Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Turbot	MODERN SPECIES	11	ndufa12 (ENSSMAG00000005726) #7	fgd6 (ENSSMAG00000005702) #8	vezt (ENSSMAG00000028160) #9	METAP2 (ENSSMAG00000005667) #10	USP44 (ENSSMAG00000005649) #11	ntn4 (ENSSMAG00000005605) #12	SNRPF (ENSSMAG00000005533) #13	amdhd1 (ENSSMAG00000005484) #14	ENSSMAG00000005457 #15	ENSSMAG00000005360 #16	klhl42 (ENSSMAG00000005334) #17	ENSSMAG00000022137 #18	itfg2 (ENSSMAG00000005257) #19	ENSSMAG00000005248 #20	pah (ENSSMAG00000005207) #21	th2 (ENSSMAG00000005181) #22	nup37 (ENSSMAG00000005160) #23	parpbp (ENSSMAG00000005145) #24	pmch (ENSSMAG00000022672) #25	igf1 (ENSSMAG00000005115) #26	ENSSMAG00000030625 #27	ENSSMAG00000005081 #28	btbd11a (ENSSMAG00000005012) #29	ENSSMAG00000004964 #30	ENSSMAG00000005003 #31	tnnt2c (ENSSMAG00000004942) #32	ENSSMAG00000004931 #33	ENSSMAG00000004880 #34	ENSSMAG00000004819 #35	ENSSMAG00000004787 #36	ENSSMAG00000004775 #37
Tongue sole	MODERN SPECIES	18	pawr (ENSCSEG00000004529) #37	syt1a (ENSCSEG00000004537) #36	cyb5r3 (ENSCSEG00000004558) #35	ENSCSEG00000004570 #34	syt10 (ENSCSEG00000004582) #33	MTERF2 (ENSCSEG00000004606) #31	cry1a (ENSCSEG00000004597) #30	amdhd1 (ENSCSEG00000004613) #14	tspan9b (ENSCSEG00000004608) #15	elapor2b (ENSCSEG00000004623) #16	klhl42 (ENSCSEG00000004627) #17	nrip2 (ENSCSEG00000004633) #18	ENSCSEG00000004636	ascl1a (ENSCSEG00000004639) #20	pah (ENSCSEG00000004644) #21	th2 (ENSCSEG00000004662) #22	nup37 (ENSCSEG00000004667) #23	parpbp (ENSCSEG00000004674) #24	ENSCSEG00000004687	igf1 (ENSCSEG00000004697) #26	ENSCSEG00000004721 #28	btbd11a (ENSCSEG00000004735) #29	snrpf (ENSCSEG00000004748) #13	ntn4 (ENSCSEG00000004754) #12	usp44 (ENSCSEG00000004765) #11	metap2b (ENSCSEG00000004778) #10	vezt (ENSCSEG00000004802) #9	fgd6 (ENSCSEG00000004819) #8	ENSCSEG00000004837	TMCC3 (ENSCSEG00000005859)	eri1 (ENSCSEG00000005863)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00390000018424	ENSGT01010000222336.b.a.b.a	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00390000017998	ENSGT00940000157998
Greater amberjack	MODERN SPECIES	60	ndufa12 (ENSSDUG00000016121) #7	fgd6 (ENSSDUG00000016132) #8	vezt (ENSSDUG00000016162) #9	metap2b (ENSSDUG00000016178) #10	usp44 (ENSSDUG00000016194) #11	ntn4 (ENSSDUG00000016238) #12	snrpf (ENSSDUG00000016283) #13	amdhd1 (ENSSDUG00000016290) #14	tspan9b (ENSSDUG00000016318) #15	elapor2b (ENSSDUG00000016349) #16	klhl42 (ENSSDUG00000016448) #17	nrip2 (ENSSDUG00000016462) #18	itfg2 (ENSSDUG00000016493) #19	ascl1a (ENSSDUG00000016538) #20	pah (ENSSDUG00000016548) #21	th2 (ENSSDUG00000016577) #22	nup37 (ENSSDUG00000016615) #23	parpbp (ENSSDUG00000016645) #24	pmch (ENSSDUG00000016677) #25	igf1 (ENSSDUG00000016698) #26	ENSSDUG00000016734 #28	btbd11a (ENSSDUG00000016744) #29	cry1a (ENSSDUG00000016784) #30	MTERF2 (ENSSDUG00000016802) #31	ENSSDUG00000016804	acot14 (ENSSDUG00000016832)	AVPR1A (ENSSDUG00000016871)	srgap1b (ENSSDUG00000017062)	kics2 (ENSSDUG00000017120)	TMEM19 (ENSSDUG00000017135)	rab3ip (ENSSDUG00000017171)
Yellowtail amberjack	MODERN SPECIES	2989			vezt (ENSSLDG00000005374) #9	metap2b (ENSSLDG00000005344) #10	usp44 (ENSSLDG00000005301) #11	ntn4 (ENSSLDG00000005247) #12	snrpf (ENSSLDG00000005119) #13	amdhd1 (ENSSLDG00000005072) #14	tspan9b (ENSSLDG00000004989) #15	elapor2b (ENSSLDG00000004921) #16	klhl42 (ENSSLDG00000004894) #17	nrip2 (ENSSLDG00000004872) #18	itfg2 (ENSSLDG00000004809) #19	ascl1a (ENSSLDG00000004770) #20	pah (ENSSLDG00000004715) #21	th2 (ENSSLDG00000004650) #22	nup37 (ENSSLDG00000004590) #23	parpbp (ENSSLDG00000004566) #24	pmch (ENSSLDG00000004554) #25	igf1 (ENSSLDG00000004529) #26	ENSSLDG00000004485 #28	btbd11a (ENSSLDG00000004377) #29	MTERF2 (ENSSLDG00000004358) #31	cry1a (ENSSLDG00000004294) #30	ENSSLDG00000004226	acot14 (ENSSLDG00000004148)	AVPR1A (ENSSLDG00000004134)	srgap1b (ENSSLDG00000004008)
Barramundi perch	MODERN SPECIES	292	fgd6 (ENSLCAG00010026885) #8	ENSLCAG00010026889	vezt (ENSLCAG00010026891) #9	metap2b (ENSLCAG00010026892) #10	usp44 (ENSLCAG00010026893) #11	ntn4 (ENSLCAG00010026894) #12	snrpf (ENSLCAG00010026895) #13	amdhd1 (ENSLCAG00010026896) #14	klhl42 (ENSLCAG00010026897) #17	elapor2b (ENSLCAG00010026919) #16	tspan9b (ENSLCAG00010026930) #15	nrip2 (ENSLCAG00010026932) #18	itfg2 (ENSLCAG00010026936) #19	ascl1a (ENSLCAG00010026942) #20	pah (ENSLCAG00010026972) #21	th2 (ENSLCAG00010027029) #22	nup37 (ENSLCAG00010027047) #23	parpbp (ENSLCAG00010027051) #24	pmch (ENSLCAG00010027053) #25	igf1 (ENSLCAG00010027059) #26	ENSLCAG00010027073 #28	ENSLCAG00010027076	btbd11a (ENSLCAG00010027077) #29	cry1a (ENSLCAG00010027085) #30	MTERF2 (ENSLCAG00010027093) #31	tnnt2c (ENSLCAG00010027095) #32	syt10 (ENSLCAG00010027097) #33
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Climbing perch	MODERN SPECIES	14	ndufa12 (ENSATEG00000022496) #7	fgd6 (ENSATEG00000022513) #8	vezt (ENSATEG00000022542) #9	METAP2 (ENSATEG00000022567) #10	USP44 (ENSATEG00000022583) #11	ntn4 (ENSATEG00000022608) #12	SNRPF (ENSATEG00000022625) #13	amdhd1 (ENSATEG00000022667) #14	ENSATEG00000022678 #15	ENSATEG00000022701 #16	klhl42 (ENSATEG00000022766) #17	ENSATEG00000022782 #18	itfg2 (ENSATEG00000022806) #19	ENSATEG00000022825 #20	pah (ENSATEG00000022831) #21	th2 (ENSATEG00000022864) #22	NUP37 (ENSATEG00000022933) #23	parpbp (ENSATEG00000022956) #24	pmch (ENSATEG00000022998) #25	igf1 (ENSATEG00000023026) #26	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064) #29	ENSATEG00000023083 #30	tnnt2c (ENSATEG00000023096) #32	ENSATEG00000023107 #33	ENSATEG00000026602 #33	ENSATEG00000023121 #34	ENSATEG00000023152 #35	ENSATEG00000023170 #36	ENSATEG00000023210 #37
Siamese fighting fish	MODERN SPECIES	20	fgf6b (ENSBSLG00000005740)	ndufa12 (ENSBSLG00000005750) #7	fgd6 (ENSBSLG00000005771) #8	vezt (ENSBSLG00000005881) #9	metap2b (ENSBSLG00000005901) #10	usp44 (ENSBSLG00000005978) #11	NTN4 (ENSBSLG00000005981) #12	amdhd1 (ENSBSLG00000005996) #14	tspan9b (ENSBSLG00000006012) #15	elapor2b (ENSBSLG00000006020) #16	klhl42 (ENSBSLG00000006090) #17	nrip2 (ENSBSLG00000006093) #18	itfg2 (ENSBSLG00000006095) #19	ascl1a (ENSBSLG00000006101) #20	pah (ENSBSLG00000006111) #21	th2 (ENSBSLG00000006132) #22	nup37 (ENSBSLG00000006190) #23	parpbp (ENSBSLG00000006209) #24	pmch (ENSBSLG00000006216) #25	igf1 (ENSBSLG00000006224) #26	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250) #29	cry1a (ENSBSLG00000007173) #30	syt10 (ENSBSLG00000007302) #33	ENSBSLG00000007321 #34	cyb5r3 (ENSBSLG00000007400) #35	syt1a (ENSBSLG00000007799) #36	pawr (ENSBSLG00000007919) #37	ppp1r12a (ENSBSLG00000007997)	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938)
Zig-zag eel	MODERN SPECIES	15	ndufa12 (ENSMAMG00000027238) #7	fgd6 (ENSMAMG00000017007) #8	vezt (ENSMAMG00000016818) #9	METAP2 (ENSMAMG00000016805) #10	USP44 (ENSMAMG00000016772) #11	ntn4 (ENSMAMG00000016733) #12	SNRPF (ENSMAMG00000016593) #13	amdhd1 (ENSMAMG00000016384) #14	ENSMAMG00000026753 #15	ENSMAMG00000016348 #16	klhl42 (ENSMAMG00000016338) #17	ENSMAMG00000016311 #18	itfg2 (ENSMAMG00000016273) #19	ENSMAMG00000016256 #20	pah (ENSMAMG00000016220) #21	th2 (ENSMAMG00000016040) #22	nup37 (ENSMAMG00000016017) #23	parpbp (ENSMAMG00000016003) #24	pmch (ENSMAMG00000015727) #25	igf1 (ENSMAMG00000015704) #26	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616) #29	ENSMAMG00000015580 #30	tnnt2c (ENSMAMG00000015546) #32	ENSMAMG00000015509 #33	ENSMAMG00000024270 #33	ENSMAMG00000015433 #34	ENSMAMG00000015393 #35	ENSMAMG00000015373 #36	ENSMAMG00000015337 #37	ppp1r12a (ENSMAMG00000015240)