000011389) #22	ENSMODG00000011405 #23	ENSMODG00000011437	KLHDC1 (ENSMODG00000011456) #27	KLHDC2 (ENSMODG00000011565) #28	NEMF (ENSMODG00000011586) #29	CDKN3 (ENSMODG00000011594)	CNIH1 (ENSMODG00000011634)	GMFB (ENSMODG00000011639)	CGRRF1 (ENSMODG00000011646)	SAMD4A (ENSMODG00000011669)	GCH1 (ENSMODG00000011684)	WDHD1 (ENSMODG00000011703)	SOCS4 (ENSMODG00000023917)	MAPK1IP1L (ENSMODG00000011715)	LGALS3 (ENSMODG00000011734)
Platypus	MODERN SPECIES	5	ENSOANG00000014010	FBXO33 (ENSOANG00000049571)	LRFN5 (ENSOANG00000014005)	C14orf28 (ENSOANG00000014003)	KLHL28 (ENSOANG00000014002)	TOGARAM1 (ENSOANG00000014001)	PRPF39 (ENSOANG00000014000)	FKBP3 (ENSOANG00000013999)	ENSOANG00000041010	ENSOANG00000013997 #7	ENSOANG00000013996 #8	ENSOANG00000042805 #8	MDGA2 (ENSOANG00000013995) #14	ENSOANG00000039070	LRR1 (ENSOANG00000013994) #20	MGAT2 (ENSOANG00000013993) #22	ENSOANG00000013991 #23	POLE2 (ENSOANG00000013989) #24	KLHDC1 (ENSOANG00000013988) #27	KLHDC2 (ENSOANG00000013987) #28	NEMF (ENSOANG00000013983) #29	ARF6 (ENSOANG00000041983) #30	VCPKMT (ENSOANG00000013981) #31	SOS2 (ENSOANG00000013979) #32	L2HGDH (ENSOANG00000013978) #36	DMAC2L (ENSOANG00000013977) #37	CDKL1 (ENSOANG00000050640)	MAP4K5 (ENSOANG00000013975)	ATL1 (ENSOANG00000013972)	SAV1 (ENSOANG00000038228)	ENSOANG00000038501
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Lepidosauria	ANCESTRAL SPECIES	32					ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Episquamata	ANCESTRAL SPECIES		ENSGT00390000011381	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000014666.b	ENSGT00940000156697	ENSGT00390000011381	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000164539	ENSGT00940000155369.A #14	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Common wall lizard	MODERN SPECIES		TOGARAM1 (ENSPMRG00000000013)	ENSPMRG00000000014	RGS3 (ENSPMRG00000000015)	PRPF39 (ENSPMRG00000000016)	FKBP3 (ENSPMRG00000000018)	ENSPMRG00000000019 #7	ENSPMRG00000000020	MDGA2 (ENSPMRG00000000021) #14	ENSPMRG00000000022	ENSPMRG00000000023	ENSPMRG00000000024	ENSPMRG00000000025	ENSPMRG00000000027	RPS29 (ENSPMRG00000000028) #18	LRR1 (ENSPMRG00000000030) #20	MGAT2 (ENSPMRG00000000031) #22	DNAAF2 (ENSPMRG00000000032) #23	POLE2 (ENSPMRG00000000033) #24	ENSPMRG00000000034	KLHDC1 (ENSPMRG00000000035) #27	KLHDC2 (ENSPMRG00000000036) #28	NEMF (ENSPMRG00000000037) #29	ARF6 (ENSPMRG00000000038) #30	VCPKMT (ENSPMRG00000000039) #31	SOS2 (ENSPMRG00000000040) #32	CDKL1 (ENSPMRG00000000041)	MAP4K5 (ENSPMRG00000000042)	ATL1 (ENSPMRG00000000067)	SAV1 (ENSPMRG00000000068)	NIN (ENSPMRG00000000075)	ENSPMRG00000000081
Argentine black and white tegu	MODERN SPECIES	39	CYB561 (ENSSMRG00000007502)	LRFN5 (ENSSMRG00000007519)	ENSSMRG00000007532	TMX1 (ENSSMRG00000007540)	KLHL28 (ENSSMRG00000007542)	TOGARAM1 (ENSSMRG00000007553)	PRPF39 (ENSSMRG00000007839)	FKBP3 (ENSSMRG00000007847)	FANCM (ENSSMRG00000007860) #7	ENSSMRG00000007885 #8	MDGA2 (ENSSMRG00000007962) #14	ENSSMRG00000007973	ENSSMRG00000007978 #18	ENSSMRG00000007980 #18	LRR1 (ENSSMRG00000007987) #20	MGAT2 (ENSSMRG00000007988) #22	DNAAF2 (ENSSMRG00000007990) #23	POLE2 (ENSSMRG00000007995) #24	KLHDC1 (ENSSMRG00000008435) #27	KLHDC2 (ENSSMRG00000008441) #28	NEMF (ENSSMRG00000008451) #29	ENSSMRG00000008686	ENSSMRG00000008689	ARF6 (ENSSMRG00000008691) #30	VCPKMT (ENSSMRG00000008692) #31	SOS2 (ENSSMRG00000008704) #32	L2HGDH (ENSSMRG00000009381) #36	DMAC2L (ENSSMRG00000009383) #37	CDKL1 (ENSSMRG00000009384)	MAP4K5 (ENSSMRG00000009387)	ATL1 (ENSSMRG00000009403)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00950000183112.b.b.b	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466.p #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000011381	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00950000183112.b.b.b	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466.p #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00390000011381	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00950000183112.b.b.b	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466.p #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00390000011381	ENSGT00950000183197.a	ENSGT00940000158296	ENSGT00940000155959	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00950000183112.b.b.b	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466.p #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Mainland tiger snake	MODERN SPECIES	35	CYB561 (ENSNSUG00000015372)	LRFN5 (ENSNSUG00000015371)	TMX1 (ENSNSUG00000015369)	KLHL28 (ENSNSUG00000015368)	TOGARAM1 (ENSNSUG00000015367)	PRPF39 (ENSNSUG00000015235)	FKBP3 (ENSNSUG00000015234)	FANCM (ENSNSUG00000015233) #7	ENSNSUG00000015232 #8	MDGA2 (ENSNSUG00000015231) #14	ENSNSUG00000015229	ENSNSUG00000015227 #18	ENSNSUG00000015226 #18	ENSNSUG00000015224	LRR1 (ENSNSUG00000015223) #20	MGAT2 (ENSNSUG00000015222) #22	DNAAF2 (ENSNSUG00000015221) #23	POLE2 (ENSNSUG00000015220) #24	KLHDC2 (ENSNSUG00000015219) #28	NEMF (ENSNSUG00000015120) #29	ARF6 (ENSNSUG00000015119) #30	VCPKMT (ENSNSUG00000015118) #31	SOS2 (ENSNSUG00000015117) #32	L2HGDH (ENSNSUG00000015102) #36	DMAC2L (ENSNSUG00000015101) #37	CDKL1 (ENSNSUG00000015100)	MAP4K5 (ENSNSUG00000015099)	ATL1 (ENSNSUG00000015098)	SAV1 (ENSNSUG00000015080)	NIN (ENSNSUG00000015079)	ABHD12B (ENSNSUG00000015078)
Eastern brown snake	MODERN SPECIES	10	LRFN5 (ENSPTXG00000000392)	TMX1 (ENSPTXG00000000371)	KLHL28 (ENSPTXG00000000359)	TOGARAM1 (ENSPTXG00000000260)	PRPF39 (ENSPTXG00000000212)	FKBP3 (ENSPTXG00000000177)	ENSPTXG00000000133 #7	ENSPTXG00000000094 #7	ENSPTXG00000000048 #8	ENSPTXG00000000037 #14	ENSPTXG00000002449 #14	ENSPTXG00000002448	ENSPTXG00000002446	ENSPTXG00000002444	LRR1 (ENSPTXG00000002443) #20	MGAT2 (ENSPTXG00000002441) #22	DNAAF2 (ENSPTXG00000002440) #23	POLE2 (ENSPTXG00000002402) #24	KLHDC1 (ENSPTXG00000002394) #27	KLHDC2 (ENSPTXG00000002390) #28	NEMF (ENSPTXG00000002387) #29	ARF6 (ENSPTXG00000002383) #30	VCPKMT (ENSPTXG00000002380) #31	SOS2 (ENSPTXG00000002372) #32	L2HGDH (ENSPTXG00000002366) #36	DMAC2L (ENSPTXG00000002363) #37	CDKL1 (ENSPTXG00000002359)	MAP4K5 (ENSPTXG00000002350)	ATL1 (ENSPTXG00000002347)	SAV1 (ENSPTXG00000002346)	NIN (ENSPTXG00000002345)
Indian cobra	MODERN SPECIES		ZNF511 (ENSNNAG00000005032)	CYB561 (ENSNNAG00000004990)	LRFN5 (ENSNNAG00000004968)	TMX1 (ENSNNAG00000004938)	KLHL28 (ENSNNAG00000004915)	TOGARAM1 (ENSNNAG00000004817)	PRPF39 (ENSNNAG00000010118)	FKBP3 (ENSNNAG00000010071)	ENSNNAG00000010032 #7	ENSNNAG00000009972 #7	MDGA2 (ENSNNAG00000009818) #14	ENSNNAG00000009781	RPS29 (ENSNNAG00000009758) #18	ENSNNAG00000009714 #18	LRR1 (ENSNNAG00000009691) #20	MGAT2 (ENSNNAG00000009680) #22	DNAAF2 (ENSNNAG00000009651) #23	POLE2 (ENSNNAG00000009565) #24	KLHDC1 (ENSNNAG00000009462) #27	KLHDC2 (ENSNNAG00000009372) #28	NEMF (ENSNNAG00000008606) #29	ARF6 (ENSNNAG00000008559) #30	VCPKMT (ENSNNAG00000008521) #31	SOS2 (ENSNNAG00000008384) #32	L2HGDH (ENSNNAG00000008044) #36	DMAC2L (ENSNNAG00000008001) #37	CDKL1 (ENSNNAG00000007960)	MAP4K5 (ENSNNAG00000007858)	ATL1 (ENSNNAG00000007571)	SAV1 (ENSNNAG00000007524)	NIN (ENSNNAG00000007415)
Archelosauria	ANCESTRAL SPECIES	2	ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Cryptodira	ANCESTRAL SPECIES	38				ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Testudinoidea	ANCESTRAL SPECIES	3				ENSGT00390000012377	ENSGT00940000158586.m	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Emydidae	ANCESTRAL SPECIES	43					ENSGT00390000012377	ENSGT00940000158586.m	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
painted turtle	MODERN SPECIES	772			C14orf28 (ENSCPBG00000015249)	KLHL28 (ENSCPBG00000015246)	TOGARAM1 (ENSCPBG00000015120)	PRPF39 (ENSCPBG00000015103)	FKBP3 (ENSCPBG00000015100)	ENSCPBG00000015098	FANCM (ENSCPBG00000015089) #7	ENSCPBG00000015088 #8	ENSCPBG00000015087	MDGA2 (ENSCPBG00000015082) #14	ENSCPBG00000015078 #18	ENSCPBG00000015076	LRR1 (ENSCPBG00000015072) #20	MGAT2 (ENSCPBG00000015070) #22	DNAAF2 (ENSCPBG00000015069) #23	POLE2 (ENSCPBG00000015065) #24	KLHDC1 (ENSCPBG00000015062) #27	KLHDC2 (ENSCPBG00000015047) #28	NEMF (ENSCPBG00000015043) #29
Three-toed box turtle	MODERN SPECIES	87					C14orf28 (ENSTMTG00000007430)	TOGARAM1 (ENSTMTG00000007306)	PRPF39 (ENSTMTG00000007220)	FKBP3 (ENSTMTG00000007202)	ENSTMTG00000007178	FANCM (ENSTMTG00000007100) #7	ENSTMTG00000007059 #8	ENSTMTG00000007045	MDGA2 (ENSTMTG00000006941) #14	ENSTMTG00000006915 #18	LRR1 (ENSTMTG00000006880) #20	MGAT2 (ENSTMTG00000006852) #22	DNAAF2 (ENSTMTG00000006837) #23	POLE2 (ENSTMTG00000006153) #24	KLHDC1 (ENSTMTG00000005810) #27	KLHDC2 (ENSTMTG00000005753) #28	NEMF (ENSTMTG00000005627) #29	ARF6 (ENSTMTG00000005604) #30	VCPKMT (ENSTMTG00000005588) #31	SOS2 (ENSTMTG00000003922) #32	L2HGDH (ENSTMTG00000003771) #36	DMAC2L (ENSTMTG00000003758) #37	CDKL1 (ENSTMTG00000003734)	MAP4K5 (ENSTMTG00000003665)	ATL1 (ENSTMTG00000003503)	SAV1 (ENSTMTG00000003457)	NIN (ENSTMTG00000003083)
Testudinidae	ANCESTRAL SPECIES	43				ENSGT00390000012377	ENSGT00940000158586.m	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00940000164539	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Goode s thornscrub tortoise	MODERN SPECIES	18	ENSGEVG00005003036	ENSGEVG00005003048	C14orf28 (ENSGEVG00005003064)	KLHL28 (ENSGEVG00005003078)	TOGARAM1 (ENSGEVG00005003234)	PRPF39 (ENSGEVG00005003503)	FKBP3 (ENSGEVG00005003597)	FANCM (ENSGEVG00005003620) #7	ENSGEVG00005003641	ENSGEVG00005003668 #8	ENSGEVG00005003684	MDGA2 (ENSGEVG00005003694) #14	ENSGEVG00005003711	ENSGEVG00005003718	LRR1 (ENSGEVG00005003747) #20	MGAT2 (ENSGEVG00005003761) #22	DNAAF2 (ENSGEVG00005003771) #23	POLE2 (ENSGEVG00005003788) #24	KLHDC1 (ENSGEVG00005003825) #27	KLHDC2 (ENSGEVG00005003846) #28	NEMF (ENSGEVG00005003871) #29	ENSGEVG00005003966	ARF6 (ENSGEVG00005000334) #30	VCPKMT (ENSGEVG00005000350) #31	SOS2 (ENSGEVG00005000378) #32	L2HGDH (ENSGEVG00005000420) #36	DMAC2L (ENSGEVG00005000443) #37	CDKL1 (ENSGEVG00005000476)	MAP4K5 (ENSGEVG00005000524)	ENSGEVG00005000618	ENSGEVG00005000638
Abingdon island giant tortoise	MODERN SPECIES	2659											RPS29 (ENSCABG00000005956) #18	ENSCABG00000005958	ENSCABG00000005961	ENSCABG00000005965	LRR1 (ENSCABG00000005972) #20	MGAT2 (ENSCABG00000005985) #22	DNAAF2 (ENSCABG00000005987) #23	POLE2 (ENSCABG00000005993) #24	KLHDC1 (ENSCABG00000006120) #27	KLHDC2 (ENSCABG00000006136) #28	NEMF (ENSCABG00000006140) #29	ENSCABG00000006284	ENSCABG00000006287
Chinese turtle	MODERN SPECIES	885				C14orf28 (ENSPSIG00000009799)	KLHL28 (ENSPSIG00000010005)	TOGARAM1 (ENSPSIG00000010288)	PRPF39 (ENSPSIG00000010911)	FKBP3 (ENSPSIG00000012416)	FANCM (ENSPSIG00000014451) #7	ENSPSIG00000016672	MIS18BP1 (ENSPSIG00000017031) #8	ENSPSIG00000005710	MDGA2 (ENSPSIG00000005986) #14	ENSPSIG00000006836	LRR1 (ENSPSIG00000007235) #20	MGAT2 (ENSPSIG00000007276) #22	POLE2 (ENSPSIG00000007383) #24	KLHDC1 (ENSPSIG00000010671) #27	NEMF (ENSPSIG00000011080) #29	KLHDC2 (ENSPSIG00000012183) #28
Archosauria	ANCESTRAL SPECIES	5		ENSGT00940000158296	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000168019	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Aves	ANCESTRAL SPECIES	2					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Neognathae	ANCESTRAL SPECIES	4					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601	ENSGT00940000158704
Neognathae_b	ANCESTRAL SPECIES	6					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601	ENSGT00940000158704
Neognathae_c	ANCESTRAL SPECIES	6				ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000164539	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00960000191450	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT01060000249343	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106
Golden eagle	MODERN SPECIES	11			LRFN5 (ENSACCG00020001141)	ENSACCG00020001150	KLHL28 (ENSACCG00020001163)	TOGARAM1 (ENSACCG00020001268)	PRPF39 (ENSACCG00020001428)	FKBP3 (ENSACCG00020001474)	FANCM (ENSACCG00020001518) #7	ENSACCG00020001555	MDGA2 (ENSACCG00020001624) #14	RPS29 (ENSACCG00020001715) #18	ENSACCG00020001730	ENSACCG00020001740	LRR1 (ENSACCG00020001755) #20	MGAT2 (ENSACCG00020001766) #22	DNAAF2 (ENSACCG00020001791) #23	POLE2 (ENSACCG00020001828) #24	KLHDC1 (ENSACCG00020001858) #27	KLHDC2 (ENSACCG00020001884) #28	NEMF (ENSACCG00020001915) #29	ENSACCG00020001949	ARF6 (ENSACCG00020001975) #30	VCPKMT (ENSACCG00020001991) #31	SOS2 (ENSACCG00020002028) #32	L2HGDH (ENSACCG00020002118) #36	DMAC2L (ENSACCG00020002155) #37	CDKL1 (ENSACCG00020002172)	MAP4K5 (ENSACCG00020002226)	ATL1 (ENSACCG00020002300)	SAV1 (ENSACCG00020002328)
Kakapo	MODERN SPECIES	21	SYNJ2BP (ENSSHBG00005007206)	ENSSHBG00005007182	ENSSHBG00005007158	LRFN5 (ENSSHBG00005007143)	KLHL28 (ENSSHBG00005007110)	ENSSHBG00005007100	PRPF39 (ENSSHBG00005007060)	FKBP3 (ENSSHBG00005007038)	ENSSHBG00005007024	FANCM (ENSSHBG00005006998) #7	ENSSHBG00005006959 #8	MDGA2 (ENSSHBG00005006917) #14	RPS29 (ENSSHBG00005006888) #18	ENSSHBG00005006875	LRR1 (ENSSHBG00005006851) #20	MGAT2 (ENSSHBG00005006837) #22	DNAAF2 (ENSSHBG00005006809) #23	POLE2 (ENSSHBG00005006793) #24	KLHDC1 (ENSSHBG00005006773) #27	KLHDC2 (ENSSHBG00005006741) #28	NEMF (ENSSHBG00005005239) #29	ENSSHBG00005005125	ENSSHBG00005005119	ARF6 (ENSSHBG00005005113) #30	VCPKMT (ENSSHBG00005005109) #31	SOS2 (ENSSHBG00005005105) #32	L2HGDH (ENSSHBG00005005097) #36	DMAC2L (ENSSHBG00005005089) #37	CDKL1 (ENSSHBG00005005083)	MAP4K5 (ENSSHBG00005005077)	ATL1 (ENSSHBG00005005065)
Passeriformes	ANCESTRAL SPECIES	5					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480.pb #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00960000189957	ENSGT00960000191450	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601
Great tit	MODERN SPECIES	25		LRFN5 (ENSPMJG00000013941)	KLHL28 (ENSPMJG00000013931)	TOGARAM1 (ENSPMJG00000013924)	PRPF39 (ENSPMJG00000013911)	FKBP3 (ENSPMJG00000013910)	ENSPMJG00000013909	ENSPMJG00000013908 #7	ENSPMJG00000013907 #7	ENSPMJG00000013906 #8	ENSPMJG00000013877 #14	ENSPMJG00000013876 #14	ENSPMJG00000013864	ENSPMJG00000013862	LRR1 (ENSPMJG00000013857) #20	MGAT2 (ENSPMJG00000013855) #22	DNAAF2 (ENSPMJG00000013854) #23	POLE2 (ENSPMJG00000013700) #24	KLHDC1 (ENSPMJG00000013697) #27	KLHDC2 (ENSPMJG00000013695) #28	NEMF (ENSPMJG00000013694) #29	ENSPMJG00000013691	ENSPMJG00000013690	ARF6 (ENSPMJG00000013689) #30	VCPKMT (ENSPMJG00000013688) #31	SOS2 (ENSPMJG00000013687) #32	L2HGDH (ENSPMJG00000013680) #36	DMAC2L (ENSPMJG00000013671) #37	CDKL1 (ENSPMJG00000013653)	MAP4K5 (ENSPMJG00000013651)	ATL1 (ENSPMJG00000013369)
Passeriformes_d	ANCESTRAL SPECIES	5				ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033.cb	ENSGT00940000154514	ENSGT00940000156480.qb #7	ENSGT00940000164539	ENSGT00940000156480.pb #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00960000189957	ENSGT00960000191450	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601
Passeriformes_g	ANCESTRAL SPECIES					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033.cb	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480.pb #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00970000197471	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00960000189957	ENSGT00960000191450	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601
Passeroidea	ANCESTRAL SPECIES	1					ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033.cb	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480.pb #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00960000189957	ENSGT00960000191450	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601
Zebra finch	MODERN SPECIES	27				LRFN5 (ENSTGUG00000013241)	KLHL28 (ENSTGUG00000013239)	TOGARAM1 (ENSTGUG00000013237)	PRPF39 (ENSTGUG00000013235)	FKBP3 (ENSTGUG00000013231)	ENSTGUG00000013230	FANCM (ENSTGUG00000013226) #7	ENSTGUG00000013225 #8	MDGA2 (ENSTGUG00000013218) #14	RPS29 (ENSTGUG00000021284) #18	ENSTGUG00000021951	LRR1 (ENSTGUG00000013217) #20	MGAT2 (ENSTGUG00000028451) #22	DNAAF2 (ENSTGUG00000026992) #23	POLE2 (ENSTGUG00000013211) #24	KLHDC1 (ENSTGUG00000013206) #27	KLHDC2 (ENSTGUG00000013199) #28	ENSTGUG00000020114	ENSTGUG00000029401	ARF6 (ENSTGUG00000013196) #30	VCPKMT (ENSTGUG00000013194) #31	SOS2 (ENSTGUG00000013184) #32	L2HGDH (ENSTGUG00000013182) #36	DMAC2L (ENSTGUG00000013180) #37	CDKL1 (ENSTGUG00000013175)	MAP4K5 (ENSTGUG00000013168)	ATL1 (ENSTGUG00000013160)	SAV1 (ENSTGUG00000026733)
Flycatcher	MODERN SPECIES	24	ENSFALG00000028555	ENSFALG00000001677	ENSFALG00000001710	FKBP3 (ENSFALG00000001688)	ENSFALG00000026786 #7	ENSFALG00000026173	ENSFALG00000027761 #7	ENSFALG00000001716 #8	ENSFALG00000023703 #14	ENSFALG00000028048 #14	ENSFALG00000027590 #14	ENSFALG00000026927 #18	ENSFALG00000025298	ENSFALG00000025590	ENSFALG00000001743	MGAT2 (ENSFALG00000001742) #22	POLE2 (ENSFALG00000001755) #24	KLHDC1 (ENSFALG00000001768) #27	KLHDC2 (ENSFALG00000001772) #28	NEMF (ENSFALG00000001783) #29	ENSFALG00000028030	ENSFALG00000025644 #18	ARF6 (ENSFALG00000014477) #30	VCPKMT (ENSFALG00000001814) #31	ENSFALG00000023876	SOS2 (ENSFALG00000001823) #32	L2HGDH (ENSFALG00000001839) #36	DMAC2L (ENSFALG00000001845) #37	CDKL1 (ENSFALG00000001849)	MAP4K5 (ENSFALG00000001852)	ATL1 (ENSFALG00000001855)
Galloanserae	ANCESTRAL SPECIES	4						ENSGT00940000158296	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT01100000264601	ENSGT00940000158704	ENSGT00940000156106
Anatidae	ANCESTRAL SPECIES	9							ENSGT00940000158296	ENSGT00940000158586.k	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516.k #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a.g	ENSGT00940000158072	ENSGT01100000264601	ENSGT00940000158704	ENSGT00940000156106
Duck	MODERN SPECIES	23							LRFN5 (ENSAPLG00000010482)	ENSAPLG00000025251	ENSAPLG00000010672	PRPF39 (ENSAPLG00000010785)	FKBP3 (ENSAPLG00000011063)	ENSAPLG00000011473	FANCM (ENSAPLG00000011095) #7	MIS18BP1 (ENSAPLG00000011593) #8	MDGA2 (ENSAPLG00000014673) #14	MGAT2 (ENSAPLG00000029220) #22	DNAAF2 (ENSAPLG00000027399) #23	POLE2 (ENSAPLG00000007393) #24	KLHDC1 (ENSAPLG00000007007) #27	KLHDC2 (ENSAPLG00000006886) #28	ENSAPLG00000005844 #29	VCPKMT (ENSAPLG00000005825) #31	SOS2 (ENSAPLG00000005327) #32	ENSAPLG00000030510	ENSAPLG00000017746	MAP4K5 (ENSAPLG00000003947)	ENSAPLG00000029510	ENSAPLG00000025401	ATL1 (ENSAPLG00000003351)	SAV1 (ENSAPLG00000003206)	NIN (ENSAPLG00000002459)
Pink-footed goose	MODERN SPECIES	56											MDGA2 (ENSABRG00000013169) #14	ENSABRG00000013192	RPS29 (ENSABRG00000013195) #18	ENSABRG00000013206	ENSABRG00000013216	MGAT2 (ENSABRG00000013225) #22	ENSABRG00000013234 #23	POLE2 (ENSABRG00000013252) #24	KLHDC1 (ENSABRG00000013360) #27	KLHDC2 (ENSABRG00000013425) #28	NEMF (ENSABRG00000013666) #29	ENSABRG00000013855	ARF6 (ENSABRG00000013867) #30	VCPKMT (ENSABRG00000013875) #31	SOS2 (ENSABRG00000013960) #32	L2HGDH (ENSABRG00000014683) #36	DMAC2L (ENSABRG00000014715) #37	CDKL1 (ENSABRG00000014732)	MAP4K5 (ENSABRG00000000528)	ATL1 (ENSABRG00000003944)	SAV1 (ENSABRG00000004029)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00530000064222.b	ENSGT00940000158652	ENSGT00940000157224	ENSGT00730000111340	ENSGT00940000161456	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000004542	ENSGT00390000008920.c.a	ENSGT00950000182834.A.a.a	ENSGT00390000004717	ENSGT00940000155369.A #14	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000158652	ENSGT00940000157224	ENSGT00730000111340	ENSGT00940000161456	ENSGT00390000002030	ENSGT00390000013481.c.a	ENSGT00940000157933	ENSGT00390000004542	ENSGT00390000008920.c.a	ENSGT00950000182834.A.a.a	ENSGT00390000004717	ENSGT00940000154720 #18	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156593 #30	ENSGT00940000157135 #31	ENSGT00940000158324 #32	ENSGT00490000043421 #36	ENSGT00940000156502 #37	ENSGT00940000159132.a	ENSGT00940000158072	ENSGT00940000158704	ENSGT00940000156106	ENSGT00660000095541.a.b
Chicken	MODERN SPECIES	34	MDGA2 (ENSGALG00010018983) #14	ENSGALG00010020068	ENSGALG00010020077	ENSGALG00010020086	ENSGALG00010020093	ENSGALG00010020099	ENSGALG00010020105	ENSGALG00010020107	ENSGALG00010020110	ENSGALG00010020114	ENSGALG00010020119	ENSGALG00010020122	ENSGALG00010020124	RPS29 (ENSGALG00010018998) #18	LRR1 (ENSGALG00010019021) #20	MGAT2 (ENSGALG00010020129) #22	DNAAF2 (ENSGALG00010019025) #23	POLE2 (ENSGALG00010019101) #24	KLHDC1 (ENSGALG00010019113) #27	KLHDC2 (ENSGALG00010019146) #28	NEMF (ENSGALG00010019172) #29	ENSGALG00010020133	ARF6 (ENSGALG00010019204) #30	VCPKMT (ENSGALG00010019209) #31	SOS2 (ENSGALG00010019232) #32	L2HGDH (ENSGALG00010019259) #36	ATP5S (ENSGALG00010019266) #37	CDKL1 (ENSGALG00010019271)	MAP4K5 (ENSGALG00010019295)	ATL1 (ENSGALG00010019334)	SAV1 (ENSGALG00010019350)
Japanese quail	MODERN SPECIES	23	SOCS4 (ENSCJPG00005006240)	WDHD1 (ENSCJPG00005006242)	GCH1 (ENSCJPG00005006250)	SAMD4A (ENSCJPG00005006252)	CGRRF1 (ENSCJPG00005006258)	GMFB (ENSCJPG00005006265)	CNIH1 (ENSCJPG00005006270)	CDKN3 (ENSCJPG00005006275)	MDGA2 (ENSCJPG00005006314) #14	ENSCJPG00005006335	RPS29 (ENSCJPG00005006375) #18	ENSCJPG00005006380	ENSCJPG00005006384	ENSCJPG00005006387	ENSCJPG00005006388	MGAT2 (ENSCJPG00005006389) #22	ENSCJPG00005006390 #23	POLE2 (ENSCJPG00005006404) #24	KLHDC1 (ENSCJPG00005006635) #27	KLHDC2 (ENSCJPG00005006648) #28	NEMF (ENSCJPG00005006660) #29	ENSCJPG00005006954	ARF6 (ENSCJPG00005006959) #30	VCPKMT (ENSCJPG00005006962) #31	SOS2 (ENSCJPG00005006965) #32	L2HGDH (ENSCJPG00005007283) #36	DMAC2L (ENSCJPG00005007298) #37	ENSCJPG00005007299	MAP4K5 (ENSCJPG00005007300)	ATL1 (ENSCJPG00005007643)	SAV1 (ENSCJPG00005007830)
Anura	ANCESTRAL SPECIES	140				ENSGT00950000182767.b.b	ENSGT00390000017718	ENSGT00940000158296	ENSGT00940000168268	ENSGT00390000005033	ENSGT00390000012377	ENSGT00940000158586	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00390000012435 #24	ENSGT00940000157509 #27	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000156106	ENSGT00940000158704	ENSGT00940000158072	ENSGT00940000159132.a	ENSGT00940000156502 #37	ENSGT00490000043421 #36	ENSGT00940000158324 #32	ENSGT00940000157135 #31	ENSGT00940000156593 #30
Leishan spiny toad	MODERN SPECIES	4	ALDH6A1 (ENSLLEG00000016549)	ENTPD5 (ENSLLEG00000016244)	COQ6 (ENSLLEG00000015946)	ENSLLEG00000015879	ENSLLEG00000015701	MRPL17 (ENSLLEG00000015487)	ENSLLEG00000015158 #8	ENSLLEG00000015129	ENSLLEG00000015087	ENSLLEG00000015062	MDGA2 (ENSLLEG00000014636) #14	ENSLLEG00000014600	ENSLLEG00000014570	ENSLLEG00000014524	LRR1 (ENSLLEG00000014474) #20	MGAT2 (ENSLLEG00000014452) #22	ENSLLEG00000014435	ENSLLEG00000014413	ENSLLEG00000014384	ENSLLEG00000014362	ENSLLEG00000014345	ENSLLEG00000014322	ENSLLEG00000014300	ENSLLEG00000014270	VRK1 (ENSLLEG00000014200)	ENSLLEG00000014162	PAPOLA (ENSLLEG00000013930)	ENSLLEG00000013753	ENSLLEG00000013692	GSKIP (ENSLLEG00000013661)	ATG2B (ENSLLEG00000013099)
Frog	MODERN SPECIES	8	fermt2 (ENSXETG00000030567)	gnpnat1 (ENSXETG00000025513)	styx (ENSXETG00000025514)	psmc6 (ENSXETG00000008628)	ENSXETG00000043839	arf6.2 (ENSXETG00000000038) #30	ENSXETG00000044617	vcpkmt (ENSXETG00000037439) #31	ENSXETG00000046230	mdga2 (ENSXETG00000023850) #14	ENSXETG00000048674	ENSXETG00000038556	ENSXETG00000049121	rps29 (ENSXETG00000034554) #18	lrr1 (ENSXETG00000009119) #20	mgat2 (ENSXETG00000009121) #22	dnaaf2 (ENSXETG00000009122) #23	pole2 (ENSXETG00000009123) #24	ENSXETG00000045509	klhdc1 (ENSXETG00000027737) #27	klhdc2 (ENSXETG00000009125) #28	nemf (ENSXETG00000027739) #29	sav1 (ENSXETG00000027740)	atl1 (ENSXETG00000009126)	ENSXETG00000044692	a2ml1 (ENSXETG00000009127)	sos2 (ENSXETG00000009131) #32	ENSXETG00000048869	l2hgdh (ENSXETG00000019714) #36	dmac2l (ENSXETG00000019713) #37	cdkl1 (ENSXETG00000019709)
Coelacanth	MODERN SPECIES	267									ENSLACG00000000845	HECW2 (ENSLACG00000009094)	GTF3C3 (ENSLACG00000012329)	PGAP1 (ENSLACG00000013127)	ENSLACG00000013757	ENSLACG00000013926	SF3B1 (ENSLACG00000014832)	MGAT2 (ENSLACG00000015114) #22	COQ10B (ENSLACG00000015175)	HSPD1 (ENSLACG00000015296)	HSPE1 (ENSLACG00000015377)	MOB4 (ENSLACG00000015430)	RFTN2 (ENSLACG00000015529)	ENSLACG00000015721	BOLL (ENSLACG00000015867)	PLCL1 (ENSLACG00000016887)	SATB2 (ENSLACG00000017798)	ftcdnl1 (ENSLACG00000018033)	C2orf69 (ENSLACG00000018043)	TYW5 (ENSLACG00000018061)	MAIP1 (ENSLACG00000018077)	SPATS2L (ENSLACG00000018167)	KCTD18 (ENSLACG00000018201)
Actinopterygii	ANCESTRAL SPECIES	56	ENSGT00940000156593 #30	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT01030000235595	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00940000157509 #27	ENSGT00390000012435 #24	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b.d	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.a	ENSGT01020000230401.a.a.b.b	ENSGT01030000234906	ENSGT01020000230703	ENSGT01030000235064	ENSGT00940000156103	ENSGT01030000234620.a.a.a.a.a.b
Neopterygii	ANCESTRAL SPECIES		ENSGT00940000157135 #31	ENSGT00940000156593 #30	ENSGT00390000012377	ENSGT00940000158586	ENSGT00940000158712	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00940000157509 #27	ENSGT00390000012435 #24	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01030000235064	ENSGT00940000156103	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000154482.b.b.a	ENSGT00940000154225.b	ENSGT00940000165081	ENSGT00530000063583.a.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	13	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A	ENSGT00940000157826	ENSGT00940000177766	ENSGT00390000013448.a.b	ENSGT00940000154763	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00940000157509.a #27	ENSGT00390000012435 #24	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.a	ENSGT00990000204360	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000154482.b.b.a.c	ENSGT00940000154225.b	ENSGT00940000165081.a	ENSGT00530000063583.a.a.a	ENSGT00940000173691
Osteoglossiformes	ANCESTRAL SPECIES	25	ENSGT00950000183032.B.b.a	ENSGT00420000029802	ENSGT00940000159551	ENSGT00390000001205.b	ENSGT00940000153887.A	ENSGT00940000157826.a	ENSGT00390000013448.a.b	ENSGT00940000154763	ENSGT00390000008684	ENSGT00390000007395 #8	ENSGT00530000069038	ENSGT00940000180386	ENSGT00940000155369.A #14	ENSGT00940000161931	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00510000048466 #23	ENSGT00940000157509.a #27	ENSGT00390000012435 #24	ENSGT00940000157150 #28	ENSGT00390000018516 #29	ENSGT00940000159582	ENSGT00390000007686.b.c.a.a	ENSGT01020000230401.a.a.b.a.a.h	ENSGT00940000156103	ENSGT01030000234906	ENSGT01050000246283	ENSGT00990000204360	ENSGT01030000234620.a.a.a.a.a.b	ENSGT00940000154482.b.b.a.c	ENSGT00940000154225.b
P. kingsleyae	MODERN SPECIES	24	pcmtl (ENSPKIG00000022992)	rpusd2 (ENSPKIG00000023017)	disp2 (ENSPKIG00000023026)	ENSPKIG00000023036	eml1 (ENSPKIG00000023076)	evla (ENSPKIG00000023178)	degs2 (ENSPKIG00000023263)	yy1b (ENSPKIG00000023281)	tpp1 (ENSPKIG00000023305)	ENSPKIG00000023343 #8	ENSPKIG00000023376	ENSPKIG00000023388	MDGA2 (ENSPKIG00000023429) #14	ENSPKIG00000023490	lrr1 (ENSPKIG00000023508) #20	mgat2 (ENSPKIG00000023527) #22	dnaaf2 (ENSPKIG00000023536) #23	ENSPKIG00000023562 #27	pole2 (ENSPKIG00000023629) #24	KLHDC2 (ENSPKIG00000023673) #28	ENSPKIG00000023704 #29	ENSPKIG00000023715 #29	MOK (ENSPKIG00000023740)	WDR20 (ENSPKIG00000023768)	hsp90aa1.2 (ENSPKIG00000023794)	DYNC1H1 (ENSPKIG00000023864)	ENSPKIG00000023919	ENSPKIG00000023924	ENSPKIG00000000656	DIO3 (ENSPKIG00000000678)	DLK1 (ENSPKIG00000000692)
Asian bonytongue	MODERN SPECIES	6	pcmtl (ENSSFOG00015019062)	rpusd2 (ENSSFOG00015019057)	disp2 (ENSSFOG00015019033)	ENSSFOG00015019043	ENSSFOG00015019022	eml1 (ENSSFOG00015018928)	evlb (ENSSFOG00015028389)	degs2 (ENSSFOG00015018888)	yy1b (ENSSFOG00015018880)	tpp1 (ENSSFOG00015018856)	ENSSFOG00015018841 #8	ENSSFOG00015029308	MDGA2 (ENSSFOG00015018757) #14	ENSSFOG00015027843	lrr1 (ENSSFOG00015018704) #20	mgat2 (ENSSFOG00015018695) #22	dnaaf2 (ENSSFOG00015025895) #23	ENSSFOG00015018608 #27	pole2 (ENSSFOG00015018558) #24	KLHDC2 (ENSSFOG00015018524) #28	NEMF (ENSSFOG00015018471) #29	MOK (ENSSFOG00015031306)	WDR20 (ENSSFOG00015018427)	HSP90AA1 (ENSSFOG00015018365)	DYNC1H1 (ENSSFOG00015018194)	ENSSFOG00015018345	ENSSFOG00015018338	ENSSFOG00015018140	ENSSFOG00015018132	ENSSFOG00015018119	DLK1 (ENSSFOG00015018107)
Clupeocephala	ANCESTRAL SPECIES	106	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00940000157766.b.a	ENSGT00940000159694.a	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b
Otomorpha	ANCESTRAL SPECIES	162	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00940000155014.xb.b	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976
Clupeiformes	ANCESTRAL SPECIES	130	ENSGT00940000167216	ENSGT00630000089942	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B
Denticle herring	MODERN SPECIES	5	ENSDCDG00000027077	znf410 (ENSDCDG00000027074)	ENSDCDG00000027073	ENSDCDG00000027072	actr10 (ENSDCDG00000027064)	ENSDCDG00000027061	NAA30 (ENSDCDG00000027058)	ENSDCDG00000027056	ENSDCDG00000027055	arf6a (ENSDCDG00000027054) #30	prpf39 (ENSDCDG00000026934)	faua (ENSDCDG00000026925)	FKBP3 (ENSDCDG00000026922)	MDGA2 (ENSDCDG00000026523) #14	ENSDCDG00000026504	mgat2 (ENSDCDG00000026503) #22	WDR20 (ENSDCDG00000026499)	hsp90aa1.2 (ENSDCDG00000026024)	ENSDCDG00000026005	ppp2r5cb (ENSDCDG00000020612)	DIO3 (ENSDCDG00000020515)	ENSDCDG00000020514	slc25a29 (ENSDCDG00000020513)	ENSDCDG00000020511	myh6 (ENSDCDG00000020510)	pak6b (ENSDCDG00000020509)	ENSDCDG00000020508	ENSDCDG00000020506	hpcal1 (ENSDCDG00000020491)	pdia6 (ENSDCDG00000020444)	otofa (ENSDCDG00000020229)
Atlantic herring	MODERN SPECIES	6	wtap (ENSCHAG00000024098)	sod2 (ENSCHAG00000024076)	ENSCHAG00000024071	GOLT1B (ENSCHAG00000024066)	FNDC1 (ENSCHAG00000023976)	ENSCHAG00000023973	otofa (ENSCHAG00000023495)	pdia6 (ENSCHAG00000022895)	hpcal1 (ENSCHAG00000022860)	ENSCHAG00000022735	ENSCHAG00000022706	ENSCHAG00000022619	ENSCHAG00000022570	MDGA2 (ENSCHAG00000022235) #14	ENSCHAG00000022209	mgat2 (ENSCHAG00000022193) #22	WDR20 (ENSCHAG00000022188)	hsp90aa1.2 (ENSCHAG00000018997)	ENSCHAG00000021898	ENSCHAG00000018964	ENSCHAG00000018958	slc25a47a (ENSCHAG00000018918)	slc25a29 (ENSCHAG00000018886)	myh6 (ENSCHAG00000018862)	pak6b (ENSCHAG00000018854)	ENSCHAG00000018823	ENSCHAG00000017297	ENSCHAG00000017283	EPM2A (ENSCHAG00000017280)	ENSCHAG00000017276	GRM1 (ENSCHAG00000017266)
Otophysi	ANCESTRAL SPECIES	151	ENSGT00630000089942	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00940000155014.xb.b	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593.qc #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976
Cyprinoidei	ANCESTRAL SPECIES	57	ENSGT00630000089942	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00940000163253.b.d.a.a	ENSGT00910000144250	ENSGT00390000012816	ENSGT00950000183050.b.b.b.a.b.a.d.c	ENSGT00940000156593.qc #30	ENSGT00390000005033.i.a	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b.a #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286.b.a.b	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.gb	ENSGT00530000063583.b	ENSGT00950000182962.b.b	ENSGT01060000248564.b.a.a.b	ENSGT00550000074943
Cyprininae	ANCESTRAL SPECIES	557									ENSGT00950000183050.b.b.b.a.b.a.d.c.a	ENSGT00940000156593.qc #30	ENSGT00390000005033.i.a	ENSGT00390000007479.i.a.a	ENSGT00940000154514	ENSGT00940000155369.A.d.b.a.a #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d.b	ENSGT00390000007686.b.c.a.d.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d.l	ENSGT00940000159694.b	ENSGT00940000157766.b.b.i	ENSGT00940000156528.d.b	ENSGT00940000158912.i.b	ENSGT00590000083139.d.b.gb
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2194															ENSCARG00000064346	mgat2 (ENSCARG00000064343) #22	WDR20 (ENSCARG00000064339)	hsp90aa1.2 (ENSCARG00000063669)	ppp2r5cb (ENSCARG00000060477)	DIO3 (ENSCARG00000060390)	slc25a29 (ENSCARG00000060365)	pak6b (ENSCARG00000060328)
Goldfish	MODERN SPECIES	56	slc35b2 (ENSCARG00000040802)	nfkbie (ENSCARG00000040793)	tmem151ba (ENSCARG00000040779)	rnf8 (ENSCARG00000040760)	ENSCARG00000040754 ##22	ENSCARG00000040747	ENSCARG00000040739	ENSCARG00000040722	disp1 (ENSCARG00000040703)	brox (ENSCARG00000040629)	aida (ENSCARG00000040469)	ENSCARG00000040452	ENSCARG00000040255	DUSP10 (ENSCARG00000040235)	hlx1 (ENSCARG00000040216)	mgat2 (ENSCARG00000040204) #22	WDR20 (ENSCARG00000040195)	ENSCARG00000040174	hsp90aa1.1 (ENSCARG00000039035)	ppp2r5cb (ENSCARG00000035541)	DIO3 (ENSCARG00000035449)	PLCB4 (ENSCARG00000057895)	ENSCARG00000057181
Goldfish	MODERN SPECIES	2539														MDGA2 (ENSCARG00000046455) #14	ENSCARG00000046432	mgat2 (ENSCARG00000046424) #22	WDR20 (ENSCARG00000046412)	hsp90aa1.2 (ENSCARG00000044690)	ppp2r5cb (ENSCARG00000043122)	DIO3 (ENSCARG00000043038)	slc25a47a (ENSCARG00000043014)	slc25a29 (ENSCARG00000042918)	pak6b (ENSCARG00000042891)	ENSCARG00000069143	ENSCARG00000069137	ENSCARG00000069111	ENSCARG00000069090	ENSCARG00000069083	znf410 (ENSCARG00000069074)	ENSCARG00000068916	ENSCARG00000068879
Cyprininae_a	ANCESTRAL SPECIES	142												ENSGT00390000007479.i.b	ENSGT00940000154514	ENSGT00940000155369.A.d.b.a.a #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a.d.b	ENSGT00390000007686.b.c.a.d.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d.l	ENSGT00940000159694.b	ENSGT00940000157766.b.b.i	ENSGT00940000156528.d.b	ENSGT00940000158912.i.b	ENSGT00590000083139.d.b.gb	ENSGT00390000002881	ENSGT00530000063583.b.k	ENSGT00950000182962.b.b.t.a.a	ENSGT01060000248564.b.a.a.b.f
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	586												faua (ENSSGRG00000001767)	FKBP3 (ENSSGRG00000001788)	MDGA2 (ENSSGRG00000001809) #14	ENSSGRG00000002000	mgat2 (ENSSGRG00000002015) #22	hsp90aa1.1 (ENSSGRG00000002069)	ENSSGRG00000005176	ENSSGRG00000005178	DIO3 (ENSSGRG00000005181)	DIO3 (ENSSGRG00000005183)	slc25a47a (ENSSGRG00000005188)	slc25a29 (ENSSGRG00000005192)	myh6 (ENSSGRG00000005194)	pak6b (ENSSGRG00000005197)	ENSSGRG00000005200	cdc40 (ENSSGRG00000005208)	WASF1 (ENSSGRG00000005683)	GPR6 (ENSSGRG00000005688)	FIG4 (ENSSGRG00000005693)	gata4 (ENSSGRG00000005704)
Golden-line barbel	MODERN SPECIES	947															ENSSGRG00000006974	mgat2 (ENSSGRG00000006979) #22	WDR20 (ENSSGRG00000006980)	hsp90aa1.1 (ENSSGRG00000006987)	ENSSGRG00000008192	ENSSGRG00000008194	ppp2r5cb (ENSSGRG00000008213)	ENSSGRG00000008343	ENSSGRG00000008344	slc25a29 (ENSSGRG00000008346)	ENSSGRG00000008348	pak6b (ENSSGRG00000008350)	ENSSGRG00000008353	ENSSGRG00000008363	METTL24 (ENSSGRG00000008395)	cdc40 (ENSSGRG00000008401)	WASF1 (ENSSGRG00000008403)
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	34	ENSCCRG00000033427	ENSCCRG00000033458	znf410 (ENSCCRG00000033444)	ENSCCRG00000066693	ENSCCRG00000078563	ENSCCRG00000062594	ENSCCRG00000030766	actr10 (ENSCCRG00000046034)	ENSCCRG00000065552	ENSCCRG00000067308	ENSCCRG00000066505 #30	ENSCCRG00000076204	ENSCCRG00000042341	ENSCCRG00000074623 #14	ENSCCRG00000076690	ENSCCRG00000062554 #22	WDR20 (ENSCCRG00000031985)	hsp90aa1.2 (ENSCCRG00000059456)	ppp2r5cb (ENSCCRG00000027540)	DIO3 (ENSCCRG00000027389)	slc25a47a (ENSCCRG00000035676)	slc25a29 (ENSCCRG00000011113)	pak6b (ENSCCRG00000026710)	ENSCCRG00000076315	METTL24 (ENSCCRG00000075264)	ENSCCRG00000080347	cdc40 (ENSCCRG00000019697)	ENSCCRG00000047170	WASF1 (ENSCCRG00000079243)	GPR6 (ENSCCRG00000060730)	ENSCCRG00000072281
Common carp reference	MODERN SPECIES	28	yy1b (ENSCCRG00000060622)	ENSCCRG00000033397	ENSCCRG00000065116	znf410 (ENSCCRG00000033429)	ENSCCRG00000052826	ENSCCRG00000058605	ENSCCRG00000019610	ENSCCRG00000019695	ENSCCRG00000060556	arf6a (ENSCCRG00000082547) #30	ENSCCRG00000039339	ENSCCRG00000058886	ENSCCRG00000077260	ENSCCRG00000078895 #14	ENSCCRG00000080905	mgat2 (ENSCCRG00000035595) #22	ENSCCRG00000007408	hsp90aa1.1 (ENSCCRG00000059174)	hsp90aa1.2 (ENSCCRG00000007442)	ppp2r5cb (ENSCCRG00000037761)	ENSCCRG00000080106	ENSCCRG00000070408	myh6 (ENSCCRG00000067645)	slc25a29 (ENSCCRG00000054460)	ENSCCRG00000027356	ENSCCRG00000064295	cdc40 (ENSCCRG00000001583)	WASF1 (ENSCCRG00000069905)	GPR6 (ENSCCRG00000062256)	FIG4 (ENSCCRG00000032517)	gata4 (ENSCCRG00000076261)
Zebrafish	MODERN SPECIES	12	ENSDARG00000078095	ENSDARG00000115359	zp2.5 (ENSDARG00000086522)	zp2.1 (ENSDARG00000086352)	zp2.6 (ENSDARG00000091409)	ENSDARG00000089966	zp2.3 (ENSDARG00000090237)	zp2.2 (ENSDARG00000105346)	actr10 (ENSDARG00000038432)	FKBP3 (ENSDARG00000098059)	prpf39 (ENSDARG00000100209)	faua (ENSDARG00000099022)	arf6a (ENSDARG00000101626) #30	ENSDARG00000003041	rps29 (ENSDARG00000041232) #18	mgat2 (ENSDARG00000052408) #22	WDR20 (ENSDARG00000041239)	si:dkey-241l7.2 (ENSDARG00000105335)	ENSDARG00000086956	si:dkey-241l7.4 (ENSDARG00000089478)	ENSDARG00000088989	ENSDARG00000041248	hsp90aa1.1 (ENSDARG00000010478)	hsp90aa1.2 (ENSDARG00000024746)	ppp2r5cb (ENSDARG00000031200)	slc25a47a (ENSDARG00000059923)	slc25a29 (ENSDARG00000057352)	myh6 (ENSDARG00000090637)	pak6b (ENSDARG00000052405)	ENSDARG00000078825	ENSDARG00000075016
Characiphysae	ANCESTRAL SPECIES	118	ENSGT00940000167216	ENSGT00630000089942	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00940000155014.xb.b	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593.pc.b #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877
Channel catfish	MODERN SPECIES	17	Ppp2r5a (ENSIPUG00000021816)	dtl (ENSIPUG00000021844)	ints7 (ENSIPUG00000021865)	lpgat1 (ENSIPUG00000021893)	nek2 (ENSIPUG00000021927)	Slc30a1 (ENSIPUG00000021968)	ENSIPUG00000021972	rd3 (ENSIPUG00000021975)	si:ch211-22i13.2 (ENSIPUG00000021979)	rhag (ENSIPUG00000021992)	ENSIPUG00000022016	saysd1 (ENSIPUG00000022029)	bpnt1 (ENSIPUG00000022034)	MDGA2 (ENSIPUG00000022087) #14	rps29 (ENSIPUG00000022139)	mgat2 (ENSIPUG00000022156) #22	ENSIPUG00000022161	ENSIPUG00000022166	ENSIPUG00000022175	hsp90aa1.1 (ENSIPUG00000022194)	hsp90a.1 (ENSIPUG00000022238)	ppp2r5cb (ENSIPUG00000022710)	DIO3 (ENSIPUG00000022732)	slc25a29 (ENSIPUG00000022736)	myh6 (ENSIPUG00000022744)	pak6b (ENSIPUG00000022810)	ENSIPUG00000022824	apobb.1 (ENSIPUG00000022832)	HPCAL1 (ENSIPUG00000022844)	pdia6 (ENSIPUG00000022856)	otofa (ENSIPUG00000022878)
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT00940000167216	ENSGT00630000089942	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00940000155014.xb.b	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593.pc.b #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877
Characoidei	ANCESTRAL SPECIES	130	ENSGT00940000167216	ENSGT00630000089942	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00940000155014.xb.b	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593.pc.b #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931
Red-bellied piranha	MODERN SPECIES	11	znf410 (ENSPNAG00000020014)	ENSPNAG00000020028	ENSPNAG00000020034	actr10 (ENSPNAG00000020113)	ENSPNAG00000003627	NAA30 (ENSPNAG00000020133)	ENSPNAG00000020147	otx2b (ENSPNAG00000020153)	ENSPNAG00000020163	ARF6 (ENSPNAG00000020250) #30	prpf39 (ENSPNAG00000005631)	faua (ENSPNAG00000020344)	FKBP3 (ENSPNAG00000020392)	MDGA2 (ENSPNAG00000020408) #14	ENSPNAG00000020504	mgat2 (ENSPNAG00000020516) #22	hsp90aa1.1 (ENSPNAG00000020599)	hsp90aa1.2 (ENSPNAG00000020617)	ppp2r5cb (ENSPNAG00000020720)	ENSPNAG00000020743	ENSPNAG00000020754	slc25a29 (ENSPNAG00000020765)	myh6 (ENSPNAG00000020778)	pak6b (ENSPNAG00000020809)	ENSPNAG00000020829	apobb.1 (ENSPNAG00000021212)	hpcal1 (ENSPNAG00000021252)	pdia6 (ENSPNAG00000021334)	otofa (ENSPNAG00000021496)	ENSPNAG00000021542	ENSPNAG00000021561
Mexicana tetra	MODERN SPECIES	18	niban1a (ENSAMXG00000009608)	TRMT1L (ENSAMXG00000009602)	cbr4 (ENSAMXG00000036711)	PALLD (ENSAMXG00000009581)	ENSAMXG00000037574	ENSAMXG00000036278	mep1ba (ENSAMXG00000009554)	mcm3l (ENSAMXG00000032018)	si:ch211-191a24.4 (ENSAMXG00000035418)	TNS3 (ENSAMXG00000009528)	igfbp3 (ENSAMXG00000036513)	igfbp1a (ENSAMXG00000009512)	ENSAMXG00000035428	ENSAMXG00000039635	ENSAMXG00000020569	mgat2 (ENSAMXG00000025291) #22	hsp90aa1.2 (ENSAMXG00000020572)	ppp2r5cb (ENSAMXG00000020584)	ENSAMXG00000025292	ENSAMXG00000029912	slc25a29 (ENSAMXG00000032847)	myh6 (ENSAMXG00000025295)	ENSAMXG00000029153	pak6b (ENSAMXG00000012204)	ENSAMXG00000012234	apobb.1 (ENSAMXG00000012267)	hpcal1 (ENSAMXG00000031838)	pdia6 (ENSAMXG00000034339)	otofa (ENSAMXG00000002401)	ENSAMXG00000037436	ENSAMXG00000002234
Electric eel	MODERN SPECIES	2	ENTPD5 (ENSEEEG00000012354)	znf410 (ENSEEEG00000012352)	ENSEEEG00000012350	zp2.6 (ENSEEEG00000012332)	actr10 (ENSEEEG00000012261)	ENSEEEG00000012259	ENSEEEG00000012257	ENSEEEG00000012256	ENSEEEG00000012245	ARF6 (ENSEEEG00000012241) #30	prpf39 (ENSEEEG00000012158)	faua (ENSEEEG00000012154)	FKBP3 (ENSEEEG00000012153)	MDGA2 (ENSEEEG00000012152) #14	ENSEEEG00000012151	mgat2 (ENSEEEG00000012150) #22	hsp90aa1.1 (ENSEEEG00000011928)	hsp90aa1.2 (ENSEEEG00000009747)	ppp2r5cb (ENSEEEG00000008732)	glra4a (ENSEEEG00000008686)	DIAPH2 (ENSEEEG00000008676)
Euteleosteomorpha	ANCESTRAL SPECIES	92	ENSGT00940000154763.d.b	ENSGT00940000167216	ENSGT00630000089942	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799
Acanthomorphata	ANCESTRAL SPECIES	35	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000180558	ENSGT00940000155369.A.d.b #14	ENSGT00940000154720 #18	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Cod	MODERN SPECIES	13	ENSGMOG00000011846	ENSGMOG00000011858	actr10 (ENSGMOG00000011860)	ENSGMOG00000025099	NAA30 (ENSGMOG00000030109)	ENSGMOG00000011885	ENSGMOG00000011886	ENSGMOG00000020564 #30	ENSGMOG00000011891	ENSGMOG00000011897	ENSGMOG00000011903	ENSGMOG00000031975	ENSGMOG00000004081	ENSGMOG00000018136 #14	ENSGMOG00000010799	ENSGMOG00000010807 #22	ctsbb (ENSGMOG00000010815)	ENSGMOG00000010822	gata4 (ENSGMOG00000010832)	ENSGMOG00000010842	ENSGMOG00000010867	ENSGMOG00000010873	ENSGMOG00000010891	ENSGMOG00000010917	ENSGMOG00000010926	ENSGMOG00000010945	ENSGMOG00000010957	ENSGMOG00000010975	eif2b2 (ENSGMOG00000011032)	tmed10 (ENSGMOG00000011041)	fosab (ENSGMOG00000032190)
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000180558	ENSGT00940000155369.A.d.b #14	ENSGT00940000154720 #18	ENSGT00940000161051.a.b	ENSGT00940000163716.d	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Pinecone sodierfish	MODERN SPECIES	16	znf410 (ENSMMDG00005019348)	ENSMMDG00005019349	ENSMMDG00005019351	actr10 (ENSMMDG00005019354)	naa30 (ENSMMDG00005019379)	ENSMMDG00005019380	ENSMMDG00005019388	arf6a (ENSMMDG00005019580) #30	prpf39 (ENSMMDG00005019582)	faua (ENSMMDG00005019597)	FKBP3 (ENSMMDG00005019598)	ENSMMDG00005002582	MDGA2 (ENSMMDG00005002608) #14	ENSMMDG00005002773	ENSMMDG00005004432	mgat2 (ENSMMDG00005004437) #22	WDR20 (ENSMMDG00005004451)	hsp90aa1.1 (ENSMMDG00005004481)	hsp90aa1.2 (ENSMMDG00005004576)	ppp2r5cb (ENSMMDG00005006690)	ENSMMDG00005011627	ENSMMDG00005011628	slc25a47a (ENSMMDG00005011630)	slc25a29 (ENSMMDG00005011633)	ENSMMDG00005011636	vrtn (ENSMMDG00005011638)	syndig1l (ENSMMDG00005011639)	dll4 (ENSMMDG00005011644)	chac1 (ENSMMDG00005011661)	ino80 (ENSMMDG00005011688)	vps18 (ENSMMDG00005012785)
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000180558	ENSGT00940000155369.A.d.b #14	ENSGT00940000154720 #18	ENSGT00940000161051.a.b	ENSGT01050000244841.A.a.b.qb.a.b	ENSGT00940000163716.d.b	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000163716.d.b	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000163716.d.b	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000163716.d.b	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593 #30	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c
Tetraodon	MODERN SPECIES	5	znf410 (ENSTNIG00000010743)	CIPC (ENSTNIG00000010744)	ENSTNIG00000010745	actr10 (ENSTNIG00000002450)	ENSTNIG00000002449	naa30 (ENSTNIG00000002448)	ENSTNIG00000010984	ENSTNIG00000010983	arf6a (ENSTNIG00000019582) #30	prpf39 (ENSTNIG00000010982)	faua (ENSTNIG00000010981)	FKBP3 (ENSTNIG00000010980)	MDGA2 (ENSTNIG00000010979) #14	ENSTNIG00000010978	ENSTNIG00000010977	mgat2 (ENSTNIG00000002467) #22	WDR20 (ENSTNIG00000010976)	hsp90aa1.1 (ENSTNIG00000010975)	ppp2r5cb (ENSTNIG00000010974)	DIO3 (ENSTNIG00000010973)	slc25a47a (ENSTNIG00000010972)	slc25a29 (ENSTNIG00000010971)	vrtn (ENSTNIG00000010970)	dll4 (ENSTNIG00000010969)	chac1 (ENSTNIG00000010968)	ino80 (ENSTNIG00000010967)	vps18 (ENSTNIG00000010966)	rhov (ENSTNIG00000010965)	pigh (ENSTNIG00000010964)	ZFYVE1 (ENSTNIG00000010963)	wdr21 (ENSTNIG00000010962)
Fugu	MODERN SPECIES	7	znf410 (ENSTRUG00000024064)	ENSTRUG00000028764	ENSTRUG00000011294	actr10 (ENSTRUG00000011341)	ENSTRUG00000028646	naa30 (ENSTRUG00000026914)	ENSTRUG00000031225	ENSTRUG00000033296	ENSTRUG00000020509	prpf39 (ENSTRUG00000011730)	faua (ENSTRUG00000011861)	FKBP3 (ENSTRUG00000011887)	MDGA2 (ENSTRUG00000011984) #14	fglce (ENSTRUG00000012141)	ENSTRUG00000012333	mgat2 (ENSTRUG00000012335) #22	ENSTRUG00000032545	WDR20 (ENSTRUG00000012360)	hsp90aa1.1 (ENSTRUG00000012406)	ppp2r5cb (ENSTRUG00000012577)	DIO3 (ENSTRUG00000025181)	slc25a29 (ENSTRUG00000012880)	slc25a47a (ENSTRUG00000022202)	vrtn (ENSTRUG00000012918)	syndig1l (ENSTRUG00000012920)	ENSTRUG00000023212	dll4 (ENSTRUG00000012962)	chac1 (ENSTRUG00000028078)	ino80 (ENSTRUG00000013026)	vps18 (ENSTRUG00000013062)	rhov (ENSTRUG00000028063)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000163716.d.b	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Ballan wrasse	MODERN SPECIES	47	ENSLBEG00000025050	znf410 (ENSLBEG00000025026)	ENSLBEG00000025005	actr10 (ENSLBEG00000024972)	ENSLBEG00000024949	naa30 (ENSLBEG00000024928)	ENSLBEG00000024908	ENSLBEG00000024851	arf6a (ENSLBEG00000024782) #30	prpf39 (ENSLBEG00000024729)	faua (ENSLBEG00000024699)	FKBP3 (ENSLBEG00000024662)	MDGA2 (ENSLBEG00000024607) #14	ENSLBEG00000024539	ENSLBEG00000024520	mgat2 (ENSLBEG00000024499) #22	dpf3 (ENSLBEG00000024467)	wdr21 (ENSLBEG00000024448)	ZFYVE1 (ENSLBEG00000024415)	pigh (ENSLBEG00000024395)	rhov (ENSLBEG00000024375)	vps18 (ENSLBEG00000024345)	ino80 (ENSLBEG00000024288)	chac1 (ENSLBEG00000024267)	dll4 (ENSLBEG00000024247)	syndig1l (ENSLBEG00000024230)	vrtn (ENSLBEG00000024210)	slc25a29 (ENSLBEG00000024191)	slc25a47a (ENSLBEG00000024175)	DIO3 (ENSLBEG00000024157)	ppp2r5cb (ENSLBEG00000024111)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000163716.d.b	ENSGT00940000154720 #18	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c
European seabass	MODERN SPECIES	7	znf410 (ENSDLAG00005000471)	ENSDLAG00005000473	ENSDLAG00005000474	actr10 (ENSDLAG00005000481)	ENSDLAG00005000510	NAA30 (ENSDLAG00005033880)	ENSDLAG00005029610	ENSDLAG00005029106	ENSDLAG00005035032 #30	ENSDLAG00005000566	ENSDLAG00005000664	ENSDLAG00005028563	ENSDLAG00005000731 #14	ENSDLAG00005000992	rps29 (ENSDLAG00005000997) #18	mgat2 (ENSDLAG00005026871) #22	ENSDLAG00005001004	hsp90aa1.2 (ENSDLAG00005001074)	ENSDLAG00005001479	slc25a47a (ENSDLAG00005001485)	slc25a29 (ENSDLAG00005032910)	vrtn (ENSDLAG00005001503)	syndig1l (ENSDLAG00005001511)	ENSDLAG00005032835	dll4 (ENSDLAG00005001518)	chac1 (ENSDLAG00005029732)	ino80 (ENSDLAG00005001610)	rhov (ENSDLAG00005030420)	pigh (ENSDLAG00005033224)	ENSDLAG00005002028	wdr21 (ENSDLAG00005002084)
Large yellow croaker	MODERN SPECIES	482	ENTPD5 (ENSLCRG00005004000)	znf410 (ENSLCRG00005003999)	ENSLCRG00005003997	ENSLCRG00005003996	actr10 (ENSLCRG00005003830)	ENSLCRG00005003828	naa30 (ENSLCRG00005003826)	ENSLCRG00005003824	ENSLCRG00005003823	arf6a (ENSLCRG00005003821) #30	prpf39 (ENSLCRG00005003628)	faua (ENSLCRG00005003623)	FKBP3 (ENSLCRG00005003622)	MDGA2 (ENSLCRG00005001963) #14	ENSLCRG00005001914	mgat2 (ENSLCRG00005001894) #22	WDR20 (ENSLCRG00005001872)	hsp90aa1.2 (ENSLCRG00005000648)	ppp2r5cb (ENSLCRG00005022143)	ENSLCRG00005021525	ENSLCRG00005021518	slc25a47a (ENSLCRG00005021513)	slc25a29 (ENSLCRG00005021501)	vrtn (ENSLCRG00005021476)	syndig1l (ENSLCRG00005021467)	ENSLCRG00005021463	dll4 (ENSLCRG00005021458)	chac1 (ENSLCRG00005021442)	ino80 (ENSLCRG00005021319)	vps18 (ENSLCRG00005021260)	rhov (ENSLCRG00005021251)
Gilthead seabream	MODERN SPECIES	14	znf410 (ENSSAUG00010026092)	ENSSAUG00010026091	ENSSAUG00010026090	actr10 (ENSSAUG00010026050)	ENSSAUG00010026042	naa30 (ENSSAUG00010026041)	ENSSAUG00010026040	ENSSAUG00010026038	arf6a (ENSSAUG00010026037) #30	prpf39 (ENSSAUG00010026033)	faua (ENSSAUG00010026031)	FKBP3 (ENSSAUG00010026030)	ENSSAUG00010026029	MDGA2 (ENSSAUG00010025823) #14	ENSSAUG00010025807	mgat2 (ENSSAUG00010025805) #22	WDR20 (ENSSAUG00010025803)	hsp90aa1.2 (ENSSAUG00010025665)	ppp2r5cb (ENSSAUG00010024693)	dio3 (ENSSAUG00010024659)	slc25a47a (ENSSAUG00010024655)	slc25a29 (ENSSAUG00010024653)	vrtn (ENSSAUG00010024651)	syndig1l (ENSSAUG00010024647)	ENSSAUG00010024644	dll4 (ENSSAUG00010024641)	chac1 (ENSSAUG00010024636)	ino80 (ENSSAUG00010024536)	vps18 (ENSSAUG00010024532)	rhov (ENSSAUG00010024531)	pigh (ENSSAUG00010024530)
Perciformes	ANCESTRAL SPECIES	14	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00940000167216	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Lumpfish	MODERN SPECIES	16	ENSCLMG00005017385	ENSCLMG00005017388	ENSCLMG00005017390	actr10 (ENSCLMG00005017395)	naa30 (ENSCLMG00005017401)	ENSCLMG00005017404	ENSCLMG00005017405	arf6a (ENSCLMG00005017408) #30	prpf39 (ENSCLMG00005017412)	faua (ENSCLMG00005017685)	FKBP3 (ENSCLMG00005017686)	MDGA2 (ENSCLMG00005017689) #14	ENSCLMG00005017693	ENSCLMG00005017867	rps29 (ENSCLMG00005017868) #18	mgat2 (ENSCLMG00005017870) #22	WDR20 (ENSCLMG00005017871)	hsp90aa1.1 (ENSCLMG00005017874)	ppp2r5cb (ENSCLMG00005018387)	slc25a47a (ENSCLMG00005020560)	slc25a29 (ENSCLMG00005020564)	vrtn (ENSCLMG00005020566)	syndig1l (ENSCLMG00005020567)	dll4 (ENSCLMG00005020568)	chac1 (ENSCLMG00005020570)	ino80 (ENSCLMG00005020571)	vps18 (ENSCLMG00005020633)	rhov (ENSCLMG00005020634)	pigh (ENSCLMG00005020635)	ZFYVE1 (ENSCLMG00005020640)	wdr21 (ENSCLMG00005020644)
Stickleback	MODERN SPECIES	18	znf410 (ENSGACG00000012666)	ENSGACG00000012672	actr10 (ENSGACG00000012675)	ENSGACG00000012726	ENSGACG00000012728	naa30 (ENSGACG00000012738)	otx2b (ENSGACG00000012744)	ENSGACG00000012749	arf6a (ENSGACG00000012762) #30	prpf39 (ENSGACG00000012765)	faua (ENSGACG00000012791)	FKBP3 (ENSGACG00000012834)	MDGA2 (ENSGACG00000012846) #14	ENSGACG00000012854	rps29 (ENSGACG00000012858) #18	mgat2 (ENSGACG00000012866) #22	WDR20 (ENSGACG00000012871)	hsp90aa1.1 (ENSGACG00000012875)	hsp90aa1.2 (ENSGACG00000012888)	ppp2r5cb (ENSGACG00000012912)	DIO3 (ENSGACG00000012922)	slc25a47a (ENSGACG00000012923)	slc25a29 (ENSGACG00000012925)	vrtn (ENSGACG00000012930)	syndig1l (ENSGACG00000012931)	dll4 (ENSGACG00000012933)	chac1 (ENSGACG00000012938)	ino80 (ENSGACG00000012960)	vps18 (ENSGACG00000012969)	rhov (ENSGACG00000012976)	pigh (ENSGACG00000012982)
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Pike perch	MODERN SPECIES	4													MDGA2 (ENSSLUG00000001443) #14	ENSSLUG00000001436	ENSSLUG00000001434	mgat2 (ENSSLUG00000001433) #22	WDR20 (ENSSLUG00000001424)	hsp90aa1.1 (ENSSLUG00000001246)	ppp2r5cb (ENSSLUG00000001140)	ENSSLUG00000001104	ENSSLUG00000001098	slc25a47a (ENSSLUG00000001097)	slc25a29 (ENSSLUG00000001093)	vrtn (ENSSLUG00000001090)	syndig1l (ENSSLUG00000001089)	dll4 (ENSSLUG00000001083)	chac1 (ENSSLUG00000001082)	ino80 (ENSSLUG00000000872)	vps18 (ENSSLUG00000000812)	rhov (ENSSLUG00000000811)	pigh (ENSSLUG00000000807)
Channel bull blenny	MODERN SPECIES	16	ENTPD5 (ENSCGOG00000023962)	znf410 (ENSCGOG00000023961)	ENSCGOG00000023960	ENSCGOG00000023959	actr10 (ENSCGOG00000023938)	ENSCGOG00000023929	naa30 (ENSCGOG00000023928)	ENSCGOG00000023926	ENSCGOG00000023924	arf6a (ENSCGOG00000023923) #30	prpf39 (ENSCGOG00000023883)	FKBP3 (ENSCGOG00000023871)	faua (ENSCGOG00000023872)	MDGA2 (ENSCGOG00000023869) #14	ENSCGOG00000023807	mgat2 (ENSCGOG00000023791) #22	ENSCGOG00000023788	WDR20 (ENSCGOG00000023778)	hsp90aa1.2 (ENSCGOG00000022466)	ppp2r5cb (ENSCGOG00000020075)	ENSCGOG00000019968	ENSCGOG00000019966	slc25a47a (ENSCGOG00000019964)	slc25a29 (ENSCGOG00000019961)	vrtn (ENSCGOG00000019956)	ENSCGOG00000019938	ENSCGOG00000019936	dll4 (ENSCGOG00000019932)	chac1 (ENSCGOG00000019930)	ino80 (ENSCGOG00000019872)	vps18 (ENSCGOG00000019819)
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00940000163716.d.b	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Anabantaria	ANCESTRAL SPECIES	20	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000157284.bb	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154720 #18	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00630000089942	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000157284.bb	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Climbing perch	MODERN SPECIES	15	ENTPD5 (ENSATEG00000000052)	znf410 (ENSATEG00000000076)	ENSATEG00000000083	ENSATEG00000000124	actr10 (ENSATEG00000000173)	ENSATEG00000025449	NAA30 (ENSATEG00000028641)	ENSATEG00000027190	ENSATEG00000025664	ENSATEG00000000391 #30	ENSATEG00000000566	ENSATEG00000028276	ENSATEG00000000623	ENSATEG00000000691 #14	ENSATEG00000000779	mgat2 (ENSATEG00000000793) #22	ENSATEG00000000815	hsp90aa1.2 (ENSATEG00000000852)	ppp2r5cb (ENSATEG00000000917)	ENSATEG00000028590	ENSATEG00000000986	slc25a47a (ENSATEG00000001008)	slc25a29 (ENSATEG00000028242)	vrtn (ENSATEG00000001075)	syndig1l (ENSATEG00000001102)	dll4 (ENSATEG00000001136)	chac1 (ENSATEG00000027569)	ino80 (ENSATEG00000001271)	vps18 (ENSATEG00000001283)	rhov (ENSATEG00000027093)	pigh (ENSATEG00000001342)
Siamese fighting fish	MODERN SPECIES	13	ALDH6A1 (ENSBSLG00000016934)	ENTPD5 (ENSBSLG00000017555)	znf410 (ENSBSLG00000017703)	ENSBSLG00000017724	ENSBSLG00000017741	actr10 (ENSBSLG00000017782)	naa30 (ENSBSLG00000018166)	ENSBSLG00000018205	ENSBSLG00000018226	arf6a (ENSBSLG00000018243) #30	prpf39 (ENSBSLG00000018272)	faua (ENSBSLG00000018612)	FKBP3 (ENSBSLG00000018759)	MDGA2 (ENSBSLG00000018872) #14	rps29 (ENSBSLG00000019361) #18	mgat2 (ENSBSLG00000019364) #22	WDR20 (ENSBSLG00000019429)	hsp90aa1.1 (ENSBSLG00000019526)	ppp2r5cb (ENSBSLG00000019671)	ENSBSLG00000020101	slc25a47a (ENSBSLG00000020951)	slc25a29 (ENSBSLG00000020968)	vrtn (ENSBSLG00000020992)	syndig1l (ENSBSLG00000021051)	dll4 (ENSBSLG00000021079)	chac1 (ENSBSLG00000021103)	ino80 (ENSBSLG00000021240)	vps18 (ENSBSLG00000021710)	rhov (ENSBSLG00000021779)	pigh (ENSBSLG00000021785)	ZFYVE1 (ENSBSLG00000021813)
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000012791	ENSMAMG00000012808	ENSMAMG00000012835	znf410 (ENSMAMG00000012859)	ENSMAMG00000028418	actr10 (ENSMAMG00000012990)	ENSMAMG00000013049	ENSMAMG00000013063	ENSMAMG00000013120	ENSMAMG00000013298	faua (ENSMAMG00000013349)	ENSMAMG00000013363	ENSMAMG00000013385 #14	ENSMAMG00000013422	RPS29 (ENSMAMG00000027072)	mgat2 (ENSMAMG00000013450) #22	ENSMAMG00000013465	hsp90aa1.1 (ENSMAMG00000013506)	ppp2r5cb (ENSMAMG00000013586)	ENSMAMG00000026188	ENSMAMG00000028602	slc25a29 (ENSMAMG00000013649)	vrtn (ENSMAMG00000013669)	syndig1l (ENSMAMG00000013681)	dll4 (ENSMAMG00000013709)	chac1 (ENSMAMG00000013751)	ino80 (ENSMAMG00000013786)	vps18 (ENSMAMG00000013843)	rhov (ENSMAMG00000013865)	pigh (ENSMAMG00000027843)	ENSMAMG00000013902
Carangaria	ANCESTRAL SPECIES	18	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00940000163716.d.b	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479.b	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c
Seriola	ANCESTRAL SPECIES	4	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000157284.bb	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00940000154514	ENSGT00390000007479.b	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000009099	ENSSDUG00000009124	actr10 (ENSSDUG00000009145)	ENSSDUG00000009196	naa30 (ENSSDUG00000009208)	ENSSDUG00000009215	ENSSDUG00000009220	ENSSDUG00000009246	arf6a (ENSSDUG00000009325) #30	prpf39 (ENSSDUG00000009408)	FKBP3 (ENSSDUG00000009455)	faua (ENSSDUG00000009474)	MDGA2 (ENSSDUG00000009486) #14	ENSSDUG00000009521	rps29 (ENSSDUG00000009578) #18	mgat2 (ENSSDUG00000009589) #22	WDR20 (ENSSDUG00000009597)	ENSSDUG00000009627	ENSSDUG00000009638	hsp90aa1.1 (ENSSDUG00000009654)	hsp90aa1.2 (ENSSDUG00000009687)	ppp2r5cb (ENSSDUG00000009757)	ENSSDUG00000009861	ENSSDUG00000009868	slc25a47a (ENSSDUG00000009885)	slc25a29 (ENSSDUG00000009892)	vrtn (ENSSDUG00000009896)	syndig1l (ENSSDUG00000009907)	dll4 (ENSSDUG00000009921)	chac1 (ENSSDUG00000009941)	ino80 (ENSSDUG00000009957)
Yellowtail amberjack	MODERN SPECIES	3189	znf410 (ENSSLDG00000001446)	ENSSLDG00000001427	ENSSLDG00000001412	actr10 (ENSSLDG00000001351)	ENSSLDG00000001332	naa30 (ENSSLDG00000001316)	ENSSLDG00000001313	ENSSLDG00000001307	arf6a (ENSSLDG00000001161) #30	prpf39 (ENSSLDG00000001103)	FKBP3 (ENSSLDG00000001058)	faua (ENSSLDG00000001079)	MDGA2 (ENSSLDG00000000988) #14	ENSSLDG00000000868	rps29 (ENSSLDG00000000846) #18	mgat2 (ENSSLDG00000000829) #22	WDR20 (ENSSLDG00000000786)	hsp90aa1.2 (ENSSLDG00000000719)	ppp2r5cb (ENSSLDG00000000640)	ENSSLDG00000000620	ENSSLDG00000000599	slc25a47a (ENSSLDG00000000590)	slc25a29 (ENSSLDG00000000581)	vrtn (ENSSLDG00000000562)	dll4 (ENSSLDG00000000548)	chac1 (ENSSLDG00000000542)	ino80 (ENSSLDG00000000389)	vps18 (ENSSLDG00000000311)	rhov (ENSSLDG00000000304)	pigh (ENSSLDG00000000277)	ZFYVE1 (ENSSLDG00000000199)
Barramundi perch	MODERN SPECIES	116													ENSLCAG00010021160	MDGA2 (ENSLCAG00010020977) #14	ENSLCAG00010020914	mgat2 (ENSLCAG00010020908) #22	WDR20 (ENSLCAG00010020900)	hsp90aa1.2 (ENSLCAG00010020001)	ENSLCAG00010019808	ENSLCAG00010019807	slc25a47a (ENSLCAG00010019805)	slc25a29 (ENSLCAG00010019802)	vrtn (ENSLCAG00010019801)	syndig1l (ENSLCAG00010019800)	dll4 (ENSLCAG00010019795)	chac1 (ENSLCAG00010019792)	ino80 (ENSLCAG00010019682)	vps18 (ENSLCAG00010019641)	rhov (ENSLCAG00010019637)	pigh (ENSLCAG00010019632)	ZFYVE1 (ENSLCAG00010019594)
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b.f	ENSGT00940000154720 #18	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Turbot	MODERN SPECIES	12	ENSSMAG00000006635	znf410 (ENSSMAG00000006657)	ENSSMAG00000006673	ENSSMAG00000006677	actr10 (ENSSMAG00000006699)	ENSSMAG00000006770	ENSSMAG00000006782	ENSSMAG00000029880	ENSSMAG00000022427 #30	ENSSMAG00000006818	ENSSMAG00000006853	ENSSMAG00000006828	ENSSMAG00000006865 #14	ENSSMAG00000006890	ENSSMAG00000006893	mgat2 (ENSSMAG00000006919) #22	ENSSMAG00000006928	hsp90aa1.1 (ENSSMAG00000006949)	hsp90aa1.2 (ENSSMAG00000006974)	ppp2r5cb (ENSSMAG00000007001)	slc25a47a (ENSSMAG00000007099)	slc25a29 (ENSSMAG00000007118)	vrtn (ENSSMAG00000007125)	syndig1l (ENSSMAG00000007145)	dll4 (ENSSMAG00000007170)	chac1 (ENSSMAG00000025069)	ino80 (ENSSMAG00000007221)	vps18 (ENSSMAG00000007531)	rhov (ENSSMAG00000033210)	pigh (ENSSMAG00000007557)	ENSSMAG00000007567
Tongue sole	MODERN SPECIES	17	ENSCSEG00000002007	ENSCSEG00000001999	ENSCSEG00000001996	ENSCSEG00000001978	ENSCSEG00000001966	pak5 (ENSCSEG00000001945)	ENSCSEG00000001933	arf6a (ENSCSEG00000001921) #30	prpf39 (ENSCSEG00000001909)	faua (ENSCSEG00000001903)	FKBP3 (ENSCSEG00000001893)	papola (ENSCSEG00000001841)	ENSCSEG00000001833	MDGA2 (ENSCSEG00000001820) #14	rps29 (ENSCSEG00000001818) #18	mgat2 (ENSCSEG00000001816) #22	WDR20 (ENSCSEG00000001812)	hsp90aa1.1 (ENSCSEG00000000594)	hsp90aa1.2 (ENSCSEG00000000515)	ppp2r5cb (ENSCSEG00000000502)	DIO3 (ENSCSEG00000000497)	slc25a47a (ENSCSEG00000000494)	slc25a29 (ENSCSEG00000000487)	vrtn (ENSCSEG00000000482)	ENSCSEG00000000478	dll4 (ENSCSEG00000000474)	chac1 (ENSCSEG00000000472)	ENSCSEG00000000466	otofa (ENSCSEG00000000441)	ENSCSEG00000000434	sod2 (ENSCSEG00000000427)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000157284.bb	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Aplocheiloidei	ANCESTRAL SPECIES	34	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Mangrove rivulus	MODERN SPECIES	12	ENTPD5 (ENSKMAG00000000340)	znf410 (ENSKMAG00000000324)	ENSKMAG00000000315	ENSKMAG00000000307	actr10 (ENSKMAG00000000203)	naa30 (ENSKMAG00000000192)	ENSKMAG00000000166	ENSKMAG00000019875	arf6a (ENSKMAG00000019856) #30	prpf39 (ENSKMAG00000019826)	FKBP3 (ENSKMAG00000019790)	faua (ENSKMAG00000019812)	MDGA2 (ENSKMAG00000019750) #14	ENSKMAG00000019707	ENSKMAG00000019695	mgat2 (ENSKMAG00000019684) #22	WDR20 (ENSKMAG00000019666)	hsp90aa1.1 (ENSKMAG00000019638)	hsp90aa1.2 (ENSKMAG00000019493)	ppp2r5cb (ENSKMAG00000019432)	ENSKMAG00000019413	ENSKMAG00000019407	slc25a47a (ENSKMAG00000019396)	slc25a29 (ENSKMAG00000019387)	vrtn (ENSKMAG00000019372)	syndig1l (ENSKMAG00000019363)	dll4 (ENSKMAG00000019346)	chac1 (ENSKMAG00000019339)	ino80 (ENSKMAG00000019273)	vps18 (ENSKMAG00000019239)	rhov (ENSKMAG00000019225)
Turquoise killifish	MODERN SPECIES	1613	KIAA1737 (ENSNFUG00015010496)	ENSNFUG00015010502	ACTR10 (ENSNFUG00015010515)	C14ORF37 (ENSNFUG00015010548)	naa30 (ENSNFUG00015010552)	Nfu_g_1_012360 (ENSNFUG00015010559)	prpf39 (ENSNFUG00015010590)	CABZ01111496.1 (ENSNFUG00015010838)	arf6a (ENSNFUG00015010852) #30	FAUA (ENSNFUG00015010861)	FKBP3 (ENSNFUG00015010869)	MDGA2 (ENSNFUG00015010896) #14	ENSNFUG00015011010	ENSNFUG00015011018	ENSNFUG00015011032	MGAT2 (ENSNFUG00015011041) #22	ENSNFUG00015011060	WDR20 (ENSNFUG00015011077)	hsp90aa1.1 (ENSNFUG00015011193)	HSP90AA1.2 (ENSNFUG00015011529)	ppp2r5cb (ENSNFUG00015011890)	ENSNFUG00015012108	DIO3 (ENSNFUG00015012111)	slc25a47a (ENSNFUG00015012119)	SLC25A29 (ENSNFUG00015012133)	vrtn (ENSNFUG00015012141)	syndig1l (ENSNFUG00015012145)	myo6a (ENSNFUG00015012160)	ENSNFUG00015012189	ENSNFUG00015012197	ENSNFUG00015012206
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000156110.c.b	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Poecilia	ANCESTRAL SPECIES	9	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT01030000235595	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b.c	ENSGT00940000157766.b.b.d	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
NAME_6	ANCESTRAL SPECIES	348															ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b.c	ENSGT00940000157766.b.b.d	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b
Amazon molly	MODERN SPECIES	684															ENSPFOG00000015337	mgat2 (ENSPFOG00000020835) #22	WDR20 (ENSPFOG00000015299)	hsp90aa1.1 (ENSPFOG00000015241)	hsp90aa1.2 (ENSPFOG00000015166)	ppp2r5cb (ENSPFOG00000015162)	DIO3 (ENSPFOG00000015160)	slc25a47a (ENSPFOG00000015116)	slc25a29 (ENSPFOG00000021854)	slc25a29 (ENSPFOG00000015090)	vrtn (ENSPFOG00000015078)	ENSPFOG00000022492	syndig1l (ENSPFOG00000015059)
Sailfin molly	MODERN SPECIES	739															ENSPLAG00000012091	mgat2 (ENSPLAG00000012099) #22	WDR20 (ENSPLAG00000012131)	hsp90aa1.1 (ENSPLAG00000012170)	hsp90aa1.2 (ENSPLAG00000012186)	ppp2r5cb (ENSPLAG00000012260)	ENSPLAG00000012274	ENSPLAG00000012283	slc25a47a (ENSPLAG00000012288)	slc25a29 (ENSPLAG00000012307)	slc25a29 (ENSPLAG00000012333)	vrtn (ENSPLAG00000012346)
Guppy	MODERN SPECIES	452	znf410 (ENSPREG00000015555)	ENSPREG00000015535	ENSPREG00000015525	actr10 (ENSPREG00000015477)	naa30 (ENSPREG00000015464)	ENSPREG00000015331	ENSPREG00000015246	ENSPREG00000015159	prpf39 (ENSPREG00000015124)	faua (ENSPREG00000015112)	FKBP3 (ENSPREG00000015096)	ENSPREG00000015083	MDGA2 (ENSPREG00000015059) #14	ENSPREG00000014353	ENSPREG00000014241	mgat2 (ENSPREG00000014232) #22	WDR20 (ENSPREG00000014198)	hsp90aa1.2 (ENSPREG00000014180)	hsp90aa1.1 (ENSPREG00000014113)	ppp2r5cb (ENSPREG00000014007)	ENSPREG00000013921	ENSPREG00000013919	slc25a47a (ENSPREG00000013911)	slc25a29 (ENSPREG00000013879)	slc25a29 (ENSPREG00000013863)	vrtn (ENSPREG00000013841)	syndig1l (ENSPREG00000013825)	dll4 (ENSPREG00000013755)	chac1 (ENSPREG00000013709)	ino80 (ENSPREG00000013650)	vps18 (ENSPREG00000013610)
Platyfish	MODERN SPECIES	6	ENSXMAG00000008417	znf410 (ENSXMAG00000008410)	ENSXMAG00000025371	ENSXMAG00000008405	actr10 (ENSXMAG00000008391)	ENSXMAG00000008388	naa30 (ENSXMAG00000027136)	ENSXMAG00000008382	ENSXMAG00000008377	ENSXMAG00000028437	prpf39 (ENSXMAG00000008360)	FKBP3 (ENSXMAG00000008349)	faua (ENSXMAG00000027754)	MDGA2 (ENSXMAG00000008327) #14	ENSXMAG00000008326	mgat2 (ENSXMAG00000019477) #22	WDR20 (ENSXMAG00000008321)	hsp90aa1.1 (ENSXMAG00000008315)	hsp90aa1.2 (ENSXMAG00000008303)	ppp2r5cb (ENSXMAG00000027983)	ENSXMAG00000020366	ENSXMAG00000022509	slc25a47a (ENSXMAG00000013521)	slc25a29 (ENSXMAG00000024452)	slc25a29 (ENSXMAG00000029747)	vrtn (ENSXMAG00000013515)	syndig1l (ENSXMAG00000013513)	dll4 (ENSXMAG00000004195)	chac1 (ENSXMAG00000004258)	ino80 (ENSXMAG00000006742)	vps18 (ENSXMAG00000006768)
NAME_4	ANCESTRAL SPECIES	57															ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110.g	ENSGT00900000141110.h	ENSGT00940000153635.B	ENSGT00940000157624.a
Mummichog	MODERN SPECIES	638															ENSFHEG00000018419	mgat2 (ENSFHEG00000018405) #22	WDR20 (ENSFHEG00000018393)	hsp90aa1.2 (ENSFHEG00000018363)	ppp2r5cb (ENSFHEG00000018331)	DIO3 (ENSFHEG00000018229)
Sheepshead minnow	MODERN SPECIES	1062															ENSCVAG00000004609	mgat2 (ENSCVAG00000004616) #22	WDR20 (ENSCVAG00000004643)	hsp90aa1.1 (ENSCVAG00000004674)	hsp90aa1.2 (ENSCVAG00000004683)	ppp2r5cb (ENSCVAG00000004800)	ENSCVAG00000004809	ENSCVAG00000004817	slc25a47a (ENSCVAG00000004822)	slc25a29 (ENSCVAG00000004838)	vrtn (ENSCVAG00000004849)	ENSCVAG00000004855
Oryzias	ANCESTRAL SPECIES	19	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00530000063085.A.a	ENSGT00940000155656	ENSGT00940000154790.a.a.b	ENSGT00940000166832	ENSGT00940000156874	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183	ENSGT00390000004028
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00530000063085.A.a	ENSGT00940000155656	ENSGT00940000154790.a.a.b	ENSGT00940000166832	ENSGT00940000156874	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT01030000234809	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183
Indian medaka	MODERN SPECIES	22	slc16a10 (ENSOMEG00000011479)	mfsd4b (ENSOMEG00000011465)	REV3L (ENSOMEG00000011441)	ENSOMEG00000011323	ENSOMEG00000011289	ENSOMEG00000011277	naa30 (ENSOMEG00000011245)	ENSOMEG00000011222	arf6a (ENSOMEG00000011194) #30	prpf39 (ENSOMEG00000011139)	faua (ENSOMEG00000011071)	FKBP3 (ENSOMEG00000011034)	MDGA2 (ENSOMEG00000010974) #14	ENSOMEG00000010871	rps29 (ENSOMEG00000010831) #18	mgat2 (ENSOMEG00000010820) #22	ENSOMEG00000010808	rps6kc1 (ENSOMEG00000010758)	prox1a (ENSOMEG00000010697)	smyd2b (ENSOMEG00000010678)	ENSOMEG00000010615	ENSOMEG00000010608	ENSOMEG00000010599	ENSOMEG00000010586	cep57l1 (ENSOMEG00000010571)	ENSOMEG00000010548	ppil6 (ENSOMEG00000000253)	ENSOMEG00000010515	si:ch211-51e12.7 (ENSOMEG00000010489)	mrps10 (ENSOMEG00000010468)	tulp4a (ENSOMEG00000010431)
Javanese ricefish	MODERN SPECIES	16	CDK19 (ENSOJAG00000023507)	amd1 (ENSOJAG00000023497)	rpf2 (ENSOJAG00000023492)	slc16a10 (ENSOJAG00000023490)	mfsd4b (ENSOJAG00000023487)	ENSOJAG00000023477	naa30 (ENSOJAG00000023473)	ENSOJAG00000023471	ENSOJAG00000023467	prpf39 (ENSOJAG00000023428)	faua (ENSOJAG00000023420)	FKBP3 (ENSOJAG00000023416)	OjLCE (ENSOJAG00000023413)	MDGA2 (ENSOJAG00000023345) #14	rps29 (ENSOJAG00000023319) #18	mgat2 (ENSOJAG00000023318) #22	ENSOJAG00000023312	rps6kc1 (ENSOJAG00000023288)	ENSOJAG00000023278	prox1a (ENSOJAG00000023266)	smyd2b (ENSOJAG00000023140)	PTPN14 (ENSOJAG00000023097)	ENSOJAG00000023088	cep57l1 (ENSOJAG00000023083)	ENSOJAG00000023078	ppil6 (ENSOJAG00000023065)	ENSOJAG00000023047	msgn1 (ENSOJAG00000023041)	mrps10 (ENSOJAG00000023038)	tulp4a (ENSOJAG00000023032)	tmem181 (ENSOJAG00000023025)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000011776	ENSGT00390000007279	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164609.a	ENSGT00940000166133	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00530000063085.A.a	ENSGT00940000155656	ENSGT00940000154790.a.a.b	ENSGT00940000166832	ENSGT00940000156874	ENSGT00390000016811.h	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT00390000009045	ENSGT00940000155913.d	ENSGT00390000007183	ENSGT00390000004028
Chinese medaka	MODERN SPECIES	1302	tab2 (ENSOSIG00000012081)	amd1 (ENSOSIG00000012076)	CDK19 (ENSOSIG00000012054)	rpf2 (ENSOSIG00000012048)	slc16a10 (ENSOSIG00000012047)	ENSOSIG00000012042	ENSOSIG00000012039	ENSOSIG00000012038	ENSOSIG00000012036	arf6a (ENSOSIG00000012035) #30	prpf39 (ENSOSIG00000011663)	faua (ENSOSIG00000011659)	ENSOSIG00000011658	MDGA2 (ENSOSIG00000011384) #14	ENSOSIG00000011369	mgat2 (ENSOSIG00000011367) #22	ENSOSIG00000011364	rps6kc1 (ENSOSIG00000011354)	prox1a (ENSOSIG00000011334)	smyd2b (ENSOSIG00000011282)	PTPN14 (ENSOSIG00000011265)	ENSOSIG00000011261	cep57l1 (ENSOSIG00000011256)	ppil6 (ENSOSIG00000011248)	ENSOSIG00000011228	msgn1 (ENSOSIG00000011224)	mrps10 (ENSOSIG00000011222)	tulp4a (ENSOSIG00000023929)	gtf2h5 (ENSOSIG00000023925)	serac1 (ENSOSIG00000023923)	myct1a (ENSOSIG00000023899)
Japanese Medaka HdrR	MODERN SPECIES	16	MDGA2 (ENSORLG00000015040) #14	ENSORLG00000029004	ENSORLG00000027776	ENSORLG00000010929	ENSORLG00000029061	ENSORLG00000027962	ENSORLG00000029949	ENSORLG00000024112	ENSORLG00000023240	ENSORLG00000029488	ENSORLG00000025907	ENSORLG00000029914	ENSORLG00000005660	ENSORLG00000023534	ENSORLG00000015002	mgat2 (ENSORLG00000014997) #22	ENSORLG00000014993	rps6kc1 (ENSORLG00000014984)	prox1 (ENSORLG00000014947)	smyd2b (ENSORLG00000014927)	PTPN14 (ENSORLG00000014908)	ENSORLG00000014880	cep57l1 (ENSORLG00000014870)	ENSORLG00000026587	ppil6 (ENSORLG00000014836)	ENSORLG00000024497	msgn1 (ENSORLG00000014828)	mrps10 (ENSORLG00000014824)	tulp4a (ENSORLG00000014814)	tmem181 (ENSORLG00000014790)	gtf2h5 (ENSORLG00000030407)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.g.b	ENSGT00940000166514.g.a	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.g.b	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000180558	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000181419	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B
Amphiprion	ANCESTRAL SPECIES	55	ENSGT00510000048522.j.a	ENSGT00940000160164.m.b	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.g.b	ENSGT00940000156593 #30	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000180558	ENSGT00940000155369.A.d.b #14	ENSGT00940000154856.A.b	ENSGT00940000161931	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000181419	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B
Clown anemonefish	MODERN SPECIES	1378													MDGA2 (ENSAOCG00000024106) #14	ENSAOCG00000024086	ENSAOCG00000024052	mgat2 (ENSAOCG00000024025) #22	WDR20 (ENSAOCG00000002789)	hsp90aa1.1 (ENSAOCG00000024001)	hsp90aa1.2 (ENSAOCG00000023994)	ppp2r5cb (ENSAOCG00000023970)	DIO3 (ENSAOCG00000023944)	slc25a47a (ENSAOCG00000023939)	slc25a29 (ENSAOCG00000023929)	vrtn (ENSAOCG00000023923)
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000023649	actr10 (ENSAPEG00000023627)	actr10 (ENSAPEG00000023585)	ENSAPEG00000023580	naa30 (ENSAPEG00000023571)	ENSAPEG00000023531	ENSAPEG00000023527	ENSAPEG00000023520	arf6a (ENSAPEG00000023514) #30	prpf39 (ENSAPEG00000023507)	FKBP3 (ENSAPEG00000023454)	faua (ENSAPEG00000023441)	MDGA2 (ENSAPEG00000023402) #14	ENSAPEG00000023301	ENSAPEG00000023282	mgat2 (ENSAPEG00000023279) #22	WDR20 (ENSAPEG00000023259)	hsp90aa1.1 (ENSAPEG00000023220)	hsp90aa1.2 (ENSAPEG00000023211)	ppp2r5cb (ENSAPEG00000023180)	ENSAPEG00000023162	DIO3 (ENSAPEG00000023156)	slc25a47a (ENSAPEG00000023150)	slc25a29 (ENSAPEG00000023144)	ENSAPEG00000023138	vrtn (ENSAPEG00000023134)	syndig1l (ENSAPEG00000023081)	dll4 (ENSAPEG00000023015)	chac1 (ENSAPEG00000022979)	ino80 (ENSAPEG00000022911)	vps18 (ENSAPEG00000022883)
Spiny chromis	MODERN SPECIES	408														ENSAPOG00000019665	rps29 (ENSAPOG00000019676) #18	mgat2 (ENSAPOG00000019697) #22	WDR20 (ENSAPOG00000001103)	hsp90aa1.1 (ENSAPOG00000019744)	hsp90aa1.2 (ENSAPOG00000019811)	ppp2r5cb (ENSAPOG00000019894)	ENSAPOG00000019914	DIO3 (ENSAPOG00000019922)	slc25a47a (ENSAPOG00000019936)	slc25a29 (ENSAPOG00000019948)	vrtn (ENSAPOG00000019958)	syndig1l (ENSAPOG00000019962)
Bicolor damselfish	MODERN SPECIES	2177														ENSSPAG00000009639	ENSSPAG00000009676	mgat2 (ENSSPAG00000009681) #22	tbpl1 (ENSSPAG00000009697)	slc2a12 (ENSSPAG00000009714)	SGK1 (ENSSPAG00000009741)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT01100000263540.A.b.a.b	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b.l	ENSGT00940000161051.a.b.k	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b.l	ENSGT00940000161051.a.b.k	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b.l	ENSGT00940000161051.a.b.k	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890
Burton s mouthbrooder	MODERN SPECIES	289	ENTPD5 (ENSHBUG00000017549)	znf410 (ENSHBUG00000017635)	ENSHBUG00000017650	ENSHBUG00000017666	actr10 (ENSHBUG00000017735)	ENSHBUG00000017749	naa30 (ENSHBUG00000017762)	ENSHBUG00000017768	ENSHBUG00000017844	prpf39 (ENSHBUG00000017870)	faua (ENSHBUG00000017890)	FKBP3 (ENSHBUG00000017917)	ENSHBUG00000017980	MDGA2 (ENSHBUG00000018096) #14	rps29 (ENSHBUG00000018115) #18	mgat2 (ENSHBUG00000018122) #22	WDR20 (ENSHBUG00000018153)	hsp90aa1.1 (ENSHBUG00000022200)	hsp90aa1.2 (ENSHBUG00000022372)	ppp2r5cb (ENSHBUG00000022453)	ENSHBUG00000000904	ENSHBUG00000022476	slc25a47a (ENSHBUG00000022491)	slc25a29 (ENSHBUG00000022504)	vrtn (ENSHBUG00000022518)	syndig1l (ENSHBUG00000022529)	dll4 (ENSHBUG00000022543)	chac1 (ENSHBUG00000000988)	ino80 (ENSHBUG00000022614)	vps18 (ENSHBUG00000022642)	rhov (ENSHBUG00000022664)
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00390000007479	ENSGT00940000154514	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b.l	ENSGT00940000161051.a.b.k	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a.c	ENSGT00390000011890
P. nyererei	MODERN SPECIES	308	ENSPNYG00000001651	ENSPNYG00000001661	actr10 (ENSPNYG00000001682)	naa30 (ENSPNYG00000001730)	ENSPNYG00000001743	ENSPNYG00000001821	arf6a (ENSPNYG00000001854) #30	prpf39 (ENSPNYG00000001984)	faua (ENSPNYG00000002068)	FKBP3 (ENSPNYG00000002035)	MDGA2 (ENSPNYG00000002091) #14	ENSPNYG00000002156	ENSPNYG00000002350	ENSPNYG00000002694	ENSPNYG00000002710	mgat2 (ENSPNYG00000002727) #22	WDR20 (ENSPNYG00000002739)	hsp90aa1.1 (ENSPNYG00000002764)	hsp90aa1.2 (ENSPNYG00000002777)	ppp2r5cb (ENSPNYG00000002819)	DIO3 (ENSPNYG00000002880)	slc25a47a (ENSPNYG00000002897)	slc25a29 (ENSPNYG00000002929)	vrtn (ENSPNYG00000002938)	syndig1l (ENSPNYG00000002954)	dll4 (ENSPNYG00000002972)	chac1 (ENSPNYG00000002981)	ino80 (ENSPNYG00000002995)	vps18 (ENSPNYG00000003096)	rhov (ENSPNYG00000003215)	pigh (ENSPNYG00000003222)
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000158098	ENSGT00510000048522.j.a	ENSGT00940000175612	ENSGT00910000144250	ENSGT00390000012816	ENSGT00390000005665	ENSGT00950000183050.b.b.b.a.b.a.d	ENSGT00940000166514.h	ENSGT00390000005033	ENSGT00940000154514	ENSGT00390000007479	ENSGT00940000155369.A.d.b #14	ENSGT00940000161051.a.b.l	ENSGT00940000161051.a.b.k	ENSGT00940000154720 #18	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a.c	ENSGT00390000011890
Eastern happy	MODERN SPECIES	6	actr10 (ENSACLG00000026785)	ENSACLG00000026817	naa30 (ENSACLG00000026826)	ENSACLG00000000203	ENSACLG00000000209	ENSACLG00000000258	prpf39 (ENSACLG00000000275)	FKBP3 (ENSACLG00000000398)	faua (ENSACLG00000000354)	MDGA2 (ENSACLG00000000588) #14	ENSACLG00000000600	ENSACLG00000000626	ENSACLG00000000865	ENSACLG00000000895	rps29 (ENSACLG00000000915) #18	mgat2 (ENSACLG00000000923) #22	WDR20 (ENSACLG00000000934)	hsp90aa1.1 (ENSACLG00000001001)	hsp90aa1.2 (ENSACLG00000005799)	ppp2r5cb (ENSACLG00000005816)	DIO3 (ENSACLG00000005902)	slc25a47a (ENSACLG00000005913)	slc25a29 (ENSACLG00000005930)	vrtn (ENSACLG00000006192)	syndig1l (ENSACLG00000006204)	dll4 (ENSACLG00000006587)	chac1 (ENSACLG00000006601)	ino80 (ENSACLG00000006610)	vps18 (ENSACLG00000006651)	rhov (ENSACLG00000006677)	pigh (ENSACLG00000006687)
Zebra mbuna	MODERN SPECIES	1097	znf410 (ENSMZEG00005011144)	ENSMZEG00005011159	ENSMZEG00005011168	actr10 (ENSMZEG00005011179)	ENSMZEG00005011200	naa30 (ENSMZEG00005011206)	ENSMZEG00005011215	ENSMZEG00005011221	arf6a (ENSMZEG00005011248) #30	prpf39 (ENSMZEG00005012051)	FKBP3 (ENSMZEG00005012074)	faua (ENSMZEG00005012085)	MDGA2 (ENSMZEG00005012147) #14	ENSMZEG00005012241	rps29 (ENSMZEG00005012261) #18	mgat2 (ENSMZEG00005012273) #22	WDR20 (ENSMZEG00005012285)	hsp90aa1.2 (ENSMZEG00005012318)	ENSMZEG00005012341	ppp2r5cb (ENSMZEG00005012355)	DIO3 (ENSMZEG00005012424)	slc25a47a (ENSMZEG00005012432)	slc25a29 (ENSMZEG00005012448)	vrtn (ENSMZEG00005012465)	syndig1l (ENSMZEG00005012478)	ENSMZEG00005012494	med23 (ENSMZEG00005012500)	ENSMZEG00005012540	ehd3 (ENSMZEG00005012558)	ENSMZEG00005012571	stum (ENSMZEG00005012718)
Lyretail cichlid	MODERN SPECIES	316	ENTPD5 (ENSNBRG00000021209)	znf410 (ENSNBRG00000021256)	ENSNBRG00000021278	ENSNBRG00000021287	actr10 (ENSNBRG00000021299)	naa30 (ENSNBRG00000021325)	ENSNBRG00000021358	arf6a (ENSNBRG00000021379) #30	prpf39 (ENSNBRG00000021450)	faua (ENSNBRG00000021496)	FKBP3 (ENSNBRG00000021514)	MDGA2 (ENSNBRG00000021530) #14	ENSNBRG00000021591	ENSNBRG00000021641	rps29 (ENSNBRG00000021854) #18	mgat2 (ENSNBRG00000021862) #22	WDR20 (ENSNBRG00000021871)	hsp90aa1.1 (ENSNBRG00000021887)	hsp90aa1.2 (ENSNBRG00000021902)	ENSNBRG00000021938	ppp2r5cb (ENSNBRG00000021954)	ENSNBRG00000021973	ENSNBRG00000021983	slc25a47a (ENSNBRG00000021997)	slc25a29 (ENSNBRG00000022005)	vrtn (ENSNBRG00000022029)	syndig1l (ENSNBRG00000022037)	dll4 (ENSNBRG00000022053)	chac1 (ENSNBRG00000022068)	ino80 (ENSNBRG00000022086)	vps18 (ENSNBRG00000022145)
Nile tilapia	MODERN SPECIES	6	znf410 (ENSONIG00000000876)	ENSONIG00000039322	actr10 (ENSONIG00000000870)	ENSONIG00000025379	naa30 (ENSONIG00000040086)	ENSONIG00000000866	ENSONIG00000032793	prpf39 (ENSONIG00000000859)	faua (ENSONIG00000000854)	fkbp3 (ENSONIG00000034280)	MDGA2 (ENSONIG00000000831) #14	ENSONIG00000029197	ENSONIG00000000840	ENSONIG00000027640	ENSONIG00000029090	mgat2 (ENSONIG00000020916) #22	WDR20 (ENSONIG00000000823)	hsp90aa1.1 (ENSONIG00000000819)	ppp2r5cb (ENSONIG00000000795)	slc25a47 (ENSONIG00000000791)	slc25a29 (ENSONIG00000000788)	vrtn (ENSONIG00000000787)	syndig1l (ENSONIG00000033291)	dll4 (ENSONIG00000000782)	chac1 (ENSONIG00000029837)	ino80 (ENSONIG00000000772)	vps18 (ENSONIG00000000764)	rhov (ENSONIG00000041694)	pigh (ENSONIG00000041084)	ZFYVE1 (ENSONIG00000000754)	wdr21 (ENSONIG00000000746)
Midas cichlid	MODERN SPECIES	651	znf410 (ENSACIG00000003986)	ENSACIG00000003951	ENSACIG00000003932	actr10 (ENSACIG00000003903)	naa30 (ENSACIG00000003881)	ENSACIG00000003795	ENSACIG00000003770	arf6a (ENSACIG00000003701) #30	prpf39 (ENSACIG00000003671)	faua (ENSACIG00000003658)	FKBP3 (ENSACIG00000003645)	ENSACIG00000003640	MDGA2 (ENSACIG00000003600) #14	ENSACIG00000003539	rps29 (ENSACIG00000003518) #18	mgat2 (ENSACIG00000003512) #22	WDR20 (ENSACIG00000003489)	hsp90aa1.1 (ENSACIG00000002283)	hsp90aa1.2 (ENSACIG00000002228)	ppp2r5cb (ENSACIG00000002209)	DIO3 (ENSACIG00000002208)	slc25a47a (ENSACIG00000002178)	slc25a29 (ENSACIG00000002152)	vrtn (ENSACIG00000002141)	syndig1l (ENSACIG00000002136)	ENSACIG00000002124	dll4 (ENSACIG00000002066)	chac1 (ENSACIG00000002018)	ino80 (ENSACIG00000001918)	vps18 (ENSACIG00000001889)	rhov (ENSACIG00000001881)
Tiger tail seahorse	MODERN SPECIES	450	ENSHCOG00000014809	acat2 (ENSHCOG00000014816)	wtap (ENSHCOG00000014785)	ENSHCOG00000014761	sod2 (ENSHCOG00000014748)	slc25a29 (ENSHCOG00000014732)	slc25a47a (ENSHCOG00000014703)	ENSHCOG00000000411	ENSHCOG00000014684	ppp2r5cb (ENSHCOG00000014671)	HSP90AA1 (ENSHCOG00000014636)	hsp90aa1.1 (ENSHCOG00000014614)	MDGA2 (ENSHCOG00000014586) #14	ENSHCOG00000014550	ENSHCOG00000014532	mgat2 (ENSHCOG00000014525) #22	WDR20 (ENSHCOG00000014518)	FKBP3 (ENSHCOG00000014481)	faua (ENSHCOG00000014508)	prpf39 (ENSHCOG00000014454)	zbtb2b (ENSHCOG00000014426)	armt1 (ENSHCOG00000014400)	esr1 (ENSHCOG00000014381)	ENSHCOG00000014373	ENSHCOG00000014343	ENSHCOG00000014325	ENSHCOG00000014316	ENSHCOG00000014305	ENSHCOG00000014287	myct1a (ENSHCOG00000014230)	serac1 (ENSHCOG00000014216)
Protacanthopterygii	ANCESTRAL SPECIES	151													ENSGT00940000160164.m.b	ENSGT00940000155369.A.d.b #14	ENSGT00940000161931.hb	ENSGT00390000007341.a #22	ENSGT00390000007686.b.c.a	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT01060000248799.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	144	ENSGT01100000263540.A.b.a.b.b	ENSGT00940000158098.o	ENSGT00510000048522.j.a.f	ENSGT00910000144250.f	ENSGT00390000012816.d	ENSGT00390000005665.e.b	ENSGT00940000155014.bc.b	ENSGT00950000183050.b.b.b.a.b.a.d.f	ENSGT00940000156593.f.b #30	ENSGT00390000005033.h	ENSGT00390000007479.e.b	ENSGT00940000154514.xb	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d #14	ENSGT00940000161931.ib	ENSGT00390000007341.a.i #22	ENSGT01060000248717.a.b.b.b	ENSGT00940000159582.h	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.d	ENSGT01020000230401.a.a.b.b	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b	ENSGT01030000235230
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT01100000263540.A.b.a.b.b	ENSGT00940000158098.o	ENSGT00510000048522.j.a.f	ENSGT00910000144250.f	ENSGT00390000012816.d	ENSGT00390000005665.e.b	ENSGT00940000155014.bc.b	ENSGT00950000183050.b.b.b.a.b.a.d.f	ENSGT00940000156593.f.b #30	ENSGT00390000005033.h	ENSGT00390000007479.e.b	ENSGT00940000154514.xb	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d #14	ENSGT00940000161931.ib	ENSGT00390000007341.a.i #22	ENSGT01060000248717.a.b.b.b	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b	ENSGT00390000005861.a.d	ENSGT00940000174980	ENSGT00940000156546.`b.a.f	ENSGT00390000010056.b.f
Salmo	ANCESTRAL SPECIES	12	ENSGT01100000263540.A.b.a.b.b	ENSGT00940000158098.o	ENSGT00510000048522.j.a.f	ENSGT00910000144250.f	ENSGT00390000012816.d	ENSGT00390000005665.e.b	ENSGT00940000155014.bc.b	ENSGT00950000183050.b.b.b.a.b.a.d.f	ENSGT00940000156593.f.b #30	ENSGT00390000005033.h	ENSGT00390000007479.e.b	ENSGT00940000154514.xb	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d #14	ENSGT00940000161931.ib	ENSGT00390000007341.a.i #22	ENSGT01060000248717.a.b.a	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248717.b.a.a.a	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b	ENSGT00390000005861.a.d	ENSGT00940000174980	ENSGT00940000156546.`b.a.f
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	25	znf410 (ENSSSAG00000040356)	ENSSSAG00000108139	actr10 (ENSSSAG00000040472)	ENSSSAG00000040602	NAA30 (ENSSSAG00000040612)	ENSSSAG00000121976	ENSSSAG00000105129	ENSSSAG00000092521	ARF6 (ENSSSAG00000040657) #30	ENSSSAG00000040681	ENSSSAG00000099473	ENSSSAG00000041029	ENSSSAG00000041112 #14	ENSSSAG00000042474	ENSSSAG00000110723	mgat2 (ENSSSAG00000042517) #22	ENSSSAG00000052456	ENSSSAG00000119421	ENSSSAG00000042593	hsp90aa1.2 (ENSSSAG00000042708)	ppp2r5cb (ENSSSAG00000044388)	ENSSSAG00000111256	ENSSSAG00000043679	slc25a47a (ENSSSAG00000043687)	slc25a29 (ENSSSAG00000119321)	ENSSSAG00000043734	ENSSSAG00000043741	ENSSSAG00000115098	sn25a (ENSSSAG00000043755)	sccpdhb (ENSSSAG00000044042)	ENSSSAG00000044141
Atlantic salmon	MODERN SPECIES	25	HLX (ENSSSAG00000065263)	DUSP10 (ENSSSAG00000065276)	taf1a (ENSSSAG00000106442)	AIDA (ENSSSAG00000089127)	ENSSSAG00000081798	ENSSSAG00000097406	ENSSSAG00000120681	tmem151ba (ENSSSAG00000089770)	nfkbie (ENSSSAG00000002385)	slc35b2 (ENSSSAG00000002407)	hsp90ab1 (ENSSSAG00000002480)	ENSSSAG00000100829	PSA6 (ENSSSAG00000002721)	ENSSSAG00000116006	ENSSSAG00000086049	ENSSSAG00000107130 #22	ENSSSAG00000017836	ENSSSAG00000107168	ENSSSAG00000091653	ENSSSAG00000084893	ENSSSAG00000095087	ENSSSAG00000089191	ENSSSAG00000101062	ENSSSAG00000088190	ENSSSAG00000083558	ENSSSAG00000083991	ENSSSAG00000103012	LAPTM4A (ENSSSAG00000101988)	ENSSSAG00000046832	RHOB (ENSSSAG00000091726)	ENSSSAG00000046676
River trout	MODERN SPECIES		ENTPD5 (ENSSTUG00000004375)	znf410 (ENSSTUG00000004305)	ENSSTUG00000004285	actr10 (ENSSTUG00000004186)	ENSSTUG00000004158	NAA30 (ENSSTUG00000004147)	ENSSTUG00000004132	ENSSTUG00000004112	ARF6 (ENSSTUG00000004090) #30	prpf39 (ENSSTUG00000003785)	faua (ENSSTUG00000003742)	FKBP3 (ENSSTUG00000003693)	ENSSTUG00000003680	MDGA2 (ENSSTUG00000002107) #14	ENSSTUG00000002033	mgat2 (ENSSTUG00000002030) #22	ENSSTUG00000002024	ENSSTUG00000002016	ENSSTUG00000001967	WDR20 (ENSSTUG00000001925)	hsp90aa1.2 (ENSSTUG00000001605)	ppp2r5cb (ENSSTUG00000000840)	ENSSTUG00000000785	ENSSTUG00000000780	slc25a47a (ENSSTUG00000000777)	slc25a29 (ENSSTUG00000000770)	ENSSTUG00000000764	ENSSTUG00000000753	snap25a (ENSSTUG00000000740)	sccpdhb (ENSSTUG00000000730)	cnstb (ENSSTUG00000000725)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT01100000263540.A.b.a.b.b	ENSGT00940000158098.o	ENSGT00510000048522.j.a.f	ENSGT00910000144250.f	ENSGT00390000012816.d	ENSGT00390000005665.e.b	ENSGT00940000155014.bc.b	ENSGT00950000183050.b.b.b.a.b.a.d.f	ENSGT00940000166514	ENSGT00390000005033.h	ENSGT00390000007479.e.b	ENSGT00940000154514.xb	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d #14	ENSGT00940000161931.ib	ENSGT00390000007341.a.i #22	ENSGT01060000248717.a.b.b.b	ENSGT00940000159582.h	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000004799.bc.b	ENSGT00390000005861.a.d	ENSGT00940000156546.`b.a.f	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b
Rainbow trout	MODERN SPECIES	25	znf410 (ENSOMYG00000000433)	ENSOMYG00000000468	actr10 (ENSOMYG00000000504)	ENSOMYG00000000520	NAA30 (ENSOMYG00000000526)	ENSOMYG00000000541	ENSOMYG00000063348	ENSOMYG00000000572	prpf39 (ENSOMYG00000000752)	ENSOMYG00000000833	ENSOMYG00000000866	ENSOMYG00000076152	ENSOMYG00000077496	ENSOMYG00000057749	ENSOMYG00000001626 #14	mgat2 (ENSOMYG00000002091) #22	ENSOMYG00000002073	ENSOMYG00000002203	ENSOMYG00000002369	ENSOMYG00000002397	hsp90aa1.2 (ENSOMYG00000002842)	ppp2r5cb (ENSOMYG00000004992)	ENSOMYG00000058211	ENSOMYG00000006580	ENSOMYG00000006583	slc25a47a (ENSOMYG00000006624)	slc25a29 (ENSOMYG00000006681)	ENSOMYG00000006718	snap25a (ENSOMYG00000006749)	ENSOMYG00000066679	sccpdhb (ENSOMYG00000006783)
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT01100000263540.A.b.a.b.b	ENSGT00940000158098.o	ENSGT00510000048522.j.a.f	ENSGT00910000144250.f	ENSGT00390000012816.d	ENSGT00390000005665.e.b	ENSGT00940000155014.bc.b	ENSGT00950000183050.b.b.b.a.b.a.d.f	ENSGT00940000166514	ENSGT00390000005033.h	ENSGT00390000007479.e.b	ENSGT00940000154514.xb	ENSGT00940000164539.l	ENSGT00940000155369.A.d.b.d #14	ENSGT00940000161931.ib	ENSGT00390000007341.a.i #22	ENSGT01060000248717.a.b.b.b	ENSGT01060000248717.a.a.b	ENSGT00390000007686.b.c.a.f	ENSGT01020000230401.a.a.b.a.a.a	ENSGT01030000234620.a.a.a.a.a.a.c.b	ENSGT00940000154482.b.b.a.d.vb.a	ENSGT00940000159694.b	ENSGT00940000157766.b.b.h	ENSGT01060000248799.b	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.a	ENSGT00390000005861.a.d	ENSGT00940000156546.`b.a.f	ENSGT00390000010056.b.f	ENSGT01030000234517.H.b.j.b	ENSGT00940000156491.a.g.b
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005030034	actr10 (ENSOTSG00005030037)	ENSOTSG00005030102	NAA30 (ENSOTSG00005030104)	ENSOTSG00005030105	ENSOTSG00005030107	ENSOTSG00005030109	prpf39 (ENSOTSG00005030121)	faua (ENSOTSG00005031639)	FKBP3 (ENSOTSG00005001956)	ENSOTSG00005002172	MDGA2 (ENSOTSG00005003360) #14	ENSOTSG00005004380	ENSOTSG00005004382	ENSOTSG00005004383	mgat2 (ENSOTSG00005004387) #22	ENSOTSG00005004388	ENSOTSG00005004391	ENSOTSG00005004392	ENSOTSG00005004394	ENSOTSG00005004395	slc25a47a (ENSOTSG00005004396)	slc25a29 (ENSOTSG00005004399)	ENSOTSG00005004402	snap25a (ENSOTSG00005004405)	sccpdhb (ENSOTSG00005004431)	ENSOTSG00005004546	pcdh10a (ENSOTSG00005004548)	hnrnpub (ENSOTSG00005004575)	lft1 (ENSOTSG00005006419)	cdc42bpab (ENSOTSG00005006432)
Coho salmon	MODERN SPECIES	13	ALDH6A1 (ENSOKIG00005038973)	ENTPD5 (ENSOKIG00005039291)	znf410 (ENSOKIG00005039488)	ENSOKIG00005039512	actr10 (ENSOKIG00005039543)	ENSOKIG00005039909	NAA30 (ENSOKIG00005039914)	ENSOKIG00005006090	ENSOKIG00005006103	ENSOKIG00005006118	prpf39 (ENSOKIG00005006255)	ENSOKIG00005006892	FKBP3 (ENSOKIG00005006921)	ENSOKIG00005006938	MDGA2 (ENSOKIG00005007118) #14	mgat2 (ENSOKIG00005009521) #22	ENSOKIG00005009531	ENSOKIG00005009557	WDR20 (ENSOKIG00005009606)	hsp90aa1.2 (ENSOKIG00005009675)	ppp2r5cb (ENSOKIG00005010194)	ENSOKIG00005010568	ENSOKIG00005010571	slc25a47a (ENSOKIG00005010582)	slc25a29 (ENSOKIG00005010590)	ENSOKIG00005010605	snap25a (ENSOKIG00005010617)	ENSOKIG00005010622	cnstb (ENSOKIG00005010644)	ENSOKIG00005010647	hnrnpub (ENSOKIG00005010739)
Huchen	MODERN SPECIES	990															rps29 (ENSHHUG00000041444) #18	mgat2 (ENSHHUG00000041455) #22	ENSHHUG00000041457	ENSHHUG00000041462	dnal1 (ENSHHUG00000041481)	ENSHHUG00000041529
Salmoninae	ANCESTRAL SPECIES	199	ENSGT01100000263540.A.b.a.b.a	ENSGT00940000158098.p	ENSGT00510000048522.j.a.e	ENSGT00940000160164.m.b	ENSGT00910000144250.e	ENSGT00390000012816.c	ENSGT00390000005665.e.a	ENSGT00940000155014.bc.a	ENSGT00950000183050.b.b.b.a.b.a.d.e	ENSGT00940000156593.f.a #30	ENSGT00390000005033.g	ENSGT00390000007479.e.a	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c #14	ENSGT00940000161931.hb	ENSGT00390000007341.a.j #22	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a.e	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a
Huchen	MODERN SPECIES	197	ALDH6A1 (ENSHHUG00000028182)	ENTPD5 (ENSHHUG00000028169)	znf410 (ENSHHUG00000028163)	ENSHHUG00000028159	ENSHHUG00000028155	actr10 (ENSHHUG00000028146)	ENSHHUG00000028141	ENSHHUG00000028134	ENSHHUG00000028128	ENSHHUG00000028127	prpf39 (ENSHHUG00000027973)	faua (ENSHHUG00000027937)	FKBP3 (ENSHHUG00000027916)	MDGA2 (ENSHHUG00000027683) #14	ENSHHUG00000027672	mgat2 (ENSHHUG00000027668) #22
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT01100000263540.A.b.a.b.a	ENSGT00940000158098.p	ENSGT00510000048522.j.a.e	ENSGT00940000160164.m.b	ENSGT00910000144250.e	ENSGT00390000012816.c	ENSGT00390000005665.e.a	ENSGT00940000155014.bc.a	ENSGT00950000183050.b.b.b.a.b.a.d.e	ENSGT00940000156593.f.a #30	ENSGT00390000005033.g	ENSGT00390000007479.e.a	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c #14	ENSGT00940000161931.hb	ENSGT00390000007341.a.j #22	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a	ENSGT00390000005861.a.c	ENSGT00940000156992.e	ENSGT00940000156546.`b.a.e	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a
Salmo	ANCESTRAL SPECIES	26	ENSGT01100000263540.A.b.a.b.a	ENSGT00940000158098.p	ENSGT00510000048522.j.a.e	ENSGT00940000160164.m.b	ENSGT00910000144250.e	ENSGT00390000012816.c	ENSGT00390000005665.e.a	ENSGT00940000155014.bc.a	ENSGT00950000183050.b.b.b.a.b.a.d.e	ENSGT00940000156593.f.a #30	ENSGT00390000005033.g	ENSGT00390000007479.e.a	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c #14	ENSGT00940000161931.hb	ENSGT00390000007341.a.j #22	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a	ENSGT00390000005861.a.c	ENSGT00940000156992.e	ENSGT00940000156546.`b.a.e	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a
River trout	MODERN SPECIES	28	ENSSTUG00000024668	znf410 (ENSSTUG00000025170)	ENSSTUG00000025193	ENSSTUG00000025202	actr10 (ENSSTUG00000025225)	ENSSTUG00000025272	NAA30 (ENSSTUG00000025281)	ENSSTUG00000025304	ENSSTUG00000025314	arf6a (ENSSTUG00000025319) #30	prpf39 (ENSSTUG00000025345)	faua (ENSSTUG00000026106)	FKBP3 (ENSSTUG00000026204)	MDGA2 (ENSSTUG00000026288) #14	ENSSTUG00000027953	mgat2 (ENSSTUG00000027960) #22	ENSSTUG00000027971	WDR20 (ENSSTUG00000032401)	hsp90aa1.1 (ENSSTUG00000032559)	ppp2r5cb (ENSSTUG00000033989)	ENSSTUG00000038125	ENSSTUG00000038130	slc25a29 (ENSSTUG00000038134)	ankef1a (ENSSTUG00000038153)	snap25a (ENSSTUG00000038173)	sccpdhb (ENSSTUG00000038297)	cnstb (ENSSTUG00000038526)	KIF26B (ENSSTUG00000038536)	hnrnpub (ENSSTUG00000038557)	lft1 (ENSSTUG00000038621)	cdc42bpab (ENSSTUG00000038977)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000122119	ENSSSAG00000067099	actr10 (ENSSSAG00000067060)	ENSSSAG00000067049	NAA30 (ENSSSAG00000109373)	ENSSSAG00000101923	ENSSSAG00000104434	ENSSSAG00000108478	ENSSSAG00000111534	ENSSSAG00000110668 #30	prpf39 (ENSSSAG00000066966)	ENSSSAG00000066906	ENSSSAG00000066895	ENSSSAG00000065523 #14	rps29 (ENSSSAG00000065477)	mgat2 (ENSSSAG00000065470) #22	ENSSSAG00000065380	hsp90aa1.1 (ENSSSAG00000120636)	hsp90aa1.2 (ENSSSAG00000063834)	ppp2r5cb (ENSSSAG00000046833)	slc25a29 (ENSSSAG00000046599)	ankef1a (ENSSSAG00000046589)	ENSSSAG00000046503	sccpdhb (ENSSSAG00000046257)	cnstb (ENSSSAG00000106067)	ENSSSAG00000046242	hnrnpub (ENSSSAG00000045985)	lft1 (ENSSSAG00000045961)	cdc42bpab (ENSSSAG00000044396)	fzd3a (ENSSSAG00000044252)	fbxo16 (ENSSSAG00000044237)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT01100000263540.A.b.a.b.a	ENSGT00940000158098.p	ENSGT00510000048522.j.a.e	ENSGT00940000160164.m.b	ENSGT00910000144250.e	ENSGT00390000012816.c	ENSGT00390000005665.e.a	ENSGT00940000155014.bc.a	ENSGT00950000183050.b.b.b.a.b.a.d.e	ENSGT00940000156593.f.a #30	ENSGT00390000005033.g	ENSGT00390000007479.e.a	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c #14	ENSGT00940000161931.hb	ENSGT00390000007341.a.j #22	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a	ENSGT00390000005861.a.c	ENSGT00940000156992.e	ENSGT00940000156546.`b.a.e	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000067424	ENSOMYG00000075248	ENSOMYG00000016175	ENSOMYG00000063801	ENSOMYG00000016170 #30	ENSOMYG00000057628	ENSOMYG00000015814	ENSOMYG00000015729	ENSOMYG00000015772	ENSOMYG00000061060	ENSOMYG00000015602 #14	ENSOMYG00000061030	ENSOMYG00000066325	ENSOMYG00000067458	ENSOMYG00000015511	ENSOMYG00000015312 #22	slc25a29 (ENSOMYG00000036313)	ENSOMYG00000068269	ENSOMYG00000073674	ENSOMYG00000036328	ENSOMYG00000068519	ppp2r5cb (ENSOMYG00000036431)	hsp90aa1.2 (ENSOMYG00000036907)	ENSOMYG00000036700	ankef1a (ENSOMYG00000036250)	ENSOMYG00000036183	ENSOMYG00000055832	sccpdhb (ENSOMYG00000035651)	cnstb (ENSOMYG00000066749)	ENSOMYG00000035566	hnrnpub (ENSOMYG00000035422)
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT01100000263540.A.b.a.b.a	ENSGT00940000158098.p	ENSGT00510000048522.j.a.e	ENSGT00940000160164.m.b	ENSGT00910000144250.e	ENSGT00390000012816.c	ENSGT00390000005665.e.a	ENSGT00940000155014.bc.a	ENSGT00950000183050.b.b.b.a.b.a.d.e	ENSGT00940000156593.f.a #30	ENSGT00390000005033.g	ENSGT00390000007479.e.a	ENSGT00940000154514.wb	ENSGT00940000155369.A.d.b.c #14	ENSGT00940000161931.hb	ENSGT00390000007341.a.j #22	ENSGT00390000007686.b.c.a.e	ENSGT01020000230401.a.a.b.a.a.b	ENSGT01030000234620.a.a.a.a.a.a.c.a	ENSGT00940000154482.b.b.a.d.vb.b	ENSGT00940000154482.b.b.a.d.wb	ENSGT00940000157766.b.b.g	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a.i.b	ENSGT00390000004799.bc.a	ENSGT00390000005861.a.c	ENSGT00940000156992.e	ENSGT00940000156546.`b.a.e	ENSGT00390000010056.b.e	ENSGT01030000234517.H.b.j.a	ENSGT00940000156491.a.g.a
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005037026	ENSOTSG00005036967	znf410 (ENSOTSG00005036960)	ENSOTSG00005036953	actr10 (ENSOTSG00005036910)	ENSOTSG00005036908	NAA30 (ENSOTSG00005036905)	ENSOTSG00005036903	ENSOTSG00005036901	arf6a (ENSOTSG00005036899) #30	prpf39 (ENSOTSG00005035762)	faua (ENSOTSG00005035746)	FKBP3 (ENSOTSG00005035745)	MDGA2 (ENSOTSG00005034899) #14	ENSOTSG00005034893	mgat2 (ENSOTSG00005034892) #22	WDR20 (ENSOTSG00005034876)	hsp90aa1.2 (ENSOTSG00005033077)	ppp2r5cb (ENSOTSG00005032589)	ENSOTSG00005032587	slc25a29 (ENSOTSG00005032586)	ankef1a (ENSOTSG00005032580)	snap25a (ENSOTSG00005032579)	sccpdhb (ENSOTSG00005032482)	KIF26B (ENSOTSG00005032481)	hnrnpub (ENSOTSG00005032480)	lft1 (ENSOTSG00005032479)	cdc42bpab (ENSOTSG00005002384)	fzd3a (ENSOTSG00005001905)	fbxo16 (ENSOTSG00005001900)	fam49a (ENSOTSG00005001874)
Coho salmon	MODERN SPECIES	3	ENSOKIG00005033997	znf410 (ENSOKIG00005033981)	ENSOKIG00005033973	ENSOKIG00005033962	actr10 (ENSOKIG00005033922)	ENSOKIG00005033914	NAA30 (ENSOKIG00005033906)	ENSOKIG00005033890	ENSOKIG00005033878	arf6a (ENSOKIG00005033871) #30	PRPF39 (ENSOKIG00005033560)	faua (ENSOKIG00005033439)	FKBP3 (ENSOKIG00005033415)	MDGA2 (ENSOKIG00005032908) #14	RPS29 (ENSOKIG00005032840) #18	mgat2 (ENSOKIG00005032816) #22	slc25a29 (ENSOKIG00005049433)	ENSOKIG00005049432	ENSOKIG00005049430	ENSOKIG00005049428	ppp2r5cb (ENSOKIG00005049372)	hsp90aa1.2 (ENSOKIG00005049002)	WDR20 (ENSOKIG00005048903)	ankef1a (ENSOKIG00005048864)	snap25a (ENSOKIG00005048846)	sccpdhb (ENSOKIG00005048793)	cnstb (ENSOKIG00005048777)	KIF26B (ENSOKIG00005048767)	hnrnpub (ENSOKIG00005048760)	lft1 (ENSOKIG00005048753)	cdc42bpab (ENSOKIG00005036375)
Northern pike	MODERN SPECIES	17	ENSELUG00000012223	ENSELUG00000012212	actr10 (ENSELUG00000012190)	ENSELUG00000012145	naa30 (ENSELUG00000012080)	ENSELUG00000012068	ENSELUG00000012053	arf6a (ENSELUG00000000436) #30	prpf39 (ENSELUG00000012011)	faua (ENSELUG00000011897)	FKBP3 (ENSELUG00000011829)	ENSELUG00000000428	MDGA2 (ENSELUG00000011789) #14	ENSELUG00000009186	ENSELUG00000011749	mgat2 (ENSELUG00000011719) #22	ENSELUG00000011705	ENSELUG00000034389	ENSELUG00000011691	ENSELUG00000011671	ENSELUG00000011648	ENSELUG00000011656	ENSELUG00000001585	WDR20 (ENSELUG00000011607)	hsp90aa1.2 (ENSELUG00000011559)	ppp2r5cb (ENSELUG00000011533)	DIO3 (ENSELUG00000011418)	slc25a47a (ENSELUG00000011395)	slc25a29 (ENSELUG00000011360)	ENSELUG00000011290	ankef1a (ENSELUG00000011203)
Spotted gar	MODERN SPECIES	673	arf6b (ENSLOCG00000017705) #30	C14orf28 (ENSLOCG00000011251)	KLHL28 (ENSLOCG00000011256)	TOGARAM1 (ENSLOCG00000011272)	prpf39 (ENSLOCG00000011282)	faua (ENSLOCG00000011291)	FKBP3 (ENSLOCG00000011306)	FANCM (ENSLOCG00000011318) #7	soul3 (ENSLOCG00000011338)	tpp1 (ENSLOCG00000011342)	ENSLOCG00000011351 #8	ENSLOCG00000011361	MDGA2 (ENSLOCG00000011370) #14	ENSLOCG00000011385	lrr1 (ENSLOCG00000011393) #20	mgat2 (ENSLOCG00000017706) #22	ENSLOCG00000011401 #23	KLHDC1 (ENSLOCG00000011420) #27	pole2 (ENSLOCG00000011434) #24	KLHDC2 (ENSLOCG00000011444) #28	NEMF (ENSLOCG00000011454) #29	MOK (ENSLOCG00000011479)	WDR20 (ENSLOCG00000011494)	hsp90aa1.1 (ENSLOCG00000011504)	DYNC1H1 (ENSLOCG00000011524)	PPP2R5C (ENSLOCG00000011558)	ENSLOCG00000017707	ENSLOCG00000011572	DLK1 (ENSLOCG00000011579)	si:dkey-174m14.3 (ENSLOCG00000011585)	WDR25 (ENSLOCG00000011593)
Reedfish	MODERN SPECIES	7	ENSECRG00000021777	pigh (ENSECRG00000021757)	rhov (ENSECRG00000021746)	vps18 (ENSECRG00000021723)	ino80 (ENSECRG00000021589)	chac1 (ENSECRG00000021530)	DLL4 (ENSECRG00000021518)	ENSECRG00000021494	ENSECRG00000021477	RASGRP1 (ENSECRG00000021450)	FAM98B (ENSECRG00000021432)	spred1 (ENSECRG00000021418)	MDGA2 (ENSECRG00000021380) #14	ENSECRG00000021357	lrr1 (ENSECRG00000021338) #20	mgat2 (ENSECRG00000021332) #22	DNAAF2 (ENSECRG00000021319) #23	KLHDC1 (ENSECRG00000021301) #27	pole2 (ENSECRG00000021155) #24	KLHDC2 (ENSECRG00000021106) #28	NEMF (ENSECRG00000021044) #29	MOK (ENSECRG00000021003)	WDR20 (ENSECRG00000020988)	hsp90aa1.1 (ENSECRG00000020860)	HSP90AA1 (ENSECRG00000020110)	ENSECRG00000020030	ENSECRG00000020014	DYNC1H1 (ENSECRG00000019794)	PPP2R5C (ENSECRG00000019624)	ENSECRG00000019572	ENSECRG00000019555
Elephant shark	MODERN SPECIES	1494													ENSCMIG00000016724	rps29 (ENSCMIG00000016722) #18	lrr1 (ENSCMIG00000016717) #20	mgat2 (ENSCMIG00000016716) #22	ENSCMIG00000016713 #23	pole2 (ENSCMIG00000016677) #24	KLHDC1 (ENSCMIG00000016657) #27	klhdc2 (ENSCMIG00000016615) #28	NEMF (ENSCMIG00000016564) #29	MOK (ENSCMIG00000016513)	WDR20 (ENSCMIG00000016507)	ENSCMIG00000016125	ENSCMIG00000016011	DYNC1H1 (ENSCMIG00000015898)	PPP2R5C (ENSCMIG00000015499)	ENSCMIG00000015364	ENSCMIG00000015361	DLK1 (ENSCMIG00000015358)	si:dkey-174m14.3 (ENSCMIG00000015355)
Cyclostomata	ANCESTRAL SPECIES	11													ENSGT00940000164539	ENSGT00940000156480 #7	ENSGT00940000158830 #20	ENSGT00390000007341.a #22	ENSGT00390000012435 #24	ENSGT00940000157150 #28
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	1266														fbxw5 (ENSPMAG00000005394)	NT5C1A (ENSPMAG00000005414)	mgat2 (ENSPMAG00000010322) #22	cmtr1 (ENSPMAG00000005418)
Lamprey	MODERN SPECIES	892													DNPH1 (ENSPMAG00000005532)	ENSPMAG00000005539	btbd9 (ENSPMAG00000005556)	mgat2 (ENSPMAG00000010328) #22	pole2 (ENSPMAG00000005591) #24	KLHDC2 (ENSPMAG00000005659) #28	ENSPMAG00000005694
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000007341.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00390000007341.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00390000007341.b ##22
Sarcopterygii	ANCESTRAL SPECIES	653													ENSGT00390000010210	ENSGT00940000157172	ENSGT00400000022349	ENSGT00390000007341.b ##22
Tetrapoda	ANCESTRAL SPECIES	339														ENSGT00940000158246	ENSGT00400000022349	ENSGT00390000007341.b ##22
Anura	ANCESTRAL SPECIES	452														ENSGT00940000158246	ENSGT00400000022349	ENSGT00390000007341.b ##22
Frog	MODERN SPECIES	5	xpo5 (ENSXETG00000010883)	ENSXETG00000003957	xpo5.2 (ENSXETG00000010884)	ENSXETG00000047945	polr1c (ENSXETG00000010882)	yipf3 (ENSXETG00000047304)	lrrc73 (ENSXETG00000042652)	tjap1 (ENSXETG00000045411)	ENSXETG00000046868	dlk2 (ENSXETG00000042444)	abcc10 (ENSXETG00000010586)	znf318 (ENSXETG00000039019)	ENSXETG00000046269	crip3 (ENSXETG00000045991)	rnf8 (ENSXETG00000010581)	XB22169453 [provisional] (ENSXETG00000045168) ##22	naglu (ENSXETG00000031856)	cmtr1 (ENSXETG00000009964)	kcnk5 (ENSXETG00000045856)	SAYSD1 (ENSXETG00000046980)	glp1r (ENSXETG00000046829)	btbd9 (ENSXETG00000048481)	zfand3 (ENSXETG00000047062)	ENSXETG00000047682	MDGA1 (ENSXETG00000034850)	ccdc167 (ENSXETG00000042938)	KCNK17 (ENSXETG00000042057)	kcnk16 (ENSXETG00000034968)	kif6 (ENSXETG00000040125)	daam2 (ENSXETG00000047053)	mocs1 (ENSXETG00000045378)
Leishan spiny toad	MODERN SPECIES	7	LRRC73 (ENSLLEG00000012740)	ENSLLEG00000012562	POLR1C (ENSLLEG00000012476)	ENSLLEG00000012443	XPO5 (ENSLLEG00000012066)	POLH (ENSLLEG00000011937)	ENSLLEG00000011915	GTPBP2 (ENSLLEG00000011786)	ENSLLEG00000011758	MAD2L1BP (ENSLLEG00000011739)	ENSLLEG00000011719	TCTE1 (ENSLLEG00000011695)	TMEM151B (ENSLLEG00000011669)	AARS2 (ENSLLEG00000011415)	ENSLLEG00000011334	ENSLLEG00000011314 ##22	GLO1 (ENSLLEG00000011119)	ENSLLEG00000011096	ENSLLEG00000011082	ENSLLEG00000010855	ENSLLEG00000010812	ENSLLEG00000010787	ENSLLEG00000010772	ZFAND3 (ENSLLEG00000010697)	ENSLLEG00000010663	ENSLLEG00000010646	ENSLLEG00000010630	ENSLLEG00000010617	ENSLLEG00000010604	MDGA1 (ENSLLEG00000010444)	ENSLLEG00000010421
Coelacanth	MODERN SPECIES	2494													ENSLACG00000007922	CMTR1 (ENSLACG00000006958)	RNF8 (ENSLACG00000006223)	ENSLACG00000005794 ##22	zgc:112001 (ENSLACG00000022610)	zgc:112001 (ENSLACG00000004277)	DLK2 (ENSLACG00000003582)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00390000007341.b ##22
Neopterygii	ANCESTRAL SPECIES	60	ENSGT00940000159665	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a	ENSGT00940000170599	ENSGT00390000016465	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00940000160410	ENSGT00940000156996.g	ENSGT00830000128368.a	ENSGT00940000160421	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a	ENSGT00940000159120.f	ENSGT00940000157927
Osteoglossocephalai	ANCESTRAL SPECIES	60	ENSGT00950000182767.a	ENSGT00940000170599	ENSGT00390000016465	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00940000157407	ENSGT00940000162464	ENSGT00940000160410	ENSGT00940000174492	ENSGT00940000167312	ENSGT00830000128368.a	ENSGT00940000156996.g	ENSGT00940000160421	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00940000158248.b	ENSGT00390000017237	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a	ENSGT00940000170599	ENSGT00390000016465	ENSGT00390000006681	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927	ENSGT01020000230401.a.a.a	ENSGT00730000111019.e.b	ENSGT00390000007015	ENSGT00390000010770	ENSGT00940000156087.a.b	ENSGT00390000016577.b.b	ENSGT00530000063737.l.a	ENSGT00940000176161	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a
Otomorpha	ANCESTRAL SPECIES	64			ENSGT00950000182767.a	ENSGT00390000016465	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00940000167697	ENSGT00390000006681	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927	ENSGT01020000230401.a.a.a	ENSGT00730000111019.e.b	ENSGT00390000007015.x	ENSGT00390000010770	ENSGT00940000156087.a.b	ENSGT00390000016577.b.b	ENSGT00530000063737.l.a	ENSGT00940000176161	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a
Clupeiformes	ANCESTRAL SPECIES	252	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a	ENSGT00390000016465	ENSGT00390000006681	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00940000157407	ENSGT00940000162464	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927	ENSGT00940000155691.c.b
Atlantic herring	MODERN SPECIES	6	DYNLT1 (ENSCHAG00000009445)	tmem181 (ENSCHAG00000009471)	tulp4a (ENSCHAG00000009724)	mrps10 (ENSCHAG00000009736)	msgn1 (ENSCHAG00000009749)	DUSP10 (ENSCHAG00000009766)	taf1a (ENSCHAG00000009794)	MIA3 (ENSCHAG00000009816)	aida (ENSCHAG00000010167)	brox (ENSCHAG00000010203)	ENSCHAG00000010280	ENSCHAG00000010300	disp1 (ENSCHAG00000010305)	TLR5 (ENSCHAG00000010311)	TLR5 (ENSCHAG00000010320)	ENSCHAG00000010384 ##22	rnf8 (ENSCHAG00000010396)	TCTE1 (ENSCHAG00000010431)	tmem151ba (ENSCHAG00000010491)	nfkbie (ENSCHAG00000010502)	slc35b2 (ENSCHAG00000010515)	INF2 (ENSCHAG00000010546)	ENSCHAG00000011030	ENSCHAG00000011046	rmdn3 (ENSCHAG00000011073)	rad51 (ENSCHAG00000011104)	ak7a (ENSCHAG00000011146)	galca (ENSCHAG00000011325)	actc1a (ENSCHAG00000011374)	ENSCHAG00000011395	SCG5 (ENSCHAG00000011427)
Denticle herring	MODERN SPECIES	5	ENSDCDG00000028298	ENSDCDG00000028299	REV3L (ENSDCDG00000028303)	mfsd4b (ENSDCDG00000028307)	slc16a10 (ENSDCDG00000028308)	rpf2 (ENSDCDG00000028309)	gopc (ENSDCDG00000028313)	dcbld1 (ENSDCDG00000028340)	vgll2a (ENSDCDG00000028341)	rfx6 (ENSDCDG00000028342)	tdrd15 (ENSDCDG00000028345)	ENSDCDG00000028346	disp1 (ENSDCDG00000028347)	TLR5 (ENSDCDG00000028348)	ENSDCDG00000028349	ENSDCDG00000028350 ##22	rnf8 (ENSDCDG00000028351)	TCTE1 (ENSDCDG00000028353)	tmem151ba (ENSDCDG00000028354)	ENSDCDG00000028355	ENSDCDG00000028356	ENSDCDG00000028357	ENSDCDG00000028358	nfkbie (ENSDCDG00000028360)	slc35b2 (ENSDCDG00000028363)	INF2 (ENSDCDG00000028455)	ENSDCDG00000028458	ENSDCDG00000028461	ENSDCDG00000028468	ENSDCDG00000028476	ENSDCDG00000028479
Otophysi	ANCESTRAL SPECIES	16	ENSGT00950000183044.a.b	ENSGT00390000004681.b	ENSGT00390000003161	ENSGT00390000011521	ENSGT00940000153456.a	ENSGT00940000153837.a.a	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00940000167697	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927	ENSGT01020000230401.a.a.a	ENSGT00730000111019.e.b	ENSGT00390000007015.x	ENSGT00390000010770	ENSGT00940000156087.a.b	ENSGT00390000016577.b.b	ENSGT00530000063737.l.a	ENSGT00940000176161	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a
Characiphysae	ANCESTRAL SPECIES	31	ENSGT00950000183044.a.b	ENSGT00390000004681.b.c	ENSGT00390000003161	ENSGT00390000011521	ENSGT00940000153456.a	ENSGT00940000153837.a.a	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a	ENSGT00390000016465	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00390000007341.b ##22	ENSGT00830000128368.a
Characiphysae_b	ANCESTRAL SPECIES	74	ENSGT00950000183044.a.b	ENSGT00390000004681.b.c	ENSGT00390000003161	ENSGT00390000011521	ENSGT00940000153456.a	ENSGT00940000153837.a.a	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a	ENSGT00390000016465	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000162464	ENSGT00390000007341.b ##22	ENSGT00830000128368.a
Characoidei	ANCESTRAL SPECIES																	ENSGT00390000007341.b ##22
Red-bellied piranha	MODERN SPECIES	1409																ENSPNAG00000007229 ##22
Electric eel	MODERN SPECIES	4	ENSEEEG00000020924	GFUS (ENSEEEG00000020893)	ARHGAP39 (ENSEEEG00000020876)	C8orf82 (ENSEEEG00000020872)	naprt (ENSEEEG00000020870)	RHPN1 (ENSEEEG00000020866)	hlx1 (ENSEEEG00000020865)	DUSP10 (ENSEEEG00000020864)	taf1a (ENSEEEG00000020862)	ENSEEEG00000020855	aida (ENSEEEG00000020843)	brox (ENSEEEG00000020836)	ENSEEEG00000020835	disp1 (ENSEEEG00000020822)	TLR5 (ENSEEEG00000020818)	ENSEEEG00000020815 ##22	rsph3 (ENSEEEG00000020814)	ezrb (ENSEEEG00000020697)	enpp1 (ENSEEEG00000019941)	gtf3c2 (ENSEEEG00000019910)	slc30a2 (ENSEEEG00000019909)	ENSEEEG00000019907	mpv17 (ENSEEEG00000019906)	uts1 (ENSEEEG00000019904)	ENSEEEG00000019902	dnajc5ga (ENSEEEG00000019900)	cad (ENSEEEG00000019311)	ift172 (ENSEEEG00000019225)	ENSEEEG00000019218	rcan2 (ENSEEEG00000019217)	cyp39a1 (ENSEEEG00000019215)
Cyprinoidei	ANCESTRAL SPECIES	57	ENSGT00390000011521	ENSGT00940000153456.a	ENSGT00940000153837.a.a	ENSGT00950000183093.C	ENSGT00950000182767.a.e	ENSGT00390000016465	ENSGT00940000157671	ENSGT00390000011405	ENSGT00950000182767.a.f	ENSGT00940000167697	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000157407	ENSGT00940000170875	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00400000022349	ENSGT00940000159341	ENSGT00390000013762.b.a.a.a	ENSGT00940000159120.f	ENSGT00940000157927	ENSGT01020000230401.a.a.a	ENSGT00730000111019.e.b	ENSGT00390000007015.x	ENSGT00390000010770	ENSGT00940000156087.a.b	ENSGT00390000016577.b.b	ENSGT00530000063737.l.a	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260
Cyprininae	ANCESTRAL SPECIES	912												ENSGT00600000084860.C	ENSGT00940000157407.a	ENSGT00940000170875.a	ENSGT00830000128368.a.p	ENSGT00390000007341.b ##22	ENSGT00400000022349.a
Cyprininae_a	ANCESTRAL SPECIES	289									ENSGT00950000182767.a.f	ENSGT00390000016465.sb.b	ENSGT00390000006681.f	ENSGT00600000084860.C	ENSGT00940000157407.a	ENSGT00940000170875.a	ENSGT00830000128368.a.p	ENSGT00390000007341.b ##22	ENSGT00400000022349.a	ENSGT00390000013762.b.a.a.a.d	ENSGT00940000159120.f.a	ENSGT01020000230401.a.a.a.h	ENSGT00730000111019.e.b.c	ENSGT00390000007015.x.a.b	ENSGT00390000010770.h	ENSGT00940000156087.a.b.b	ENSGT00390000016577.b.b.e	ENSGT00530000063737.l.a.b	ENSGT00390000003866.a.b.b.b	ENSGT01030000234532.A.a.b.a.b	ENSGT00910000144260.a	ENSGT00390000005052.z.a.a.a	ENSGT00390000005052.z.b
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	34	eef1db (ENSCCRG00000063093)	pycr3 (ENSCCRG00000073457)	gfus.2 (ENSCCRG00000005640)	ENSCCRG00000082065	ENSCCRG00000055371	naprt (ENSCCRG00000043181)	ENSCCRG00000015417	DUSP10 (ENSCCRG00000054337)	taf1a (ENSCCRG00000005524)	ENSCCRG00000005467	aida (ENSCCRG00000005252)	brox (ENSCCRG00000005244)	ENSCCRG00000073885	disp1 (ENSCCRG00000018200)	ENSCCRG00000055125	ENSCCRG00000062054 ##22	rnf8 (ENSCCRG00000018213)	TCTE1 (ENSCCRG00000027955)	tmem151ba (ENSCCRG00000027949)	nfkbie (ENSCCRG00000071447)	slc35b2 (ENSCCRG00000060107)	hsp90ab1 (ENSCCRG00000062663)	rbm25b (ENSCCRG00000073910)	eif2s1b (ENSCCRG00000034531)	atp6v1d (ENSCCRG00000063281)	pals1b (ENSCCRG00000034268)	ENSCCRG00000003258	gphnb (ENSCCRG00000078197)	FUT8 (ENSCCRG00000004167)	tmem121ab (ENSCCRG00000070188)	SLC24A4 (ENSCCRG00000078632)
Common carp reference	MODERN SPECIES	28	eef1db (ENSCCRG00000028541)	gfus.2 (ENSCCRG00000065131)	gfus.2 (ENSCCRG00000057308)	gfus.1 (ENSCCRG00000053117)	ENSCCRG00000068337	ENSCCRG00000043175	ENSCCRG00000005573	naprt (ENSCCRG00000005559)	hlx1 (ENSCCRG00000005544)	ENSCCRG00000005515	ENSCCRG00000035032	aida (ENSCCRG00000064444)	brox (ENSCCRG00000013248)	disp1 (ENSCCRG00000005185)	tlr5b (ENSCCRG00000075123)	ENSCCRG00000062807 ##22	rnf8 (ENSCCRG00000017963)	tmem151ba (ENSCCRG00000012267)	nfkbie (ENSCCRG00000012272)	slc35b2 (ENSCCRG00000040061)	hsp90ab1 (ENSCCRG00000081064)	rbm25b (ENSCCRG00000034537)	eif2s1b (ENSCCRG00000034327)	atp6v1d (ENSCCRG00000053085)	ENSCCRG00000069229	gphnb (ENSCCRG00000036584)	FUT8 (ENSCCRG00000003994)	ENSCCRG00000059381	tmem121ab (ENSCCRG00000076345)	SLC24A4 (ENSCCRG00000060912)	cpsf2 (ENSCCRG00000010971)
Golden-line barbel	MODERN SPECIES	672	ENSSGRG00000042992	gfus.2 (ENSSGRG00000042993)	ENSSGRG00000043005	si:ch1073-287p18.1 (ENSSGRG00000043296)	naprt (ENSSGRG00000043297)	hlx1 (ENSSGRG00000043298)	DUSP10 (ENSSGRG00000043300)	taf1a (ENSSGRG00000043302)	ENSSGRG00000043305	ENSSGRG00000043307	brox (ENSSGRG00000043309)	ENSSGRG00000043332	disp1 (ENSSGRG00000043333)	tlr5b (ENSSGRG00000043335)	ENSSGRG00000043336	ENSSGRG00000043337 ##22	ENSSGRG00000043338	tmem151ba (ENSSGRG00000043340)	nfkbie (ENSSGRG00000043341)	slc35b2 (ENSSGRG00000043343)	hsp90ab1 (ENSSGRG00000043425)	ENSSGRG00000047386	rbm25b (ENSSGRG00000047387)	eif2s1b (ENSSGRG00000047388)	atp6v1d (ENSSGRG00000047392)	pals1b (ENSSGRG00000047406)	gphnb (ENSSGRG00000047458)	FUT8 (ENSSGRG00000049103)	tmem121ab (ENSSGRG00000049180)	SLC24A4 (ENSSGRG00000049181)	cpsf2 (ENSSGRG00000049194)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	12	gfus.2 (ENSCARG00000038245)	gfus.1 (ENSCARG00000038297)	ARHGAP39 (ENSCARG00000038967)	C8orf82 (ENSCARG00000039003)	ENSCARG00000039020	RHPN1 (ENSCARG00000039040)	DUSP10 (ENSCARG00000039317)	taf1a (ENSCARG00000039334)	ENSCARG00000039404	aida (ENSCARG00000039492)	brox (ENSCARG00000039523)	ENSCARG00000039544	ENSCARG00000039557	disp1 (ENSCARG00000039570)	ENSCARG00000039605	ENSCARG00000039615 ##22	rnf8 (ENSCARG00000039625)	TCTE1 (ENSCARG00000039660)	ENSCARG00000039720	tmem151ba (ENSCARG00000039731)	ENSCARG00000039752	nfkbie (ENSCARG00000039770)	slc35b2 (ENSCARG00000039797)	hsp90ab1 (ENSCARG00000039930)	rbm25b (ENSCARG00000043685)	eif2s1b (ENSCARG00000043978)	atp6v1d (ENSCARG00000044040)	pals1b (ENSCARG00000044595)	ENSCARG00000044780	gphnb (ENSCARG00000044884)	FUT8 (ENSCARG00000046724)
Goldfish	MODERN SPECIES	56	ppp2r5cb (ENSCARG00000035541)	hsp90aa1.1 (ENSCARG00000039035)	ENSCARG00000040174	WDR20 (ENSCARG00000040195)	mgat2 (ENSCARG00000040204) #22	hlx1 (ENSCARG00000040216)	DUSP10 (ENSCARG00000040235)	ENSCARG00000040255	ENSCARG00000040452	aida (ENSCARG00000040469)	brox (ENSCARG00000040629)	disp1 (ENSCARG00000040703)	ENSCARG00000040722	ENSCARG00000040739	ENSCARG00000040747	ENSCARG00000040754 ##22	rnf8 (ENSCARG00000040760)	tmem151ba (ENSCARG00000040779)	nfkbie (ENSCARG00000040793)	slc35b2 (ENSCARG00000040802)	rbm25b (ENSCARG00000040869)	hsp90ab1 (ENSCARG00000041079)	eif2s1b (ENSCARG00000041591)	atp6v1d (ENSCARG00000041622)	pals1b (ENSCARG00000041683)	ENSCARG00000041755	gphnb (ENSCARG00000041829)	ENSCARG00000042306	ENSCARG00000042341	ENSCARG00000042360	ENSCARG00000042979
Zebrafish	MODERN SPECIES	12	naprt (ENSDARG00000027930)	RHPN1 (ENSDARG00000052454)	hlx1 (ENSDARG00000009134)	DUSP10 (ENSDARG00000052465)	taf1a (ENSDARG00000052471)	ENSDARG00000008184	aida (ENSDARG00000014532)	brox (ENSDARG00000013659)	ENSDARG00000093457	ENSDARG00000095420	ENSDARG00000091595	disp1 (ENSDARG00000044417)	ENSDARG00000044415	tlr5b (ENSDARG00000052322)	ENSDARG00000092470	ENSDARG00000091598 ##22	rnf8 (ENSDARG00000044949)	TCTE1 (ENSDARG00000077387)	tmem151ba (ENSDARG00000060034)	nfkbie (ENSDARG00000068367)	slc35b2 (ENSDARG00000007886)	hsp90ab1 (ENSDARG00000029150)	rbm25b (ENSDARG00000006395)	eif2s1b (ENSDARG00000052178)	atp6v1d (ENSDARG00000011175)	ENSDARG00000092181	pals1b (ENSDARG00000004721)	gphnb (ENSDARG00000100851)	FUT8 (ENSDARG00000088117)	tmem121ab (ENSDARG00000090499)	SLC24A4 (ENSDARG00000067509)
Euteleosteomorpha	ANCESTRAL SPECIES	8													ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00390000016736.b	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000161228	ENSGT00940000161541	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00960000189653
Protacanthopterygii	ANCESTRAL SPECIES	53	ENSGT00940000153634.b.b	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157058.k	ENSGT00390000015553.a.b.n	ENSGT00940000155691.c.b	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157	ENSGT00410000025918	ENSGT00390000010376	ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00940000171827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376	ENSGT00390000018505
Salmoninae	ANCESTRAL SPECIES	238	ENSGT00940000153433.B.a.a.c	ENSGT00410000025698.a.g	ENSGT00940000157058.k.m	ENSGT00940000158752.h.l.a	ENSGT00390000015553.a.b.n.b	ENSGT00940000155691.c.b.a	ENSGT00940000167811.h.b	ENSGT00440000033849.h	ENSGT00940000156157.o	ENSGT00410000025918	ENSGT00390000010376.c	ENSGT00940000157407.c	ENSGT00940000162464.m.a	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b.a	ENSGT00390000007341.b ##22	ENSGT00390000006681.k	ENSGT00390000016736.b	ENSGT00600000084860.C	ENSGT01000000218574.a	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000154603.B.k	ENSGT00940000156212.o	ENSGT00940000157566.k	ENSGT01100000263524.B.a.b.k	ENSGT00940000156827.xc	ENSGT00960000189653	ENSGT00940000171827	ENSGT00950000182834.A.a.b.c.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT00940000153433.B.a.a.c	ENSGT00410000025698.a.g	ENSGT00940000157058.k.m	ENSGT00940000158752.h.l.a	ENSGT00390000015553.a.b.n.b	ENSGT00940000155691.c.b.a	ENSGT00940000167811.h.b	ENSGT00440000033849.h	ENSGT00940000156157.o	ENSGT00410000025918	ENSGT00390000010376.c	ENSGT00940000157407.c	ENSGT00940000162464.m.a	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b.a	ENSGT00390000007341.b.e ##22	ENSGT00390000006681.k	ENSGT00390000016736.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541.l	ENSGT00940000154603.B.k	ENSGT00940000156212.o	ENSGT00940000157566.k	ENSGT01100000263524.B.a.b.k	ENSGT00940000156827.xc	ENSGT00940000171827	ENSGT00950000182834.A.a.b.c.b	ENSGT00940000166260.b	ENSGT00390000000417.a.a.b.a.b.c	ENSGT00940000157376.`b.b.a.b
Salmo	ANCESTRAL SPECIES	26	ENSGT00940000153433.B.a.a.c	ENSGT00410000025698.a.g	ENSGT00940000157058.k.m	ENSGT00940000158752.h.l.a	ENSGT00390000015553.a.b.n.b	ENSGT00940000155691.c.b.a	ENSGT00940000167811.h.b	ENSGT00440000033849.h	ENSGT00940000156157.o	ENSGT00410000025918	ENSGT00390000010376.c	ENSGT00940000157407.c	ENSGT00940000162464.m.a	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b.a	ENSGT00390000007341.b.e ##22	ENSGT00390000006681.k	ENSGT00390000016736.b	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541.l	ENSGT00940000154603.B.k	ENSGT00940000156212.o	ENSGT00940000157566.k	ENSGT01100000263524.B.a.b.k	ENSGT00940000156827.xc	ENSGT00940000171827	ENSGT00950000182834.A.a.b.c.b	ENSGT00940000166260.b	ENSGT00390000000417.a.a.b.a.b.c	ENSGT00940000157376.ab
River trout	MODERN SPECIES	28	esrrgb (ENSSTUG00000033338)	si:ch73-21k16.4 (ENSSTUG00000033345)	CEP170B (ENSSTUG00000033353)	AKT1 (ENSSTUG00000033404)	ADSS1 (ENSSTUG00000033575)	INF2 (ENSSTUG00000034128)	ENSSTUG00000034371	gchfr (ENSSTUG00000034376)	rad51 (ENSSTUG00000034381)	ENSSTUG00000034450	knstrn (ENSSTUG00000034499)	disp1 (ENSSTUG00000034532)	TLR5 (ENSSTUG00000034557)	ENSSTUG00000034571	ENSSTUG00000034587	ENSSTUG00000037369 ##22	brox (ENSSTUG00000037373)	ENSSTUG00000037391	mep1a.1 (ENSSTUG00000037401)	ENSSTUG00000037425	mep1a.2 (ENSSTUG00000037456)	ENSSTUG00000037555	ENSSTUG00000037571	tnfrsf21 (ENSSTUG00000037591)	cd2ap (ENSSTUG00000037602)	opn5 (ENSSTUG00000037636)	ptchd4 (ENSSTUG00000037665)	CNIH3 (ENSSTUG00000037669)	ENSSTUG00000037685	lbr (ENSSTUG00000037700)	enah (ENSSTUG00000037803)
Atlantic salmon	MODERN SPECIES	6	esrrgb (ENSSSAG00000114784)	si:ch73-21k16.4 (ENSSSAG00000053678)	ENSSSAG00000053652	ENSSSAG00000096156	pura1 (ENSSSAG00000045538)	ENSSSAG00000083851	ENSSSAG00000111447	gchfr (ENSSSAG00000045456)	rad51 (ENSSSAG00000045336)	ENSSSAG00000045279	ENSSSAG00000106333	ENSSSAG00000109574	disp1 (ENSSSAG00000045234)	ENSSSAG00000045202	ENSSSAG00000095040	ENSSSAG00000101300 ##22	brox (ENSSSAG00000045122)	ENSSSAG00000086800	ENSSSAG00000111597	ENSSSAG00000045015	ENSSSAG00000044869	mep1a.2 (ENSSSAG00000044888)	ENSSSAG00000086462	ENSSSAG00000110472	ENSSSAG00000061673	ENSSSAG00000102103	ENSSSAG00000079144	ENSSSAG00000044853	tnfrsf21 (ENSSSAG00000044843)	cd2ap (ENSSSAG00000044834)	opn5 (ENSSSAG00000044795)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT00390000017627.a.a.a.d	ENSGT00940000153433.B.a.a.c	ENSGT00410000025698.a.g	ENSGT00940000157058.k.m	ENSGT00940000158752.h.l.a	ENSGT00390000015553.a.b.n.b	ENSGT00940000155691.c.b.a	ENSGT00940000167811.h.b	ENSGT00940000156157.o	ENSGT00410000025918	ENSGT00980000202865	ENSGT00940000157407.c	ENSGT00940000162464.m.a	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b.a	ENSGT00390000007341.b.e ##22	ENSGT00390000006681.k	ENSGT00390000016736.b.c	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541.l	ENSGT00940000154603.B.k	ENSGT00940000156212.o	ENSGT00940000157566.k	ENSGT01100000263524.B.a.b.k	ENSGT00940000156827.xc	ENSGT00950000182834.A.a.b.c.b	ENSGT00940000166260.b	ENSGT00390000000417.a.a.b.a.b.c	ENSGT00940000157376.`b.b.a.b	ENSGT00390000018505.n
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000063938	ENSOMYG00000019918	ENSOMYG00000019797	ENSOMYG00000056116	ENSOMYG00000056787	ENSOMYG00000019778	ENSOMYG00000047889	ENSOMYG00000019750	ENSOMYG00000019731	disp1 (ENSOMYG00000019718)	ENSOMYG00000019711	ENSOMYG00000069641	ENSOMYG00000053436	ENSOMYG00000019706	ENSOMYG00000019701	ENSOMYG00000019696 ##22	ENSOMYG00000019640	ENSOMYG00000019596	mep1a.1 (ENSOMYG00000063269)	ENSOMYG00000019559	mep1a.2 (ENSOMYG00000019517)	ENSOMYG00000019505	ENSOMYG00000019489	tnfrsf21 (ENSOMYG00000019480)	cd2ap (ENSOMYG00000019453)	opn5 (ENSOMYG00000019410)	ptchd4 (ENSOMYG00000019399)	ENSOMYG00000061761	ENSOMYG00000019393	ENSOMYG00000062071	CNIH3 (ENSOMYG00000070387)
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00390000017627.a.a.a.d	ENSGT00940000153433.B.a.a.c	ENSGT00410000025698.a.g	ENSGT00940000157058.k.m	ENSGT00940000158752.h.l.a	ENSGT00390000015553.a.b.n.b	ENSGT00940000155691.c.b.a	ENSGT00940000167811.h.b	ENSGT00940000156157.o	ENSGT00410000025918	ENSGT00980000202865	ENSGT00940000157407.c	ENSGT00940000162464.m.a	ENSGT00830000128368.a.m.a	ENSGT00830000128368.a.m.b.a	ENSGT00390000007341.b.e ##22	ENSGT00390000006681.k	ENSGT00390000016736.b.c	ENSGT01000000218574.a	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541.l	ENSGT00940000154603.B.k	ENSGT00940000156212.o	ENSGT00940000157566.k	ENSGT01100000263524.B.a.b.k	ENSGT00940000156827.xc	ENSGT00950000182834.A.a.b.c.b	ENSGT00940000166260.b	ENSGT00390000000417.a.a.b.a.b.c	ENSGT00940000157376.`b.b.a.b
Coho salmon	MODERN SPECIES	3	esrrgb (ENSOKIG00005031396)	si:ch73-21k16.4 (ENSOKIG00005031377)	CEP170B (ENSOKIG00005031287)	AKT1 (ENSOKIG00005030617)	ADSS1 (ENSOKIG00005029618)	ENSOKIG00005029570	INF2 (ENSOKIG00005029282)	ENSOKIG00005029223	RAD51 (ENSOKIG00005029092)	ENSOKIG00005029072	ENSOKIG00005029056	disp1 (ENSOKIG00005029049)	TLR5 (ENSOKIG00005029024)	ENSOKIG00005029009	ENSOKIG00005029000	ENSOKIG00005028992 ##22	brox (ENSOKIG00005028930)	ENSOKIG00005028892	ENSOKIG00005028870	mep1a.1 (ENSOKIG00005028832)	ENSOKIG00005028819	mep1a.2 (ENSOKIG00005028708)	ENSOKIG00005028686	ENSOKIG00005028654	tnfrsf21 (ENSOKIG00005028633)	cd2ap (ENSOKIG00005028607)	opn5 (ENSOKIG00005028580)	ptchd4 (ENSOKIG00005028574)	CNIH3 (ENSOKIG00005028558)	ENSOKIG00005028547	lbr (ENSOKIG00005028443)
Chinook salmon	MODERN SPECIES	29	esrrgb (ENSOTSG00005028595)	si:ch73-21k16.4 (ENSOTSG00005028594)	CEP170B (ENSOTSG00005028593)	AKT1 (ENSOTSG00005028362)	ADSS1 (ENSOTSG00005028266)	INF2 (ENSOTSG00005028245)	ENSOTSG00005028244	rad51 (ENSOTSG00005028243)	ENSOTSG00005028242	knstrn (ENSOTSG00005028241)	ENSOTSG00005028240	disp1 (ENSOTSG00005028238)	TLR5 (ENSOTSG00005028237)	ENSOTSG00005028236	ENSOTSG00005028235	ENSOTSG00005028233 ##22	brox (ENSOTSG00005028223)	ENSOTSG00005028221	ENSOTSG00005028220	mep1a.1 (ENSOTSG00005028218)	ENSOTSG00005028147	mep1a.2 (ENSOTSG00005028145)	ENSOTSG00005028144	ENSOTSG00005028143	tnfrsf21 (ENSOTSG00005028142)	cd2ap (ENSOTSG00005028141)	opn5 (ENSOTSG00005028140)	ptchd4 (ENSOTSG00005028139)	ENSOTSG00005028138	ENSOTSG00005028137	ENSOTSG00005028136
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00390000017627.a.a.a.c	ENSGT00940000153433.B.a.a.d	ENSGT00410000025698.a.h	ENSGT00940000157058.k.n	ENSGT00940000157058.l.w	ENSGT00940000158752.h.l.b	ENSGT00390000015553.a.b.n.a	ENSGT00940000155691.c.b.b	ENSGT00940000167811.h.a	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157.p	ENSGT00390000010376.d	ENSGT00940000157407.d	ENSGT00940000162464.m.b	ENSGT00830000128368.a.m.b.b	ENSGT00390000007341.b.f ##22	ENSGT00390000006681.l	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00940000161541.k	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000156212.p	ENSGT00940000157566.l	ENSGT01100000263524.B.a.b.l	ENSGT00940000156827.yc	ENSGT00950000182834.A.a.b.c.a	ENSGT00940000166260.a	ENSGT00390000000417.a.a.b.a.b.d	ENSGT00940000157376.`b.a	ENSGT00390000018505.o
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000153634.b.b.f	ENSGT00390000017627.a.a.a.c	ENSGT00940000153433.B.a.a.d	ENSGT00410000025698.a.h	ENSGT00940000157058.k.n	ENSGT00940000158752.h.l.b	ENSGT00390000015553.a.b.n.a	ENSGT00940000155691.c.b.b	ENSGT00940000167811.h.a	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157.p	ENSGT00390000010376.d	ENSGT00940000157407.d	ENSGT00940000162464.m.b	ENSGT00830000128368.a.m.b.b	ENSGT00390000007341.b.f ##22	ENSGT00390000006681.l	ENSGT00940000170226	ENSGT00600000084860.C	ENSGT00940000161541.k	ENSGT00940000154603.B.l.c	ENSGT00940000156212.p	ENSGT00940000157566.l	ENSGT01100000263524.B.a.b.l	ENSGT00940000156827.yc	ENSGT00950000182834.A.a.b.c.a	ENSGT00940000166260.a	ENSGT00390000000417.a.a.b.a.b.d	ENSGT00940000157376.`b.a	ENSGT00390000018505.o	ENSGT00390000002210.c.b.h.b
River trout	MODERN SPECIES		ENSSTUG00000002058	wdr26b (ENSSTUG00000002148)	fez2b (ENSSTUG00000002630)	esrrgb (ENSSTUG00000002663)	si:ch73-21k16.4 (ENSSTUG00000002689)	CEP170B (ENSSTUG00000002788)	AKT1 (ENSSTUG00000003007)	ADSS1 (ENSSTUG00000005250)	INF2 (ENSSTUG00000006063)	ENSSTUG00000006216	rmdn3 (ENSSTUG00000006223)	rad51 (ENSSTUG00000006512)	knstrn (ENSSTUG00000006555)	disp1 (ENSSTUG00000006577)	ENSSTUG00000006888	ENSSTUG00000006903 ##22	brox (ENSSTUG00000006914)	ENSSTUG00000007294	ENSSTUG00000007307	ENSSTUG00000007311	ENSSTUG00000007329	ENSSTUG00000007337	ENSSTUG00000007347	tnfrsf21 (ENSSTUG00000007373)	cd2ap (ENSSTUG00000007384)	opn5 (ENSSTUG00000007447)	ptchd4 (ENSSTUG00000007458)	CNIH3 (ENSSTUG00000007467)	ENSSTUG00000007471	lbr (ENSSTUG00000007480)	enah (ENSSTUG00000007605)
Atlantic salmon	MODERN SPECIES	25	wdr26b (ENSSSAG00000007202)	fez2b (ENSSSAG00000007172)	esrrgb (ENSSSAG00000053685)	ENSSSAG00000084142	si:ch73-21k16.4 (ENSSSAG00000088182)	ENSSSAG00000007116	ENSSSAG00000104497	adssl1 (ENSSSAG00000003104)	ENSSSAG00000002998	ENSSSAG00000082068	rmdn3 (ENSSSAG00000002957)	ENSSSAG00000002938	ENSSSAG00000002923	ENSSSAG00000002900	ENSSSAG00000002713	ENSSSAG00000099058 ##22	brox (ENSSSAG00000002343)	ENSSSAG00000002226	ENSSSAG00000002219	ENSSSAG00000002196	ENSSSAG00000104786	ENSSSAG00000002170	tnfrsf21 (ENSSSAG00000088230)	cd2ap (ENSSSAG00000076921)	opn5 (ENSSSAG00000076898)	ptchd4 (ENSSSAG00000076896)	ENSSSAG00000076894	ENSSSAG00000076890	ENSSSAG00000076885	lbr (ENSSSAG00000076862)	srp9 (ENSSSAG00000076847)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00390000017627.a.a.a.c	ENSGT00940000153433.B.a.a.d	ENSGT00410000025698.a.h	ENSGT00940000157058.k.n	ENSGT00940000157058.l.w	ENSGT00940000158752.h.l.b	ENSGT00390000015553.a.b.n.a	ENSGT00940000155691.c.b.b	ENSGT00940000167811.h.a	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157.p	ENSGT00390000010376.d	ENSGT00940000157407.d	ENSGT00940000162464.m.b	ENSGT00830000128368.a.m.b.b	ENSGT00390000007341.b.f ##22	ENSGT00390000006681.l	ENSGT00390000016736.b.d	ENSGT00600000084860.C	ENSGT00940000161541.k	ENSGT00940000154603.B.l.e	ENSGT00940000154603.B.l.f	ENSGT00940000156212.p	ENSGT00940000157566.l	ENSGT01100000263524.B.a.b.l	ENSGT00940000156827.yc	ENSGT00950000182834.A.a.b.c.a	ENSGT00940000166260.a	ENSGT00390000000417.a.a.b.a.b.d	ENSGT00940000157376.`b.a	ENSGT00390000018505.o
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00940000153634.b.b.f	ENSGT00390000017627.a.a.a.c	ENSGT00940000153433.B.a.a.d	ENSGT00410000025698.a.h	ENSGT00940000157058.k.n	ENSGT00940000158752.h.l.b	ENSGT00390000015553.a.b.n.a	ENSGT00940000155691.c.b.b	ENSGT00940000167811.h.a	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157.p	ENSGT00390000010376.d	ENSGT00940000157407.d	ENSGT00940000162464.m.b	ENSGT00830000128368.a.m.b.b	ENSGT00390000007341.b.f ##22	ENSGT00390000006681.l	ENSGT00390000016736.b.d	ENSGT00600000084860.C	ENSGT00940000161541.k	ENSGT00940000154603.B.l.e	ENSGT00940000154603.B.l.f	ENSGT00940000156212.p	ENSGT00940000157566.l	ENSGT01100000263524.B.a.b.l	ENSGT00940000156827.yc	ENSGT00950000182834.A.a.b.c.a	ENSGT00940000166260.a	ENSGT00390000000417.a.a.b.a.b.d	ENSGT00940000157376.`b.a	ENSGT00390000018505.o
Coho salmon	MODERN SPECIES	13	fez2b (ENSOKIG00005010125)	esrrgb (ENSOKIG00005010097)	si:ch73-21k16.4 (ENSOKIG00005010090)	CEP170B (ENSOKIG00005010026)	AKT1 (ENSOKIG00005008096)	ADSS1 (ENSOKIG00005007036)	INF2 (ENSOKIG00005006860)	ENSOKIG00005006843	rmdn3 (ENSOKIG00005006812)	rad51 (ENSOKIG00005006788)	ENSOKIG00005006768	disp1 (ENSOKIG00005006757)	ENSOKIG00005006731	ENSOKIG00005006708	ENSOKIG00005006703	ENSOKIG00005006685 ##22	BROX (ENSOKIG00005006316)	ENSOKIG00005006272	ENSOKIG00005006266	ENSOKIG00005006256	ENSOKIG00005006229	ENSOKIG00005006213	ENSOKIG00005006195	ENSOKIG00005006176	tnfrsf21 (ENSOKIG00005006151)	cd2ap (ENSOKIG00005006106)	opn5 (ENSOKIG00005049656)	ptchd4 (ENSOKIG00005049653)	CNIH3 (ENSOKIG00005049648)	ENSOKIG00005049642	lbr (ENSOKIG00005049627)
Acanthomorphata	ANCESTRAL SPECIES	176													ENSGT00940000157407	ENSGT00940000162464	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000161228	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00960000189653	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000161228	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00390000000417.a.a.b.a.b
Pinecone sodierfish	MODERN SPECIES	16	ENSMMDG00005016180	mcm3 (ENSMMDG00005016110)	paqr8 (ENSMMDG00005016096)	znf395b (ENSMMDG00005016094)	pnocb (ENSMMDG00005016093)	si:ch211-63o20.7 (ENSMMDG00005016091)	elp3 (ENSMMDG00005015987)	KIF13B (ENSMMDG00005011280)	HMBOX1 (ENSMMDG00005011173)	disp1 (ENSMMDG00005011170)	TLR5 (ENSMMDG00005010650)	ENSMMDG00005010638	ENSMMDG00005010637	ENSMMDG00005010636	ENSMMDG00005010632	ENSMMDG00005010631 ##22	brox (ENSMMDG00005010618)	ENSMMDG00005010616	mep1a.1 (ENSMMDG00005010614)	mep1a.2 (ENSMMDG00005010609)	ENSMMDG00005010602	TAAR1 (ENSMMDG00005010597)	TAAR1 (ENSMMDG00005010596)	TAAR1 (ENSMMDG00005010595)	TAAR1 (ENSMMDG00005010590)	TAAR1 (ENSMMDG00005010589)	TAAR1 (ENSMMDG00005010588)	ENSMMDG00005010586	TAAR1 (ENSMMDG00005010585)	ENSMMDG00005010584	TAAR1 (ENSMMDG00005010583)
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000161228	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00390000000417.a.a.b.a.b
Tiger tail seahorse	MODERN SPECIES	465	myb (ENSHCOG00000007560)	hbs1l (ENSHCOG00000007581)	aldh8a1 (ENSHCOG00000007598)	SGK1 (ENSHCOG00000007633)	CNIH3 (ENSHCOG00000007653)	ENSHCOG00000007667	ptchd4 (ENSHCOG00000007675)	opn5 (ENSHCOG00000007694)	cd2ap (ENSHCOG00000007770)	tnfrsf21 (ENSHCOG00000007783)	ENSHCOG00000007789	disp1 (ENSHCOG00000007804)	TLR5 (ENSHCOG00000007892)	ENSHCOG00000007907	ENSHCOG00000007912	ENSHCOG00000007916 ##22	brox (ENSHCOG00000007926)	ENSHCOG00000007938	ENSHCOG00000007953
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00940000161228	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000162730	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917.b	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000162730	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917.b	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000162730	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k
Anabantaria	ANCESTRAL SPECIES	20	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827
Climbing perch	MODERN SPECIES	15	emilin1a (ENSATEG00000015971)	ENSATEG00000015923	stmn4 (ENSATEG00000027591)	mcm3 (ENSATEG00000015894)	paqr8 (ENSATEG00000015880)	znf395b (ENSATEG00000015873)	pnocb (ENSATEG00000027895)	si:ch211-63o20.7 (ENSATEG00000015842)	elp3 (ENSATEG00000015813)	ENSATEG00000015673	ENSATEG00000015579	disp1 (ENSATEG00000015562)	ENSATEG00000015550	ENSATEG00000029292	ENSATEG00000015523	ENSATEG00000015508 ##22	brox (ENSATEG00000015446)	ENSATEG00000025480	mep1a.1 (ENSATEG00000015405)	ENSATEG00000015365	ENSATEG00000015350	ENSATEG00000015239	ENSATEG00000015282	ENSATEG00000015331	ENSATEG00000027618	ENSATEG00000015204	ENSATEG00000015178	ENSATEG00000025915	ENSATEG00000025530	ENSATEG00000014848	ENSATEG00000015123
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000011653	stmn4 (ENSBSLG00000011614)	il17a/f3 (ENSBSLG00000011580)	mcm3 (ENSBSLG00000010778)	paqr8 (ENSBSLG00000010652)	znf395b (ENSBSLG00000010635)	pnocb (ENSBSLG00000010611)	si:ch211-63o20.7 (ENSBSLG00000010588)	elp3 (ENSBSLG00000009675)	KIF13B (ENSBSLG00000008070)	HMBOX1 (ENSBSLG00000007971)	disp1 (ENSBSLG00000007951)	TLR5 (ENSBSLG00000007927)	ENSBSLG00000007916	ENSBSLG00000007905	ENSBSLG00000007897 ##22	brox (ENSBSLG00000007828)	ENSBSLG00000007788	ENSBSLG00000007770	ENSBSLG00000007743	ENSBSLG00000007718	ENSBSLG00000007103	ENSBSLG00000007079	ENSBSLG00000007068	TAAR1 (ENSBSLG00000007062)	TAAR1 (ENSBSLG00000007053)	TAAR1 (ENSBSLG00000007045)	TAAR1 (ENSBSLG00000007031)	TAAR1 (ENSBSLG00000007018)	ENSBSLG00000006912	TAAR1 (ENSBSLG00000006897)
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000027512	stmn4 (ENSMAMG00000007012)	ENSMAMG00000007001	mcm3 (ENSMAMG00000006953)	paqr8 (ENSMAMG00000006934)	znf395b (ENSMAMG00000006924)	pnocb (ENSMAMG00000006903)	si:ch211-63o20.7 (ENSMAMG00000006887)	elp3 (ENSMAMG00000006874)	ENSMAMG00000006450	ENSMAMG00000006435	disp1 (ENSMAMG00000006373)	ENSMAMG00000006340	ENSMAMG00000024460	ENSMAMG00000006318	ENSMAMG00000006311 ##22	brox (ENSMAMG00000006277)	ENSMAMG00000006266	mep1a.1 (ENSMAMG00000006249)	mep1a.2 (ENSMAMG00000006169)	ENSMAMG00000006150	ADGRF1 (ENSMAMG00000006125)	ENSMAMG00000005940	ENSMAMG00000024950	ENSMAMG00000026014	ENSMAMG00000028679	ENSMAMG00000028186	ENSMAMG00000027122	ENSMAMG00000026689	ENSMAMG00000026440	ENSMAMG00000006017
Carangaria	ANCESTRAL SPECIES	18	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917.b	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000162730	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917.b	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000162730	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212
Seriola	ANCESTRAL SPECIES	4	ENSGT00490000043329.a.b.g.b	ENSGT00390000002693	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917.b	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000155731.a	ENSGT00950000182878.b.b	ENSGT00940000166260
Greater amberjack	MODERN SPECIES	10	tmem214 (ENSSDUG00000007836)	stmn4 (ENSSDUG00000007867)	il17a/f3 (ENSSDUG00000007890)	mcm3 (ENSSDUG00000007923)	paqr8 (ENSSDUG00000007985)	znf395b (ENSSDUG00000007991)	pnocb (ENSSDUG00000008014)	si:ch211-63o20.7 (ENSSDUG00000008025)	elp3 (ENSSDUG00000008034)	ENSSDUG00000008063	KIF13B (ENSSDUG00000008074)	HMBOX1 (ENSSDUG00000008155)	disp1 (ENSSDUG00000008180)	ENSSDUG00000008205	ENSSDUG00000008219	ENSSDUG00000008228 ##22	brox (ENSSDUG00000008235)	ENSSDUG00000008262	mep1a.1 (ENSSDUG00000008272)	mep1a.2 (ENSSDUG00000008298)	ENSSDUG00000008373	ENSSDUG00000008410	TAAR1 (ENSSDUG00000008418)	TAAR1 (ENSSDUG00000008432)	TAAR1 (ENSSDUG00000008438)	TAAR1 (ENSSDUG00000008459)	TAAR1 (ENSSDUG00000008461)	ENSSDUG00000008475	ENSSDUG00000008503	tnfrsf21 (ENSSDUG00000008519)	slc5a6a (ENSSDUG00000008535)
Yellowtail amberjack	MODERN SPECIES	2936	tmem214 (ENSSLDG00000020045)	stmn4 (ENSSLDG00000020032)	il17a/f3 (ENSSLDG00000020022)	mcm3 (ENSSLDG00000019971)	paqr8 (ENSSLDG00000019955)	znf395b (ENSSLDG00000019938)	pnocb (ENSSLDG00000019931)	si:ch211-63o20.7 (ENSSLDG00000019915)	elp3 (ENSSLDG00000019877)	ENSSLDG00000019861	KIF13B (ENSSLDG00000019810)	HMBOX1 (ENSSLDG00000019781)	disp1 (ENSSLDG00000019770)	ENSSLDG00000019760	ENSSLDG00000019662	ENSSLDG00000019646 ##22	brox (ENSSLDG00000019611)	ENSSLDG00000019596	mep1a.1 (ENSSLDG00000019576)	mep1a.2 (ENSSLDG00000019560)	ENSSLDG00000019553	ENSSLDG00000019514	ENSSLDG00000019502	TAAR1 (ENSSLDG00000019492)	TAAR1 (ENSSLDG00000019484)	ENSSLDG00000019469	ENSSLDG00000019430	tnfrsf21 (ENSSLDG00000019393)	slc5a6a (ENSSLDG00000019355)	rpl7l1 (ENSSLDG00000019337)	ENSSLDG00000019329
Pleuronectoidei	ANCESTRAL SPECIES	46	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c
Turbot	MODERN SPECIES	12	emilin1a (ENSSMAG00000003273)	stmn4 (ENSSMAG00000037598)	ENSSMAG00000003245	mcm3 (ENSSMAG00000003130)	paqr8 (ENSSMAG00000003117)	znf395b (ENSSMAG00000003089)	si:ch211-63o20.7 (ENSSMAG00000003079)	pnocb (ENSSMAG00000003062)	ELP3 (ENSSMAG00000002962)	ENSSMAG00000002902	ENSSMAG00000002835	disp1 (ENSSMAG00000002808)	tlr5-b (ENSSMAG00000002774)	ENSSMAG00000002760	ENSSMAG00000022622	ENSSMAG00000002755 ##22	brox (ENSSMAG00000002686)	ENSSMAG00000002672	mep1a.1 (ENSSMAG00000002640)	ENSSMAG00000002546	ENSSMAG00000002485	ENSSMAG00000002474	ENSSMAG00000025430	ENSSMAG00000024699	ENSSMAG00000022508	ENSSMAG00000029641	ENSSMAG00000028079	ENSSMAG00000030590	ENSSMAG00000036463	tnfrsf21 (ENSSMAG00000001007)	cd2ap (ENSSMAG00000001046)
Tongue sole	MODERN SPECIES	27															ENSCSEG00000011630	ENSCSEG00000011637 ##22	brox (ENSCSEG00000011640)	ENSCSEG00000011667	mep1a.1 (ENSCSEG00000011672)	mep1a.2 (ENSCSEG00000011679)	ENSCSEG00000011704	ENSCSEG00000011712	ENSCSEG00000011719	ENSCSEG00000011726	ENSCSEG00000011728	TAAR1 (ENSCSEG00000011738)	TAAR1 (ENSCSEG00000011746)	TAAR1 (ENSCSEG00000011756)	ENSCSEG00000011761	tnfrsf21 (ENSCSEG00000011778)	cd2ap (ENSCSEG00000011787)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212
Tetraodontidae	ANCESTRAL SPECIES	50	ENSGT00940000170226	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681
Fugu	DUPLICATION
Fugu	DUPLICATION
Fugu	MODERN SPECIES	7	stmn4 (ENSTRUG00000001455)	ENSTRUG00000020732	mcm3 (ENSTRUG00000001596)	paqr8 (ENSTRUG00000002225)	znf395b (ENSTRUG00000002307)	pnocb (ENSTRUG00000002503)	si:ch211-63o20.7 (ENSTRUG00000024378)	elp3 (ENSTRUG00000003113)	KIF13B (ENSTRUG00000003931)	HMBOX1 (ENSTRUG00000020592)	disp1 (ENSTRUG00000004602)	ENSTRUG00000004759	ENSTRUG00000029235	ENSTRUG00000004836	ENSTRUG00000029069	ENSTRUG00000004865 ##22	brox (ENSTRUG00000004871)	ENSTRUG00000029350	ENSTRUG00000026793	ENSTRUG00000033113	ENSTRUG00000019952	GJA10 (ENSTRUG00000005845)	BACH2 (ENSTRUG00000030234)	map3k7 (ENSTRUG00000005867)	epha7 (ENSTRUG00000033069)	ppil4 (ENSTRUG00000006670)	katna1 (ENSTRUG00000006850)	slc5a6a (ENSTRUG00000007105)	rpl7l1 (ENSTRUG00000024765)	ankrd6b (ENSTRUG00000029552)	ENSTRUG00000027112
Fugu	MODERN SPECIES	27																ENSTRUG00000028276 ##22	brox (ENSTRUG00000026473)	ENSTRUG00000027978	ENSTRUG00000028689
Fugu	MODERN SPECIES	60																ENSTRUG00000031493 ##22	brox (ENSTRUG00000032913)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212
Ballan wrasse	MODERN SPECIES	41	emilin1a (ENSLBEG00000022192)	stmn4 (ENSLBEG00000022173)	ENSLBEG00000022137	mcm3 (ENSLBEG00000022065)	paqr8 (ENSLBEG00000022027)	znf395b (ENSLBEG00000022000)	pnocb (ENSLBEG00000021986)	si:ch211-63o20.7 (ENSLBEG00000021971)	elp3 (ENSLBEG00000021916)	KIF13B (ENSLBEG00000021669)	HMBOX1 (ENSLBEG00000021557)	disp1 (ENSLBEG00000021514)	TLR5 (ENSLBEG00000021492)	ENSLBEG00000021480	ENSLBEG00000021467	ENSLBEG00000021457 ##22	brox (ENSLBEG00000021422)	ENSLBEG00000021402	mep1a.1 (ENSLBEG00000021377)	mep1a.2 (ENSLBEG00000021348)	ENSLBEG00000021309	ENSLBEG00000021260	ENSLBEG00000021220	ENSLBEG00000021191	ENSLBEG00000021181	BDKRB2 (ENSLBEG00000021174)	C14orf132 (ENSLBEG00000021163)	LRFN2 (ENSLBEG00000021150)	ENSLBEG00000021130	zgc:112001 (ENSLBEG00000021103)	olfcb1 (ENSLBEG00000021079)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000159678	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000159678	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566
Large yellow croaker	MODERN SPECIES	482	emilin1a (ENSLCRG00005020694)	stmn4 (ENSLCRG00005020695)	il17a/f3 (ENSLCRG00005020696)	mcm3 (ENSLCRG00005020698)	paqr8 (ENSLCRG00005020699)	znf395b (ENSLCRG00005020700)	pnocb (ENSLCRG00005020701)	si:ch211-63o20.7 (ENSLCRG00005020703)	elp3 (ENSLCRG00005020704)	KIF13B (ENSLCRG00005020915)	HMBOX1 (ENSLCRG00005020955)	disp1 (ENSLCRG00005020957)	ENSLCRG00005020959	ENSLCRG00005021009	ENSLCRG00005021010	ENSLCRG00005021011 ##22	brox (ENSLCRG00005021013)	ENSLCRG00005021014	mep1a.1 (ENSLCRG00005021017)	mep1a.2 (ENSLCRG00005021026)	ENSLCRG00005021057	ENSLCRG00005021059	ENSLCRG00005021062	ENSLCRG00005021064	ENSLCRG00005021065	crip2l (ENSLCRG00005021066)	ENSLCRG00005021068	btbd9 (ENSLCRG00005021069)	ZFAND3 (ENSLCRG00005021071)	galnt14 (ENSLCRG00005021075)	angel2 (ENSLCRG00005021087)
European seabass	MODERN SPECIES	7	sccpdhb (ENSDLAG00005000966)	snap25a (ENSDLAG00005000946)	ankef1a (ENSDLAG00005000937)	emilin1a (ENSDLAG00005000932)	stmn4 (ENSDLAG00005000928)	ENSDLAG00005000925	mcm3 (ENSDLAG00005000903)	znf395b (ENSDLAG00005000893)	si:ch211-63o20.7 (ENSDLAG00005000871)	elp3 (ENSDLAG00005028766)	ENSDLAG00005000329	ENSDLAG00005030130	ENSDLAG00005000194	ENSDLAG00005015096	ENSDLAG00005015080	ENSDLAG00005015063 ##22	brox (ENSDLAG00005032102)	ENSDLAG00005028785	mep1a.1 (ENSDLAG00005014921)	ENSDLAG00005014732	ENSDLAG00005014720	ENSDLAG00005033196	ENSDLAG00005034237	ENSDLAG00005024664	ENSDLAG00005002507	ENSDLAG00005002332	ENSDLAG00005015819	ENSDLAG00005034768	ENSDLAG00005032505	ENSDLAG00005030559	ENSDLAG00005033983
Gilthead seabream	MODERN SPECIES	14	sccpdhb (ENSSAUG00010016662)	snap25a (ENSSAUG00010017119)	ankef1a (ENSSAUG00010017130)	emilin1a (ENSSAUG00010017133)	si:ch211-63o20.7 (ENSSAUG00010017137)	ENSSAUG00010017139	mcm3 (ENSSAUG00010017176)	znf395b (ENSSAUG00010017431)	pnocb (ENSSAUG00010017434)	elp3 (ENSSAUG00010017444)	KIF13B (ENSSAUG00010017552)	HMBOX1 (ENSSAUG00010020875)	disp1 (ENSSAUG00010020877)	ENSSAUG00010020878	ENSSAUG00010020882	ENSSAUG00010020884 ##22	brox (ENSSAUG00010020887)	ENSSAUG00010020889	mep1a.1 (ENSSAUG00010020890)	mep1a.2 (ENSSAUG00010020892)	ENSSAUG00010020899	ENSSAUG00010002806	ENSSAUG00010002868	ENSSAUG00010002942	ENSSAUG00010002969	ENSSAUG00010002972	NMBR (ENSSAUG00010002975)	gje1a (ENSSAUG00010002980)	vta1 (ENSSAUG00010002986)	adgrg6 (ENSSAUG00010003000)	ENSSAUG00010003041
Perciformes	ANCESTRAL SPECIES	14	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000159678	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b
Channel bull blenny	MODERN SPECIES	16	ankef1a (ENSCGOG00000002928)	emilin1a (ENSCGOG00000002936)	stmn4 (ENSCGOG00000002938)	il17a/f3 (ENSCGOG00000002946)	mcm3 (ENSCGOG00000002993)	paqr8 (ENSCGOG00000003937)	znf395b (ENSCGOG00000003942)	pnocb (ENSCGOG00000003945)	si:ch211-63o20.7 (ENSCGOG00000003948)	elp3 (ENSCGOG00000003965)	KIF13B (ENSCGOG00000004597)	HMBOX1 (ENSCGOG00000007526)	disp1 (ENSCGOG00000007532)	ENSCGOG00000007540	ENSCGOG00000007541	ENSCGOG00000007542 ##22	mep1a.1 (ENSCGOG00000007546)	ENSCGOG00000007646	mep1a.2 (ENSCGOG00000007649)	ENSCGOG00000007654	TAAR1 (ENSCGOG00000007660)	TAAR1 (ENSCGOG00000007664)	TAAR1 (ENSCGOG00000007666)	TAAR1 (ENSCGOG00000007671)	ENSCGOG00000007675	ENSCGOG00000007681	ENSCGOG00000007684	ENSCGOG00000007686	ptchd4 (ENSCGOG00000007689)	opn5 (ENSCGOG00000007692)	cd2ap (ENSCGOG00000007694)
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00950000182878.b.b
Lumpfish	MODERN SPECIES	16	emilin1a (ENSCLMG00005020290)	stmn4 (ENSCLMG00005020288)	ENSCLMG00005020285	mcm3 (ENSCLMG00005020280)	znf395b (ENSCLMG00005020277)	pnocb (ENSCLMG00005020276)	si:ch211-63o20.7 (ENSCLMG00005020275)	elp3 (ENSCLMG00005020255)	KIF13B (ENSCLMG00005020093)	HMBOX1 (ENSCLMG00005020065)	disp1 (ENSCLMG00005020064)	TLR5 (ENSCLMG00005019882)	ENSCLMG00005019866	ENSCLMG00005019864	ENSCLMG00005019861	ENSCLMG00005019859 ##22	brox (ENSCLMG00005019857)	ENSCLMG00005019854	mep1a.1 (ENSCLMG00005019837)	mep1a.2 (ENSCLMG00005019830)	ENSCLMG00005019828	ephx1 (ENSCLMG00005019827)	srp9 (ENSCLMG00005019826)	ENSCLMG00005019825	ENSCLMG00005019824	enah (ENSCLMG00005019823)	lbr (ENSCLMG00005019796)	gja1b (ENSCLMG00005019794)	hsf2 (ENSCLMG00005019793)	serinc1 (ENSCLMG00005019745)	SLC35F1 (ENSCLMG00005019737)
Stickleback	MODERN SPECIES	18	ENSGACG00000004618	snap25a (ENSGACG00000004546)	ankef1a (ENSGACG00000004520)	emilin1a (ENSGACG00000004508)	stmn4 (ENSGACG00000004482)	mcm3 (ENSGACG00000004469)	znf395b (ENSGACG00000004464)	pnocb (ENSGACG00000004461)	si:ch211-63o20.7 (ENSGACG00000004453)	elp3 (ENSGACG00000004427)	KIF13B (ENSGACG00000004401)	HMBOX1 (ENSGACG00000004391)	disp1 (ENSGACG00000004386)	TLR5 (ENSGACG00000004381)	ENSGACG00000004379	ENSGACG00000004376 ##22	ENSGACG00000004375	brox (ENSGACG00000004335)	mep1a.1 (ENSGACG00000004319)	mep1a.2 (ENSGACG00000004292)	ENSGACG00000004287	TAAR1 (ENSGACG00000004284)	TAAR1 (ENSGACG00000004280)	TAAR1 (ENSGACG00000004279)	TAAR1 (ENSGACG00000004274)	ENSGACG00000004270	tnfrsf21 (ENSGACG00000004266)	cd2ap (ENSGACG00000004255)	opn5 (ENSGACG00000004253)	ptchd4 (ENSGACG00000004251)	CNIH3 (ENSGACG00000004246)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000154603.B.l.i.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000154603.B.l.j	ENSGT00940000161228	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000154603.B.l.j	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000161228	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.b
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00940000161228.e	ENSGT00940000154603.B.l.i.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b
Aplocheiloidei	ANCESTRAL SPECIES	102	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.b	ENSGT00940000154603.B.l.i.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000161258.b
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015012398	ENSNFUG00015012397	ENSNFUG00015012390	fam49a (ENSNFUG00015012353)	znf395b (ENSNFUG00015012332)	PNOCB (ENSNFUG00015012328)	ENSNFUG00015012325	si:ch211-63o20.7 (ENSNFUG00015012319)	elp3 (ENSNFUG00015011836)	KIF13B (ENSNFUG00015010336)	HMBOX1 (ENSNFUG00015010215)	ENSNFUG00015010203	disp1 (ENSNFUG00015010069)	TLR5 (ENSNFUG00015010037)	ENSNFUG00015009990	ENSNFUG00015009973 ##22	BROX (ENSNFUG00015009836)	ENSNFUG00015009802	mep1a.1 (ENSNFUG00015009781)	ENSNFUG00015009767	mep1a.2 (ENSNFUG00015009731)	ENSNFUG00015009711	ENSNFUG00015009705	IFT88 (ENSNFUG00015009480)	ENSNFUG00015009443	ENSNFUG00015009432	TAAR1 (ENSNFUG00015009419)	TAAR1 (ENSNFUG00015009403)	TAAR1 (ENSNFUG00015009379)	TAAR1 (ENSNFUG00015009373)	TAAR1 (ENSNFUG00015009355)
Mangrove rivulus	MODERN SPECIES	174	stmn4 (ENSKMAG00000019680)	il17a/f3 (ENSKMAG00000019670)	mcm3 (ENSKMAG00000019607)	paqr8 (ENSKMAG00000019589)	znf395b (ENSKMAG00000019578)	pnocb (ENSKMAG00000019559)	si:ch211-63o20.7 (ENSKMAG00000019551)	elp3 (ENSKMAG00000019511)	ENSKMAG00000019492	KIF13B (ENSKMAG00000019450)	HMBOX1 (ENSKMAG00000019434)	disp1 (ENSKMAG00000019401)	TLR5 (ENSKMAG00000019374)	ENSKMAG00000019359	ENSKMAG00000019337	ENSKMAG00000019322 ##22	brox (ENSKMAG00000019289)	ENSKMAG00000019268	mep1a.1 (ENSKMAG00000019243)	mep1a.2 (ENSKMAG00000019203)	ENSKMAG00000019176	ENSKMAG00000019166	ENSKMAG00000019149	ENSKMAG00000019131	TAAR1 (ENSKMAG00000019116)	TAAR1 (ENSKMAG00000019106)	ENSKMAG00000019072
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.e	ENSGT00940000154603.B.l.i.b.a.a	ENSGT00940000161228.e	ENSGT00940000154603.B.l.i.b.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.f	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b.c	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.e	ENSGT00940000154603.B.l.i.b.a.a	ENSGT00940000161228.e	ENSGT00940000154603.B.l.i.b.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.f	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Poecilia	ANCESTRAL SPECIES	9	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b.c	ENSGT00940000154603.B.l.i.b.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.e	ENSGT00940000161228.e	ENSGT00940000154603.B.l.i.b.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.f	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.b.a.a.a.a.b
NAME_6	ANCESTRAL SPECIES	85	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b.c	ENSGT00940000154603.B.l.i.b.b.d	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.e	ENSGT00940000154603.B.l.i.b.a.a	ENSGT00940000161228.e	ENSGT00940000154603.B.l.i.b.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.f	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Amazon molly	MODERN SPECIES	463	ankef1a (ENSPFOG00000002517)	emilin1a (ENSPFOG00000002432)	stmn4 (ENSPFOG00000002375)	il17a/f3 (ENSPFOG00000024626)	mcm3 (ENSPFOG00000002039)	paqr8 (ENSPFOG00000020530)	znf395b (ENSPFOG00000001931)	pnocb (ENSPFOG00000001912)	si:ch211-63o20.7 (ENSPFOG00000001871)	elp3 (ENSPFOG00000001657)	KIF13B (ENSPFOG00000001119)	HMBOX1 (ENSPFOG00000000843)	disp1 (ENSPFOG00000000773)	TLR5 (ENSPFOG00000000726)	ENSPFOG00000020529	ENSPFOG00000020528 ##22	brox (ENSPFOG00000000628)	ENSPFOG00000023228	mep1a.1 (ENSPFOG00000000564)	mep1a.2 (ENSPFOG00000000495)	ENSPFOG00000000466	TAAR1 (ENSPFOG00000024611)	ENSPFOG00000000424	ENSPFOG00000000399	TAAR1 (ENSPFOG00000020527)	TAAR1 (ENSPFOG00000020526)	TAAR1 (ENSPFOG00000020525)	TAAR1 (ENSPFOG00000000390)
Sailfin molly	MODERN SPECIES	122	stmn4 (ENSPLAG00000014180)	ENSPLAG00000014208	mcm3 (ENSPLAG00000014257)	paqr8 (ENSPLAG00000014267)	znf395b (ENSPLAG00000014277)	pnocb (ENSPLAG00000014284)	si:ch211-63o20.7 (ENSPLAG00000014289)	elp3 (ENSPLAG00000014319)	ENSPLAG00000014340	KIF13B (ENSPLAG00000014410)	HMBOX1 (ENSPLAG00000014436)	disp1 (ENSPLAG00000014443)	TLR5 (ENSPLAG00000014543)	ENSPLAG00000014608	ENSPLAG00000014617	ENSPLAG00000014622 ##22	brox (ENSPLAG00000014667)	ENSPLAG00000014685	mep1a.1 (ENSPLAG00000014709)	mep1a.2 (ENSPLAG00000014731)	ENSPLAG00000014745	ENSPLAG00000014755	ENSPLAG00000014769	TAAR1 (ENSPLAG00000014783)	ENSPLAG00000014793
Guppy	MODERN SPECIES	452	ankef1a (ENSPREG00000019273)	emilin1a (ENSPREG00000019292)	stmn4 (ENSPREG00000019308)	ENSPREG00000019327	mcm3 (ENSPREG00000019355)	paqr8 (ENSPREG00000019405)	znf395b (ENSPREG00000019411)	pnocb (ENSPREG00000019418)	si:ch211-63o20.7 (ENSPREG00000019424)	elp3 (ENSPREG00000019454)	KIF13B (ENSPREG00000019518)	HMBOX1 (ENSPREG00000019608)	disp1 (ENSPREG00000019639)	TLR5 (ENSPREG00000019675)	ENSPREG00000019705	ENSPREG00000019776 ##22	brox (ENSPREG00000019785)	ENSPREG00000019807	mep1a.1 (ENSPREG00000019833)	mep1a.2 (ENSPREG00000019852)	ENSPREG00000019871	ENSPREG00000019889	ENSPREG00000019900	ENSPREG00000019916	ENSPREG00000019937	TAAR1 (ENSPREG00000019961)	TAAR1 (ENSPREG00000019969)	ENSPREG00000019992	ENSPREG00000020026	TAAR1 (ENSPREG00000020037)	ENSPREG00000020041
Platyfish	MODERN SPECIES	6	ankef1a (ENSXMAG00000007741)	emilin1a (ENSXMAG00000007750)	stmn4 (ENSXMAG00000007755)	ENSXMAG00000024073	mcm3 (ENSXMAG00000007764)	paqr8 (ENSXMAG00000019722)	znf395b (ENSXMAG00000007800)	pnocb (ENSXMAG00000007809)	si:ch211-63o20.7 (ENSXMAG00000025014)	elp3 (ENSXMAG00000001825)	KIF13B (ENSXMAG00000001804)	HMBOX1 (ENSXMAG00000001795)	disp1 (ENSXMAG00000001789)	TLR5 (ENSXMAG00000001788)	ENSXMAG00000020057	ENSXMAG00000001787 ##22	brox (ENSXMAG00000001776)	ENSXMAG00000001775	mep1a.1 (ENSXMAG00000001768)	mep1a.2 (ENSXMAG00000001763)	ENSXMAG00000014328	ENSXMAG00000021957	ENSXMAG00000025044	TAAR1 (ENSXMAG00000026419)	TAAR1 (ENSXMAG00000026574)	ENSXMAG00000026433	ENSXMAG00000028185	ENSXMAG00000007726	ENSXMAG00000023376	ENSXMAG00000025144	TAAR1 (ENSXMAG00000020323)
NAME_4	ANCESTRAL SPECIES	367																ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.i.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.e.b
Sheepshead minnow	MODERN SPECIES	1056															ENSCVAG00000006964	ENSCVAG00000006971 ##22	brox (ENSCVAG00000006995)	ENSCVAG00000007002	mep1a.1 (ENSCVAG00000007010)	mep1a.2 (ENSCVAG00000007028)	ENSCVAG00000007033	ENSCVAG00000007049	ENSCVAG00000007056	TAAR1 (ENSCVAG00000000681)	ENSCVAG00000000618	TAAR1 (ENSCVAG00000007100)
Mummichog	MODERN SPECIES	793																ENSFHEG00000011929 ##22	brox (ENSFHEG00000011961)	ENSFHEG00000011969	mep1a.1 (ENSFHEG00000011980)	mep1a.2 (ENSFHEG00000011987)	ENSFHEG00000011994	ENSFHEG00000012003
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000158937.b	ENSGT00390000016736.a.j	ENSGT00550000074807.d.a.a	ENSGT00940000163080.a.d	ENSGT00940000164711.b.a.b	ENSGT00950000182980.a.b.a.b.a.a.f	ENSGT01020000230346.C	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00940000156521.b	ENSGT00940000164935.b	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156535	ENSGT01050000245580.A	ENSGT00970000193439.f.a
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00390000001445	ENSGT00550000075082	ENSGT00390000005003	ENSGT00940000159056.g	ENSGT00940000160877.g.a	ENSGT00940000158937.b	ENSGT00390000016736.a.j	ENSGT00550000074807.d.a.a	ENSGT00940000163080.a.d	ENSGT00940000164711.b.a.b	ENSGT00950000182980.a.b.a.b.a.a.f	ENSGT01020000230346.C	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00940000156521.b	ENSGT00940000164935.b.e	ENSGT00940000158912.j.a	ENSGT00940000156528.d	ENSGT00940000163520.A.a.a.a.b.b.d	ENSGT00940000157501	ENSGT00940000159887	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156535	ENSGT01050000245580.A	ENSGT00940000162649.f.a.b.a.a.a.a
Chinese medaka	MODERN SPECIES	520										zgc:153383 (ENSOSIG00000017236)	psma6b (ENSOSIG00000017240)	nfkbiaa (ENSOSIG00000017241)	ENSOSIG00000017245	calm1b (ENSOSIG00000017248)	psmc1a (ENSOSIG00000017265)	ENSOSIG00000017272 ##22	brox (ENSOSIG00000017273)	ENSOSIG00000017276	mep1a.1 (ENSOSIG00000017288)	PLEKHG3 (ENSOSIG00000017486)	ENSOSIG00000017490	ENSOSIG00000017496	ENSOSIG00000017498	PAK6 (ENSOSIG00000003796)	myh6 (ENSOSIG00000004426)	ENSOSIG00000004432	zbtb1 (ENSOSIG00000004485)	ZBTB25 (ENSOSIG00000004487)	KIF26A (ENSOSIG00000004495)	gopc (ENSOSIG00000004546)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.j	ENSGT00940000161228	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566
Cichlidae	ANCESTRAL SPECIES	12	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00950000182878.b.b	ENSGT00940000155731.a	ENSGT00940000161395	ENSGT00390000002210.c.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00940000154603.A.f.b	ENSGT00940000156212	ENSGT00940000157566	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00950000182878.b.b	ENSGT00940000155731.a	ENSGT00940000161395	ENSGT00390000002210.c.b	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00940000154603.A.f.b	ENSGT00940000156212	ENSGT00940000157566.i	ENSGT01100000263524.B.a.b	ENSGT00940000156827	ENSGT00950000182834.A.a.b.c	ENSGT00940000166260	ENSGT00950000182878.b.b	ENSGT00940000155731.a	ENSGT00940000161395	ENSGT00390000002210.c.b	ENSGT00390000000417.a.a.b.a.b	ENSGT00940000157376
Haplochromini	ANCESTRAL SPECIES	13	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00940000154603.A.f.b	ENSGT00940000156212	ENSGT00940000157566.i	ENSGT01100000263524.B.a.b
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00940000161541	ENSGT00940000156212	ENSGT00940000157566.i	ENSGT01100000263524.B.a.b
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e.c	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00940000161541	ENSGT00940000156212	ENSGT00940000157566.i	ENSGT01100000263524.B.a.b
Zebra mbuna	MODERN SPECIES	173																ENSMZEG00005024135 ##22	brox (ENSMZEG00005024137)	ENSMZEG00005024141	ENSMZEG00005024142
Eastern happy	MODERN SPECIES	6	emilin1a (ENSACLG00000008275)	stmn4 (ENSACLG00000008407)	ENSACLG00000008427	mcm3 (ENSACLG00000008434)	ENSACLG00000008462	znf395b (ENSACLG00000008468)	pnocb (ENSACLG00000008488)	si:ch211-63o20.7 (ENSACLG00000008500)	elp3 (ENSACLG00000008972)	KIF13B (ENSACLG00000008995)	HMBOX1 (ENSACLG00000009067)	disp1 (ENSACLG00000009170)	TLR5 (ENSACLG00000009202)	ENSACLG00000009215	ENSACLG00000009234	ENSACLG00000009586 ##22	brox (ENSACLG00000009591)	ENSACLG00000009620	ENSACLG00000009624	ENSACLG00000009628	ENSACLG00000009629	ENSACLG00000009633	cd2ap (ENSACLG00000010066)	opn5 (ENSACLG00000010092)	ENSACLG00000010450	nkx2.2b (ENSACLG00000010492)	NKX2-4 (ENSACLG00000010500)	xrn2 (ENSACLG00000010522)	ENSACLG00000010669	insm1a (ENSACLG00000010686)	CFAP61 (ENSACLG00000010755)
P. nyererei	MODERN SPECIES	308	stmn4 (ENSPNYG00000021377)	ENSPNYG00000021361	mcm3 (ENSPNYG00000021333)	ENSPNYG00000021315	znf395b (ENSPNYG00000021284)	pnocb (ENSPNYG00000021265)	si:ch211-63o20.7 (ENSPNYG00000021251)	elp3 (ENSPNYG00000021199)	KIF13B (ENSPNYG00000021149)	HMBOX1 (ENSPNYG00000021100)	disp1 (ENSPNYG00000021059)	TLR5 (ENSPNYG00000021037)	ENSPNYG00000020997	ENSPNYG00000020988	ENSPNYG00000020979	ENSPNYG00000020971 ##22	brox (ENSPNYG00000020941)	ENSPNYG00000020923	ENSPNYG00000020913
Burton s mouthbrooder	MODERN SPECIES	1345																ENSHBUG00000017713 ##22	brox (ENSHBUG00000017705)	ENSHBUG00000017663	ENSHBUG00000017634	ENSHBUG00000017613
Lyretail cichlid	MODERN SPECIES	560								elp3 (ENSNBRG00000005050)	ENSNBRG00000004981	HMBOX1 (ENSNBRG00000004817)	disp1 (ENSNBRG00000004773)	TLR5 (ENSNBRG00000004763)	ENSNBRG00000004743	ENSNBRG00000004724	ENSNBRG00000004703	ENSNBRG00000004694 ##22	brox (ENSNBRG00000004633)	ENSNBRG00000004600
Nile tilapia	MODERN SPECIES	6	mcm3 (ENSONIG00000001295)	paqr8 (ENSONIG00000020922)	znf395b (ENSONIG00000036384)	pnocb (ENSONIG00000040429)	si:ch211-63o20.7 (ENSONIG00000001306)	elp3 (ENSONIG00000001307)	KIF13B (ENSONIG00000001311)	HMBOX1 (ENSONIG00000001328)	ENSONIG00000036493	disp1 (ENSONIG00000001330)	TLR5 (ENSONIG00000001333)	ENSONIG00000042239	ENSONIG00000020923	ENSONIG00000033230	ENSONIG00000039277	ENSONIG00000020924 ##22	ENSONIG00000035080	brox (ENSONIG00000001336)	ENSONIG00000032556	ENSONIG00000029794	mep1a.1 (ENSONIG00000001344)	mep1a.2 (ENSONIG00000001350)	ENSONIG00000042049
Midas cichlid	MODERN SPECIES	711	fam49a (ENSACIG00000012571)	fbxo16 (ENSACIG00000012556)	fzd3a (ENSACIG00000012531)	cdc42bpab (ENSACIG00000012444)	lft1 (ENSACIG00000012429)	hnrnpub (ENSACIG00000012138)	ENSACIG00000012055	cnstb (ENSACIG00000012033)	ENSACIG00000012004	snap25a (ENSACIG00000011995)	HMBOX1 (ENSACIG00000011971)	disp1 (ENSACIG00000011853)	TLR5 (ENSACIG00000011731)	ENSACIG00000011715	ENSACIG00000011702	ENSACIG00000011696 ##22	brox (ENSACIG00000011669)	ENSACIG00000011649	mep1a.1 (ENSACIG00000011626)	mep1a.2 (ENSACIG00000011571)	ENSACIG00000011559
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.j	ENSGT00940000161228	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.j	ENSGT00940000161228	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Amphiprion	ANCESTRAL SPECIES	113	ENSGT01030000234597.a.b.a.b	ENSGT00940000175981	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00990000203917	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000164218	ENSGT00390000007341.b ##22	ENSGT00390000006681	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l.j	ENSGT00940000161228	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a
Clown anemonefish	MODERN SPECIES	778															ENSAOCG00000023535	ENSAOCG00000023539 ##22	brox (ENSAOCG00000023570)	ENSAOCG00000023587	mep1a.1 (ENSAOCG00000023596)	mep1a.2 (ENSAOCG00000005439)	ENSAOCG00000005462	ENSAOCG00000005479	ENSAOCG00000005492	TAAR1 (ENSAOCG00000005522)	TAAR1 (ENSAOCG00000005540)	TAAR1 (ENSAOCG00000005558)
Orange clownfish	MODERN SPECIES	2	ENSAPEG00000014273	mcm3 (ENSAPEG00000014200)	paqr8 (ENSAPEG00000014188)	znf395b (ENSAPEG00000014182)	pnocb (ENSAPEG00000014170)	si:ch211-63o20.7 (ENSAPEG00000014157)	elp3 (ENSAPEG00000014113)	ENSAPEG00000014090	ENSAPEG00000014024	HMBOX1 (ENSAPEG00000013963)	ENSAPEG00000013938	ENSAPEG00000013921	disp1 (ENSAPEG00000013871)	ENSAPEG00000013826	ENSAPEG00000013805	ENSAPEG00000013795 ##22	brox (ENSAPEG00000013758)	ENSAPEG00000013748	mep1a.1 (ENSAPEG00000013726)	mep1a.2 (ENSAPEG00000013681)	ENSAPEG00000013665	ENSAPEG00000013647	ENSAPEG00000013637	TAAR1 (ENSAPEG00000013623)	TAAR1 (ENSAPEG00000013609)	TAAR1 (ENSAPEG00000013590)	disp1 (ENSAPEG00000013554)
Spiny chromis	MODERN SPECIES	1206												ENSAPOG00000009445	mep1a.2 (ENSAPOG00000009428)	mep1a.1 (ENSAPOG00000009401)	ENSAPOG00000009359	ENSAPOG00000009340 ##22	brox (ENSAPOG00000009329)	ENSAPOG00000009273	TLR5 (ENSAPOG00000009234)	disp1 (ENSAPOG00000009224)
Bicolor damselfish	MODERN SPECIES	2194														ENSSPAG00000013251	ENSSPAG00000013264	ENSSPAG00000013301 ##22	brox (ENSSPAG00000013307)
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00940000155459.x.b	ENSGT00940000153897.b.a.a.b	ENSGT00940000156975.d.a	ENSGT00940000154677.b.a	ENSGT00940000156484.b.c	ENSGT00390000017528	ENSGT00940000162504	ENSGT01090000260082.d.b.a	ENSGT00940000158248.a	ENSGT00940000159665	ENSGT00950000183093.C.h	ENSGT00940000161139	ENSGT00940000167312	ENSGT00940000174492	ENSGT00940000160421	ENSGT00390000007341.b ##22	ENSGT00950000182863.B.b	ENSGT00940000158104	ENSGT00940000155428.b	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00390000008327	ENSGT00440000033970	ENSGT00390000005826.a.b.e	ENSGT00870000136554	ENSGT00950000182986.a.b.a.a	ENSGT00940000158824	ENSGT00550000074694.b	ENSGT00520000055567.a.b
Asian bonytongue	MODERN SPECIES	6	ENSSFOG00015031571	ENSSFOG00015030842	pacc1 (ENSSFOG00015015014)	nenf (ENSSFOG00015028126)	tagapa (ENSSFOG00015015035)	ezra (ENSSFOG00015015054)	ENSSFOG00015015092	ENSSFOG00015015141	ENSSFOG00015029683	HHIPL2 (ENSSFOG00015015157)	ENSSFOG00015029731	ENSSFOG00015026453	ENSSFOG00015030624	ENSSFOG00015015203	ENSSFOG00015015236	ENSSFOG00015015314 ##22	sntg2 (ENSSFOG00015015327)	TPO (ENSSFOG00015015364)	PLCB1 (ENSSFOG00015015419)	tmx4 (ENSSFOG00015025717)	hao1 (ENSSFOG00015015500)	bmp2a (ENSSFOG00015015541)	ENSSFOG00015015571	crls1 (ENSSFOG00015024669)	MCM8 (ENSSFOG00015015633)	ENSSFOG00015030185	TRIB2 (ENSSFOG00015030489)	KLHL29 (ENSSFOG00015015752)	cdc5l (ENSSFOG00015015844)	supt3h (ENSSFOG00015015906)	runx2a (ENSSFOG00015015956)
P. kingsleyae	MODERN SPECIES	34	ANKRD6 (ENSPKIG00000016616)	rragd (ENSPKIG00000016566)	GABRR2 (ENSPKIG00000016515)	GABRR1 (ENSPKIG00000016472)	CNR1 (ENSPKIG00000016456)	AKIRIN2 (ENSPKIG00000016435)	orc3 (ENSPKIG00000016370)	cga (ENSPKIG00000016334)	ENSPKIG00000016324	ENSPKIG00000016301	ENSPKIG00000016272	HHIPL2 (ENSPKIG00000016234)	ENSPKIG00000016217	ENSPKIG00000016203	ENSPKIG00000016175	ENSPKIG00000016164 ##22	sntg2 (ENSPKIG00000016120)	TPO (ENSPKIG00000016071)	PLCB1 (ENSPKIG00000015928)	tmx4 (ENSPKIG00000015835)	hao1 (ENSPKIG00000015780)	bmp2a (ENSPKIG00000015740)	gdf3 (ENSPKIG00000015729)	crls1 (ENSPKIG00000015713)	MCM8 (ENSPKIG00000015648)	NAPB (ENSPKIG00000015563)	TRIB2 (ENSPKIG00000015534)	KLHL29 (ENSPKIG00000015471)	cdc5l (ENSPKIG00000015398)	supt3h (ENSPKIG00000015333)	runx2a (ENSPKIG00000015280)
Spotted gar	MODERN SPECIES	647	sntg2 (ENSLOCG00000016425)	HHIPL2 (ENSLOCG00000016424)	taf1a (ENSLOCG00000016421)	MIA3 (ENSLOCG00000016418)	aida (ENSLOCG00000016416)	brox (ENSLOCG00000016414)	FAM177B (ENSLOCG00000016412)	disp1 (ENSLOCG00000016410)	TLR5 (ENSLOCG00000018000)	susd4 (ENSLOCG00000016408)	ENSLOCG00000017999	ENSLOCG00000016406	ENSLOCG00000017998	ENSLOCG00000017997	zgc:136872 (ENSLOCG00000016403)	ENSLOCG00000017996 ##22	rnf8 (ENSLOCG00000016402)	TCTE1 (ENSLOCG00000016401)	tmem151ba (ENSLOCG00000016400)	nfkbie (ENSLOCG00000016399)	slc35b2 (ENSLOCG00000016398)	hsp90ab1 (ENSLOCG00000016396)	DUSP10 (ENSLOCG00000016394)	hlx1 (ENSLOCG00000016392)	MTARC2 (ENSLOCG00000016389)	slc35f6 (ENSLOCG00000016385)	kcnk3a (ENSLOCG00000016383)	ENSLOCG00000016382	enpp1 (ENSLOCG00000016378)	SYTL3 (ENSLOCG00000016375)	ezra (ENSLOCG00000016372)
Elephant shark	MODERN SPECIES	1508	ENSCMIG00000020022	ndufaf5 (ENSCMIG00000020034)	esf1 (ENSCMIG00000020036)	tasp1 (ENSCMIG00000020037)	ism1 (ENSCMIG00000020039)	SPTLC3 (ENSCMIG00000020042)	slc1a4 (ENSCMIG00000020050)	ENSCMIG00000020052	rab1ab (ENSCMIG00000020055)	slc22a7a (ENSCMIG00000020057)	ENSCMIG00000020058	TTBK1 (ENSCMIG00000000227)	capn1a (ENSCMIG00000000327)	ENSCMIG00000000577	ENSCMIG00000000686	ENSCMIG00000000695 ##22	cmtr1 (ENSCMIG00000000861)	ENSCMIG00000001183	ENSCMIG00000001198 ##14	btbd9 (ENSCMIG00000001219)	tbp (ENSCMIG00000001238)	lgalslb (ENSCMIG00000001270)	PELI1 (ENSCMIG00000001287)	vps54 (ENSCMIG00000001326)	ugp2 (ENSCMIG00000001606)	mdh1 (ENSCMIG00000002025)	WDPCP (ENSCMIG00000002187)	EHBP1 (ENSCMIG00000002230)	ENSCMIG00000002307	ENSCMIG00000002311	b3gnt2a (ENSCMIG00000002317)
Ciona	ANCESTRAL SPECIES																	ENSGT00390000007341 #22
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000023409	ENSCING00000008783	ENSCING00000008788	ENSCING00000019945	ENSCING00000009822	ENSCING00000019580	ENSCING00000009823	foxm (ENSCING00000008790)	ENSCING00000013450	ENSCING00000019370	ENSCING00000020811	ENSCING00000013451	ENSCING00000022701	ENSCING00000008793	ENSCING00000021395	ENSCING00000018255 #22	ENSCING00000009824	ENSCING00000008795	ENSCING00000013452	ENSCING00000008796	ENSCING00000013453	ENSCING00000008798	ENSCING00000008800	ENSCING00000008802	ENSCING00000019279	ENSCING00000020747	ENSCING00000021422	ENSCING00000013455	ENSCING00000008806	ENSCING00000024249	ENSCING00000021029
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00390000007341 #22
Fruitfly	MODERN SPECIES	19	Rpp14b (FBgn0039744)	spn-A (FBgn0003479)	Jasper (FBgn0039743)	CG15528 (FBgn0039742)	CG7943 (FBgn0039741)	RpL32 (FBgn0002626)	Sry-delta (FBgn0003512)	Sry-alpha (FBgn0003510)	Sry-beta (FBgn0003511)	janA (FBgn0001280)	janB (FBgn0001281)	ocn (FBgn0041102)	ZIPIC (FBgn0039740)	Axn (FBgn0026597)	RpS28a (FBgn0039739)	Mgat2 (FBgn0039738) #22	CG7920 (FBgn0039737)	CG7912 (FBgn0039736)	Nlp (FBgn0016685)	Nph (FBgn0039735)	Tace (FBgn0039734)	CG34298 (FBgn0085327)	CG11504 (FBgn0039733)	CG15525 (FBgn0039732)	Sas-6 (FBgn0039731)	CG7903 (FBgn0039730)	Acph-1 (FBgn0000032)	CG7896 (FBgn0039728)	TkR99D (FBgn0004622)	Vps13B (FBgn0039727)	eIF2Balpha (FBgn0039726)
Caenorhabditis elegans	MODERN SPECIES	5	ima-1 (WBGene00002072)	pgap-1 (WBGene00011835)	mxl-1 (WBGene00003509)	mam-4 (WBGene00011836)	T19B10.12 (WBGene00050898)	srsx-33 (WBGene00011837)	srsx-31 (WBGene00008552)	lgc-36 (WBGene00008551)	F07B10.7 (WBGene00077514)	F07B10.4 (WBGene00008550)	cln-3.1 (WBGene00000539)	str-116 (WBGene00006167)	str-115 (WBGene00006166)	clec-222 (WBGene00007283)	clec-223 (WBGene00007282)	gly-20 (WBGene00001645) #22	C03E10.3 (WBGene00007281)	C03E10.1 (WBGene00007279)	T03F7.6 (WBGene00011403)	T03F7.5 (WBGene00011402)	srh-47 (WBGene00005270)	srh-46 (WBGene00005269)	srh-45 (WBGene00005268)	snf-11 (WBGene00004910)	T03F7.7 (WBGene00011404)	cutl-18 (WBGene00009830)	F47G9.4 (WBGene00009831)	str-141 (WBGene00006189)	tmed-10 (WBGene00009829)	F47G9.6 (WBGene00009833)	T02E9.6 (WBGene00044203)