Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Turbot	MODERN SPECIES	11	ndufa12 (ENSSMAG00000005726) #7	fgd6 (ENSSMAG00000005702) #8	vezt (ENSSMAG00000028160) #9	METAP2 (ENSSMAG00000005667) #10	USP44 (ENSSMAG00000005649) #11	ntn4 (ENSSMAG00000005605) #12	SNRPF (ENSSMAG00000005533) #13	amdhd1 (ENSSMAG00000005484) #14	ENSSMAG00000005457 #15	ENSSMAG00000005360 #16	klhl42 (ENSSMAG00000005334) #17	ENSSMAG00000022137 #18	itfg2 (ENSSMAG00000005257) #19	ENSSMAG00000005248 #20	pah (ENSSMAG00000005207) #21	th2 (ENSSMAG00000005181) #22	nup37 (ENSSMAG00000005160) #23	parpbp (ENSSMAG00000005145) #24	pmch (ENSSMAG00000022672) #25	igf1 (ENSSMAG00000005115) #26	ENSSMAG00000030625 #27	ENSSMAG00000005081 #28	btbd11a (ENSSMAG00000005012) #29	ENSSMAG00000004964 #30	ENSSMAG00000005003 #31	tnnt2c (ENSSMAG00000004942) #32	ENSSMAG00000004931 #33	ENSSMAG00000004880 #34	ENSSMAG00000004819 #35	ENSSMAG00000004787 #36	ENSSMAG00000004775 #37
Tongue sole	MODERN SPECIES	18	pawr (ENSCSEG00000004529) #37	syt1a (ENSCSEG00000004537) #36	cyb5r3 (ENSCSEG00000004558) #35	ENSCSEG00000004570 #34	syt10 (ENSCSEG00000004582) #33	MTERF2 (ENSCSEG00000004606) #31	cry1a (ENSCSEG00000004597) #30	amdhd1 (ENSCSEG00000004613) #14	tspan9b (ENSCSEG00000004608) #15	elapor2b (ENSCSEG00000004623) #16	klhl42 (ENSCSEG00000004627) #17	nrip2 (ENSCSEG00000004633) #18	ENSCSEG00000004636	ascl1a (ENSCSEG00000004639) #20	pah (ENSCSEG00000004644) #21	th2 (ENSCSEG00000004662) #22	nup37 (ENSCSEG00000004667) #23	parpbp (ENSCSEG00000004674) #24	ENSCSEG00000004687	igf1 (ENSCSEG00000004697) #26	ENSCSEG00000004721 #28	btbd11a (ENSCSEG00000004735) #29	snrpf (ENSCSEG00000004748) #13	ntn4 (ENSCSEG00000004754) #12	usp44 (ENSCSEG00000004765) #11	metap2b (ENSCSEG00000004778) #10	vezt (ENSCSEG00000004802) #9	fgd6 (ENSCSEG00000004819) #8	ENSCSEG00000004837	TMCC3 (ENSCSEG00000005859)	eri1 (ENSCSEG00000005863)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00390000018424	ENSGT01010000222336.b.a.b.a	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00390000017998	ENSGT00940000157998
Greater amberjack	MODERN SPECIES	60	ndufa12 (ENSSDUG00000016121) #7	fgd6 (ENSSDUG00000016132) #8	vezt (ENSSDUG00000016162) #9	metap2b (ENSSDUG00000016178) #10	usp44 (ENSSDUG00000016194) #11	ntn4 (ENSSDUG00000016238) #12	snrpf (ENSSDUG00000016283) #13	amdhd1 (ENSSDUG00000016290) #14	tspan9b (ENSSDUG00000016318) #15	elapor2b (ENSSDUG00000016349) #16	klhl42 (ENSSDUG00000016448) #17	nrip2 (ENSSDUG00000016462) #18	itfg2 (ENSSDUG00000016493) #19	ascl1a (ENSSDUG00000016538) #20	pah (ENSSDUG00000016548) #21	th2 (ENSSDUG00000016577) #22	nup37 (ENSSDUG00000016615) #23	parpbp (ENSSDUG00000016645) #24	pmch (ENSSDUG00000016677) #25	igf1 (ENSSDUG00000016698) #26	ENSSDUG00000016734 #28	btbd11a (ENSSDUG00000016744) #29	cry1a (ENSSDUG00000016784) #30	MTERF2 (ENSSDUG00000016802) #31	ENSSDUG00000016804	acot14 (ENSSDUG00000016832)	AVPR1A (ENSSDUG00000016871)	srgap1b (ENSSDUG00000017062)	kics2 (ENSSDUG00000017120)	TMEM19 (ENSSDUG00000017135)	rab3ip (ENSSDUG00000017171)
Yellowtail amberjack	MODERN SPECIES	2989			vezt (ENSSLDG00000005374) #9	metap2b (ENSSLDG00000005344) #10	usp44 (ENSSLDG00000005301) #11	ntn4 (ENSSLDG00000005247) #12	snrpf (ENSSLDG00000005119) #13	amdhd1 (ENSSLDG00000005072) #14	tspan9b (ENSSLDG00000004989) #15	elapor2b (ENSSLDG00000004921) #16	klhl42 (ENSSLDG00000004894) #17	nrip2 (ENSSLDG00000004872) #18	itfg2 (ENSSLDG00000004809) #19	ascl1a (ENSSLDG00000004770) #20	pah (ENSSLDG00000004715) #21	th2 (ENSSLDG00000004650) #22	nup37 (ENSSLDG00000004590) #23	parpbp (ENSSLDG00000004566) #24	pmch (ENSSLDG00000004554) #25	igf1 (ENSSLDG00000004529) #26	ENSSLDG00000004485 #28	btbd11a (ENSSLDG00000004377) #29	MTERF2 (ENSSLDG00000004358) #31	cry1a (ENSSLDG00000004294) #30	ENSSLDG00000004226	acot14 (ENSSLDG00000004148)	AVPR1A (ENSSLDG00000004134)	srgap1b (ENSSLDG00000004008)
Barramundi perch	MODERN SPECIES	292	fgd6 (ENSLCAG00010026885) #8	ENSLCAG00010026889	vezt (ENSLCAG00010026891) #9	metap2b (ENSLCAG00010026892) #10	usp44 (ENSLCAG00010026893) #11	ntn4 (ENSLCAG00010026894) #12	snrpf (ENSLCAG00010026895) #13	amdhd1 (ENSLCAG00010026896) #14	klhl42 (ENSLCAG00010026897) #17	elapor2b (ENSLCAG00010026919) #16	tspan9b (ENSLCAG00010026930) #15	nrip2 (ENSLCAG00010026932) #18	itfg2 (ENSLCAG00010026936) #19	ascl1a (ENSLCAG00010026942) #20	pah (ENSLCAG00010026972) #21	th2 (ENSLCAG00010027029) #22	nup37 (ENSLCAG00010027047) #23	parpbp (ENSLCAG00010027051) #24	pmch (ENSLCAG00010027053) #25	igf1 (ENSLCAG00010027059) #26	ENSLCAG00010027073 #28	ENSLCAG00010027076	btbd11a (ENSLCAG00010027077) #29	cry1a (ENSLCAG00010027085) #30	MTERF2 (ENSLCAG00010027093) #31	tnnt2c (ENSLCAG00010027095) #32	syt10 (ENSLCAG00010027097) #33
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Climbing perch	MODERN SPECIES	14	ndufa12 (ENSATEG00000022496) #7	fgd6 (ENSATEG00000022513) #8	vezt (ENSATEG00000022542) #9	METAP2 (ENSATEG00000022567) #10	USP44 (ENSATEG00000022583) #11	ntn4 (ENSATEG00000022608) #12	SNRPF (ENSATEG00000022625) #13	amdhd1 (ENSATEG00000022667) #14	ENSATEG00000022678 #15	ENSATEG00000022701 #16	klhl42 (ENSATEG00000022766) #17	ENSATEG00000022782 #18	itfg2 (ENSATEG00000022806) #19	ENSATEG00000022825 #20	pah (ENSATEG00000022831) #21	th2 (ENSATEG00000022864) #22	NUP37 (ENSATEG00000022933) #23	parpbp (ENSATEG00000022956) #24	pmch (ENSATEG00000022998) #25	igf1 (ENSATEG00000023026) #26	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064) #29	ENSATEG00000023083 #30	tnnt2c (ENSATEG00000023096) #32	ENSATEG00000023107 #33	ENSATEG00000026602 #33	ENSATEG00000023121 #34	ENSATEG00000023152 #35	ENSATEG00000023170 #36	ENSATEG00000023210 #37
Siamese fighting fish	MODERN SPECIES	20	fgf6b (ENSBSLG00000005740)	ndufa12 (ENSBSLG00000005750) #7	fgd6 (ENSBSLG00000005771) #8	vezt (ENSBSLG00000005881) #9	metap2b (ENSBSLG00000005901) #10	usp44 (ENSBSLG00000005978) #11	NTN4 (ENSBSLG00000005981) #12	amdhd1 (ENSBSLG00000005996) #14	tspan9b (ENSBSLG00000006012) #15	elapor2b (ENSBSLG00000006020) #16	klhl42 (ENSBSLG00000006090) #17	nrip2 (ENSBSLG00000006093) #18	itfg2 (ENSBSLG00000006095) #19	ascl1a (ENSBSLG00000006101) #20	pah (ENSBSLG00000006111) #21	th2 (ENSBSLG00000006132) #22	nup37 (ENSBSLG00000006190) #23	parpbp (ENSBSLG00000006209) #24	pmch (ENSBSLG00000006216) #25	igf1 (ENSBSLG00000006224) #26	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250) #29	cry1a (ENSBSLG00000007173) #30	syt10 (ENSBSLG00000007302) #33	ENSBSLG00000007321 #34	cyb5r3 (ENSBSLG00000007400) #35	syt1a (ENSBSLG00000007799) #36	pawr (ENSBSLG00000007919) #37	ppp1r12a (ENSBSLG00000007997)	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938)
Zig-zag eel	MODERN SPECIES	15	ndufa12 (ENSMAMG00000027238) #7	fgd6 (ENSMAMG00000017007) #8	vezt (ENSMAMG00000016818) #9	METAP2 (ENSMAMG00000016805) #10	USP44 (ENSMAMG00000016772) #11	ntn4 (ENSMAMG00000016733) #12	SNRPF (ENSMAMG00000016593) #13	amdhd1 (ENSMAMG00000016384) #14	ENSMAMG00000026753 #15	ENSMAMG00000016348 #16	klhl42 (ENSMAMG00000016338) #17	ENSMAMG00000016311 #18	itfg2 (ENSMAMG00000016273) #19	ENSMAMG00000016256 #20	pah (ENSMAMG00000016220) #21	th2 (ENSMAMG00000016040) #22	nup37 (ENSMAMG00000016017) #23	parpbp (ENSMAMG00000016003) #24	pmch (ENSMAMG00000015727) #25	igf1 (ENSMAMG00000015704) #26	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616) #29	ENSMAMG00000015580 #30	tnnt2c (ENSMAMG00000015546) #32	ENSMAMG00000015509 #33	ENSMAMG00000024270 #33	ENSMAMG00000015433 #34	ENSMAMG00000015393 #35	ENSMAMG00000015373 #36	ENSMAMG00000015337 #37	ppp1r12a (ENSMAMG00000015240)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406.d #37
Fugu	MODERN SPECIES	9	fgd6 (ENSTRUG00000022013) #8	vezt (ENSTRUG00000015078) #9	metap2b (ENSTRUG00000015010) #10	usp44 (ENSTRUG00000021755) #11	ntn4 (ENSTRUG00000014966) #12	ENSTRUG00000014956	amdhd1 (ENSTRUG00000014921) #14	tspan9b (ENSTRUG00000014879) #15	ENSTRUG00000027986	elapor2b (ENSTRUG00000014753) #16	klhl42 (ENSTRUG00000014743) #17	nrip2 (ENSTRUG00000023306) #18	itfg2 (ENSTRUG00000014649) #19	ascl1a (ENSTRUG00000012801) #20	pah (ENSTRUG00000014530) #21	th2 (ENSTRUG00000014467) #22	nup37 (ENSTRUG00000014428) #23	parpbp (ENSTRUG00000014361) #24	pmch (ENSTRUG00000014356) #25	igf1 (ENSTRUG00000022135) #26	ENSTRUG00000025881	btbd11a (ENSTRUG00000014167) #29	cry1a (ENSTRUG00000014032) #30	MTERF2 (ENSTRUG00000014030) #31	tnnt2c (ENSTRUG00000014014) #32	syt10 (ENSTRUG00000013939) #33	ENSTRUG00000013873 #34	cyb5r3 (ENSTRUG00000020838) #35	syt1a (ENSTRUG00000013727) #36	pawr (ENSTRUG00000013694) #37	ppp1r12a (ENSTRUG00000013358)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000012681	eri1 (ENSTNIG00000012680)	TMCC3 (ENSTNIG00000012679)	ndufa12 (ENSTNIG00000012678) #7	fgd6 (ENSTNIG00000012677) #8	vezt (ENSTNIG00000012676) #9	metap2b (ENSTNIG00000012675) #10	usp44 (ENSTNIG00000012674) #11	ntn4 (ENSTNIG00000012673) #12	snrpf (ENSTNIG00000012672) #13	amdhd1 (ENSTNIG00000012671) #14	tspan9b (ENSTNIG00000012670) #15	elapor2b (ENSTNIG00000012669) #16	klhl42 (ENSTNIG00000012668) #17	pah (ENSTNIG00000012667) #21	th2 (ENSTNIG00000012666) #22	nup37 (ENSTNIG00000012665) #23	parpbp (ENSTNIG00000012664) #24	pmch (ENSTNIG00000001324) #25	igf1 (ENSTNIG00000012663) #26	ENSTNIG00000000656	btbd11a (ENSTNIG00000012662) #29	ENSTNIG00000012661	cry1a (ENSTNIG00000012660) #30	tnnt2c (ENSTNIG00000012659) #32	syt10 (ENSTNIG00000012658) #33	ENSTNIG00000012657 #34	cyb5r3 (ENSTNIG00000012656) #35	syt1a (ENSTNIG00000012655) #36	ENSTNIG00000012654 #37	pawr (ENSTNIG00000012653) #37
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Ballan wrasse	MODERN SPECIES	262	ENSLBEG00000008598	fgd6 (ENSLBEG00000008633) #8	vezt (ENSLBEG00000008667) #9	metap2b (ENSLBEG00000008691) #10	usp44 (ENSLBEG00000008728) #11	ntn4 (ENSLBEG00000008777) #12	snrpf (ENSLBEG00000008800) #13	amdhd1 (ENSLBEG00000008827) #14	tspan9b (ENSLBEG00000008871) #15	elapor2b (ENSLBEG00000008923) #16	klhl42 (ENSLBEG00000008995) #17	nrip2 (ENSLBEG00000009030) #18	itfg2 (ENSLBEG00000009067) #19	ascl1a (ENSLBEG00000009122) #20	pah (ENSLBEG00000009148) #21	th2 (ENSLBEG00000009302) #22	nup37 (ENSLBEG00000009795) #23	parpbp (ENSLBEG00000009853) #24	ENSLBEG00000009881	igf1 (ENSLBEG00000009904) #26	ENSLBEG00000009921	ENSLBEG00000009958	ENSLBEG00000010011 #31	cry1a (ENSLBEG00000010050) #30	btbd11a (ENSLBEG00000010130) #29	ENSLBEG00000010191	ccnd2b (ENSLBEG00000010215)	tigarb (ENSLBEG00000010244)	fgf23 (ENSLBEG00000010263)	fgf6b (ENSLBEG00000010310)	rad51ap1 (ENSLBEG00000010326)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
European seabass	MODERN SPECIES	23	myf6 (ENSDLAG00005034355)	ENSDLAG00005022222	ppp1r12a (ENSDLAG00005028115)	PAWR (ENSDLAG00005022241) #37	ENSDLAG00005022245 #36	ENSDLAG00005022253 #35	ENSDLAG00005022300 #34	ENSDLAG00005022430 #33	ENSDLAG00005022452 #32	ENSDLAG00005022457 #15	ENSDLAG00005022472 #16	ENSDLAG00005022693 #17	ENSDLAG00005027036 #19	ENSDLAG00005022698 #20	pah (ENSDLAG00005022732) #21	th2 (ENSDLAG00005023520) #22	NUP37 (ENSDLAG00005023603) #23	parpbp (ENSDLAG00005023617) #24	pmch (ENSDLAG00005023620) #25	igf1 (ENSDLAG00005023625) #26	ENSDLAG00005026892	ENSDLAG00005027813	ENSDLAG00005023668 #29	ENSDLAG00005023868 #30	ENSDLAG00005023981 #31	ENSDLAG00005028222	ENSDLAG00005024007	ENSDLAG00005024264	ENSDLAG00005024687	TMCC3 (ENSDLAG00005034671)	ndufa12 (ENSDLAG00005024691) #7
Large yellow croaker	MODERN SPECIES	491	ndufa12 (ENSLCRG00005014995) #7	fgd6 (ENSLCRG00005015006) #8	vezt (ENSLCRG00005015125) #9	metap2b (ENSLCRG00005015126) #10	usp44 (ENSLCRG00005015128) #11	ntn4 (ENSLCRG00005015129) #12	snrpf (ENSLCRG00005015130) #13	amdhd1 (ENSLCRG00005015131) #14	tspan9b (ENSLCRG00005015133) #15	elapor2b (ENSLCRG00005015142) #16	klhl42 (ENSLCRG00005015458) #17	itfg2 (ENSLCRG00005015463) #19	nrip2 (ENSLCRG00005015516) #18	ascl1a (ENSLCRG00005015517) #20	pah (ENSLCRG00005015533) #21	th2 (ENSLCRG00005017198) #22	nup37 (ENSLCRG00005017388) #23	parpbp (ENSLCRG00005017399) #24	ENSLCRG00005017401	igf1 (ENSLCRG00005017409) #26	ENSLCRG00005017539	btbd11a (ENSLCRG00005017547) #29	cry1a (ENSLCRG00005017690) #30	MTERF2 (ENSLCRG00005017798) #31	tnnt2c (ENSLCRG00005017799) #32	syt10 (ENSLCRG00005017801) #33	ENSLCRG00005017806 #34	cyb5r3 (ENSLCRG00005017871) #35	syt1a (ENSLCRG00005018056) #36	ENSLCRG00005018060	ENSLCRG00005018062
Gilthead seabream	MODERN SPECIES	5	usp44 (ENSSAUG00010018152) #11	ntn4 (ENSSAUG00010018150) #12	snrpf (ENSSAUG00010018146) #13	amdhd1 (ENSSAUG00010018144) #14	tspan9b (ENSSAUG00010018138) #15	ENSSAUG00010018130	ENSSAUG00010018119	ENSSAUG00010018116	elapor2b (ENSSAUG00010017867) #16	klhl42 (ENSSAUG00010017856) #17	nrip2 (ENSSAUG00010017853) #18	itfg2 (ENSSAUG00010017851) #19	ascl1a (ENSSAUG00010017842) #20	ascl1a (ENSSAUG00010017839) #20	pah (ENSSAUG00010015550) #21	th2 (ENSSAUG00010015244) #22	nup37 (ENSSAUG00010015237) #23	parpbp (ENSSAUG00010015235) #24	pmch (ENSSAUG00010015234) #25	igf1 (ENSSAUG00010015109) #26	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766) #29	cry1a (ENSSAUG00010012268) #30	ENSSAUG00010012243 #31	tnnt2c (ENSSAUG00010012240) #32	syt10 (ENSSAUG00010012236) #33	ENSSAUG00010020501 #34	cyb5r3 (ENSSAUG00010020421) #35	syt1a (ENSSAUG00010020377) #36	pawr (ENSSAUG00010020373) #37	ppp1r12a (ENSSAUG00010020166)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Lumpfish	MODERN SPECIES	15	ndufa12 (ENSCLMG00005018894) #7	fgd6 (ENSCLMG00005018893) #8	vezt (ENSCLMG00005018882) #9	metap2b (ENSCLMG00005018879) #10	usp44 (ENSCLMG00005018877) #11	ntn4 (ENSCLMG00005018876) #12	snrpf (ENSCLMG00005018875) #13	amdhd1 (ENSCLMG00005018874) #14	tspan9b (ENSCLMG00005018873) #15	elapor2b (ENSCLMG00005018872) #16	klhl42 (ENSCLMG00005018871) #17	nrip2 (ENSCLMG00005018870) #18	itfg2 (ENSCLMG00005018867) #19	ascl1a (ENSCLMG00005018865) #20	pah (ENSCLMG00005018810) #21	th2 (ENSCLMG00005018807) #22	nup37 (ENSCLMG00005018805) #23	parpbp (ENSCLMG00005018804) #24	ENSCLMG00005018803	igf1 (ENSCLMG00005018801) #26	ENSCLMG00005018800 #28	ENSCLMG00005018799	ENSCLMG00005018798	ABTB3 (ENSCLMG00005018797) #29	cry1a (ENSCLMG00005018166) #30	ENSCLMG00005018160	apaf1 (ENSCLMG00005016672)	anks1b (ENSCLMG00005016584)	uhrf1bp1l (ENSCLMG00005016536)	ENSCLMG00005016528	ENSCLMG00005016527
Stickleback	MODERN SPECIES	3	ENSGACG00000020067	fgd6 (ENSGACG00000020065) #8	ENSGACG00000020064	vezt (ENSGACG00000020060) #9	metap2b (ENSGACG00000020059) #10	usp44 (ENSGACG00000020058) #11	ntn4 (ENSGACG00000020056) #12	snrpf (ENSGACG00000020055) #13	amdhd1 (ENSGACG00000020054) #14	tspan9b (ENSGACG00000020053) #15	elapor2b (ENSGACG00000020052) #16	klhl42 (ENSGACG00000020051) #17	nrip2 (ENSGACG00000020050) #18	itfg2 (ENSGACG00000020049) #19	ascl1a (ENSGACG00000020048) #20	th2 (ENSGACG00000020047) #22	nup37 (ENSGACG00000020046) #23	parpbp (ENSGACG00000020045) #24	ENSGACG00000020044	igf1 (ENSGACG00000020042) #26	ENSGACG00000020041	btbd11a (ENSGACG00000020040) #29	cry1a (ENSGACG00000020037) #30	ENSGACG00000020036 #31	tnnt2c (ENSGACG00000020034) #32	syt10 (ENSGACG00000020031) #33	ENSGACG00000020026 #34	cyb5r3 (ENSGACG00000020019) #35	syt1a (ENSGACG00000020017) #36	pawr (ENSGACG00000020015) #37	ppp1r12a (ENSGACG00000020012)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Pike perch	MODERN SPECIES	28	ndufa12 (ENSSLUG00000007433) #7	fgd6 (ENSSLUG00000007421) #8	vezt (ENSSLUG00000007416) #9	metap2b (ENSSLUG00000007275) #10	usp44 (ENSSLUG00000007245) #11	ntn4 (ENSSLUG00000007235) #12	snrpf (ENSSLUG00000007230) #13	amdhd1 (ENSSLUG00000007223) #14	tspan9b (ENSSLUG00000007211) #15	elapor2b (ENSSLUG00000007126) #16	klhl42 (ENSSLUG00000007097) #17	nrip2 (ENSSLUG00000007092) #18	itfg2 (ENSSLUG00000007037) #19	ascl1a (ENSSLUG00000007018) #20	pah (ENSSLUG00000005452) #21	th2 (ENSSLUG00000005335) #22	nup37 (ENSSLUG00000005270) #23	parpbp (ENSSLUG00000005238) #24	pmch (ENSSLUG00000005227) #25	IGF-I (ENSSLUG00000004805) #26	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616) #29	cry1a (ENSSLUG00000003675) #30	MTERF2 (ENSSLUG00000003583) #31	syt10 (ENSSLUG00000003569) #33	ENSSLUG00000003558 #33	ENSSLUG00000002793 #34	cyb5r3 (ENSSLUG00000002598) #35	syt1a (ENSSLUG00000002503) #36	pawr (ENSSLUG00000002488) #37	ppp1r12a (ENSSLUG00000002356)
Channel bull blenny	MODERN SPECIES	15	metap2b (ENSCGOG00000022870) #10	ENSCGOG00000022865	usp44 (ENSCGOG00000022864) #11	ntn4 (ENSCGOG00000022863) #12	snrpf (ENSCGOG00000022853) #13	amdhd1 (ENSCGOG00000022850) #14	snrpf (ENSCGOG00000022846) #13	amdhd1 (ENSCGOG00000022844) #14	tspan9b (ENSCGOG00000022823) #15	elapor2b (ENSCGOG00000022556) #16	klhl42 (ENSCGOG00000022519) #17	nrip2 (ENSCGOG00000022518) #18	itfg2 (ENSCGOG00000022503) #19	ascl1a (ENSCGOG00000022495) #20	pah (ENSCGOG00000021599) #21	th2 (ENSCGOG00000021420) #22	nup37 (ENSCGOG00000021365) #23	parpbp (ENSCGOG00000021360) #24	pmch (ENSCGOG00000021359) #25	igf1 (ENSCGOG00000021110) #26	ENSCGOG00000021090	btbd11a (ENSCGOG00000020950) #29	MTERF2 (ENSCGOG00000020933) #31	CD9 (ENSCGOG00000020917)	ENSCGOG00000020908	acot14 (ENSCGOG00000020865)	ENSCGOG00000020863	ssbp1 (ENSCGOG00000020859)	creb3l2 (ENSCGOG00000020856)	ENSCGOG00000018998	ENSCGOG00000018962