Euteleosteomorpha	ANCESTRAL SPECIES	30	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00650000094663	ENSGT00390000002730.e.b	ENSGT00950000183113.b.b.c.b	ENSGT00940000160161.e.a
Acanthomorphata	ANCESTRAL SPECIES	47	ENSGT00940000156334.b ##8	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183052.b.c.b.a	ENSGT00940000158003	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35
Euacanthomorphacea	ANCESTRAL SPECIES	18	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Percomorphaceae	ANCESTRAL SPECIES	19	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000175478	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Percomorphaceae_B	ANCESTRAL SPECIES	21	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Carangaria	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Pleuronectoidei	ANCESTRAL SPECIES	16	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Turbot	MODERN SPECIES	11	ndufa12 (ENSSMAG00000005726) #7	fgd6 (ENSSMAG00000005702) #8	vezt (ENSSMAG00000028160) #9	METAP2 (ENSSMAG00000005667) #10	USP44 (ENSSMAG00000005649) #11	ntn4 (ENSSMAG00000005605) #12	SNRPF (ENSSMAG00000005533) #13	amdhd1 (ENSSMAG00000005484) #14	ENSSMAG00000005457 #15	ENSSMAG00000005360 #16	klhl42 (ENSSMAG00000005334) #17	ENSSMAG00000022137 #18	itfg2 (ENSSMAG00000005257) #19	ENSSMAG00000005248 #20	pah (ENSSMAG00000005207) #21	th2 (ENSSMAG00000005181) #22	nup37 (ENSSMAG00000005160) #23	parpbp (ENSSMAG00000005145) #24	pmch (ENSSMAG00000022672) #25	igf1 (ENSSMAG00000005115) #26	ENSSMAG00000030625 #27	ENSSMAG00000005081 #28	btbd11a (ENSSMAG00000005012) #29	ENSSMAG00000004964 #30	ENSSMAG00000005003 #31	tnnt2c (ENSSMAG00000004942) #32	ENSSMAG00000004931 #33	ENSSMAG00000004880 #34	ENSSMAG00000004819 #35	ENSSMAG00000004787 #36	ENSSMAG00000004775 #37
Tongue sole	MODERN SPECIES	18	pawr (ENSCSEG00000004529) #37	syt1a (ENSCSEG00000004537) #36	cyb5r3 (ENSCSEG00000004558) #35	ENSCSEG00000004570 #34	syt10 (ENSCSEG00000004582) #33	MTERF2 (ENSCSEG00000004606) #31	cry1a (ENSCSEG00000004597) #30	amdhd1 (ENSCSEG00000004613) #14	tspan9b (ENSCSEG00000004608) #15	elapor2b (ENSCSEG00000004623) #16	klhl42 (ENSCSEG00000004627) #17	nrip2 (ENSCSEG00000004633) #18	ENSCSEG00000004636	ascl1a (ENSCSEG00000004639) #20	pah (ENSCSEG00000004644) #21	th2 (ENSCSEG00000004662) #22	nup37 (ENSCSEG00000004667) #23	parpbp (ENSCSEG00000004674) #24	ENSCSEG00000004687	igf1 (ENSCSEG00000004697) #26	ENSCSEG00000004721 #28	btbd11a (ENSCSEG00000004735) #29	snrpf (ENSCSEG00000004748) #13	ntn4 (ENSCSEG00000004754) #12	usp44 (ENSCSEG00000004765) #11	metap2b (ENSCSEG00000004778) #10	vezt (ENSCSEG00000004802) #9	fgd6 (ENSCSEG00000004819) #8	ENSCSEG00000004837	TMCC3 (ENSCSEG00000005859)	eri1 (ENSCSEG00000005863)
Carangaria_A	ANCESTRAL SPECIES	21	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Seriola	ANCESTRAL SPECIES	9	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00390000018424	ENSGT01010000222336.b.a.b.a	ENSGT01050000244882.a.a.a.a.b	ENSGT00950000182824.a.a.a.a.b	ENSGT00390000009583	ENSGT00390000017998	ENSGT00940000157998
Greater amberjack	MODERN SPECIES	60	ndufa12 (ENSSDUG00000016121) #7	fgd6 (ENSSDUG00000016132) #8	vezt (ENSSDUG00000016162) #9	metap2b (ENSSDUG00000016178) #10	usp44 (ENSSDUG00000016194) #11	ntn4 (ENSSDUG00000016238) #12	snrpf (ENSSDUG00000016283) #13	amdhd1 (ENSSDUG00000016290) #14	tspan9b (ENSSDUG00000016318) #15	elapor2b (ENSSDUG00000016349) #16	klhl42 (ENSSDUG00000016448) #17	nrip2 (ENSSDUG00000016462) #18	itfg2 (ENSSDUG00000016493) #19	ascl1a (ENSSDUG00000016538) #20	pah (ENSSDUG00000016548) #21	th2 (ENSSDUG00000016577) #22	nup37 (ENSSDUG00000016615) #23	parpbp (ENSSDUG00000016645) #24	pmch (ENSSDUG00000016677) #25	igf1 (ENSSDUG00000016698) #26	ENSSDUG00000016734 #28	btbd11a (ENSSDUG00000016744) #29	cry1a (ENSSDUG00000016784) #30	MTERF2 (ENSSDUG00000016802) #31	ENSSDUG00000016804	acot14 (ENSSDUG00000016832)	AVPR1A (ENSSDUG00000016871)	srgap1b (ENSSDUG00000017062)	kics2 (ENSSDUG00000017120)	TMEM19 (ENSSDUG00000017135)	rab3ip (ENSSDUG00000017171)
Yellowtail amberjack	MODERN SPECIES	2989			vezt (ENSSLDG00000005374) #9	metap2b (ENSSLDG00000005344) #10	usp44 (ENSSLDG00000005301) #11	ntn4 (ENSSLDG00000005247) #12	snrpf (ENSSLDG00000005119) #13	amdhd1 (ENSSLDG00000005072) #14	tspan9b (ENSSLDG00000004989) #15	elapor2b (ENSSLDG00000004921) #16	klhl42 (ENSSLDG00000004894) #17	nrip2 (ENSSLDG00000004872) #18	itfg2 (ENSSLDG00000004809) #19	ascl1a (ENSSLDG00000004770) #20	pah (ENSSLDG00000004715) #21	th2 (ENSSLDG00000004650) #22	nup37 (ENSSLDG00000004590) #23	parpbp (ENSSLDG00000004566) #24	pmch (ENSSLDG00000004554) #25	igf1 (ENSSLDG00000004529) #26	ENSSLDG00000004485 #28	btbd11a (ENSSLDG00000004377) #29	MTERF2 (ENSSLDG00000004358) #31	cry1a (ENSSLDG00000004294) #30	ENSSLDG00000004226	acot14 (ENSSLDG00000004148)	AVPR1A (ENSSLDG00000004134)	srgap1b (ENSSLDG00000004008)
Barramundi perch	MODERN SPECIES	292	fgd6 (ENSLCAG00010026885) #8	ENSLCAG00010026889	vezt (ENSLCAG00010026891) #9	metap2b (ENSLCAG00010026892) #10	usp44 (ENSLCAG00010026893) #11	ntn4 (ENSLCAG00010026894) #12	snrpf (ENSLCAG00010026895) #13	amdhd1 (ENSLCAG00010026896) #14	klhl42 (ENSLCAG00010026897) #17	elapor2b (ENSLCAG00010026919) #16	tspan9b (ENSLCAG00010026930) #15	nrip2 (ENSLCAG00010026932) #18	itfg2 (ENSLCAG00010026936) #19	ascl1a (ENSLCAG00010026942) #20	pah (ENSLCAG00010026972) #21	th2 (ENSLCAG00010027029) #22	nup37 (ENSLCAG00010027047) #23	parpbp (ENSLCAG00010027051) #24	pmch (ENSLCAG00010027053) #25	igf1 (ENSLCAG00010027059) #26	ENSLCAG00010027073 #28	ENSLCAG00010027076	btbd11a (ENSLCAG00010027077) #29	cry1a (ENSLCAG00010027085) #30	MTERF2 (ENSLCAG00010027093) #31	tnnt2c (ENSLCAG00010027095) #32	syt10 (ENSLCAG00010027097) #33
Anabantaria	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000163513	ENSGT00950000183169.A.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Climbing perch	MODERN SPECIES	14	ndufa12 (ENSATEG00000022496) #7	fgd6 (ENSATEG00000022513) #8	vezt (ENSATEG00000022542) #9	METAP2 (ENSATEG00000022567) #10	USP44 (ENSATEG00000022583) #11	ntn4 (ENSATEG00000022608) #12	SNRPF (ENSATEG00000022625) #13	amdhd1 (ENSATEG00000022667) #14	ENSATEG00000022678 #15	ENSATEG00000022701 #16	klhl42 (ENSATEG00000022766) #17	ENSATEG00000022782 #18	itfg2 (ENSATEG00000022806) #19	ENSATEG00000022825 #20	pah (ENSATEG00000022831) #21	th2 (ENSATEG00000022864) #22	NUP37 (ENSATEG00000022933) #23	parpbp (ENSATEG00000022956) #24	pmch (ENSATEG00000022998) #25	igf1 (ENSATEG00000023026) #26	ENSATEG00000023044	ENSATEG00000029039	btbd11a (ENSATEG00000023064) #29	ENSATEG00000023083 #30	tnnt2c (ENSATEG00000023096) #32	ENSATEG00000023107 #33	ENSATEG00000026602 #33	ENSATEG00000023121 #34	ENSATEG00000023152 #35	ENSATEG00000023170 #36	ENSATEG00000023210 #37
Siamese fighting fish	MODERN SPECIES	20	fgf6b (ENSBSLG00000005740)	ndufa12 (ENSBSLG00000005750) #7	fgd6 (ENSBSLG00000005771) #8	vezt (ENSBSLG00000005881) #9	metap2b (ENSBSLG00000005901) #10	usp44 (ENSBSLG00000005978) #11	NTN4 (ENSBSLG00000005981) #12	amdhd1 (ENSBSLG00000005996) #14	tspan9b (ENSBSLG00000006012) #15	elapor2b (ENSBSLG00000006020) #16	klhl42 (ENSBSLG00000006090) #17	nrip2 (ENSBSLG00000006093) #18	itfg2 (ENSBSLG00000006095) #19	ascl1a (ENSBSLG00000006101) #20	pah (ENSBSLG00000006111) #21	th2 (ENSBSLG00000006132) #22	nup37 (ENSBSLG00000006190) #23	parpbp (ENSBSLG00000006209) #24	pmch (ENSBSLG00000006216) #25	igf1 (ENSBSLG00000006224) #26	ENSBSLG00000006232	btbd11a (ENSBSLG00000006250) #29	cry1a (ENSBSLG00000007173) #30	syt10 (ENSBSLG00000007302) #33	ENSBSLG00000007321 #34	cyb5r3 (ENSBSLG00000007400) #35	syt1a (ENSBSLG00000007799) #36	pawr (ENSBSLG00000007919) #37	ppp1r12a (ENSBSLG00000007997)	rps16 (ENSBSLG00000008793)	myf6 (ENSBSLG00000008938)
Zig-zag eel	MODERN SPECIES	15	ndufa12 (ENSMAMG00000027238) #7	fgd6 (ENSMAMG00000017007) #8	vezt (ENSMAMG00000016818) #9	METAP2 (ENSMAMG00000016805) #10	USP44 (ENSMAMG00000016772) #11	ntn4 (ENSMAMG00000016733) #12	SNRPF (ENSMAMG00000016593) #13	amdhd1 (ENSMAMG00000016384) #14	ENSMAMG00000026753 #15	ENSMAMG00000016348 #16	klhl42 (ENSMAMG00000016338) #17	ENSMAMG00000016311 #18	itfg2 (ENSMAMG00000016273) #19	ENSMAMG00000016256 #20	pah (ENSMAMG00000016220) #21	th2 (ENSMAMG00000016040) #22	nup37 (ENSMAMG00000016017) #23	parpbp (ENSMAMG00000016003) #24	pmch (ENSMAMG00000015727) #25	igf1 (ENSMAMG00000015704) #26	ENSMAMG00000015670	btbd11a (ENSMAMG00000015616) #29	ENSMAMG00000015580 #30	tnnt2c (ENSMAMG00000015546) #32	ENSMAMG00000015509 #33	ENSMAMG00000024270 #33	ENSMAMG00000015433 #34	ENSMAMG00000015393 #35	ENSMAMG00000015373 #36	ENSMAMG00000015337 #37	ppp1r12a (ENSMAMG00000015240)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Tetraodontidae	ANCESTRAL SPECIES	17	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406.d #37
Fugu	MODERN SPECIES	9	fgd6 (ENSTRUG00000022013) #8	vezt (ENSTRUG00000015078) #9	metap2b (ENSTRUG00000015010) #10	usp44 (ENSTRUG00000021755) #11	ntn4 (ENSTRUG00000014966) #12	ENSTRUG00000014956	amdhd1 (ENSTRUG00000014921) #14	tspan9b (ENSTRUG00000014879) #15	ENSTRUG00000027986	elapor2b (ENSTRUG00000014753) #16	klhl42 (ENSTRUG00000014743) #17	nrip2 (ENSTRUG00000023306) #18	itfg2 (ENSTRUG00000014649) #19	ascl1a (ENSTRUG00000012801) #20	pah (ENSTRUG00000014530) #21	th2 (ENSTRUG00000014467) #22	nup37 (ENSTRUG00000014428) #23	parpbp (ENSTRUG00000014361) #24	pmch (ENSTRUG00000014356) #25	igf1 (ENSTRUG00000022135) #26	ENSTRUG00000025881	btbd11a (ENSTRUG00000014167) #29	cry1a (ENSTRUG00000014032) #30	MTERF2 (ENSTRUG00000014030) #31	tnnt2c (ENSTRUG00000014014) #32	syt10 (ENSTRUG00000013939) #33	ENSTRUG00000013873 #34	cyb5r3 (ENSTRUG00000020838) #35	syt1a (ENSTRUG00000013727) #36	pawr (ENSTRUG00000013694) #37	ppp1r12a (ENSTRUG00000013358)
Tetraodon	MODERN SPECIES	11	ENSTNIG00000012681	eri1 (ENSTNIG00000012680)	TMCC3 (ENSTNIG00000012679)	ndufa12 (ENSTNIG00000012678) #7	fgd6 (ENSTNIG00000012677) #8	vezt (ENSTNIG00000012676) #9	metap2b (ENSTNIG00000012675) #10	usp44 (ENSTNIG00000012674) #11	ntn4 (ENSTNIG00000012673) #12	snrpf (ENSTNIG00000012672) #13	amdhd1 (ENSTNIG00000012671) #14	tspan9b (ENSTNIG00000012670) #15	elapor2b (ENSTNIG00000012669) #16	klhl42 (ENSTNIG00000012668) #17	pah (ENSTNIG00000012667) #21	th2 (ENSTNIG00000012666) #22	nup37 (ENSTNIG00000012665) #23	parpbp (ENSTNIG00000012664) #24	pmch (ENSTNIG00000001324) #25	igf1 (ENSTNIG00000012663) #26	ENSTNIG00000000656	btbd11a (ENSTNIG00000012662) #29	ENSTNIG00000012661	cry1a (ENSTNIG00000012660) #30	tnnt2c (ENSTNIG00000012659) #32	syt10 (ENSTNIG00000012658) #33	ENSTNIG00000012657 #34	cyb5r3 (ENSTNIG00000012656) #35	syt1a (ENSTNIG00000012655) #36	ENSTNIG00000012654 #37	pawr (ENSTNIG00000012653) #37
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Ballan wrasse	MODERN SPECIES	262	ENSLBEG00000008598	fgd6 (ENSLBEG00000008633) #8	vezt (ENSLBEG00000008667) #9	metap2b (ENSLBEG00000008691) #10	usp44 (ENSLBEG00000008728) #11	ntn4 (ENSLBEG00000008777) #12	snrpf (ENSLBEG00000008800) #13	amdhd1 (ENSLBEG00000008827) #14	tspan9b (ENSLBEG00000008871) #15	elapor2b (ENSLBEG00000008923) #16	klhl42 (ENSLBEG00000008995) #17	nrip2 (ENSLBEG00000009030) #18	itfg2 (ENSLBEG00000009067) #19	ascl1a (ENSLBEG00000009122) #20	pah (ENSLBEG00000009148) #21	th2 (ENSLBEG00000009302) #22	nup37 (ENSLBEG00000009795) #23	parpbp (ENSLBEG00000009853) #24	ENSLBEG00000009881	igf1 (ENSLBEG00000009904) #26	ENSLBEG00000009921	ENSLBEG00000009958	ENSLBEG00000010011 #31	cry1a (ENSLBEG00000010050) #30	btbd11a (ENSLBEG00000010130) #29	ENSLBEG00000010191	ccnd2b (ENSLBEG00000010215)	tigarb (ENSLBEG00000010244)	fgf23 (ENSLBEG00000010263)	fgf6b (ENSLBEG00000010310)	rad51ap1 (ENSLBEG00000010326)
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	22	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263491.a.b.a.a.a.a.b.s.b	ENSGT00400000022326.b.a.b.a.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
European seabass	MODERN SPECIES	23	myf6 (ENSDLAG00005034355)	ENSDLAG00005022222	ppp1r12a (ENSDLAG00005028115)	PAWR (ENSDLAG00005022241) #37	ENSDLAG00005022245 #36	ENSDLAG00005022253 #35	ENSDLAG00005022300 #34	ENSDLAG00005022430 #33	ENSDLAG00005022452 #32	ENSDLAG00005022457 #15	ENSDLAG00005022472 #16	ENSDLAG00005022693 #17	ENSDLAG00005027036 #19	ENSDLAG00005022698 #20	pah (ENSDLAG00005022732) #21	th2 (ENSDLAG00005023520) #22	NUP37 (ENSDLAG00005023603) #23	parpbp (ENSDLAG00005023617) #24	pmch (ENSDLAG00005023620) #25	igf1 (ENSDLAG00005023625) #26	ENSDLAG00005026892	ENSDLAG00005027813	ENSDLAG00005023668 #29	ENSDLAG00005023868 #30	ENSDLAG00005023981 #31	ENSDLAG00005028222	ENSDLAG00005024007	ENSDLAG00005024264	ENSDLAG00005024687	TMCC3 (ENSDLAG00005034671)	ndufa12 (ENSDLAG00005024691) #7
Large yellow croaker	MODERN SPECIES	491	ndufa12 (ENSLCRG00005014995) #7	fgd6 (ENSLCRG00005015006) #8	vezt (ENSLCRG00005015125) #9	metap2b (ENSLCRG00005015126) #10	usp44 (ENSLCRG00005015128) #11	ntn4 (ENSLCRG00005015129) #12	snrpf (ENSLCRG00005015130) #13	amdhd1 (ENSLCRG00005015131) #14	tspan9b (ENSLCRG00005015133) #15	elapor2b (ENSLCRG00005015142) #16	klhl42 (ENSLCRG00005015458) #17	itfg2 (ENSLCRG00005015463) #19	nrip2 (ENSLCRG00005015516) #18	ascl1a (ENSLCRG00005015517) #20	pah (ENSLCRG00005015533) #21	th2 (ENSLCRG00005017198) #22	nup37 (ENSLCRG00005017388) #23	parpbp (ENSLCRG00005017399) #24	ENSLCRG00005017401	igf1 (ENSLCRG00005017409) #26	ENSLCRG00005017539	btbd11a (ENSLCRG00005017547) #29	cry1a (ENSLCRG00005017690) #30	MTERF2 (ENSLCRG00005017798) #31	tnnt2c (ENSLCRG00005017799) #32	syt10 (ENSLCRG00005017801) #33	ENSLCRG00005017806 #34	cyb5r3 (ENSLCRG00005017871) #35	syt1a (ENSLCRG00005018056) #36	ENSLCRG00005018060	ENSLCRG00005018062
Gilthead seabream	MODERN SPECIES	5	usp44 (ENSSAUG00010018152) #11	ntn4 (ENSSAUG00010018150) #12	snrpf (ENSSAUG00010018146) #13	amdhd1 (ENSSAUG00010018144) #14	tspan9b (ENSSAUG00010018138) #15	ENSSAUG00010018130	ENSSAUG00010018119	ENSSAUG00010018116	elapor2b (ENSSAUG00010017867) #16	klhl42 (ENSSAUG00010017856) #17	nrip2 (ENSSAUG00010017853) #18	itfg2 (ENSSAUG00010017851) #19	ascl1a (ENSSAUG00010017842) #20	ascl1a (ENSSAUG00010017839) #20	pah (ENSSAUG00010015550) #21	th2 (ENSSAUG00010015244) #22	nup37 (ENSSAUG00010015237) #23	parpbp (ENSSAUG00010015235) #24	pmch (ENSSAUG00010015234) #25	igf1 (ENSSAUG00010015109) #26	ENSSAUG00010015101	btbd11a (ENSSAUG00010014766) #29	cry1a (ENSSAUG00010012268) #30	ENSSAUG00010012243 #31	tnnt2c (ENSSAUG00010012240) #32	syt10 (ENSSAUG00010012236) #33	ENSSAUG00010020501 #34	cyb5r3 (ENSSAUG00010020421) #35	syt1a (ENSSAUG00010020377) #36	pawr (ENSSAUG00010020373) #37	ppp1r12a (ENSSAUG00010020166)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Cottioidei	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Lumpfish	MODERN SPECIES	15	ndufa12 (ENSCLMG00005018894) #7	fgd6 (ENSCLMG00005018893) #8	vezt (ENSCLMG00005018882) #9	metap2b (ENSCLMG00005018879) #10	usp44 (ENSCLMG00005018877) #11	ntn4 (ENSCLMG00005018876) #12	snrpf (ENSCLMG00005018875) #13	amdhd1 (ENSCLMG00005018874) #14	tspan9b (ENSCLMG00005018873) #15	elapor2b (ENSCLMG00005018872) #16	klhl42 (ENSCLMG00005018871) #17	nrip2 (ENSCLMG00005018870) #18	itfg2 (ENSCLMG00005018867) #19	ascl1a (ENSCLMG00005018865) #20	pah (ENSCLMG00005018810) #21	th2 (ENSCLMG00005018807) #22	nup37 (ENSCLMG00005018805) #23	parpbp (ENSCLMG00005018804) #24	ENSCLMG00005018803	igf1 (ENSCLMG00005018801) #26	ENSCLMG00005018800 #28	ENSCLMG00005018799	ENSCLMG00005018798	ABTB3 (ENSCLMG00005018797) #29	cry1a (ENSCLMG00005018166) #30	ENSCLMG00005018160	apaf1 (ENSCLMG00005016672)	anks1b (ENSCLMG00005016584)	uhrf1bp1l (ENSCLMG00005016536)	ENSCLMG00005016528	ENSCLMG00005016527
Stickleback	MODERN SPECIES	3	ENSGACG00000020067	fgd6 (ENSGACG00000020065) #8	ENSGACG00000020064	vezt (ENSGACG00000020060) #9	metap2b (ENSGACG00000020059) #10	usp44 (ENSGACG00000020058) #11	ntn4 (ENSGACG00000020056) #12	snrpf (ENSGACG00000020055) #13	amdhd1 (ENSGACG00000020054) #14	tspan9b (ENSGACG00000020053) #15	elapor2b (ENSGACG00000020052) #16	klhl42 (ENSGACG00000020051) #17	nrip2 (ENSGACG00000020050) #18	itfg2 (ENSGACG00000020049) #19	ascl1a (ENSGACG00000020048) #20	th2 (ENSGACG00000020047) #22	nup37 (ENSGACG00000020046) #23	parpbp (ENSGACG00000020045) #24	ENSGACG00000020044	igf1 (ENSGACG00000020042) #26	ENSGACG00000020041	btbd11a (ENSGACG00000020040) #29	cry1a (ENSGACG00000020037) #30	ENSGACG00000020036 #31	tnnt2c (ENSGACG00000020034) #32	syt10 (ENSGACG00000020031) #33	ENSGACG00000020026 #34	cyb5r3 (ENSGACG00000020019) #35	syt1a (ENSGACG00000020017) #36	pawr (ENSGACG00000020015) #37	ppp1r12a (ENSGACG00000020012)
Perciformes_a	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Pike perch	MODERN SPECIES	28	ndufa12 (ENSSLUG00000007433) #7	fgd6 (ENSSLUG00000007421) #8	vezt (ENSSLUG00000007416) #9	metap2b (ENSSLUG00000007275) #10	usp44 (ENSSLUG00000007245) #11	ntn4 (ENSSLUG00000007235) #12	snrpf (ENSSLUG00000007230) #13	amdhd1 (ENSSLUG00000007223) #14	tspan9b (ENSSLUG00000007211) #15	elapor2b (ENSSLUG00000007126) #16	klhl42 (ENSSLUG00000007097) #17	nrip2 (ENSSLUG00000007092) #18	itfg2 (ENSSLUG00000007037) #19	ascl1a (ENSSLUG00000007018) #20	pah (ENSSLUG00000005452) #21	th2 (ENSSLUG00000005335) #22	nup37 (ENSSLUG00000005270) #23	parpbp (ENSSLUG00000005238) #24	pmch (ENSSLUG00000005227) #25	IGF-I (ENSSLUG00000004805) #26	ENSSLUG00000004758	btbd11a (ENSSLUG00000004616) #29	cry1a (ENSSLUG00000003675) #30	MTERF2 (ENSSLUG00000003583) #31	syt10 (ENSSLUG00000003569) #33	ENSSLUG00000003558 #33	ENSSLUG00000002793 #34	cyb5r3 (ENSSLUG00000002598) #35	syt1a (ENSSLUG00000002503) #36	pawr (ENSSLUG00000002488) #37	ppp1r12a (ENSSLUG00000002356)
Channel bull blenny	MODERN SPECIES	15	metap2b (ENSCGOG00000022870) #10	ENSCGOG00000022865	usp44 (ENSCGOG00000022864) #11	ntn4 (ENSCGOG00000022863) #12	snrpf (ENSCGOG00000022853) #13	amdhd1 (ENSCGOG00000022850) #14	snrpf (ENSCGOG00000022846) #13	amdhd1 (ENSCGOG00000022844) #14	tspan9b (ENSCGOG00000022823) #15	elapor2b (ENSCGOG00000022556) #16	klhl42 (ENSCGOG00000022519) #17	nrip2 (ENSCGOG00000022518) #18	itfg2 (ENSCGOG00000022503) #19	ascl1a (ENSCGOG00000022495) #20	pah (ENSCGOG00000021599) #21	th2 (ENSCGOG00000021420) #22	nup37 (ENSCGOG00000021365) #23	parpbp (ENSCGOG00000021360) #24	pmch (ENSCGOG00000021359) #25	igf1 (ENSCGOG00000021110) #26	ENSCGOG00000021090	btbd11a (ENSCGOG00000020950) #29	MTERF2 (ENSCGOG00000020933) #31	CD9 (ENSCGOG00000020917)	ENSCGOG00000020908	acot14 (ENSCGOG00000020865)	ENSCGOG00000020863	ssbp1 (ENSCGOG00000020859)	creb3l2 (ENSCGOG00000020856)	ENSCGOG00000018998	ENSCGOG00000018962
Ovalentaria	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Atherinomorphae	ANCESTRAL SPECIES	21	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Aplocheiloidei	ANCESTRAL SPECIES	14	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a	ENSGT00390000013067.l.l
Mangrove rivulus	MODERN SPECIES	19	vezt (ENSKMAG00000013720) #9	ENSKMAG00000013703	metap2b (ENSKMAG00000013689) #10	usp44 (ENSKMAG00000013656) #11	ntn4 (ENSKMAG00000013615) #12	snrpf (ENSKMAG00000013566) #13	amdhd1 (ENSKMAG00000013501) #14	tspan9b (ENSKMAG00000013466) #15	elapor2b (ENSKMAG00000013371) #16	ENSKMAG00000013331	klhl42 (ENSKMAG00000013321) #17	nrip2 (ENSKMAG00000013305) #18	itfg2 (ENSKMAG00000013255) #19	ascl1a (ENSKMAG00000013228) #20	pah (ENSKMAG00000013176) #21	th2 (ENSKMAG00000013134) #22	nup37 (ENSKMAG00000013089) #23	parpbp (ENSKMAG00000013026) #24	ENSKMAG00000012992	igf1 (ENSKMAG00000012960) #26	ENSKMAG00000012934	ENSKMAG00000012909	btbd11a (ENSKMAG00000012822) #29	cry1a (ENSKMAG00000012604) #30	tnnt2c (ENSKMAG00000012574) #32	syt10 (ENSKMAG00000012546) #33	ENSKMAG00000012499 #34	cyb5r3 (ENSKMAG00000012463) #35	syt1a (ENSKMAG00000012419) #36	ENSKMAG00000012380	pawr (ENSKMAG00000012360) #37
Turquoise killifish	MODERN SPECIES	1610	ENSNFUG00015023903	ENSNFUG00015023897	CD9B (ENSNFUG00015023887)	CWF19L1 (ENSNFUG00015023862)	DMTF1 (ENSNFUG00015023853)	TMEM243A (ENSNFUG00015023848)	dclre1c (ENSNFUG00015023833)	CPM (ENSNFUG00015023821)	ENSNFUG00015023818	TRHDE (ENSNFUG00015023753)	ENSNFUG00015023748	itfg2 (ENSNFUG00015023745) #19	CR847950.4 (ENSNFUG00015023740)	ASCL1A (ENSNFUG00015023739) #20	pah (ENSNFUG00015023683) #21	th2 (ENSNFUG00015022835) #22	nup37 (ENSNFUG00015022768) #23	PARPBP (ENSNFUG00015022762) #24	ENSNFUG00015022756	IGF1 (ENSNFUG00015022671) #26	ENSNFUG00015022646	btbd11a (ENSNFUG00015022372) #29	cry1a (ENSNFUG00015018834) #30	tnnt2c (ENSNFUG00015018733) #32	SYT10 (ENSNFUG00015018728) #33	ENSNFUG00015018727	ENSNFUG00015018708 #34	CYB5R3 (ENSNFUG00015018146) #35	SYT1A (ENSNFUG00015018114) #36	ENSNFUG00015018105	PAWR (ENSNFUG00015018098) #37
Cyprinodontoidei	ANCESTRAL SPECIES	20	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00840000130048.b #28	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
Poeciliinae	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35
Poecilia	ANCESTRAL SPECIES	29	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000162287.B.a.c	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35
NAME_6	ANCESTRAL SPECIES	55	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Amazon molly	MODERN SPECIES	320									elapor2b (ENSPFOG00000018104) #16	klhl42 (ENSPFOG00000018095) #17	ENSPFOG00000023570	nrip2 (ENSPFOG00000024434) #18	itfg2 (ENSPFOG00000018076) #19	ascl1a (ENSPFOG00000018073) #20	pah (ENSPFOG00000018041) #21	th2 (ENSPFOG00000018017) #22	nup37 (ENSPFOG00000017980) #23	parpbp (ENSPFOG00000017952) #24	ENSPFOG00000017948	igf1 (ENSPFOG00000017930) #26	ENSPFOG00000017913	btbd11a (ENSPFOG00000017882) #29	ENSPFOG00000017877 #31	cry1a (ENSPFOG00000017846) #30	tnnt2c (ENSPFOG00000020848) #32	syt10 (ENSPFOG00000017820) #33	ENSPFOG00000017778 #34	cyb5r3 (ENSPFOG00000017742) #35	syt1a (ENSPFOG00000017713) #36	pawr (ENSPFOG00000017689) #37	ppp1r12a (ENSPFOG00000017528)
Sailfin molly	MODERN SPECIES	1204															pah (ENSPLAG00000021918) #21	th2 (ENSPLAG00000021955) #22	nup37 (ENSPLAG00000022012) #23	parpbp (ENSPLAG00000022021) #24	ENSPLAG00000022039	igf1 (ENSPLAG00000022067) #26	ENSPLAG00000022076	ENSPLAG00000000470	btbd11a (ENSPLAG00000022149) #29
Guppy	MODERN SPECIES	454	KCNA1 (ENSPREG00000006687)	KCNA5 (ENSPREG00000006696)	ENSPREG00000006710	atp6v1f (ENSPREG00000006723)	lamtor4 (ENSPREG00000006730)	arf5 (ENSPREG00000006744)	gcc1 (ENSPREG00000006764)	dennd6b (ENSPREG00000006776)	gnsa (ENSPREG00000006816)	ENSPREG00000006838 #16	klhl42 (ENSPREG00000006874) #17	nrip2 (ENSPREG00000006888) #18	itfg2 (ENSPREG00000006906) #19	ascl1a (ENSPREG00000006969) #20	pah (ENSPREG00000006984) #21	th2 (ENSPREG00000007023) #22	nup37 (ENSPREG00000007053) #23	parpbp (ENSPREG00000007077) #24	ENSPREG00000007091	igf1 (ENSPREG00000007109) #26	ENSPREG00000007135 #28	ENSPREG00000007146	btbd11a (ENSPREG00000007168) #29	ENSPREG00000007220	slco1d1 (ENSPREG00000007258)	slco1d1 (ENSPREG00000007441)	ENSPREG00000007468	SLC2A13 (ENSPREG00000007504)	ENSPREG00000007544	ABCD2 (ENSPREG00000007569)	ENSPREG00000007642
Platyfish	MODERN SPECIES	8	fgd6 (ENSXMAG00000008908) #8	vezt (ENSXMAG00000008904) #9	metap2b (ENSXMAG00000015392) #10	usp44 (ENSXMAG00000015410) #11	ENSXMAG00000023948	ntn4 (ENSXMAG00000015415) #12	snrpf (ENSXMAG00000015448) #13	amdhd1 (ENSXMAG00000015455) #14	tspan9b (ENSXMAG00000026102) #15	elapor2b (ENSXMAG00000003572) #16	klhl42 (ENSXMAG00000003606) #17	nrip2 (ENSXMAG00000025434) #18	itfg2 (ENSXMAG00000017228) #19	ascl1a (ENSXMAG00000019614) #20	pah (ENSXMAG00000017271) #21	th2 (ENSXMAG00000017293) #22	nup37 (ENSXMAG00000017326) #23	parpbp (ENSXMAG00000017346) #24	ENSXMAG00000017362	igf1 (ENSXMAG00000028624) #26	ENSXMAG00000026515	ENSXMAG00000024762 #28	btbd11a (ENSXMAG00000025507) #29	cyb5r3 (ENSXMAG00000017411) #35	ENSXMAG00000017426 #34	syt10 (ENSXMAG00000017449) #33	ENSXMAG00000019615 #31	cry1a (ENSXMAG00000017466) #30	syt1a (ENSXMAG00000017468) #36	pawr (ENSXMAG00000026362) #37	ppp1r12a (ENSXMAG00000017534)
NAME_4	ANCESTRAL SPECIES	16	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000162287.B.a.c	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Mummichog	MODERN SPECIES	2321	fgd6 (ENSFHEG00000003155) #8	vezt (ENSFHEG00000003165) #9	metap2b (ENSFHEG00000003182) #10	usp44 (ENSFHEG00000003209) #11	ENSFHEG00000003216	ntn4 (ENSFHEG00000003235) #12	snrpf (ENSFHEG00000003240) #13	amdhd1 (ENSFHEG00000003252) #14	tspan9b (ENSFHEG00000003256) #15	elapor2b (ENSFHEG00000000095) #16	klhl42 (ENSFHEG00000003330) #17	nrip2 (ENSFHEG00000003337) #18	itfg2 (ENSFHEG00000003361) #19	ascl1a (ENSFHEG00000003373) #20	pah (ENSFHEG00000003406) #21	th2 (ENSFHEG00000003433) #22	nup37 (ENSFHEG00000003503) #23	parpbp (ENSFHEG00000003517) #24	ENSFHEG00000003530	igf1 (ENSFHEG00000003547) #26	ENSFHEG00000003558	ENSFHEG00000003583 #28	ENSFHEG00000003596	btbd11a (ENSFHEG00000003637) #29	cry1a (ENSFHEG00000003663) #30	ENSFHEG00000003669 #31	tnnt2c (ENSFHEG00000003676) #32	syt10 (ENSFHEG00000003696) #33	ENSFHEG00000003698 #33
Sheepshead minnow	MODERN SPECIES	119	ndufa12 (ENSCVAG00000015488) #7	fgd6 (ENSCVAG00000015504) #8	vezt (ENSCVAG00000015511) #9	metap2b (ENSCVAG00000015520) #10	usp44 (ENSCVAG00000015551) #11	ntn4 (ENSCVAG00000015586) #12	snrpf (ENSCVAG00000000397) #13	amdhd1 (ENSCVAG00000015623) #14	tspan9b (ENSCVAG00000015645) #15	elapor2b (ENSCVAG00000015724) #16	klhl42 (ENSCVAG00000015737) #17	nrip2 (ENSCVAG00000015746) #18	itfg2 (ENSCVAG00000015800) #19	ascl1a (ENSCVAG00000015813) #20	pah (ENSCVAG00000015847) #21	th2 (ENSCVAG00000015881) #22	nup37 (ENSCVAG00000015924) #23	parpbp (ENSCVAG00000015932) #24	ENSCVAG00000016009	igf1 (ENSCVAG00000016044) #26	ENSCVAG00000016092	ENSCVAG00000016098	btbd11a (ENSCVAG00000016113) #29	cry1a (ENSCVAG00000016128) #30	ENSCVAG00000016131 #31	syt10 (ENSCVAG00000016202) #33	ENSCVAG00000016230 #34	cyb5r3 (ENSCVAG00000016259) #35	syt1a (ENSCVAG00000016341) #36	pawr (ENSCVAG00000016350) #37	ppp1r12a (ENSCVAG00000016377)
Oryzias	ANCESTRAL SPECIES	20	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g.c #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a.d #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Oryzias_a	ANCESTRAL SPECIES	15	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000164757	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g.c #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a.d #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	53										ENSOSIG00000007254 #16	klhl42 (ENSOSIG00000007247) #17	nrip2 (ENSOSIG00000007246) #18	itfg2 (ENSOSIG00000007245) #19	ascl1a (ENSOSIG00000007243) #20	pah (ENSOSIG00000007090) #21	th2 (ENSOSIG00000006727) #22	nup37 (ENSOSIG00000006723) #23	parpbp (ENSOSIG00000006718) #24	ENSOSIG00000006717	igf1 (ENSOSIG00000006715) #26	ENSOSIG00000006713	ENSOSIG00000006712 #28	btbd11a (ENSOSIG00000006349) #29	cry1a (ENSOSIG00000004452) #30	MTERF2 (ENSOSIG00000004407) #31	tnnt2c (ENSOSIG00000004405) #32	syt10 (ENSOSIG00000004402) #33	ENSOSIG00000004396 #34	cyb5r3 (ENSOSIG00000003779) #35	syt1a (ENSOSIG00000003691) #36
Chinese medaka	MODERN SPECIES	51										ENSOSIG00000010255 #16	klhl42 (ENSOSIG00000010254) #17	nrip2 (ENSOSIG00000010252) #18	itfg2 (ENSOSIG00000010251) #19	ascl1a (ENSOSIG00000010250) #20	pah (ENSOSIG00000008674) #21	th2 (ENSOSIG00000008247) #22	nup37 (ENSOSIG00000008243) #23	parpbp (ENSOSIG00000008240) #24	ENSOSIG00000008239	ENSOSIG00000008238	ENSOSIG00000008237	igf1 (ENSOSIG00000008154) #26	btbd11a (ENSOSIG00000008093) #29	cry1a (ENSOSIG00000007925) #30	MTERF2 (ENSOSIG00000007922) #31	tnnt2c (ENSOSIG00000007920) #32	syt10 (ENSOSIG00000007919) #33	ENSOSIG00000007916	ENSOSIG00000007911	syt1a (ENSOSIG00000007909) #36	pawr (ENSOSIG00000007906) #37
Japanese Medaka HdrR	MODERN SPECIES	15	TMCC3 (ENSORLG00000016684)	ndufa12 (ENSORLG00000023845) #7	fgd6 (ENSORLG00000016673) #8	vezt (ENSORLG00000016663) #9	metap2b (ENSORLG00000016650) #10	usp44 (ENSORLG00000016627) #11	NTN4 (ENSORLG00000016622) #12	amdhd1 (ENSORLG00000016609) #14	tspan9b (ENSORLG00000016594) #15	ENSORLG00000016575 #16	klhl42 (ENSORLG00000016542) #17	nrip2 (ENSORLG00000016536) #18	itfg2 (ENSORLG00000016526) #19	ascl1a (ENSORLG00000016504) #20	pah (ENSORLG00000016500) #21	th2 (ENSORLG00000016488) #22	nup37 (ENSORLG00000016475) #23	parpbp (ENSORLG00000016457) #24	ENSORLG00000016450	igf1 (ENSORLG00000016443) #26	ENSORLG00000027418 #28	cox6b2 (ENSORLG00000016425)	btbd11a (ENSORLG00000016422) #29	ENSORLG00000016390 #31	cry1a (ENSORLG00000016410) #30	tnnt2c (ENSORLG00000016386) #32	syt10 (ENSORLG00000016381) #33	ENSORLG00000016372 #34	cyb5r3 (ENSORLG00000018656) #35	syt1a (ENSORLG00000016339) #36	pawr (ENSORLG00000026995) #37
Oryzias_b	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g.c #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a.d #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Indian medaka	MODERN SPECIES	2	ndufa12 (ENSOMEG00000023833) #7	fgd6 (ENSOMEG00000000640) #8	vezt (ENSOMEG00000002973) #9	metap2b (ENSOMEG00000002985) #10	usp44 (ENSOMEG00000002993) #11	ntn4 (ENSOMEG00000003007) #12	snrpf (ENSOMEG00000003018) #13	amdhd1 (ENSOMEG00000003082) #14	tspan9b (ENSOMEG00000003109) #15	klhl42 (ENSOMEG00000003121) #17	nrip2 (ENSOMEG00000003128) #18	elapor2b (ENSOMEG00000003209) #16	itfg2 (ENSOMEG00000003265) #19	ascl1a (ENSOMEG00000003274) #20	pah (ENSOMEG00000003302) #21	th2 (ENSOMEG00000003320) #22	nup37 (ENSOMEG00000003353) #23	parpbp (ENSOMEG00000003398) #24	ENSOMEG00000003411	igf1 (ENSOMEG00000003424) #26	ENSOMEG00000003451 #28	btbd11a (ENSOMEG00000003530) #29	cry1a (ENSOMEG00000003568) #30	ENSOMEG00000003581 #31	tnnt2c (ENSOMEG00000003593) #32	syt10 (ENSOMEG00000003610) #33	ENSOMEG00000003669 #34	cyb5r3 (ENSOMEG00000003698) #35	syt1a (ENSOMEG00000003714) #36	pawr (ENSOMEG00000003730) #37	ppp1r12a (ENSOMEG00000003801)
Javanese ricefish	MODERN SPECIES	15	TMCC3 (ENSOJAG00000023094)	ndufa12 (ENSOJAG00000023100) #7	ENSOJAG00000023148	vezt (ENSOJAG00000023164) #9	METAP2 (ENSOJAG00000023181) #10	usp44 (ENSOJAG00000023208) #11	ntn4 (ENSOJAG00000023221) #12	amdhd1 (ENSOJAG00000023244) #14	tspan9b (ENSOJAG00000023257) #15	elapor2b (ENSOJAG00000023275) #16	klhl42 (ENSOJAG00000023323) #17	nrip2 (ENSOJAG00000023325) #18	itfg2 (ENSOJAG00000023327) #19	ascl1a (ENSOJAG00000023335) #20	pah (ENSOJAG00000023397) #21	th2 (ENSOJAG00000023523) #22	nup37 (ENSOJAG00000023532) #23	parpbp (ENSOJAG00000023537) #24	ENSOJAG00000023539	igf1 (ENSOJAG00000023545) #26	ENSOJAG00000023553	btbd11a (ENSOJAG00000023574) #29	ENSOJAG00000023593	ENSOJAG00000023595	cry1a (ENSOJAG00000023629) #30	MTERF2 (ENSOJAG00000023694) #31	syt10 (ENSOJAG00000023697) #33	ENSOJAG00000023700 #34	syt1a (ENSOJAG00000023710) #36	pawr (ENSOJAG00000023718) #37	ppp1r12a (ENSOJAG00000023721)
Ovalentaria_B	ANCESTRAL SPECIES	23	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000172707.b	ENSGT00940000156419.b #29	ENSGT00940000165530.a.b	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36
Cichlidae	ANCESTRAL SPECIES	24	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000172707.b	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000172707.b	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00940000172707.b	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000156334.a.b #8	ENSGT00940000178380	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000154709.a.a #32	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT01100000264078.b	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a	ENSGT00390000013067.l.l
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT01100000264078.b	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00940000156419.b #29	ENSGT00940000155455.g #30	ENSGT00530000063817.b.b #31	ENSGT00940000158899 #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a	ENSGT00940000158804.n.a
Eastern happy	MODERN SPECIES	8	vezt (ENSACLG00000015688) #9	ENSACLG00000015738	metap2b (ENSACLG00000015833) #10	usp44 (ENSACLG00000015861) #11	ntn4 (ENSACLG00000015962) #12	snrpf (ENSACLG00000016066) #13	amdhd1 (ENSACLG00000016155) #14	tspan9b (ENSACLG00000016292) #15	elapor2b (ENSACLG00000016340) #16	klhl42 (ENSACLG00000016461) #17	nrip2 (ENSACLG00000016504) #18	itfg2 (ENSACLG00000016520) #19	ascl1a (ENSACLG00000016598) #20	ENSACLG00000016643	pah (ENSACLG00000016649) #21	th2 (ENSACLG00000016695) #22	nup37 (ENSACLG00000016738) #23	parpbp (ENSACLG00000016788) #24	pmch (ENSACLG00000016802) #25	igf1 (ENSACLG00000016815) #26	ENSACLG00000016841 #28	btbd11a (ENSACLG00000016936) #29	cry1a (ENSACLG00000017110) #30	MTERF2 (ENSACLG00000017181) #31	syt10 (ENSACLG00000017353) #33	ENSACLG00000017416 #34	cyb5r3 (ENSACLG00000017472) #35	syt1a (ENSACLG00000017513) #36	pawr (ENSACLG00000017548) #37	ppp1r12a (ENSACLG00000017614)	foxm1 (ENSACLG00000017856)
Zebra mbuna	MODERN SPECIES	1099	ENSMZEG00005000794 ##8	ENSMZEG00005000813	eri1 (ENSMZEG00005000837)	ENSMZEG00005000865	ssbp1 (ENSMZEG00005000898)	creb3l2 (ENSMZEG00005000947)	ENSMZEG00005000961	ENSMZEG00005000984	ENSMZEG00005001045	ENSMZEG00005001054	nrip2 (ENSMZEG00005001086) #18	itfg2 (ENSMZEG00005001096) #19	ascl1a (ENSMZEG00005001134) #20	ENSMZEG00005001144	pah (ENSMZEG00005001158) #21	th2 (ENSMZEG00005001193) #22	nup37 (ENSMZEG00005001223) #23	parpbp (ENSMZEG00005001242) #24	pmch (ENSMZEG00005001251) #25	igf1 (ENSMZEG00005001284) #26	ENSMZEG00005001313 #28	btbd11a (ENSMZEG00005001355) #29	cry1a (ENSMZEG00005001451) #30	MTERF2 (ENSMZEG00005001466) #31	syt10 (ENSMZEG00005001603) #33	ENSMZEG00005001628 #34	cyb5r3 (ENSMZEG00005001636) #35	syt1a (ENSMZEG00005001660) #36	pawr (ENSMZEG00005001704) #37	ppp1r12a (ENSMZEG00005001744)	foxm1 (ENSMZEG00005001943)
P. nyererei	MODERN SPECIES	487	fgd6 (ENSPNYG00000021583) #8	vezt (ENSPNYG00000021619) #9	metap2b (ENSPNYG00000021636) #10	usp44 (ENSPNYG00000021662) #11	ntn4 (ENSPNYG00000021688) #12	snrpf (ENSPNYG00000021712) #13	amdhd1 (ENSPNYG00000021749) #14	tspan9b (ENSPNYG00000021764) #15	elapor2b (ENSPNYG00000021790) #16	klhl42 (ENSPNYG00000021854) #17	nrip2 (ENSPNYG00000021862) #18	itfg2 (ENSPNYG00000021873) #19	ascl1a (ENSPNYG00000021891) #20	ENSPNYG00000021899	pah (ENSPNYG00000021907) #21	th2 (ENSPNYG00000021993) #22	nup37 (ENSPNYG00000022147) #23	parpbp (ENSPNYG00000022167) #24	ENSPNYG00000022181	igf1 (ENSPNYG00000022201) #26	ENSPNYG00000022227	btbd11a (ENSPNYG00000022244) #29	cry1a (ENSPNYG00000022329) #30	MTERF2 (ENSPNYG00000022348) #31	syt10 (ENSPNYG00000022373) #33
Burton s mouthbrooder	MODERN SPECIES	437	ENSHBUG00000000203	vezt (ENSHBUG00000008040) #9	metap2b (ENSHBUG00000008050) #10	usp44 (ENSHBUG00000008069) #11	ENSHBUG00000008093	ntn4 (ENSHBUG00000008139) #12	ENSHBUG00000008160	amdhd1 (ENSHBUG00000008199) #14	tspan9b (ENSHBUG00000008253) #15	elapor2b (ENSHBUG00000008321) #16	klhl42 (ENSHBUG00000008341) #17	nrip2 (ENSHBUG00000008345) #18	itfg2 (ENSHBUG00000008439) #19	ascl1a (ENSHBUG00000008452) #20	pah (ENSHBUG00000008494) #21	th2 (ENSHBUG00000008510) #22	nup37 (ENSHBUG00000008577) #23	parpbp (ENSHBUG00000008599) #24	ENSHBUG00000008609	igf1 (ENSHBUG00000008635) #26	ENSHBUG00000008652 #28	btbd11a (ENSHBUG00000008732) #29	cry1a (ENSHBUG00000008802) #30	MTERF2 (ENSHBUG00000008815) #31	tnnt2c (ENSHBUG00000008824) #32	syt10 (ENSHBUG00000008857) #33
Lyretail cichlid	MODERN SPECIES	291	ENSNBRG00000011853	fgd6 (ENSNBRG00000011809) #8	vezt (ENSNBRG00000011771) #9	metap2b (ENSNBRG00000011759) #10	usp44 (ENSNBRG00000011724) #11	ntn4 (ENSNBRG00000011696) #12	snrpf (ENSNBRG00000011682) #13	amdhd1 (ENSNBRG00000011657) #14	tspan9b (ENSNBRG00000011565) #15	elapor2b (ENSNBRG00000011472) #16	klhl42 (ENSNBRG00000011450) #17	nrip2 (ENSNBRG00000011429) #18	itfg2 (ENSNBRG00000011398) #19	ascl1a (ENSNBRG00000011381) #20	pah (ENSNBRG00000011340) #21	th2 (ENSNBRG00000011203) #22	nup37 (ENSNBRG00000011131) #23	parpbp (ENSNBRG00000011099) #24	ENSNBRG00000011057	igf1 (ENSNBRG00000011029) #26	ENSNBRG00000011014	ENSNBRG00000010987 #28	btbd11a (ENSNBRG00000010944) #29	ENSNBRG00000010937	MTERF2 (ENSNBRG00000010933) #31	cry1a (ENSNBRG00000010898) #30	tnnt2c (ENSNBRG00000010879) #32	syt10 (ENSNBRG00000010856) #33	ENSNBRG00000010848	ENSNBRG00000010794 #34	cyb5r3 (ENSNBRG00000010756) #35
Nile tilapia	MODERN SPECIES	8	vezt (ENSONIG00000017844) #9	metap2b (ENSONIG00000017841) #10	usp44 (ENSONIG00000017839) #11	ntn4 (ENSONIG00000017835) #12	snrpf (ENSONIG00000031061) #13	ENSONIG00000034393	amdhd1 (ENSONIG00000017833) #14	tspan9b (ENSONIG00000017829) #15	elapor2b (ENSONIG00000017824) #16	klhl42 (ENSONIG00000017822) #17	nrip2 (ENSONIG00000030365) #18	itfg2 (ENSONIG00000017820) #19	ascl1a (ENSONIG00000021219) #20	ENSONIG00000038297	pah (ENSONIG00000017811) #21	th2 (ENSONIG00000017806) #22	nup37 (ENSONIG00000041645) #23	ENSONIG00000042831	parpbp (ENSONIG00000017803) #24	ENSONIG00000029183	igf1 (ENSONIG00000017800) #26	ENSONIG00000017799	btbd11a (ENSONIG00000017796) #29	cry1a (ENSONIG00000000075) #30	MTERF2 (ENSONIG00000020695) #31	tnnt2c (ENSONIG00000020696) #32	ENSONIG00000000001 #34	syt10 (ENSONIG00000000002) #33	syt1a (ENSONIG00000000003) #36	pawr (ENSONIG00000028232) #37	ppp1r12a (ENSONIG00000000005)
Midas cichlid	MODERN SPECIES	737	ENSACIG00000012722	fgd6 (ENSACIG00000012759) #8	vezt (ENSACIG00000012829) #9	metap2b (ENSACIG00000013007) #10	usp44 (ENSACIG00000013159) #11	ntn4 (ENSACIG00000013183) #12	snrpf (ENSACIG00000013216) #13	amdhd1 (ENSACIG00000013318) #14	tspan9b (ENSACIG00000013346) #15	elapor2b (ENSACIG00000013411) #16	klhl42 (ENSACIG00000013451) #17	nrip2 (ENSACIG00000013461) #18	itfg2 (ENSACIG00000013478) #19	ascl1a (ENSACIG00000013500) #20	pah (ENSACIG00000013511) #21	th2 (ENSACIG00000013549) #22	nup37 (ENSACIG00000013665) #23	parpbp (ENSACIG00000013691) #24	ENSACIG00000013710	igf1 (ENSACIG00000013728) #26	ENSACIG00000013740	ENSACIG00000013750	btbd11a (ENSACIG00000013768) #29	cry1a (ENSACIG00000013832) #30	MTERF2 (ENSACIG00000014189) #31	tnnt2c (ENSACIG00000014196) #32	syt10 (ENSACIG00000014226) #33	ENSACIG00000014242	ENSACIG00000014253 #34	cyb5r3 (ENSACIG00000014298) #35	syt1a (ENSACIG00000014311) #36
Pomacentridae	ANCESTRAL SPECIES	59	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00530000063817.b.b #31	ENSGT00940000155455.g #30	ENSGT00940000156419.b #29	ENSGT00940000154709.a.a #32	ENSGT00940000158899.bb.b #33	ENSGT00940000158899.cb #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37
Bicolor damselfish	MODERN SPECIES	448	ndufa12 (ENSSPAG00000003085) #7	fgd6 (ENSSPAG00000003112) #8	vezt (ENSSPAG00000003139) #9	metap2b (ENSSPAG00000003159) #10	usp44 (ENSSPAG00000003185) #11	ntn4 (ENSSPAG00000003230) #12	snrpf (ENSSPAG00000003283) #13	amdhd1 (ENSSPAG00000003428) #14	tspan9b (ENSSPAG00000003452) #15	elapor2b (ENSSPAG00000003471) #16	klhl42 (ENSSPAG00000003501) #17	nrip2 (ENSSPAG00000003520) #18	itfg2 (ENSSPAG00000003528) #19	ascl1a (ENSSPAG00000003572) #20	pah (ENSSPAG00000003583) #21	th2 (ENSSPAG00000003629) #22	nup37 (ENSSPAG00000003673) #23	parpbp (ENSSPAG00000003701) #24	ENSSPAG00000003726	igf1 (ENSSPAG00000003763) #26	ENSSPAG00000003796 #28	MTERF2 (ENSSPAG00000003841) #31	cry1a (ENSSPAG00000003856) #30	ENSSPAG00000003904
Pomacentridae_A	ANCESTRAL SPECIES	58	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT00840000130048.b #28	ENSGT00530000063817.b.b #31	ENSGT00940000155455.g #30	ENSGT00940000156419.b #29	ENSGT00940000154709.a.a #32	ENSGT00940000158899.cb #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Amphiprion	ANCESTRAL SPECIES	19	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818 #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00940000168896	ENSGT00940000159081 #26	ENSGT01100000263533.b.b.a.a.a.b.a	ENSGT00530000063817.b.b #31	ENSGT00940000155455.g #30	ENSGT00940000156419.b #29	ENSGT00940000154709.a.a #32	ENSGT00940000158899.cb #33	ENSGT01050000244951.a.b.a.b.b #34	ENSGT00940000153962.b #35	ENSGT00940000155394.i.a #36	ENSGT00390000000406 #37	ENSGT00940000156120.a
Clown anemonefish	MODERN SPECIES	3008															pah (ENSAOCG00000001591) #21	th2 (ENSAOCG00000021714) #22	nup37 (ENSAOCG00000021679) #23
Orange clownfish	MODERN SPECIES	13	vezt (ENSAPEG00000022201) #9	METAP2 (ENSAPEG00000022182) #10	usp44 (ENSAPEG00000022159) #11	ENSAPEG00000022142	ntn4 (ENSAPEG00000022097) #12	snrpf (ENSAPEG00000022022) #13	amdhd1 (ENSAPEG00000021994) #14	tspan9b (ENSAPEG00000021973) #15	elapor2b (ENSAPEG00000021953) #16	klhl42 (ENSAPEG00000021941) #17	ENSAPEG00000021936	nrip2 (ENSAPEG00000021926) #18	itfg2 (ENSAPEG00000021902) #19	ascl1a (ENSAPEG00000021889) #20	pah (ENSAPEG00000021861) #21	th2 (ENSAPEG00000021831) #22	nup37 (ENSAPEG00000021794) #23	parpbp (ENSAPEG00000021705) #24	ENSAPEG00000021659	igf1 (ENSAPEG00000021610) #26	ENSAPEG00000021575	ENSAPEG00000021556 #31	cry1a (ENSAPEG00000021519) #30	btbd11a (ENSAPEG00000021482) #29	tnnt2c (ENSAPEG00000021437) #32	syt10 (ENSAPEG00000021420) #33	ENSAPEG00000021411 #34	cyb5r3 (ENSAPEG00000021367) #35	syt1a (ENSAPEG00000021322) #36	pawr (ENSAPEG00000021309) #37	ppp1r12a (ENSAPEG00000021244)
Spiny chromis	MODERN SPECIES	2043															pah (ENSAPOG00000007745) #21	th2 (ENSAPOG00000007918) #22	nup37 (ENSAPOG00000007965) #23	ENSAPOG00000007991 #24
Tiger tail seahorse	MODERN SPECIES	433	ssbp1 (ENSHCOG00000018912)	ENSHCOG00000018888	eri1 (ENSHCOG00000018865)	ENSHCOG00000018855	TMCC3 (ENSHCOG00000018827)	ntn4 (ENSHCOG00000018712) #12	ENSHCOG00000018663 #13	amdhd1 (ENSHCOG00000018637) #14	tspan9b (ENSHCOG00000018619) #15	elapor2b (ENSHCOG00000018591) #16	ENSHCOG00000018560	itfg2 (ENSHCOG00000018527) #19	ENSHCOG00000018511	ascl1a (ENSHCOG00000018503) #20	pah (ENSHCOG00000018488) #21	th2 (ENSHCOG00000018465) #22	nup37 (ENSHCOG00000018356) #23	parpbp (ENSHCOG00000018307) #24	igf1 (ENSHCOG00000018270) #26	ENSHCOG00000018199	btbd11a (ENSHCOG00000018163) #29	cry1a (ENSHCOG00000018111) #30	tnnt2c (ENSHCOG00000018063) #32	syt10 (ENSHCOG00000018057) #33	ENSHCOG00000018040 #34	ENSHCOG00000017982	TULP3 (ENSHCOG00000017974)	ENSHCOG00000017961	foxm1 (ENSHCOG00000017947)	ENSHCOG00000017941	ppfia2 (ENSHCOG00000017898)
Pinecone sodierfish	MODERN SPECIES	15	ndufa12 (ENSMMDG00005018449) #7	fgd6 (ENSMMDG00005018460) #8	vezt (ENSMMDG00005018685) #9	METAP2 (ENSMMDG00005018690) #10	usp44 (ENSMMDG00005018730) #11	ntn4 (ENSMMDG00005018731) #12	snrpf (ENSMMDG00005018733) #13	amdhd1 (ENSMMDG00005018734) #14	tspan9b (ENSMMDG00005018735) #15	elapor2b (ENSMMDG00005018739) #16	klhl42 (ENSMMDG00005018749) #17	nrip2 (ENSMMDG00005018750) #18	itfg2 (ENSMMDG00005018758) #19	ascl1a (ENSMMDG00005018763) #20	pah (ENSMMDG00005018768) #21	th2 (ENSMMDG00005018778) #22	nup37 (ENSMMDG00005018813) #23	parpbp (ENSMMDG00005018818) #24	ENSMMDG00005018820	igf1 (ENSMMDG00005018826) #26	ENSMMDG00005018912	btbd11a (ENSMMDG00005018917) #29	cry1a (ENSMMDG00005018951) #30	MTERF2 (ENSMMDG00005020073) #31	tnnt2c (ENSMMDG00005020074) #32	syt10 (ENSMMDG00005020079) #33	ENSMMDG00005020084 #33	ENSMMDG00005020134 #34	cyb5r3 (ENSMMDG00005020515) #35	syt1a (ENSMMDG00005020740) #36	pawr (ENSMMDG00005020744) #37
Cod	MODERN SPECIES	17	ENSGMOG00000016937	TBK1 (ENSGMOG00000016984)	gpr19 (ENSGMOG00000029230)	crebl2 (ENSGMOG00000017023)	dusp16 (ENSGMOG00000025213)	ENSGMOG00000006062	ENSGMOG00000006093	cradd (ENSGMOG00000010443)	socs2 (ENSGMOG00000025287)	ncaph2 (ENSGMOG00000003228)	sco2 (ENSGMOG00000003285)	ntn4 (ENSGMOG00000009327) #12	ENSGMOG00000007741 #13	amdhd1 (ENSGMOG00000007738) #14	pah (ENSGMOG00000001263) #21	th2 (ENSGMOG00000001233) #22	nup37 (ENSGMOG00000001219) #23	parpbp (ENSGMOG00000001191) #24	IGF1 (ENSGMOG00000030090) #26	ENSGMOG00000001151	btbd11a (ENSGMOG00000001108) #29	ENSGMOG00000001088 #30	tnnt2c (ENSGMOG00000001076) #32	ENSGMOG00000003257 #33	ENSGMOG00000010347 #34	ENSGMOG00000034372	ENSGMOG00000028775	ENSGMOG00000014279	ENSGMOG00000035632	ENSGMOG00000029906	ENSGMOG00000032127
Protacanthopterygii	ANCESTRAL SPECIES	23	ENSGT00390000005848 #7	ENSGT00940000156334.a.b #8	ENSGT00390000003290 #9	ENSGT00940000155016 #10	ENSGT00940000160526 #11	ENSGT00940000156615.a #12	ENSGT00940000154818.e.a #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a #15	ENSGT00940000154983.c.b #16	ENSGT00940000160124 #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611 #20	ENSGT00950000182885.B #21	ENSGT00950000182885.C.b #22	ENSGT00390000010777 #23	ENSGT00390000006088 #24	ENSGT00390000004984.b #25	ENSGT00940000159081.s.b #26	ENSGT00940000168896	ENSGT00940000159081.s.a #26	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00650000094663	ENSGT00390000002730.e.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	81		ENSGT00940000160526.i #11	ENSGT00940000156615.a.f #12	ENSGT00940000154818.e.a #13	ENSGT00390000008645 #14	ENSGT00940000158225.i.a.c.a #15	ENSGT00940000154983.c.b.`b.a #16	ENSGT00940000160124.c #17	ENSGT00940000158225.i.a.c.b #15	ENSGT00940000154983.c.b.`b.b #16	ENSGT00940000160124.d #17	ENSGT00950000182999.b.a.a #18	ENSGT00390000005378 #19	ENSGT00940000166611.d #20	ENSGT00950000182885.B.d #21	ENSGT00950000182885.C.b.e #22	ENSGT00390000010777.i #23	ENSGT00390000006088.j #24	ENSGT00940000168896	ENSGT00940000159081.s.b.b.b #26	ENSGT00940000159081.s.b.a #26	ENSGT00390000014084.e	ENSGT01030000234578.B.a.g.a.b	ENSGT00390000006747	ENSGT00950000183117.a.a.h	ENSGT00940000158254.f	ENSGT00940000155067.a.z	ENSGT00650000094663	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00940000157275.a.a	ENSGT00390000005848.gb #7	ENSGT00940000156334.a.b.c #8	ENSGT00390000003290.h.a.b #9	ENSGT00940000155016.cb #10	ENSGT00940000160526.j #11	ENSGT00940000156615.a.e #12	ENSGT00940000154818.e.a.a #13	ENSGT00390000008645.h.b #14	ENSGT00940000158225.i.a.c.a #15	ENSGT00940000154983.c.b.`b.a #16	ENSGT00940000160124.c #17	ENSGT00950000182999.b.a.a.n #18	ENSGT00940000166611.c #20	ENSGT00950000182885.B.c #21	ENSGT00950000182885.C.b.e #22	ENSGT00390000010777.i #23	ENSGT00390000006088.j #24	ENSGT00390000004984.b #25	ENSGT00940000159081.s.b.b.a #26	ENSGT00390000014084.f	ENSGT01030000234578.B.a.h	ENSGT01030000234578.B.a.g.b	ENSGT00390000006747.o	ENSGT00950000183117.a.a.g	ENSGT00940000158254.e	ENSGT00940000155067.b.a.c	ENSGT00940000155067.a.y	ENSGT00650000094663.a	ENSGT00390000002730.e.b.d	ENSGT00950000183113.b.b.c.b.l
Salmo	ANCESTRAL SPECIES	46	ENSGT00940000156334.a.b.c #8	ENSGT00390000003290.h.a.b #9	ENSGT00940000155016.cb #10	ENSGT00940000160526.j #11	ENSGT00940000156615.a.e #12	ENSGT00940000154818.e.a.a #13	ENSGT00390000008645.h.b #14	ENSGT00940000158225.i.a.d #15	ENSGT00940000158225.i.a.c.a #15	ENSGT00940000154983.c.b.`b.a #16	ENSGT00940000160124.c #17	ENSGT00950000182999.b.a.a.m #18	ENSGT00390000005378.i #19	ENSGT00940000166611.d.a #20	ENSGT00950000182885.B.c #21	ENSGT00950000182885.C.b.e #22	ENSGT00390000010777.i #23	ENSGT00390000006088.j #24	ENSGT00390000004984.b #25	ENSGT00940000159081.s.b.b.a #26	ENSGT00390000014084.f	ENSGT01030000234578.B.a.h	ENSGT01030000234578.B.a.g.b	ENSGT00390000006747.o	ENSGT00950000183117.a.a.g	ENSGT00940000158254.e	ENSGT00940000155067.b.a.c	ENSGT00940000155067.a.y	ENSGT00650000094663.a	ENSGT00390000002730.e.b.d	ENSGT00940000160161.e.a.m.b.b
Atlantic salmon	MODERN SPECIES	8	TMCC3 (ENSSSAG00000058679)	ndufa12 (ENSSSAG00000058636) #7	fgd6 (ENSSSAG00000058619) #8	vezt (ENSSSAG00000048666) #9	METAP2 (ENSSSAG00000057759) #10	USP44 (ENSSSAG00000057743) #11	ENSSSAG00000057693	ENSSSAG00000057684 #14	ENSSSAG00000057672 #15	ENSSSAG00000083161 #16	klhl42 (ENSSSAG00000085425) #17	ENSSSAG00000055824 #18	itfg2 (ENSSSAG00000055802) #19	ENSSSAG00000095127 #20	pah (ENSSSAG00000097520) #21	th2 (ENSSSAG00000052064) #22	nup37 (ENSSSAG00000051940) #23	parpbp (ENSSSAG00000051930) #24	pmch (ENSSSAG00000086642) #25	igf1 (ENSSSAG00000108388) #26	washc3 (ENSSSAG00000051495)	dram1 (ENSSSAG00000051485)	dram1 (ENSSSAG00000051450)	gnptab (ENSSSAG00000050497)	chpt1 (ENSSSAG00000105474)	mybpc1 (ENSSSAG00000047323)	spic (ENSSSAG00000082209)	ENSSSAG00000047278	VATE1 (ENSSSAG00000047230)	GALNT8 (ENSSSAG00000104480)	GALNT8 (ENSSSAG00000002843)
River trout	MODERN SPECIES	34	ndufa12 (ENSSTUG00000028522) #7	fgd6 (ENSSTUG00000028540) #8	vezt (ENSSTUG00000030021) #9	METAP2 (ENSSTUG00000030056) #10	usp44 (ENSSTUG00000030162) #11	ntn4 (ENSSTUG00000030191) #12	snrpf (ENSSTUG00000030214) #13	amdhd1 (ENSSTUG00000030241) #14	tspan9b (ENSSTUG00000030251) #15	ENSSTUG00000030347 #16	klhl42 (ENSSTUG00000033104) #17	nrip2 (ENSSTUG00000033130) #18	itfg2 (ENSSTUG00000033136) #19	ascl1a (ENSSTUG00000033213) #20	pah (ENSSTUG00000033266) #21	th2 (ENSSTUG00000035615) #22	nup37 (ENSSTUG00000035950) #23	parpbp (ENSSTUG00000036036) #24	ENSSTUG00000036045	igf1 (ENSSTUG00000036076) #26	washc3 (ENSSTUG00000036582)	dram1 (ENSSTUG00000036604)	dram1 (ENSSTUG00000036613)	gnptab (ENSSTUG00000036683)	chpt1 (ENSSTUG00000038494)	mybpc1 (ENSSTUG00000038581)	ENSSTUG00000042770	spic (ENSSTUG00000042777)	ENSSTUG00000042791	atp6v1e1b (ENSSTUG00000042807)	GALNT8 (ENSSTUG00000042923)
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000156334.a.b.c #8	ENSGT00390000003290.h.a.b #9	ENSGT00940000155016.cb #10	ENSGT00940000160526.j #11	ENSGT00940000156615.a.e #12	ENSGT00940000154818.e.a.b #13	ENSGT00940000164757.a	ENSGT00390000008645.h.b #14	ENSGT00940000158225.i.a.c.a #15	ENSGT00940000154983.c.b.`b.a #16	ENSGT00940000160124.c #17	ENSGT00950000182999.b.a.a.n #18	ENSGT00390000005378.i #19	ENSGT00940000166611.c #20	ENSGT00950000182885.B.c #21	ENSGT00950000182885.C.b.e #22	ENSGT00390000010777.i #23	ENSGT00390000006088.j #24	ENSGT00940000168896.c	ENSGT00940000159081.s.b.a.b #26	ENSGT00390000014084.f	ENSGT01030000234578.B.a.h	ENSGT01030000234578.B.a.g.b	ENSGT00390000006747.o	ENSGT00950000183117.a.a.g	ENSGT00940000158254.e	ENSGT00940000155067.b.a.d.a	ENSGT00940000155067.a.y	ENSGT00650000094663.a	ENSGT00390000002730.e.b.d	ENSGT00950000183113.b.b.c.b.l
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00390000005848.gb #7	ENSGT00940000156334.a.b.c #8	ENSGT00390000003290.h.a.b #9	ENSGT00940000155016.cb #10	ENSGT00940000160526.j #11	ENSGT00940000156615.a.e #12	ENSGT00940000154818.e.a.b #13	ENSGT00940000164757.a	ENSGT00390000008645.h.b #14	ENSGT00940000158225.i.a.c.a #15	ENSGT00940000154983.c.b.`b.a #16	ENSGT00940000160124.c #17	ENSGT00950000182999.b.a.a.n #18	ENSGT00940000166611.c #20	ENSGT00950000182885.B.c #21	ENSGT00950000182885.C.b.e #22	ENSGT00390000010777.i #23	ENSGT00390000006088.j #24	ENSGT00940000168896.c	ENSGT00940000159081.s.b.a.b #26	ENSGT00390000014084.f	ENSGT01030000234578.B.a.h	ENSGT01030000234578.B.a.g.b	ENSGT00390000006747.o	ENSGT00950000183117.a.a.g	ENSGT00940000158254.e	ENSGT00940000155067.b.a.d.a	ENSGT00940000155067.a.y	ENSGT00650000094663.a	ENSGT00390000002730.e.b.d	ENSGT00950000183113.b.b.c.b.l
Coho salmon	MODERN SPECIES	10	ENSOKIG00005044664	TMCC3 (ENSOKIG00005044677)	ndufa12 (ENSOKIG00005044702) #7	fgd6 (ENSOKIG00005044715) #8	vezt (ENSOKIG00005044744) #9	metap2b (ENSOKIG00005044856) #10	USP44 (ENSOKIG00005044906) #11	ntn4 (ENSOKIG00005044958) #12	SNRPF (ENSOKIG00005044976) #13	TSPAN9 (ENSOKIG00005044982) #15	ELAPOR2 (ENSOKIG00005045125) #16	klhl42 (ENSOKIG00005046905) #17	nrip2 (ENSOKIG00005046907) #18	ascl1a (ENSOKIG00005046911) #20	pah (ENSOKIG00005046957) #21	th2 (ENSOKIG00005047286) #22	nup37 (ENSOKIG00005047492) #23	parpbp (ENSOKIG00005047532) #24	ENSOKIG00005047543	IGF1 (ENSOKIG00005047564) #26	washc3 (ENSOKIG00005047599)	dram1 (ENSOKIG00005047623)	dram1 (ENSOKIG00005047637)	gnptab (ENSOKIG00005047672)	chpt1 (ENSOKIG00005047866)	mybpc1 (ENSOKIG00005047917)	ENSOKIG00005048072	spic (ENSOKIG00005048078)	ENSOKIG00005048080	ENSOKIG00005048086	ENSOKIG00005048100
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005010308	TMCC3 (ENSOTSG00005010306)	ndufa12 (ENSOTSG00005010305) #7	vezt (ENSOTSG00005010304) #9	metap2b (ENSOTSG00005010282) #10	usp44 (ENSOTSG00005010279) #11	ntn4 (ENSOTSG00005010278) #12	ENSOTSG00005010277	ENSOTSG00005010276 #14	tspan9b (ENSOTSG00005010275) #15	ELAPOR2 (ENSOTSG00005005653) #16	klhl42 (ENSOTSG00005005638) #17	nrip2 (ENSOTSG00005005637) #18	ascl1a (ENSOTSG00005005636) #20	pah (ENSOTSG00005005614) #21	th2 (ENSOTSG00005005358) #22	nup37 (ENSOTSG00005005034) #23	parpbp (ENSOTSG00005005028) #24	ENSOTSG00005005025	igf1 (ENSOTSG00005004895) #26	washc3 (ENSOTSG00005004891)	dram1 (ENSOTSG00005004876)	gnptab (ENSOTSG00005004308)	chpt1 (ENSOTSG00005004253)	mybpc1 (ENSOTSG00005004130)	ENSOTSG00005004126	ENSOTSG00005004125	spic (ENSOTSG00005004124)	atp6v1e1b (ENSOTSG00005004117)	ENSOTSG00005004113	ENSOTSG00005004111
Rainbow trout	MODERN SPECIES	6	fgd6 (ENSOMYG00000005679) #8	vezt (ENSOMYG00000005518) #9	METAP2 (ENSOMYG00000005237) #10	ENSOMYG00000005172	USP44 (ENSOMYG00000005148) #11	NTN4 (ENSOMYG00000005059) #12	ENSOMYG00000042368 #13	tsn9 (ENSOMYG00000042359) #15	ENSOMYG00000040026 #16	klhl42 (ENSOMYG00000039478) #17	ENSOMYG00000039459 #18	ENSOMYG00000066274	itfg2 (ENSOMYG00000039401) #19	ENSOMYG00000051961 #20	pah (ENSOMYG00000039070) #21	th2 (ENSOMYG00000038993) #22	nup37 (ENSOMYG00000038812) #23	parpbp (ENSOMYG00000038733) #24	ENSOMYG00000038696	IGF1 (ENSOMYG00000038605) #26	washc3 (ENSOMYG00000038443)	ENSOMYG00000052568	dram1 (ENSOMYG00000038520)	gnptab (ENSOMYG00000037960)	chpt1 (ENSOMYG00000037683)	mybpc1 (ENSOMYG00000037520)	ENSOMYG00000037425	spic (ENSOMYG00000037414)	atp6v1e1b (ENSOMYG00000037393)	ENSOMYG00000037379	ENSOMYG00000065117
Huchen	MODERN SPECIES	168	ndufa12 (ENSHHUG00000018016) #7	ENSHHUG00000018029 #9	ENSHHUG00000018033 #9	METAP2 (ENSHHUG00000018038) #10	usp44 (ENSHHUG00000018429) #11	ntn4 (ENSHHUG00000018470) #12	snrpf (ENSHHUG00000018483) #13	amdhd1 (ENSHHUG00000018661) #14	tspan9b (ENSHHUG00000018670) #15	ENSHHUG00000018711 #16	klhl42 (ENSHHUG00000018789) #17	itfg2 (ENSHHUG00000018797) #19	nrip2 (ENSHHUG00000018932) #18	ascl1a (ENSHHUG00000018939) #20	pah (ENSHHUG00000018953) #21	th2 (ENSHHUG00000019771) #22	nup37 (ENSHHUG00000019915) #23	parpbp (ENSHHUG00000020016) #24	pmch (ENSHHUG00000020021) #25	igf1 (ENSHHUG00000020076) #26	washc3 (ENSHHUG00000020822)	dram1 (ENSHHUG00000020829)	GNPTAB (ENSHHUG00000020855)	chpt1 (ENSHHUG00000020874)	mybpc1 (ENSHHUG00000020917)	atp6v1e1b (ENSHHUG00000022007)	spic (ENSHHUG00000022035)	ADA2 (ENSHHUG00000022050)	GALNT8 (ENSHHUG00000022068)	DYRK4 (ENSHHUG00000022276)	rad51ap1 (ENSHHUG00000022304)
Salmoninae	ANCESTRAL SPECIES	645														ENSGT00940000166611.c #20	ENSGT00950000182885.B.c #21	ENSGT00950000182885.C.b.f #22	ENSGT00390000010777.j #23	ENSGT00390000006088.i #24	ENSGT00390000004984.b #25	ENSGT00940000159081.s.b.b.a #26	ENSGT00390000014084.f	ENSGT01030000234578.B.a.g.b	ENSGT00950000183117.a.a.g	ENSGT00940000158254.e	ENSGT00940000155067.b.a	ENSGT00940000155067.a.y	ENSGT00390000002730.e.b.d
Salmoninae_a	ANCESTRAL SPECIES	75	ENSGT00390000005848.fb #7	ENSGT00940000156334.a.b.d #8	ENSGT00390000003290.h.a.a #9	ENSGT00940000155016.bb #10	ENSGT00940000160526.i #11	ENSGT00940000156615.a.f #12	ENSGT00940000154818.e.a.b #13	ENSGT00390000008645.h.a #14	ENSGT00940000158225.i.a.c.b #15	ENSGT00940000154983.c.b.`b.b #16	ENSGT00940000160124.d #17	ENSGT00950000182999.b.a.a.m #18	ENSGT00390000005378.j #19	ENSGT00940000166611.d.b #20	ENSGT00950000182885.B.d #21	ENSGT00950000182885.C.b.f #22	ENSGT00390000010777.j #23	ENSGT00390000006088.i #24	ENSGT00940000168896.d	ENSGT00940000159081.s.b.a #26	ENSGT00390000014084.e	ENSGT01030000234578.B.a.g.a.b	ENSGT00390000006747.p	ENSGT00950000183117.a.a.h	ENSGT00940000158254.f	ENSGT00940000155067.b.a.d.b	ENSGT00940000155067.a.z	ENSGT00650000094663.b	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a
Salmo	ANCESTRAL SPECIES	25	ENSGT00390000005848.fb #7	ENSGT00940000156334.a.b.d #8	ENSGT00390000003290.h.b #9	ENSGT00940000155016.bb #10	ENSGT00940000160526.i #11	ENSGT00940000156615.a.f #12	ENSGT00940000154818.e.a.b #13	ENSGT00390000008645.h.a #14	ENSGT00940000158225.i.a.c.b #15	ENSGT00940000154983.c.b.`b.b #16	ENSGT00940000160124.d #17	ENSGT00950000182999.b.a.a.n #18	ENSGT00390000005378.j #19	ENSGT00940000166611.d.b #20	ENSGT00950000182885.B.d #21	ENSGT00950000182885.C.b.f #22	ENSGT00390000010777.j #23	ENSGT00390000006088.i #24	ENSGT00940000168896.d	ENSGT00940000159081.s.b.b.b #26	ENSGT00390000014084.e	ENSGT01030000234578.B.a.g.a.b	ENSGT00390000006747.p	ENSGT00950000183117.a.a.h	ENSGT00940000158254.f	ENSGT00940000155067.b.a.d.b	ENSGT00940000155067.a.z	ENSGT00650000094663.b	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a.d
River trout	MODERN SPECIES	38	ndufa12 (ENSSTUG00000027092) #7	fgd6 (ENSSTUG00000027008) #8	vezt (ENSSTUG00000026912) #9	metap2b (ENSSTUG00000026865) #10	usp44 (ENSSTUG00000026836) #11	ntn4 (ENSSTUG00000026832) #12	snrpf (ENSSTUG00000026820) #13	amdhd1 (ENSSTUG00000026807) #14	tspan9b (ENSSTUG00000026783) #15	ELAPOR2 (ENSSTUG00000023331) #16	klhl42 (ENSSTUG00000023234) #17	ENSSTUG00000023224	nrip2 (ENSSTUG00000023213) #18	itfg2 (ENSSTUG00000023113) #19	ascl1a (ENSSTUG00000023105) #20	th2 (ENSSTUG00000021251) #22	nup37 (ENSSTUG00000020911) #23	parpbp (ENSSTUG00000020858) #24	ENSSTUG00000020854	igf1 (ENSSTUG00000020604) #26	washc3 (ENSSTUG00000020568)	dram1 (ENSSTUG00000020559)	gnptab (ENSSTUG00000019408)	chpt1 (ENSSTUG00000019195)	mybpc1 (ENSSTUG00000018454)	ENSSTUG00000018414	spic (ENSSTUG00000018410)	ENSSTUG00000018398	atp6v1e1b (ENSSTUG00000018380)	ADA2 (ENSSTUG00000018295)	GALNT8 (ENSSTUG00000018260)
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000048798	TMCC3 (ENSSSAG00000106228)	nduac (ENSSSAG00000048771) #7	fgd6 (ENSSSAG00000048712) #8	vezt (ENSSSAG00000058593) #9	METAP2 (ENSSSAG00000048649) #10	USP44 (ENSSSAG00000048637) #11	SNRPF (ENSSSAG00000105295) #13	ENSSSAG00000048610 #14	ENSSSAG00000107602 #15	ENSSSAG00000111243 #16	ENSSSAG00000096376 #17	ENSSSAG00000046203 #18	ENSSSAG00000119071 #20	pah (ENSSSAG00000045956) #21	th2 (ENSSSAG00000045042) #22	nup37 (ENSSSAG00000044831) #23	parpbp (ENSSSAG00000044750) #24	ENSSSAG00000107811	ENSSSAG00000081749	ENSSSAG00000120885	IGF1 (ENSSSAG00000044375) #26	washc3 (ENSSSAG00000044345)	dram1 (ENSSSAG00000044327)	gnptab (ENSSSAG00000043341)	chpt1 (ENSSSAG00000089632)	mybpc1 (ENSSSAG00000003533)	ENSSSAG00000002961	spic (ENSSSAG00000002954)	ENSSSAG00000002945	atp6v1e1b (ENSSSAG00000116109)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00390000005848.fb #7	ENSGT00940000156334.a.b.d #8	ENSGT00390000003290.h.a.a #9	ENSGT00940000155016.bb #10	ENSGT00940000160526.i #11	ENSGT00940000156615.a.f #12	ENSGT00940000154818.e.a.a #13	ENSGT00390000008645.h.a #14	ENSGT00940000158225.i.a.c.b #15	ENSGT00940000154983.c.b.`b.b #16	ENSGT00940000160124.d #17	ENSGT00950000182999.b.a.a.m #18	ENSGT00390000005378.j #19	ENSGT00940000166611.d.b #20	ENSGT00950000182885.B.d.b #21	ENSGT00950000182885.C.b.f #22	ENSGT00390000010777.j #23	ENSGT00390000006088.i #24	ENSGT00940000168896.d	ENSGT00940000159081.s.b.a.a #26	ENSGT00390000014084.e	ENSGT01030000234578.B.a.g.a.b	ENSGT00390000006747.p	ENSGT00950000183117.a.a.h	ENSGT00940000158254.f	ENSGT00940000155067.b.a.d.b	ENSGT00940000155067.a.z	ENSGT00650000094663.b	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	64	ENSGT00390000005848.fb #7	ENSGT00940000156334.a.b.d #8	ENSGT00390000003290.h.a.a #9	ENSGT00940000155016.bb #10	ENSGT00940000160526.i #11	ENSGT00940000156615.a.f #12	ENSGT00940000164757.b	ENSGT00390000008645.h.a #14	ENSGT00940000158225.i.a.c.b #15	ENSGT00940000154983.c.b.`b.b #16	ENSGT00940000160124.d #17	ENSGT00950000182999.b.a.a.m #18	ENSGT00390000005378.j #19	ENSGT00940000166611.d.b #20	ENSGT00950000182885.B.d.b #21	ENSGT00950000182885.C.b.f #22	ENSGT00390000010777.j #23	ENSGT00390000006088.i #24	ENSGT00940000168896.d	ENSGT00940000159081.s.b.a.a #26	ENSGT00390000014084.e	ENSGT01030000234578.B.a.g.a.b	ENSGT00390000006747.p	ENSGT00950000183117.a.a.h	ENSGT00940000158254.f	ENSGT00940000155067.b.a.d.b	ENSGT00940000155067.a.z	ENSGT00650000094663.b	ENSGT00390000002730.e.b.c	ENSGT00950000183113.b.b.c.b.k	ENSGT00940000160161.e.a.m.a.a
Coho salmon	MODERN SPECIES	29	ndufa12 (ENSOKIG00005021416) #7	fgd6 (ENSOKIG00005021469) #8	vezt (ENSOKIG00005022027) #9	METAP2 (ENSOKIG00005022135) #10	usp44 (ENSOKIG00005022428) #11	NTN4 (ENSOKIG00005022451) #12	ENSOKIG00005022464	amdhd1 (ENSOKIG00005022484) #14	tspan9b (ENSOKIG00005022504) #15	ELAPOR2 (ENSOKIG00005022714) #16	klhl42 (ENSOKIG00005023710) #17	ENSOKIG00005023729 #18	itfg2 (ENSOKIG00005023741) #19	ENSOKIG00005023760 #20	pah (ENSOKIG00005023911) #21	th2 (ENSOKIG00005025899) #22	nup37 (ENSOKIG00005026624) #23	parpbp (ENSOKIG00005026715) #24	ENSOKIG00005026748	igf1 (ENSOKIG00005026794) #26	washc3 (ENSOKIG00005027115)	dram1 (ENSOKIG00005027146)	gnptab (ENSOKIG00005027296)	chpt1 (ENSOKIG00005029016)	mybpc1 (ENSOKIG00005029297)	ENSOKIG00005030650	spic (ENSOKIG00005030681)	ENSOKIG00005030692	atp6v1e1b (ENSOKIG00005030717)	ADA2 (ENSOKIG00005030751)	GALNT8 (ENSOKIG00005030969)
Chinook salmon	MODERN SPECIES	6	syt1a (ENSOTSG00005002082) #36	ndufa12 (ENSOTSG00005002087) #7	vezt (ENSOTSG00005002095) #9	METAP2 (ENSOTSG00005002179) #10	usp44 (ENSOTSG00005002893) #11	ntn4 (ENSOTSG00005002894) #12	ENSOTSG00005002904	amdhd1 (ENSOTSG00005002912) #14	tspan9b (ENSOTSG00005002932) #15	ELAPOR2 (ENSOTSG00005002955) #16	klhl42 (ENSOTSG00005003230) #17	nrip2 (ENSOTSG00005003233) #18	itfg2 (ENSOTSG00005003235) #19	ascl1a (ENSOTSG00005003242) #20	pah (ENSOTSG00005003250) #21	th2 (ENSOTSG00005003334) #22	nup37 (ENSOTSG00005005743) #23	ENSOTSG00005005772	igf1 (ENSOTSG00005005780) #26	washc3 (ENSOTSG00005006733)	dram1 (ENSOTSG00005006735)	gnptab (ENSOTSG00005006744)	ENSOTSG00005007558	chpt1 (ENSOTSG00005007562)	mybpc1 (ENSOTSG00005007586)	ENSOTSG00005007587	spic (ENSOTSG00005007588)	ENSOTSG00005007590	atp6v1e1b (ENSOTSG00005007592)	ADA2 (ENSOTSG00005007597)	GALNT8 (ENSOTSG00005007620)
Rainbow trout	MODERN SPECIES	13	USP44 (ENSOMYG00000016335) #11	ENSOMYG00000066266	ENSOMYG00000051830	ENSOMYG00000061312	ntn4 (ENSOMYG00000016346) #12	ruxf (ENSOMYG00000016386) #13	amdhd1 (ENSOMYG00000016400) #14	ENSOMYG00000068698	ENSOMYG00000016413 #15	ENSOMYG00000016472 #16	klhl42 (ENSOMYG00000017202) #17	ENSOMYG00000017211 #18	itfg2 (ENSOMYG00000017221) #19	ENSOMYG00000017228 #20	pah (ENSOMYG00000017392) #21	th2 (ENSOMYG00000022464) #22	nup37 (ENSOMYG00000023359) #23	ENSOMYG00000023418	igf1 (ENSOMYG00000023593) #26	ENSOMYG00000023901	dram1 (ENSOMYG00000023912)	gnptab (ENSOMYG00000024139)	chpt1 (ENSOMYG00000024956)	mybpc1 (ENSOMYG00000025349)	spic (ENSOMYG00000026260)	ENSOMYG00000026269	atp6v1e1b (ENSOMYG00000026302)	ENSOMYG00000026324	GALNT8 (ENSOMYG00000026382)	GALNT8 (ENSOMYG00000026443)	DYRK4 (ENSOMYG00000005829)
Huchen	MODERN SPECIES	4923															pah (ENSHHUG00000039234) #21	th2 (ENSHHUG00000039203) #22	nup37 (ENSHHUG00000039186) #23	parpbp (ENSHHUG00000039174) #24	ENSHHUG00000039154
Northern pike	MODERN SPECIES	22	fgd6 (ENSELUG00000003018) #8	vezt (ENSELUG00000000094) #9	metap2b (ENSELUG00000003080) #10	usp44 (ENSELUG00000003098) #11	ntn4 (ENSELUG00000003115) #12	ENSELUG00000026262	snrpf (ENSELUG00000003121) #13	amdhd1 (ENSELUG00000001354) #14	tspan9b (ENSELUG00000003152) #15	elapor2b (ENSELUG00000003204) #16	klhl42 (ENSELUG00000003220) #17	nrip2 (ENSELUG00000003231) #18	itfg2 (ENSELUG00000003251) #19	ascl1a (ENSELUG00000003258) #20	pah (ENSELUG00000003301) #21	th2 (ENSELUG00000003327) #22	nup37 (ENSELUG00000003359) #23	parpbp (ENSELUG00000003382) #24	ENSELUG00000003396	igf1 (ENSELUG00000003410) #26	washc3 (ENSELUG00000001180)	dram1 (ENSELUG00000003450)	gnptab (ENSELUG00000003506)	chpt1 (ENSELUG00000003556)	mybpc1 (ENSELUG00000003611)	ENSELUG00000003623	spic (ENSELUG00000003655)	atp6v1e1b (ENSELUG00000003707)	ADA2 (ENSELUG00000001244)	GALNT8 (ENSELUG00000003855)	DYRK4 (ENSELUG00000003899)