Chordata	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Euteleostomi	ANCESTRAL SPECIES	1393																ENSGT00940000154700 #22	ENSGT00940000165851
Sarcopterygii	ANCESTRAL SPECIES	1186																ENSGT00940000154700 #22	ENSGT00940000165851
Tetrapoda	ANCESTRAL SPECIES	103	ENSGT00390000018612.a.a	ENSGT00950000182841.b.b.a	ENSGT00950000182841.a	ENSGT01030000235305	ENSGT00940000155391.b	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00990000203615.a.a.a.a	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00390000014700.b.a.b	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000160261	ENSGT00940000161770	ENSGT00940000164677	ENSGT00940000153561.b.a.b	ENSGT00950000183186.A
Amniota	ANCESTRAL SPECIES	52	ENSGT00940000164717	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT01050000244900.a.b	ENSGT00730000111459	ENSGT00940000158693.C	ENSGT00940000155391.b	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00390000009228.a	ENSGT00390000004452	ENSGT00940000160261	ENSGT00940000161770	ENSGT00940000164677	ENSGT00940000153561.b.a.b	ENSGT00950000183186.A	ENSGT00390000004520	ENSGT00940000162319	ENSGT00940000160092.C
Mammalia	ANCESTRAL SPECIES	86							ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000175482	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00390000011694	ENSGT00940000161433	ENSGT00940000161465	ENSGT00560000077365
Theria	ANCESTRAL SPECIES	37	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799 #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000160506	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648
Eutheria	ANCESTRAL SPECIES	21	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Suina	ANCESTRAL SPECIES	2	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Pig	MODERN SPECIES	14	SLC17A7 (ENSSSCG00000003170) #7	PIH1D1 (ENSSSCG00000003169) #8	ALDH16A1 (ENSSSCG00000003168) #9	FLT3LG (ENSSSCG00000034448) #10	ENSSSCG00000052671 #11	RPS11 (ENSSSCG00000003165) #12	FCGRT (ENSSSCG00000003187) #13	RCN3 (ENSSSCG00000024823) #14	NOSIP (ENSSSCG00000029154) #15	PRRG2 (ENSSSCG00000003161) #16	ENSSSCG00000032668 #17	RRAS (ENSSSCG00000003183) #18	SCAF1 (ENSSSCG00000038807) #19	IRF3 (ENSSSCG00000003178) #20	ENSSSCG00000003177 #21	PRMT1 (ENSSSCG00000003189) #22	CPT1C (ENSSSCG00000024872) #23	TSKS (ENSSSCG00000003191) #24	AP2A1 (ENSSSCG00000003199) #25	FUZ (ENSSSCG00000003198) #26	MED25 (ENSSSCG00000003197) #27	PTOV1 (ENSSSCG00000003196) #28	PNKP (ENSSSCG00000003195) #29	AKT1S1 (ENSSSCG00000003194) #30	TBC1D17 (ENSSSCG00000003193) #31	IL4I1 (ENSSSCG00000003192) #32	NUP62 (ENSSSCG00000040333) #33	ATF5 (ENSSSCG00000003201) #34	VRK3 (ENSSSCG00000003204) #35	ZNF473 (ENSSSCG00000037710) #36	IZUMO2 (ENSSSCG00000003207) #37
Chacoan peccary	MODERN SPECIES	799	SLC17A7 (ENSCWAG00000005787) #7	PIH1D1 (ENSCWAG00000005886) #8	ALDH16A1 (ENSCWAG00000005930) #9	FLT3LG (ENSCWAG00000006205) #10	ENSCWAG00000006241 #11	RPS11 (ENSCWAG00000006295) #12	FCGRT (ENSCWAG00000006333) #13	RCN3 (ENSCWAG00000006394) #14	NOSIP (ENSCWAG00000006413) #15	PRRG2 (ENSCWAG00000006438) #16	PRR12 (ENSCWAG00000006486) #17	RRAS (ENSCWAG00000006558) #18	SCAF1 (ENSCWAG00000006581) #19	IRF3 (ENSCWAG00000006610) #20	BCL2L12 (ENSCWAG00000006662)	PRMT1 (ENSCWAG00000006728) #22	ADM5 (ENSCWAG00000006802)	CPT1C (ENSCWAG00000006842) #23	TSKS (ENSCWAG00000007022) #24	AP2A1 (ENSCWAG00000007063) #25	FUZ (ENSCWAG00000007131) #26	MED25 (ENSCWAG00000007240) #27	PTOV1 (ENSCWAG00000007356) #28
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Camelidae	ANCESTRAL SPECIES	40	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439.d #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Arabian camel	MODERN SPECIES	35	SLC17A7 (ENSCDRG00005006915) #7	PIH1D1 (ENSCDRG00005006995) #8	ALDH16A1 (ENSCDRG00005007092) #9	FLT3LG (ENSCDRG00005007423) #10	ENSCDRG00005007454 #11	RPS11 (ENSCDRG00005007529) #12	FCGRT (ENSCDRG00005007612) #13	RCN3 (ENSCDRG00005007659) #14	NOSIP (ENSCDRG00005007735) #15	PRRG2 (ENSCDRG00005007833) #16	ENSCDRG00005007865 #17	RRAS (ENSCDRG00005007942) #18	ENSCDRG00005008031 #19	IRF3 (ENSCDRG00005008089) #20	BCL2L12 (ENSCDRG00005008265)	PRMT1 (ENSCDRG00005008397) #22	ENSCDRG00005008537	CPT1C (ENSCDRG00005008587) #23	TSKS (ENSCDRG00005008834) #24	AP2A1 (ENSCDRG00005008977) #25	FUZ (ENSCDRG00005009177) #26	MED25 (ENSCDRG00005009307) #27	PTOV1 (ENSCDRG00005009693) #28	PNKP (ENSCDRG00005009984) #29	AKT1S1 (ENSCDRG00005010128) #30	TBC1D17 (ENSCDRG00005010291) #31	IL4I1 (ENSCDRG00005010762) #32	NUP62 (ENSCDRG00005010815) #33	ENSCDRG00005010927	VRK3 (ENSCDRG00005011211) #35	ZNF473 (ENSCDRG00005011477) #36
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00940000153096.b.c.b.a.b.a	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00940000153096.b.c.b.a.b.a	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Narwhal	MODERN SPECIES	296	SLC17A7 (ENSMMNG00015003297) #7	PIH1D1 (ENSMMNG00015003335) #8	ALDH16A1 (ENSMMNG00015003418) #9	ENSMMNG00015003557 #10	ENSMMNG00015003578 #11	ENSMMNG00015003626 #12	FCGRT (ENSMMNG00015003661) #13	RCN3 (ENSMMNG00015003695) #14	NOSIP (ENSMMNG00015003722) #15	PRRG2 (ENSMMNG00015003734) #16	PRR12 (ENSMMNG00015003767) #17	RRAS (ENSMMNG00015003824) #18	SCAF1 (ENSMMNG00015003847) #19	IRF3 (ENSMMNG00015003876) #20	BCL2L12 (ENSMMNG00015005053)	PRMT1 (ENSMMNG00015005090) #22	ENSMMNG00015005132	CPT1C (ENSMMNG00015005146) #23	ENSMMNG00015005171	TSKS (ENSMMNG00015005180) #24	AP2A1 (ENSMMNG00015005214) #25	FUZ (ENSMMNG00015005271) #26	MED25 (ENSMMNG00015005365) #27	PNKP (ENSMMNG00015005451) #29	AKT1S1 (ENSMMNG00015005500) #30	TBC1D17 (ENSMMNG00015005552) #31	IL4I1 (ENSMMNG00015005634) #32	NUP62 (ENSMMNG00015005672) #33	ATF5 (ENSMMNG00015005682) #34	ENSMMNG00015005704	VRK3 (ENSMMNG00015005758) #35
Beluga whale	MODERN SPECIES	14	PIH1D1 (ENSDLEG00000005667) #8	ALDH16A1 (ENSDLEG00000005644) #9	FLT3LG (ENSDLEG00000005583) #10	RPL13A (ENSDLEG00000005530) #11	RPS11 (ENSDLEG00000005522) #12	FCGRT (ENSDLEG00000005485) #13	RCN3 (ENSDLEG00000005474) #14	ENSDLEG00000005466 #15	PRRG2 (ENSDLEG00000005453) #16	PRR12 (ENSDLEG00000005433) #17	RRAS (ENSDLEG00000005402) #18	SCAF1 (ENSDLEG00000005393) #19	IRF3 (ENSDLEG00000005363) #20	BCL2L12 (ENSDLEG00000005332)	ENSDLEG00000005326	PRMT1 (ENSDLEG00000005316) #22	ADM5 (ENSDLEG00000005309)	CPT1C (ENSDLEG00000004382) #23	ENSDLEG00000004185	ENSDLEG00000004141 #24	ENSDLEG00000004131 ##25	ENSDLEG00000004126	ENSDLEG00000004071 #24	AP2A1 (ENSDLEG00000003833) #25	FUZ (ENSDLEG00000003745) #26	MED25 (ENSDLEG00000003671) #27	PTOV1 (ENSDLEG00000003560) #28	PNKP (ENSDLEG00000003526) #29	AKT1S1 (ENSDLEG00000003508) #30	TBC1D17 (ENSDLEG00000003382) #31	IL4I1 (ENSDLEG00000003333) #32
Dolphin	MODERN SPECIES	3246	SLC17A7 (ENSTTRG00000005430) #7	PIH1D1 (ENSTTRG00000005448) #8	ALDH16A1 (ENSTTRG00000005455) #9	FLT3LG (ENSTTRG00000005474) #10	ENSTTRG00000005485 #11	RPS11 (ENSTTRG00000005495) #12	FCGRT (ENSTTRG00000005500) #13	RCN3 (ENSTTRG00000005508) #14	NOSIP (ENSTTRG00000005514) #15	PRRG2 (ENSTTRG00000005516) #16	ENSTTRG00000005519 #17	RRAS (ENSTTRG00000005524) #18	SCAF1 (ENSTTRG00000005527) #19	IRF3 (ENSTTRG00000005531) #20	BCL2L12 (ENSTTRG00000005533)	PRMT1 (ENSTTRG00000005537) #22	CPT1C (ENSTTRG00000005539) #23	TSKS (ENSTTRG00000005542) #24	AP2A1 (ENSTTRG00000005545) #25	FUZ (ENSTTRG00000005547) #26
Sperm whale	MODERN SPECIES	8	CCER2 (ENSPCTG00005009554)	NFKBIB (ENSPCTG00005009602)	SIRT2 (ENSPCTG00005009688)	RINL (ENSPCTG00005009967)	HNRNPL (ENSPCTG00005010149)	ECH1 (ENSPCTG00005010195)	LGALS4 (ENSPCTG00005010249)	LGALS7B (ENSPCTG00005010368)	ENSPCTG00005010400	PRR12 (ENSPCTG00005010439) #17	RRAS (ENSPCTG00005010605) #18	ENSPCTG00005010658 #19	ENSPCTG00005010678 #19	IRF3 (ENSPCTG00005010716) #20	BCL2L12 (ENSPCTG00005010802)	PRMT1 (ENSPCTG00005010926) #22	ADM5 (ENSPCTG00005011058)	CPT1C (ENSPCTG00005011091) #23	TSKS (ENSPCTG00005011160) #24	ENSPCTG00005011263 #25	ENSPCTG00005011339	PPFIA3 (ENSPCTG00005011438)	LIN7B (ENSPCTG00005012071)	SNRNP70 (ENSPCTG00005009001)	KCNA7 (ENSPCTG00005009040)	KCNA7 (ENSPCTG00005009073)	ENSPCTG00005009089	RUVBL2 (ENSPCTG00005009123)	GYS1 (ENSPCTG00005009316)	BAX (ENSPCTG00005009439)	ENSPCTG00005009590
Blue whale	MODERN SPECIES	10	GFY (ENSBMSG00010014599)	SLC17A7 (ENSBMSG00010014462) #7	PIH1D1 (ENSBMSG00010014378) #8	ALDH16A1 (ENSBMSG00010014229) #9	FLT3LG (ENSBMSG00010014045) #10	ENSBMSG00010021476 #11	RPS11 (ENSBMSG00010021462) #12	FCGRT (ENSBMSG00010021425) #13	RCN3 (ENSBMSG00010021418) #14	NOSIP (ENSBMSG00010021409) #15	PRRG2 (ENSBMSG00010021396) #16	PRR12 (ENSBMSG00010021379) #17	RRAS (ENSBMSG00010021366) #18	SCAF1 (ENSBMSG00010021355) #19	IRF3 (ENSBMSG00010021347) #20	PRMT1 (ENSBMSG00010021258) #22	ENSBMSG00010021213	CPT1C (ENSBMSG00010021196) #23	TSKS (ENSBMSG00010021176) #24	AP2A1 (ENSBMSG00010021155) #25	FUZ (ENSBMSG00010021113) #26	MED25 (ENSBMSG00010021075) #27	PTOV1 (ENSBMSG00010021043) #28	PNKP (ENSBMSG00010021012) #29	AKT1S1 (ENSBMSG00010020985) #30	TBC1D17 (ENSBMSG00010020938) #31	IL4I1 (ENSBMSG00010020882) #32	NUP62 (ENSBMSG00010020840) #33	ATF5 (ENSBMSG00010020834) #34	VRK3 (ENSBMSG00010020803) #35	ZNF473 (ENSBMSG00010020773) #36
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	353	ENSMMSG00000009400	ENSMMSG00000009441	SP140 (ENSMMSG00000009514)	ENSMMSG00000009672	ENSMMSG00000009643	CAB39 (ENSMMSG00000009724)	ITM2C (ENSMMSG00000009765)	GPR55 (ENSMMSG00000009994)	ENSMMSG00000010028	C2orf72 (ENSMMSG00000010077)	ENSMMSG00000010102	PSMD1 (ENSMMSG00000010125)	HTR2B (ENSMMSG00000010245)	ARMC9 (ENSMMSG00000010272)	B3GNT7 (ENSMMSG00000010494)	ENSMMSG00000010521 #22	ENSMMSG00000010637	NMUR1 (ENSMMSG00000010684)	ENSMMSG00000010724	PDE6D (ENSMMSG00000010813)	COPS7B (ENSMMSG00000010858)	ENSMMSG00000010908	NPPC (ENSMMSG00000010923)	DIS3L2 (ENSMMSG00000010947)	ENSMMSG00000011007	ENSMMSG00000011032	ENSMMSG00000011054	ENSMMSG00000011102	ENSMMSG00000011117	ENSMMSG00000011160	ENSMMSG00000011207
Siberian musk deer	MODERN SPECIES	124	PIH1D1 (ENSMMSG00000003162) #8	ALDH16A1 (ENSMMSG00000003049) #9	ENSMMSG00000002991 #10	ENSMMSG00000002918 #11	ENSMMSG00000002892 #12	ENSMMSG00000002876 #18	FCGRT (ENSMMSG00000002863) #13	RCN3 (ENSMMSG00000002846) #14	NOSIP (ENSMMSG00000002827) #15	PRRG2 (ENSMMSG00000002800) #16	PRR12 (ENSMMSG00000002678) #17	RRAS (ENSMMSG00000002634) #18	SCAF1 (ENSMMSG00000002608) #19	IRF3 (ENSMMSG00000002560) #20	BCL2L12 (ENSMMSG00000002524)	ENSMMSG00000002440 #22	ENSMMSG00000002408	CPT1C (ENSMMSG00000002363) #23	TSKS (ENSMMSG00000002323) #24	AP2A1 (ENSMMSG00000002265) #25	FUZ (ENSMMSG00000002233) #26	MED25 (ENSMMSG00000002159) #27	PTOV1 (ENSMMSG00000002088) #28	PNKP (ENSMMSG00000002008) #29	AKT1S1 (ENSMMSG00000001973) #30	TBC1D17 (ENSMMSG00000001847) #31	IL4I1 (ENSMMSG00000001798) #32	NUP62 (ENSMMSG00000001784) #33	ATF5 (ENSMMSG00000001770) #34	ENSMMSG00000001743	VRK3 (ENSMMSG00000001666) #35
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i.b #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Goat	DUPLICATION
Goat	MODERN SPECIES	9	PIH1D1 (ENSCHIG00000025674) #8	ALDH16A1 (ENSCHIG00000022106) #9	FLT3LG (ENSCHIG00000013222) #10	ENSCHIG00000021732 #11	RPS11 (ENSCHIG00000027213) #12	FCGRT (ENSCHIG00000024609) #13	RCN3 (ENSCHIG00000010966) #14	NOSIP (ENSCHIG00000024881) #15	PRRG2 (ENSCHIG00000023430) #16	ENSCHIG00000027043 #17	ENSCHIG00000012558 #17	RRAS (ENSCHIG00000025071) #18	SCAF1 (ENSCHIG00000019580) #19	IRF3 (ENSCHIG00000017942) #20	BCL2L12 (ENSCHIG00000014818)	PRMT1 (ENSCHIG00000014997) #22	ENSCHIG00000016069	CPT1C (ENSCHIG00000025275) #23	TSKS (ENSCHIG00000018371) #24	AP2A1 (ENSCHIG00000025129) #25	FUZ (ENSCHIG00000021495) #26	MED25 (ENSCHIG00000008085) #27	PTOV1 (ENSCHIG00000009929) #28	PNKP (ENSCHIG00000023637) #29	AKT1S1 (ENSCHIG00000026415) #30	TBC1D17 (ENSCHIG00000020513) #31	IL4I1 (ENSCHIG00000014204) #32	NUP62 (ENSCHIG00000012083) #33	ATF5 (ENSCHIG00000017188) #34	VRK3 (ENSCHIG00000017552) #35	ZNF473 (ENSCHIG00000009646) #36
Goat	MODERN SPECIES	11	SP110 (ENSCHIG00000013385)	ENSCHIG00000023219	ENSCHIG00000011406	ENSCHIG00000023550	ENSCHIG00000016805	CAB39 (ENSCHIG00000024432)	ITM2C (ENSCHIG00000019713)	GPR55 (ENSCHIG00000016307)	SPATA3 (ENSCHIG00000024389)	C2orf72 (ENSCHIG00000014816)	HTR2B (ENSCHIG00000026300)	ENSCHIG00000018038	PSMD1 (ENSCHIG00000017071)	ARMC9 (ENSCHIG00000013895)	B3GNT7 (ENSCHIG00000024123)	ENSCHIG00000017014 #22	ENSCHIG00000010894	NMUR1 (ENSCHIG00000022412)	PDE6D (ENSCHIG00000008236)	COPS7B (ENSCHIG00000009807)	NPPC (ENSCHIG00000021412)	ENSCHIG00000013797	DIS3L2 (ENSCHIG00000022192)	ENSCHIG00000012063	ENSCHIG00000025249	ENSCHIG00000025753	ENSCHIG00000024942	ENSCHIG00000020345	ENSCHIG00000009791	ECEL1 (ENSCHIG00000008360)	PRSS56 (ENSCHIG00000006707)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	5	SLC17A7 (ENSOARG00020022623) #7	PIH1D1 (ENSOARG00020022711) #8	ALDH16A1 (ENSOARG00020022768) #9	FLT3LG (ENSOARG00020022954) #10	ENSOARG00020022981 #11	RPS11 (ENSOARG00020009205) #12	FCGRT (ENSOARG00020009245) #13	RCN3 (ENSOARG00020009363) #14	NOSIP (ENSOARG00020009405) #15	PRRG2 (ENSOARG00020009444) #16	PRR12 (ENSOARG00020009487) #17	RRAS (ENSOARG00020009655) #18	SCAF1 (ENSOARG00020009687) #19	IRF3 (ENSOARG00020009726) #20	BCL2L12 (ENSOARG00020009833)	PRMT1 (ENSOARG00020009967) #22	ENSOARG00020010309	CPT1C (ENSOARG00020010351) #23	TSKS (ENSOARG00020010412) #24	AP2A1 (ENSOARG00020010527) #25	FUZ (ENSOARG00020010715) #26	MED25 (ENSOARG00020010912) #27	PTOV1 (ENSOARG00020011240) #28	PNKP (ENSOARG00020011554) #29	AKT1S1 (ENSOARG00020011932) #30	TBC1D17 (ENSOARG00020012020) #31	IL4I1 (ENSOARG00020012301) #32	NUP62 (ENSOARG00020012515) #33	ATF5 (ENSOARG00020012533) #34	ENSOARG00020012572	VRK3 (ENSOARG00020012729) #35
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020009265	ENSOARG00020009400	ENSOARG00020009482	ENSOARG00020009511	ENSOARG00020009545	CAB39 (ENSOARG00020009580)	ITM2C (ENSOARG00020009671)	GPR55 (ENSOARG00020010161)	SPATA3 (ENSOARG00020010184)	C2orf72 (ENSOARG00020010235)	PSMD1 (ENSOARG00020010355)	HTR2B (ENSOARG00020010696)	ENSOARG00020010779	ARMC9 (ENSOARG00020010823)	B3GNT7 (ENSOARG00020011135)	ENSOARG00020011186 #22	ENSOARG00020011332	NMUR1 (ENSOARG00020011405)	PTMA (ENSOARG00020011440)	PDE6D (ENSOARG00020011528)	COPS7B (ENSOARG00020011620)	NPPC (ENSOARG00020011896)	DIS3L2 (ENSOARG00020011931)	ENSOARG00020012043	ENSOARG00020012112	ENSOARG00020012262	ENSOARG00020012579	ENSOARG00020015111	ENSOARG00020015541	ENSOARG00020016422	ECEL1 (ENSOARG00020016557)
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
American bison	MODERN SPECIES	3201	PTH2 (ENSBBBG00000010316)	GFY (ENSBBBG00000010311)	SLC17A7 (ENSBBBG00000001775) #7	ALDH16A1 (ENSBBBG00000008431) #9	FLT3LG (ENSBBBG00000000042) #10	ENSBBBG00000000077 #11	RPS11 (ENSBBBG00000000112) #12	FCGRT (ENSBBBG00000000126) #13	RCN3 (ENSBBBG00000000135) #14	ENSBBBG00000007115 #15	PRRG2 (ENSBBBG00000001739) #16	PRR12 (ENSBBBG00000010246) #17	ENSBBBG00000001733 #19	ENSBBBG00000010184 #20	BCL2L12 (ENSBBBG00000010166)	PRMT1 (ENSBBBG00000010142) #22	ENSBBBG00000010104	CPT1C (ENSBBBG00000010097) #23	TSKS (ENSBBBG00000010082) #24	AP2A1 (ENSBBBG00000010075) #25	FUZ (ENSBBBG00000010049) #26	MED25 (ENSBBBG00000010023) #27	PTOV1 (ENSBBBG00000010000) #28	PNKP (ENSBBBG00000009989) #29	TBC1D17 (ENSBBBG00000009959) #31	IL4I1 (ENSBBBG00000009938) #32	NUP62 (ENSBBBG00000009933) #33	ATF5 (ENSBBBG00000009930) #34	ENSBBBG00000009909	VRK3 (ENSBBBG00000009862) #35	ENSBBBG00000009834 #36
Bos	ANCESTRAL SPECIES	4	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a.h.b #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Bos_b	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a.h.b #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Cow	MODERN SPECIES	9	PIH1D1 (ENSBTAG00000016526) #8	ALDH16A1 (ENSBTAG00000000330) #9	FLT3LG (ENSBTAG00000038045) #10	RPL13A (ENSBTAG00000005296) #11	RPS11 (ENSBTAG00000013924) #12	FCGRT (ENSBTAG00000013926) #13	RCN3 (ENSBTAG00000021799) #14	NOSIP (ENSBTAG00000014450) #15	PRRG2 (ENSBTAG00000030563) #16	PRR12 (ENSBTAG00000014454) #17	ENSBTAG00000049577 #17	RRAS (ENSBTAG00000020983) #18	SCAF1 (ENSBTAG00000006612) #19	IRF3 (ENSBTAG00000006633) #20	BCL2L12 (ENSBTAG00000006638)	PRMT1 (ENSBTAG00000006646) #22	ENSBTAG00000049114	CPT1C (ENSBTAG00000012205) #23	TSKS (ENSBTAG00000019179) #24	AP2A1 (ENSBTAG00000019180) #25	FUZ (ENSBTAG00000019183) #26	MED25 (ENSBTAG00000008518) #27	PTOV1 (ENSBTAG00000030578) #28	PNKP (ENSBTAG00000001834) #29	AKT1S1 (ENSBTAG00000005763) #30	TBC1D17 (ENSBTAG00000047035) #31	IL4I1 (ENSBTAG00000005766) #32	NUP62 (ENSBTAG00000050948) #33	ATF5 (ENSBTAG00000003457) #34	ENSBTAG00000016997	VRK3 (ENSBTAG00000005367) #35
Hybrid Bos Indicus	MODERN SPECIES	9	SLC17A7 (ENSBIXG00005027991) #7	PIH1D1 (ENSBIXG00005028016) #8	ALDH16A1 (ENSBIXG00005028107) #9	FLT3LG (ENSBIXG00005028193) #10	ENSBIXG00005028251 #11	RPS11 (ENSBIXG00005028282) #12	FCGRT (ENSBIXG00005004878) #13	RCN3 (ENSBIXG00005028407) #14	NOSIP (ENSBIXG00005028444) #15	PRRG2 (ENSBIXG00005028454) #16	PRR12 (ENSBIXG00005028496) #17	RRAS (ENSBIXG00005028511) #18	SCAF1 (ENSBIXG00005028526) #19	IRF3 (ENSBIXG00005006544) #20	BCL2L12 (ENSBIXG00005028650)	PRMT1 (ENSBIXG00005028768) #22	CPT1C (ENSBIXG00005028794) #23	TSKS (ENSBIXG00005005006) #24	AP2A1 (ENSBIXG00005028858) #25	FUZ (ENSBIXG00005005035) #26	MED25 (ENSBIXG00005029006) #27	PNKP (ENSBIXG00005001965) #29	AKT1S1 (ENSBIXG00005029090) #30	TBC1D17 (ENSBIXG00005005183) #31	IL4I1 (ENSBIXG00005005205) #32	NUP62 (ENSBIXG00005001804) #33	ATF5 (ENSBIXG00005001786) #34	ENSBIXG00005001776	VRK3 (ENSBIXG00005001640) #35	ENSBIXG00005001604 #36	ENSBIXG00005011925
Bos_a	ANCESTRAL SPECIES	16	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.i #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a.h.b #19	ENSGT00950000183205.b.a.b.a.a.h.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Wild yak	MODERN SPECIES	1730	SLC17A7 (ENSBMUG00000003053) #7	PIH1D1 (ENSBMUG00000003075) #8	ALDH16A1 (ENSBMUG00000003395) #9	FLT3LG (ENSBMUG00000003574) #10	ENSBMUG00000003651 #11	ENSBMUG00000003690	FCGRT (ENSBMUG00000003733) #13	RCN3 (ENSBMUG00000003756) #14	NOSIP (ENSBMUG00000003881) #15	PRRG2 (ENSBMUG00000003914) #16	PRR12 (ENSBMUG00000003983) #17	RRAS (ENSBMUG00000004017) #18	ENSBMUG00000004158 #19	IRF3 (ENSBMUG00000004245) #20	BCL2L12 (ENSBMUG00000004304)	PRMT1 (ENSBMUG00000004375) #22	ENSBMUG00000004408	CPT1C (ENSBMUG00000004440) #23	TSKS (ENSBMUG00000004483) #24	AP2A1 (ENSBMUG00000004532) #25	FUZ (ENSBMUG00000004591) #26	MED25 (ENSBMUG00000004720) #27	PTOV1 (ENSBMUG00000004841) #28	ENSBMUG00000004888 #29	ENSBMUG00000004900 #30	TBC1D17 (ENSBMUG00000005003) #31	NUP62 (ENSBMUG00000005054) #33	ATF5 (ENSBMUG00000005063) #34	ENSBMUG00000005072	VRK3 (ENSBMUG00000005187) #35	ENSBMUG00000005224 #36
Domestic yak	MODERN SPECIES	12	FLT3LG (ENSBGRG00000014021) #10	ENSBGRG00000024407 #11	ENSBGRG00000024351 #12	FCGRT (ENSBGRG00000024262) #13	RCN3 (ENSBGRG00000024220) #14	ENSBGRG00000024196	NOSIP (ENSBGRG00000024116) #15	ENSBGRG00000024046 #16	ENSBGRG00000024015 #17	ENSBGRG00000023926 #17	RRAS (ENSBGRG00000023868) #18	ENSBGRG00000023836 #19	ENSBGRG00000023762 #19	IRF3 (ENSBGRG00000023684) #20	BCL2L12 (ENSBGRG00000023636)	PRMT1 (ENSBGRG00000023312) #22	ENSBGRG00000023243	CPT1C (ENSBGRG00000023169) #23	TSKS (ENSBGRG00000023079) #24	AP2A1 (ENSBGRG00000022434) #25	FUZ (ENSBGRG00000022030) #26	MED25 (ENSBGRG00000021696) #27	PTOV1 (ENSBGRG00000021493) #28	PNKP (ENSBGRG00000021234) #29	AKT1S1 (ENSBGRG00000021121) #30	TBC1D17 (ENSBGRG00000020970) #31	IL4I1 (ENSBGRG00000020877) #32	NUP62 (ENSBGRG00000020834) #33	ATF5 (ENSBGRG00000020773) #34	ENSBGRG00000020747	VRK3 (ENSBGRG00000020286) #35
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	27	SLC17A7 (ENSCHYG00000002123) #7	PIH1D1 (ENSCHYG00000002157) #8	ALDH16A1 (ENSCHYG00000002223) #9	FLT3LG (ENSCHYG00000002465) #10	ENSCHYG00000002487 #11	ENSCHYG00000002522	FCGRT (ENSCHYG00000002532) #13	RCN3 (ENSCHYG00000002553) #14	NOSIP (ENSCHYG00000002580) #15	PRRG2 (ENSCHYG00000002598) #16	PRR12 (ENSCHYG00000002616) #17	RRAS (ENSCHYG00000002642) #18	SCAF1 (ENSCHYG00000002660) #19	IRF3 (ENSCHYG00000002693) #20	BCL2L12 (ENSCHYG00000002735)	ENSCHYG00000002791 #22	ENSCHYG00000002874	CPT1C (ENSCHYG00000002891) #23	TSKS (ENSCHYG00000002916) #24	AP2A1 (ENSCHYG00000002955) #25	FUZ (ENSCHYG00000003042) #26	MED25 (ENSCHYG00000003152) #27	PTOV1 (ENSCHYG00000003241) #28	PNKP (ENSCHYG00000003327) #29	AKT1S1 (ENSCHYG00000003373) #30	TBC1D17 (ENSCHYG00000003408) #31	IL4I1 (ENSCHYG00000003457) #32	NUP62 (ENSCHYG00000003473) #33	ENSCHYG00000003487	ENSCHYG00000003506	VRK3 (ENSCHYG00000003577) #35
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000011802	ENSCHYG00000011782	ENSCHYG00000011732	ENSCHYG00000011704	ENSCHYG00000011597	ENSCHYG00000011559	CAB39 (ENSCHYG00000011507)	ENSCHYG00000011164	GPR55 (ENSCHYG00000011133)	SPATA3 (ENSCHYG00000011102)	C2orf72 (ENSCHYG00000011056)	HTR2B (ENSCHYG00000011019)	PSMD1 (ENSCHYG00000010484)	ARMC9 (ENSCHYG00000009411)	B3GNT7 (ENSCHYG00000009299)	ENSCHYG00000009172 #22	ENSCHYG00000021122	NMUR1 (ENSCHYG00000021055)	PTMA (ENSCHYG00000020863)	PDE6D (ENSCHYG00000020773)	COPS7B (ENSCHYG00000020525)	NPPC (ENSCHYG00000020448)	DIS3L2 (ENSCHYG00000020131)	ENSCHYG00000020061	ENSCHYG00000020024	ENSCHYG00000019940	ECEL1 (ENSCHYG00000019662)	PRSS56 (ENSCHYG00000019425)	CHRND (ENSCHYG00000019299)	CHRNG (ENSCHYG00000019022)	EIF4E2 (ENSCHYG00000018635)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Mustelinae	ANCESTRAL SPECIES	7	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Ferret	MODERN SPECIES	291	SLC17A7 (ENSMPUG00000002665) #7	PIH1D1 (ENSMPUG00000002657) #8	ALDH16A1 (ENSMPUG00000002650) #9	FLT3LG (ENSMPUG00000002613) #10	RPL13A (ENSMPUG00000002604) ##11	RPS11 (ENSMPUG00000002599) #12	FCGRT (ENSMPUG00000002596) #13	RCN3 (ENSMPUG00000002591) #14	NOSIP (ENSMPUG00000002583) #15	PRRG2 (ENSMPUG00000002578) #16	PRR12 (ENSMPUG00000002538) #17	RRAS (ENSMPUG00000002515) #18	SCAF1 (ENSMPUG00000002481) #19	IRF3 (ENSMPUG00000002477) #20	BCL2L12 (ENSMPUG00000002461)	PRMT1 (ENSMPUG00000002401) #22	CPT1C (ENSMPUG00000002399) #23	TSKS (ENSMPUG00000002382) #24	AP2A1 (ENSMPUG00000002373) #25	FUZ (ENSMPUG00000002370) #26	MED25 (ENSMPUG00000002366) #27	PTOV1 (ENSMPUG00000002341) #28	PNKP (ENSMPUG00000002313) #29	AKT1S1 (ENSMPUG00000002307) #30	TBC1D17 (ENSMPUG00000002304) #31	IL4I1 (ENSMPUG00000002299) #32	NUP62 (ENSMPUG00000019361) #33	ATF5 (ENSMPUG00000002298) #34	ENSMPUG00000002294	VRK3 (ENSMPUG00000002289) #35	ZNF473 (ENSMPUG00000002288) #36
American mink	MODERN SPECIES	135	SLC17A7 (ENSNVIG00000013475) #7	PIH1D1 (ENSNVIG00000013493) #8	A16A1 (ENSNVIG00000013514) #9	FLT3LG (ENSNVIG00000013636) #10	RPL13A (ENSNVIG00000013662) ##11	RPS11 (ENSNVIG00000013696) #12	FCGRT (ENSNVIG00000013729) #13	RCN3 (ENSNVIG00000013791) #14	NOSIP (ENSNVIG00000013805) #15	TMG2 (ENSNVIG00000013836) #16	PRR12 (ENSNVIG00000013877) #17	RRAS (ENSNVIG00000013892) #18	SCAF1 (ENSNVIG00000013902) #19	IRF3 (ENSNVIG00000013916) #20	BCL2L12 (ENSNVIG00000013961)	PRMT1 (ENSNVIG00000013974) #22	ENSNVIG00000014029	CPT1C (ENSNVIG00000014042) #23	ENSNVIG00000014121	TSKS (ENSNVIG00000014153) #24	AP2A1 (ENSNVIG00000014173) #25	FUZ (ENSNVIG00000014236) #26	MED25 (ENSNVIG00000014280) #27	PNKP (ENSNVIG00000014465) #29	AKT1S1 (ENSNVIG00000014694) #30	TBC1D17 (ENSNVIG00000014744) #31	IL4I1 (ENSNVIG00000014846) #32	NUP62 (ENSNVIG00000014915) #33	ATF5 (ENSNVIG00000014925) #34	ENSNVIG00000014945	VRK3 (ENSNVIG00000015072) #35
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154700.pc #22
Giant Panda	MODERN SPECIES	709																ENSAMEG00000025561 #22
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154700.qc.a #22
Giant Panda	MODERN SPECIES	1352																ENSAMEG00000027277 #22
Ursidae	ANCESTRAL SPECIES	30	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700.qc.b #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397.k #30	ENSGT00390000017397.l #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Giant Panda	MODERN SPECIES	3	SLC17A7 (ENSAMEG00000014111) #7	PIH1D1 (ENSAMEG00000014098) #8	ALDH16A1 (ENSAMEG00000014055) #9	ENSAMEG00000014041 #10	RPL13A (ENSAMEG00000014027) ##11	RPS11 (ENSAMEG00000014020) #12	ENSAMEG00000013998 #13	NOSIP (ENSAMEG00000013962) #15	RCN3 (ENSAMEG00000013976) #14	ENSAMEG00000013954 #16	PRR12 (ENSAMEG00000029999) #17	RRAS (ENSAMEG00000013931) #18	ENSAMEG00000013914 #19	IRF3 (ENSAMEG00000013892) #20	BCL2L12 (ENSAMEG00000013888)	PRMT1 (ENSAMEG00000013871) #22	ENSAMEG00000026436	CPT1C (ENSAMEG00000013819) #23	TSKS (ENSAMEG00000013807) #24	AP2A1 (ENSAMEG00000013743) #25	FUZ (ENSAMEG00000013731) #26	MED25 (ENSAMEG00000013694) #27	PTOV1 (ENSAMEG00000013684) #28	PNKP (ENSAMEG00000013669) #29	ENSAMEG00000031095 #30	TBC1D17 (ENSAMEG00000013612) #31	IL4I1 (ENSAMEG00000013573) #32	ENSAMEG00000025338 #33	ENSAMEG00000013546	ENSAMEG00000013521 #35	ZNF473 (ENSAMEG00000013519) #36
Ursus	ANCESTRAL SPECIES	13	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700.qc.b #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397.k #30	ENSGT00390000017397.l #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Polar bear	MODERN SPECIES	115	KASH5 (ENSUMAG00000001846)	SLC17A7 (ENSUMAG00000001869) #7	PIH1D1 (ENSUMAG00000001943) #8	ALDH16A1 (ENSUMAG00000001975) #9	FLT3LG (ENSUMAG00000002372) #10	ENSUMAG00000002385 ##11	RPS11 (ENSUMAG00000002394) #12	FCGRT (ENSUMAG00000002401) #13	RCN3 (ENSUMAG00000002431) #14	ENSUMAG00000002445 #15	ENSUMAG00000002454 #17	RRAS (ENSUMAG00000002464) #18	ENSUMAG00000002553 #19	IRF3 (ENSUMAG00000002587) #20	BCL2L12 (ENSUMAG00000002590)	PRMT1 (ENSUMAG00000002599) #22	ENSUMAG00000002609	CPT1C (ENSUMAG00000002617) #23	TSKS (ENSUMAG00000002694) #24	AP2A1 (ENSUMAG00000003074) #25	FUZ (ENSUMAG00000007031) #26	MED25 (ENSUMAG00000007065) #27	PNKP (ENSUMAG00000007091) #29	ENSUMAG00000007269 #30	TBC1D17 (ENSUMAG00000007279) #31	ATF5 (ENSUMAG00000007299) #34	ENSUMAG00000007305	VRK3 (ENSUMAG00000007311) #35	ZNF473 (ENSUMAG00000007322) #36	ENSUMAG00000007331	ENSUMAG00000007333
American black bear	DUPLICATION
American black bear	MODERN SPECIES	256									NOSIP (ENSUAMG00000007336) #15	PRRG2 (ENSUAMG00000007342) #16	PRR12 (ENSUAMG00000007347) #17	RRAS (ENSUAMG00000007370) #18	ENSUAMG00000007371 #19	IRF3 (ENSUAMG00000007393) #20	BCL2L12 (ENSUAMG00000007401)	ENSUAMG00000007446 #22	ENSUAMG00000007447	CPT1C (ENSUAMG00000007449) #23	TSKS (ENSUAMG00000007453) #24
American black bear	MODERN SPECIES	582														TLR8 (ENSUAMG00000026707)	TLR7 (ENSUAMG00000026706)	ENSUAMG00000026705 #22	PRPS2 (ENSUAMG00000026704)	FRMPD4 (ENSUAMG00000026702)
Canidae	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n.qb #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989.j #31	ENSGT00940000158989.i #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Red fox	MODERN SPECIES	101	SLC17A7 (ENSVVUG00000022638) #7	PIH1D1 (ENSVVUG00000022633) #8	ALDH16A1 (ENSVVUG00000022622) #9	FLT3LG (ENSVVUG00000022614) #10	RPL13A (ENSVVUG00000022597) ##11	RPS11 (ENSVVUG00000022590) #12	FCGRT (ENSVVUG00000022578) #13	RCN3 (ENSVVUG00000022571) #14	PRRG2 (ENSVVUG00000022563) #16	NOSIP (ENSVVUG00000022560) #15	PRR12 (ENSVVUG00000022528) #17	RRAS (ENSVVUG00000022504) #18	SCAF1 (ENSVVUG00000022453) #19	IRF3 (ENSVVUG00000022435) #20	BCL2L12 (ENSVVUG00000022403)	PRMT1 (ENSVVUG00000021435) #22	ADM5 (ENSVVUG00000021360)	CPT1C (ENSVVUG00000021351) #23	TSKS (ENSVVUG00000021336) #24	AP2A1 (ENSVVUG00000021313) #25	FUZ (ENSVVUG00000021304) #26	MED25 (ENSVVUG00000021296) #27	PTOV1 (ENSVVUG00000021273) #28	PNKP (ENSVVUG00000020724) #29	ENSVVUG00000020673 #31	AKT1S1 (ENSVVUG00000020665) #30	ENSVVUG00000020411 #31	IL4I1 (ENSVVUG00000020406) #32	ATF5 (ENSVVUG00000020402) #34	ENSVVUG00000020400	VRK3 (ENSVVUG00000020352) #35
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n.qb #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989.j #31	ENSGT00940000158989.i #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a
Dingo	MODERN SPECIES	125	SLC17A7 (ENSCAFG00020025100) #7	PIH1D1 (ENSCAFG00020025087) #8	ALDH16A1 (ENSCAFG00020024960) #9	ENSCAFG00020024917 ##11	RPS11 (ENSCAFG00020024909) #12	FCGRT (ENSCAFG00020024896) #13	RCN3 (ENSCAFG00020024895) #14	NOSIP (ENSCAFG00020024889) #15	PRRG2 (ENSCAFG00020024886) #16	ENSCAFG00020024885 #17	ENSCAFG00020024884 #17	RRAS (ENSCAFG00020024879) #18	ENSCAFG00020024859 #19	IRF3 (ENSCAFG00020024853) #20	BCL2L12 (ENSCAFG00020024844)	PRMT1 (ENSCAFG00020024443) #22	ADM5 (ENSCAFG00020024378)	CPT1C (ENSCAFG00020023872) #23	TSKS (ENSCAFG00020023817) #24	AP2A1 (ENSCAFG00020023376) #25	FUZ (ENSCAFG00020023265) #26	MED25 (ENSCAFG00020023185) #27	PTOV1 (ENSCAFG00020023177) #28	PNKP (ENSCAFG00020023058) #29	AKT1S1 (ENSCAFG00020023033) #30	TBC1D17 (ENSCAFG00020022343) #31	IL4I1 (ENSCAFG00020022292) #32	NUP62 (ENSCAFG00020022287) #33	ATF5 (ENSCAFG00020022286) #34	ENSCAFG00020022275	VRK3 (ENSCAFG00020022253) #35
Dog	DUPLICATION
Dog	MODERN SPECIES		SLC17A7 (ENSCAFG00845024908) #7	PIH1D1 (ENSCAFG00845024664) #8	ALDH16A1 (ENSCAFG00845024360) #9	FLT3LG (ENSCAFG00845024253) #10	RPL13A (ENSCAFG00845024086) ##11	RPS11 (ENSCAFG00845023961) #12	FCGRT (ENSCAFG00845023878) #13	RCN3 (ENSCAFG00845023834) #14	NOSIP (ENSCAFG00845023744) #15	PRRG2 (ENSCAFG00845023671) #16	PRR12 (ENSCAFG00845023579) #17	RRAS (ENSCAFG00845023497) #18	SCAF1 (ENSCAFG00845023416) #19	IRF3 (ENSCAFG00845023315) #20	BCL2L12 (ENSCAFG00845023183)	PRMT1 (ENSCAFG00845022617) #22	ADM5 (ENSCAFG00845022542)	CPT1C (ENSCAFG00845022213) #23	TSKS (ENSCAFG00845022049) #24	AP2A1 (ENSCAFG00845021617) #25	FUZ (ENSCAFG00845021309) #26	MED25 (ENSCAFG00845020944) #27	PTOV1 (ENSCAFG00845020796) #28	PNKP (ENSCAFG00845020569) #29	AKT1S1 (ENSCAFG00845020448) #30	TBC1D17 (ENSCAFG00845020253) #31	NUP62 (ENSCAFG00845020207) #33	IL4I1 (ENSCAFG00845020119) #32	ATF5 (ENSCAFG00845020078) #34	ENSCAFG00845020034	VRK3 (ENSCAFG00845019785) #35
Dog	MODERN SPECIES	28	ADTRP (ENSCAFG00845020946)	TMEM170B (ENSCAFG00845020894)	NEDD9 (ENSCAFG00845020672)	SMIM13 (ENSCAFG00845020618)	ELOVL2 (ENSCAFG00845020568)	SYCP2L (ENSCAFG00845020401)	GCM2 (ENSCAFG00845020331)	MAK (ENSCAFG00845020065)	ENSCAFG00845019919	PAK1IP1 (ENSCAFG00845019576)	ENSCAFG00845019493	GCNT2 (ENSCAFG00845019386)	TFAP2A (ENSCAFG00845019098)	ENSCAFG00845018859	ENSCAFG00845018795	ENSCAFG00845018729 #22	SLC35B3 (ENSCAFG00845018313)	ENSCAFG00845018157	ENSCAFG00845018125	EEF1E1 (ENSCAFG00845018087)	BLOC1S5 (ENSCAFG00845018047)	ENSCAFG00845017833	BMP6 (ENSCAFG00845017586)	SNRNP48 (ENSCAFG00845017442)	DSP (ENSCAFG00845017273)	ENSCAFG00845017231	RIOK1 (ENSCAFG00845017166)	CAGE1 (ENSCAFG00845017003)	SSR1 (ENSCAFG00845016889)	RREB1 (ENSCAFG00845016516)	LY86 (ENSCAFG00845016254)
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n.wb #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Cat	DUPLICATION
Cat	MODERN SPECIES	246	SLC17A7 (ENSFCAG00000023749) #7	PIH1D1 (ENSFCAG00000009191) #8	ALDH16A1 (ENSFCAG00000009193) #9	FLT3LG (ENSFCAG00000030375) #10	RPL13A (ENSFCAG00000009194) ##11	RPS11 (ENSFCAG00000009196) #12	FCGRT (ENSFCAG00000009199) #13	RCN3 (ENSFCAG00000000028) #14	NOSIP (ENSFCAG00000010497) #15	PRRG2 (ENSFCAG00000010498) #16	PRR12 (ENSFCAG00000025376) #17	RRAS (ENSFCAG00000024840) #18	SCAF1 (ENSFCAG00000045933) #19	IRF3 (ENSFCAG00000006074) #20	BCL2L12 (ENSFCAG00000034454)	PRMT1 (ENSFCAG00000006081) #22	ENSFCAG00000029354	CPT1C (ENSFCAG00000006084) #23	TSKS (ENSFCAG00000004426) #24	AP2A1 (ENSFCAG00000004429) #25	FUZ (ENSFCAG00000004433) #26	MED25 (ENSFCAG00000012164) #27	PTOV1 (ENSFCAG00000012170) #28	PNKP (ENSFCAG00000018550) #29	AKT1S1 (ENSFCAG00000039788) #30	TBC1D17 (ENSFCAG00000012173) #31	IL4I1 (ENSFCAG00000012174) #32	ATF5 (ENSFCAG00000045314) #34	ENSFCAG00000047261	VRK3 (ENSFCAG00000007968) #35	ENSFCAG00000048160 #36
Cat	MODERN SPECIES	248	DCAF8 (ENSFCAG00000003925)	PEA15 (ENSFCAG00000003924)	CASQ1 (ENSFCAG00000003923)	ATP1A4 (ENSFCAG00000005397)	IGSF8 (ENSFCAG00000003922)	KCNJ9 (ENSFCAG00000015120)	KCNJ10 (ENSFCAG00000043392)	PIGM (ENSFCAG00000008535)	IGSF9 (ENSFCAG00000031301)	TAGLN2 (ENSFCAG00000016255)	CFAP45 (ENSFCAG00000008529)	VSIG8 (ENSFCAG00000008527)	SLAMF8 (ENSFCAG00000008526)	FCRL6 (ENSFCAG00000027611)	DUSP23 (ENSFCAG00000044162)	ENSFCAG00000031034 #22	CRP (ENSFCAG00000029168)	APCS (ENSFCAG00000010503)	OR10J4 (ENSFCAG00000023747)	ENSFCAG00000023051	OR10J3 (ENSFCAG00000029247)	FCER1A (ENSFCAG00000015276)	ACKR1 (ENSFCAG00000018619)	CADM3 (ENSFCAG00000015269)	ENSFCAG00000031916	ENSFCAG00000052900	OR6N2 (ENSFCAG00000044911)	ENSFCAG00000015615	ENSFCAG00000013455	ENSFCAG00000013454	OR6K3 (ENSFCAG00000040462)
Panthera	ANCESTRAL SPECIES	20	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n.wb #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Tiger	DUPLICATION
Tiger	MODERN SPECIES	36	SLC17A7 (ENSPTIG00000019109) #7	PIH1D1 (ENSPTIG00000019309) #8	ALDH16A1 (ENSPTIG00000020037) #9	ENSPTIG00000021950 #10	ENSPTIG00000022003 #11	RPS11 (ENSPTIG00000002272) #12	FCGRT (ENSPTIG00000004003) #13	RCN3 (ENSPTIG00000007038) #14	ENSPTIG00000007453 #15	PRRG2 (ENSPTIG00000007792) #16	ENSPTIG00000008236 #17	RRAS (ENSPTIG00000011339) #18	ENSPTIG00000011785 #19	IRF3 (ENSPTIG00000012537) #20	ENSPTIG00000017895	PRMT1 (ENSPTIG00000019080) #22	ENSPTIG00000020152	CPT1C (ENSPTIG00000020349) #23	TSKS (ENSPTIG00000006061) #24	ENSPTIG00000007548 #25	FUZ (ENSPTIG00000007760) #26	ENSPTIG00000015583 #28	ENSPTIG00000018221 #29	ENSPTIG00000018509 #31	ENSPTIG00000018814 #31	ENSPTIG00000020305 #32	NUP62 (ENSPTIG00000020841) #33	VRK3 (ENSPTIG00000021041) #35	ENSPTIG00000021495 #36	ENSPTIG00000005377	IZUMO2 (ENSPTIG00000021569) #37
Tiger	MODERN SPECIES	15	NEDD9 (ENSPTIG00000020169)	SMIM13 (ENSPTIG00000021553)	ELOVL2 (ENSPTIG00000021641)	SYCP2L (ENSPTIG00000001094)	GCM2 (ENSPTIG00000008744)	MAK (ENSPTIG00000009730)	TMEM14C (ENSPTIG00000014497)	PAK1IP1 (ENSPTIG00000014765)	C6orf52 (ENSPTIG00000015425)	GCNT2 (ENSPTIG00000016061)	ENSPTIG00000016215	TFAP2A (ENSPTIG00000016483)	ENSPTIG00000017987	ENSPTIG00000018659	SLC35B3 (ENSPTIG00000019956)	ENSPTIG00000001180 #22	EEF1E1 (ENSPTIG00000003209)	BLOC1S5 (ENSPTIG00000006195)	TXNDC5 (ENSPTIG00000008525)	BMP6 (ENSPTIG00000009664)	SNRNP48 (ENSPTIG00000013502)	DSP (ENSPTIG00000014227)	ENSPTIG00000018301	RIOK1 (ENSPTIG00000018545)	CAGE1 (ENSPTIG00000019168)	SSR1 (ENSPTIG00000006156)	LY86 (ENSPTIG00000014095)	F13A1 (ENSPTIG00000014413)	NRN1 (ENSPTIG00000015277)	FARS2 (ENSPTIG00000016684)	LYRM4 (ENSPTIG00000018145)
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.b ##11	ENSGT00390000002732.n.wb #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
lion	DUPLICATION
lion	MODERN SPECIES	15	NKPD1 (ENSPLOG00000006206)	TRAPPC6A (ENSPLOG00000006245)	EXOC3L2 (ENSPLOG00000006300)	MARK4 (ENSPLOG00000006356)	CKM (ENSPLOG00000006406)	KLC3 (ENSPLOG00000006444)	ERCC2 (ENSPLOG00000006584)	PPP1R13L (ENSPLOG00000006777)	NOSIP (ENSPLOG00000006833) #15	PRRG2 (ENSPLOG00000006869) #16	PRR12 (ENSPLOG00000006927) #17	RRAS (ENSPLOG00000006992) #18	SCAF1 (ENSPLOG00000007025) #19	IRF3 (ENSPLOG00000007056) #20	BCL2L12 (ENSPLOG00000007139)	PRMT1 (ENSPLOG00000007276) #22	ENSPLOG00000007411	CPT1C (ENSPLOG00000007450) #23	TSKS (ENSPLOG00000007572) #24	AP2A1 (ENSPLOG00000007711) #25	FUZ (ENSPLOG00000007807) #26	MED25 (ENSPLOG00000008045) #27	PTOV1 (ENSPLOG00000008148) #28	PNKP (ENSPLOG00000008218) #29	AKT1S1 (ENSPLOG00000008339) #30	TBC1D17 (ENSPLOG00000008421) #31	IL4I1 (ENSPLOG00000008612) #32	NUP62 (ENSPLOG00000008706) #33	ATF5 (ENSPLOG00000008740) #34	ENSPLOG00000008795	VRK3 (ENSPLOG00000009002) #35
lion	MODERN SPECIES	28	ENSPLOG00000015652	ADTRP (ENSPLOG00000015607)	TMEM170B (ENSPLOG00000015571)	NEDD9 (ENSPLOG00000015418)	SMIM13 (ENSPLOG00000015335)	ELOVL2 (ENSPLOG00000015241)	SYCP2L (ENSPLOG00000014969)	GCM2 (ENSPLOG00000014873)	MAK (ENSPLOG00000014775)	TMEM14C (ENSPLOG00000014694)	PAK1IP1 (ENSPLOG00000014566)	ENSPLOG00000014487	ENSPLOG00000014364	TFAP2A (ENSPLOG00000014182)	ENSPLOG00000014020	ENSPLOG00000013926 #22	SLC35B3 (ENSPLOG00000013879)	EEF1E1 (ENSPLOG00000013833)	BLOC1S5 (ENSPLOG00000013761)	TXNDC5 (ENSPLOG00000013690)	BMP6 (ENSPLOG00000013558)	SNRNP48 (ENSPLOG00000013502)	DSP (ENSPLOG00000013167)	RIOK1 (ENSPLOG00000013095)	CAGE1 (ENSPLOG00000012826)	SSR1 (ENSPLOG00000012706)	RREB1 (ENSPLOG00000019420)	LY86 (ENSPLOG00000019367)	ENSPLOG00000019351	F13A1 (ENSPLOG00000019314)	NRN1 (ENSPLOG00000019270)
leopard	DUPLICATION
leopard	MODERN SPECIES	103	GFY (ENSPPRG00000006208)	SLC17A7 (ENSPPRG00000007058) #7	PIH1D1 (ENSPPRG00000007680) #8	ALDH16A1 (ENSPPRG00000009904) #9	FLT3LG (ENSPPRG00000010392) #10	ENSPPRG00000011265 ##11	RPS11 (ENSPPRG00000012091) #12	FCGRT (ENSPPRG00000013062) #13	RCN3 (ENSPPRG00000013222) #14	NOSIP (ENSPPRG00000014345) #15	PRRG2 (ENSPPRG00000015395) #16	RRAS (ENSPPRG00000020676) #18	SCAF1 (ENSPPRG00000023162) #19	IRF3 (ENSPPRG00000003901) #20	BCL2L12 (ENSPPRG00000006198)	PRMT1 (ENSPPRG00000007371) #22	ENSPPRG00000008136 #22	ENSPPRG00000008239	CPT1C (ENSPPRG00000009392) #23	TSKS (ENSPPRG00000010063) #24	AP2A1 (ENSPPRG00000012521) #25	FUZ (ENSPPRG00000015640) #26	MED25 (ENSPPRG00000001130) #27	PTOV1 (ENSPPRG00000005802) #28	PNKP (ENSPPRG00000009389) #29	AKT1S1 (ENSPPRG00000010679) #30	TBC1D17 (ENSPPRG00000012804) #31	IL4I1 (ENSPPRG00000013697) #32	ENSPPRG00000020072	VRK3 (ENSPPRG00000015169) #35	ENSPPRG00000015244 #36
leopard	MODERN SPECIES	79															SLC35B3 (ENSPPRG00000006882)	ENSPPRG00000006743 #22	ENSPPRG00000005821	BLOC1S5 (ENSPPRG00000005122)	TXNDC5 (ENSPPRG00000004740)	BMP6 (ENSPPRG00000004373)	SNRNP48 (ENSPPRG00000004283)	DSP (ENSPPRG00000003684)	RIOK1 (ENSPPRG00000001932)	CAGE1 (ENSPPRG00000001510)	SSR1 (ENSPPRG00000013065)	RREB1 (ENSPPRG00000012144)	LY86 (ENSPPRG00000008801)	F13A1 (ENSPPRG00000007966)	NRN1 (ENSPPRG00000007267)	ENSPPRG00000006505	FARS2 (ENSPPRG00000006027)
leopard	MODERN SPECIES	103	SLC17A7 (ENSPPRG00000007058) #7	PIH1D1 (ENSPPRG00000007680) #8	ALDH16A1 (ENSPPRG00000009904) #9	FLT3LG (ENSPPRG00000010392) #10	ENSPPRG00000011265 ##11	RPS11 (ENSPPRG00000012091) #12	FCGRT (ENSPPRG00000013062) #13	RCN3 (ENSPPRG00000013222) #14	NOSIP (ENSPPRG00000014345) #15	PRRG2 (ENSPPRG00000015395) #16	RRAS (ENSPPRG00000020676) #18	SCAF1 (ENSPPRG00000023162) #19	IRF3 (ENSPPRG00000003901) #20	BCL2L12 (ENSPPRG00000006198)	PRMT1 (ENSPPRG00000007371) #22	ENSPPRG00000008136 #22	ENSPPRG00000008239	CPT1C (ENSPPRG00000009392) #23	TSKS (ENSPPRG00000010063) #24	AP2A1 (ENSPPRG00000012521) #25	FUZ (ENSPPRG00000015640) #26	MED25 (ENSPPRG00000001130) #27	PTOV1 (ENSPPRG00000005802) #28	PNKP (ENSPPRG00000009389) #29	AKT1S1 (ENSPPRG00000010679) #30	TBC1D17 (ENSPPRG00000012804) #31	IL4I1 (ENSPPRG00000013697) #32	ENSPPRG00000020072	VRK3 (ENSPPRG00000015169) #35	ENSPPRG00000015244 #36	ENSPPRG00000020181
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B.p.a #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B.p.a #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Megabat	MODERN SPECIES	3816	SLC17A7 (ENSPVAG00000010952) #7	PIH1D1 (ENSPVAG00000010953) #8	ALDH16A1 (ENSPVAG00000010955) #9	FLT3LG (ENSPVAG00000010957) #10	RPL13A (ENSPVAG00000010958) ##11	ENSPVAG00000010959	FCGRT (ENSPVAG00000010960) #13	RCN3 (ENSPVAG00000010961) #14	NOSIP (ENSPVAG00000010962) #15	PRRG2 (ENSPVAG00000010963) #16	PRR12 (ENSPVAG00000010965) #17	RRAS (ENSPVAG00000010966) #18	SCAF1 (ENSPVAG00000010967) #19	IRF3 (ENSPVAG00000010968) #20	BCL2L12 (ENSPVAG00000010969)	PRMT1 (ENSPVAG00000010970) #22	CPT1C (ENSPVAG00000010971) #23	TSKS (ENSPVAG00000010972) #24	AP2A1 (ENSPVAG00000010973) #25	FUZ (ENSPVAG00000010974) #26	MED25 (ENSPVAG00000010975) #27	PTOV1 (ENSPVAG00000010976) #28	PNKP (ENSPVAG00000010980) #29	AKT1S1 (ENSPVAG00000010983) #30	TBC1D17 (ENSPVAG00000010985) #31	IL4I1 (ENSPVAG00000010988) #32
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B.p.a #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Greater horseshoe bat	MODERN SPECIES	6	SLC17A7 (ENSRFEG00010008954) #7	PIH1D1 (ENSRFEG00010009002) #8	ALDH16A1 (ENSRFEG00010009144) #9	FLT3LG (ENSRFEG00010009320) #10	RPL13A (ENSRFEG00010009364) ##11	ENSRFEG00010009427 #12	FCGRT (ENSRFEG00010009551) #13	RCN3 (ENSRFEG00010009608) #14	NOSIP (ENSRFEG00010009649) #15	PRRG2 (ENSRFEG00010009690) #16	PRR12 (ENSRFEG00010009738) #17	RRAS (ENSRFEG00010009871) #18	SCAF1 (ENSRFEG00010009912) #19	IRF3 (ENSRFEG00010009958) #20	BCL2L12 (ENSRFEG00010010039)	PRMT1 (ENSRFEG00010010147) #22	CPT1C (ENSRFEG00010010276) #23	TSKS (ENSRFEG00010010392) #24	AP2A1 (ENSRFEG00010010576) #25	FUZ (ENSRFEG00010010654) #26	MED25 (ENSRFEG00010010795) #27	PTOV1 (ENSRFEG00010011047) #28	PNKP (ENSRFEG00010011111) #29	AKT1S1 (ENSRFEG00010011184) #30	TBC1D17 (ENSRFEG00010011302) #31	IL4I1 (ENSRFEG00010011805) #32	NUP62 (ENSRFEG00010011827) #33	ATF5 (ENSRFEG00010011850) #34	ENSRFEG00010011885	VRK3 (ENSRFEG00010011933) #35	ZNF473 (ENSRFEG00010012054) #36
Microbat	DUPLICATION
Microbat	MODERN SPECIES	2646																PRMT1 (ENSMLUG00000026704) #22	ENSMLUG00000017098 #23
Microbat	MODERN SPECIES	210																ENSMLUG00000017092 #22
Equus	ANCESTRAL SPECIES	1	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.m.a ##12	ENSGT00390000010799.u.b.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B.p.a #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35
Horse	MODERN SPECIES	1	SLC17A7 (ENSECAG00000008206) #7	PIH1D1 (ENSECAG00000021267) #8	ALDH16A1 (ENSECAG00000023437) #9	ENSECAG00000038488 #10	RPL13A (ENSECAG00000015832) ##11	RPS11 (ENSECAG00000000370) ##12	FCGRT (ENSECAG00000002855) #13	RCN3 (ENSECAG00000010512) #14	NOSIP (ENSECAG00000010590) #15	PRRG2 (ENSECAG00000011504) #16	ENSECAG00000012525 #17	RRAS (ENSECAG00000016716) #18	ENSECAG00000017909 #19	IRF3 (ENSECAG00000018265) #20	BCL2L12 (ENSECAG00000022614)	PRMT1 (ENSECAG00000024076) #22	CPT1C (ENSECAG00000015556) #23	TSKS (ENSECAG00000023945) #24	AP2A1 (ENSECAG00000007134) #25	FUZ (ENSECAG00000019538) #26	MED25 (ENSECAG00000008563) #27	PTOV1 (ENSECAG00000014505) #28	PNKP (ENSECAG00000017461) #29	AKT1S1 (ENSECAG00000023285) #30	TBC1D17 (ENSECAG00000000665) #31	IL4I1 (ENSECAG00000018105) #32	NUP62 (ENSECAG00000006129) #33	ATF5 (ENSECAG00000018168) #34	ENSECAG00000019222	VRK3 (ENSECAG00000020568) #35	ZNF473 (ENSECAG00000023381) #36
Donkey	MODERN SPECIES	18	PIH1D1 (ENSEASG00005004996) #8	ALDH16A1 (ENSEASG00005004997) #9	ENSEASG00005005002 #10	ENSEASG00005005007 ##11	RPS11 (ENSEASG00005034777) #12	FCGRT (ENSEASG00005005020) #13	RCN3 (ENSEASG00005005046) #14	NOSIP (ENSEASG00005005049) #15	PRRG2 (ENSEASG00005005054) #16	ENSEASG00005037867 #17	ENSEASG00005035361 #17	RRAS (ENSEASG00005005083) #18	SCAF1 (ENSEASG00005005102) #19	IRF3 (ENSEASG00005005140) #20	BCL2L12 (ENSEASG00005005229)	PRMT1 (ENSEASG00005005297) #22	ENSEASG00005030277	CPT1C (ENSEASG00005005975) #23	TSKS (ENSEASG00005026212) #24	AP2A1 (ENSEASG00005006948) #25	FUZ (ENSEASG00005007539) #26	MED25 (ENSEASG00005007549) #27	PTOV1 (ENSEASG00005007600) #28	PNKP (ENSEASG00005007616) #29	AKT1S1 (ENSEASG00005007647) #30	TBC1D17 (ENSEASG00005007710) #31	IL4I1 (ENSEASG00005008275) #32	NUP62 (ENSEASG00005008278) #33	ATF5 (ENSEASG00005025978) #34	ENSEASG00005023663	VRK3 (ENSEASG00005008283) #35
Eulipotyphla	ANCESTRAL SPECIES	122														ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24
Hedgehog	MODERN SPECIES	2551																ENSEEUG00000013386 #22
Common shrew	MODERN SPECIES	1875														IRF3 (ENSSARG00000006248) #20	BCL2L12 (ENSSARG00000006262)	PRMT1 (ENSSARG00000006282) #22	CPT1C (ENSSARG00000006297) #23	TSKS (ENSSARG00000006350) #24	ENSSARG00000006362 #26
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT00940000175482	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34
Tree shrew	MODERN SPECIES	1163											PRRG2 (ENSTBEG00000009451) #16	ENSTBEG00000009565 #17	SCAF1 (ENSTBEG00000002625) #19	ENSTBEG00000003466 #20	BCL2L12 (ENSTBEG00000003752)	PRMT1 (ENSTBEG00000005303) #22
Glires	ANCESTRAL SPECIES	6	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Lagomorpha	ANCESTRAL SPECIES	394														ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23
Rabbit	MODERN SPECIES	872			ENSOCUG00000011123	PTH2 (ENSOCUG00000027010)	GFY (ENSOCUG00000031284)	SLC17A7 (ENSOCUG00000012799) #7	PIH1D1 (ENSOCUG00000003821) #8	ALDH16A1 (ENSOCUG00000026756) #9	RPL13A (ENSOCUG00000025258) ##11	FCGRT (ENSOCUG00000024751) #13	NOSIP (ENSOCUG00000027829) #15	ENSOCUG00000038726	ENSOCUG00000021401 #19	ENSOCUG00000027558	BCL2L12 (ENSOCUG00000010676)	PRMT1 (ENSOCUG00000022192) #22
Pika	MODERN SPECIES	892														IRF3 (ENSOPRG00000001971) #20	BCL2L12 (ENSOPRG00000001983)	PRMT1 (ENSOPRG00000002011) #22	CPT1C (ENSOPRG00000002029) #23
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Rodentia_B	ANCESTRAL SPECIES	34	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36	ENSGT00390000015068 #37
Kangaroo rat	MODERN SPECIES	424	Pth2 (ENSDORG00000013590)	ENSDORG00000028515	Slc17a7 (ENSDORG00000013592) #7	Pih1d1 (ENSDORG00000013596) #8	Aldh16a1 (ENSDORG00000013597) #9	Rpl13a (ENSDORG00000012194) ##11	ENSDORG00000012195 #12	Rcn3 (ENSDORG00000012197) #14	ENSDORG00000001351 #15	Prrg2 (ENSDORG00000000079) #16	Prr12 (ENSDORG00000014917) #17	Rras (ENSDORG00000014918) #18	Scaf1 (ENSDORG00000014919) #19	Irf3 (ENSDORG00000014920) #20	Bcl2l12 (ENSDORG00000014921)	Prmt1 (ENSDORG00000014923) #22	ENSDORG00000014925 #23	ENSDORG00000027048 #23	Tsks (ENSDORG00000014926) #24	Ap2a1 (ENSDORG00000014931) #25	Fuz (ENSDORG00000014940) #26	ENSDORG00000027418 #27	ENSDORG00000029463 #28	Pnkp (ENSDORG00000014945) #29	Akt1s1 (ENSDORG00000014947) #30	ENSDORG00000026351 #31	ENSDORG00000014948 #31	Il4i1 (ENSDORG00000014950) #32	Nup62 (ENSDORG00000014951) #33	Atf5 (ENSDORG00000028077) #34	Vrk3 (ENSDORG00000002810) #35
Myomorpha	ANCESTRAL SPECIES	39	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36	ENSGT00390000015068 #37
Lesser Egyptian jerboa	MODERN SPECIES	228	Slc17a7 (ENSJJAG00000003062) #7	Pih1d1 (ENSJJAG00000024001) #8	Aldh16a1 (ENSJJAG00000015970) #9	ENSJJAG00000011073 #10	Rpl13a (ENSJJAG00000000343) ##11	Rps11 (ENSJJAG00000021986) #12	Fcgrt (ENSJJAG00000023789) #13	Rcn3 (ENSJJAG00000023309) #14	ENSJJAG00000023221 #15	Prrg2 (ENSJJAG00000020611) #16	Prr12 (ENSJJAG00000003240) #17	Rras (ENSJJAG00000000707) #18	Scaf1 (ENSJJAG00000020045) #19	ENSJJAG00000018742 #20	Bcl2l12 (ENSJJAG00000017216)	Prmt1 (ENSJJAG00000018374) #22	Cpt1c (ENSJJAG00000009112) #23	Tsks (ENSJJAG00000004998) #24	Ap2a1 (ENSJJAG00000024079) #25	Fuz (ENSJJAG00000021197) #26	ENSJJAG00000018751 #27	Ptov1 (ENSJJAG00000013264) #28	Pnkp (ENSJJAG00000010976) #29	Akt1s1 (ENSJJAG00000007281) #30	ENSJJAG00000004161 #31	ENSJJAG00000023850 #31	Nup62 (ENSJJAG00000015756) #33	Atf5 (ENSJJAG00000015377) #34
Muroidea	ANCESTRAL SPECIES	41	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36	ENSGT00390000015068 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1286	Slc17a7 (ENSNGAG00000021921) #7	Pih1d1 (ENSNGAG00000021616) #8	Aldh16a1 (ENSNGAG00000022707) #9	Flt3l (ENSNGAG00000003724) #10	Rpl13a (ENSNGAG00000021984) ##11	Rps11 (ENSNGAG00000021376) #12	Fcgrt (ENSNGAG00000020635) #13	Rcn3 (ENSNGAG00000022084) #14	Nosip (ENSNGAG00000018058) #15	Prrg2 (ENSNGAG00000023084) #16	Prr12 (ENSNGAG00000023139) #17	Rras (ENSNGAG00000015476) #18	Scaf1 (ENSNGAG00000009448) #19	Irf3 (ENSNGAG00000022121) #20	Bcl2l12 (ENSNGAG00000013191)	Prmt1 (ENSNGAG00000018656) #22	Cpt1c (ENSNGAG00000022950) #23	Tsks (ENSNGAG00000007904) #24	Ap2a1 (ENSNGAG00000017671) #25	Fuz (ENSNGAG00000021167) #26	Med25 (ENSNGAG00000021950) #27	ENSNGAG00000022507 #28	Pnkp (ENSNGAG00000013598) #29	Akt1s1 (ENSNGAG00000008683) #30	ENSNGAG00000023215 #31	Il4i1 (ENSNGAG00000008304) #32	Nup62 (ENSNGAG00000020299) #33	Atf5 (ENSNGAG00000023365) #34	Vrk3 (ENSNGAG00000013641) #35	Izumo2 (ENSNGAG00000020951) #37	Myh14 (ENSNGAG00000014917)
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Murinae	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Mus	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Mus_B	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v.g ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Mouse	MODERN SPECIES	16	Pih1d1 (ENSMUSG00000003423) #8	Aldh16a1 (ENSMUSG00000007833) #9	Flt3l (ENSMUSG00000110206) #10	Gm45713 (ENSMUSG00000089989)	Rpl13a (ENSMUSG00000074129) ##11	Rps11 (ENSMUSG00000003429) #12	Fcgrt (ENSMUSG00000003420) #13	Rcn3 (ENSMUSG00000019539) #14	Nosip (ENSMUSG00000003421) #15	Prrg2 (ENSMUSG00000007837) #16	Prr12 (ENSMUSG00000046574) #17	Rras (ENSMUSG00000038387) #18	Scaf1 (ENSMUSG00000038406) #19	Irf3 (ENSMUSG00000003184) #20	Bcl2l12 (ENSMUSG00000003190)	Prmt1 (ENSMUSG00000109324) #22	Cpt1c (ENSMUSG00000007783) #23	Tsks (ENSMUSG00000059891) #24	Ap2a1 (ENSMUSG00000060279) #25	Fuz (ENSMUSG00000011658) #26	Med25 (ENSMUSG00000002968) #27	Ptov1 (ENSMUSG00000038502) #28	Pnkp (ENSMUSG00000002963) #29	Akt1s1 (ENSMUSG00000011096) #30	Tbc1d17 (ENSMUSG00000038520) #31	Il4i1 (ENSMUSG00000074141) #32	Nup62 (ENSMUSG00000109511) #33	Atf5 (ENSMUSG00000038539) #34	Vrk3 (ENSMUSG00000002205) #35	Zfp473 (ENSMUSG00000048012) #36	Izumo2 (ENSMUSG00000066500) #37
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v.g ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
spretus	DUPLICATION
spretus	MODERN SPECIES	16	Pih1d1 (MGP_SPRETEiJ_G0030799) #8	Aldh16a1 (MGP_SPRETEiJ_G0030798) #9	MGP_SPRETEiJ_G0030797 #10	MGP_SPRETEiJ_G0030796 ##11	Rps11 (MGP_SPRETEiJ_G0030795) #12	Fcgrt (MGP_SPRETEiJ_G0030794) #13	Rcn3 (MGP_SPRETEiJ_G0030793) #14	Nosip (MGP_SPRETEiJ_G0030792) #15	Prrg2 (MGP_SPRETEiJ_G0030791) #16	Prr12 (MGP_SPRETEiJ_G0030790) #17	Rras (MGP_SPRETEiJ_G0030789) #18	Scaf1 (MGP_SPRETEiJ_G0030788) #19	Irf3 (MGP_SPRETEiJ_G0030787) #20	Bcl2l12 (MGP_SPRETEiJ_G0030786)	MGP_SPRETEiJ_G0030785 #22	MGP_SPRETEiJ_G0030784 #22	Cpt1c (MGP_SPRETEiJ_G0030783) #23	MGP_SPRETEiJ_G0030782 #24	Fuz (MGP_SPRETEiJ_G0030781) #26	Ap2a1 (MGP_SPRETEiJ_G0030780) #25	Med25 (MGP_SPRETEiJ_G0030779) #27	Ptov1 (MGP_SPRETEiJ_G0030778) #28	Pnkp (MGP_SPRETEiJ_G0030777) #29	Akt1s1 (MGP_SPRETEiJ_G0030776) #30	Tbc1d17 (MGP_SPRETEiJ_G0030775) #31	Il4i1 (MGP_SPRETEiJ_G0030774) #32	Atf5 (MGP_SPRETEiJ_G0030773) #34	Vrk3 (MGP_SPRETEiJ_G0030772) #35	Zfp473 (MGP_SPRETEiJ_G0030771) #36	Izumo2 (MGP_SPRETEiJ_G0030770) #37	MGP_SPRETEiJ_G0030769
spretus	MODERN SPECIES	16	Slc17a7 (MGP_SPRETEiJ_G0030800) #7	Pih1d1 (MGP_SPRETEiJ_G0030799) #8	Aldh16a1 (MGP_SPRETEiJ_G0030798) #9	MGP_SPRETEiJ_G0030797 #10	MGP_SPRETEiJ_G0030796 ##11	Rps11 (MGP_SPRETEiJ_G0030795) #12	Fcgrt (MGP_SPRETEiJ_G0030794) #13	Rcn3 (MGP_SPRETEiJ_G0030793) #14	Nosip (MGP_SPRETEiJ_G0030792) #15	Prrg2 (MGP_SPRETEiJ_G0030791) #16	Prr12 (MGP_SPRETEiJ_G0030790) #17	Rras (MGP_SPRETEiJ_G0030789) #18	Scaf1 (MGP_SPRETEiJ_G0030788) #19	Irf3 (MGP_SPRETEiJ_G0030787) #20	Bcl2l12 (MGP_SPRETEiJ_G0030786)	MGP_SPRETEiJ_G0030785 #22	MGP_SPRETEiJ_G0030784 #22	Cpt1c (MGP_SPRETEiJ_G0030783) #23	MGP_SPRETEiJ_G0030782 #24	Fuz (MGP_SPRETEiJ_G0030781) #26	Ap2a1 (MGP_SPRETEiJ_G0030780) #25	Med25 (MGP_SPRETEiJ_G0030779) #27	Ptov1 (MGP_SPRETEiJ_G0030778) #28	Pnkp (MGP_SPRETEiJ_G0030777) #29	Akt1s1 (MGP_SPRETEiJ_G0030776) #30	Tbc1d17 (MGP_SPRETEiJ_G0030775) #31	Il4i1 (MGP_SPRETEiJ_G0030774) #32	Atf5 (MGP_SPRETEiJ_G0030773) #34	Vrk3 (MGP_SPRETEiJ_G0030772) #35	Zfp473 (MGP_SPRETEiJ_G0030771) #36	Izumo2 (MGP_SPRETEiJ_G0030770) #37
Steppe mouse	MODERN SPECIES	2865	ENSMSIG00000020069 #7	Pih1d1 (ENSMSIG00000020099) #8	Aldh16a1 (ENSMSIG00000020116) #9	Flt3l (ENSMSIG00000020203) #10	ENSMSIG00000020261 ##11	ENSMSIG00000020310 #12	Fcgrt (ENSMSIG00000020357) #13	Rcn3 (ENSMSIG00000020381) #14	Nosip (ENSMSIG00000020392) #15	Prrg2 (ENSMSIG00000020460) #16	Prr12 (ENSMSIG00000020493) #17	Rras (ENSMSIG00000020541) #18	Scaf1 (ENSMSIG00000020578) #19	Irf3 (ENSMSIG00000020627) #20	Bcl2l12 (ENSMSIG00000020678)	Prmt1 (ENSMSIG00000020718) #22	Cpt1c (ENSMSIG00000020889) #23	Tsks (ENSMSIG00000020920) #24	Ap2a1 (ENSMSIG00000020986) #25	Fuz (ENSMSIG00000021162) #26	ENSMSIG00000021217	Med25 (ENSMSIG00000021224) #27	Ptov1 (ENSMSIG00000021311) #28	Pnkp (ENSMSIG00000021391) #29	Akt1s1 (ENSMSIG00000021526) #30	Tbc1d17 (ENSMSIG00000021563) #31	Il4i1 (ENSMSIG00000021614) #32	Nup62 (ENSMSIG00000021640) #33	Atf5 (ENSMSIG00000021644) #34
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	16	Pih1d1 (MGP_CAROLIEiJ_G0029701) #8	Aldh16a1 (MGP_CAROLIEiJ_G0029700) #9	MGP_CAROLIEiJ_G0029699 #10	Rpl13a (MGP_CAROLIEiJ_G0029698) ##11	Rps11 (MGP_CAROLIEiJ_G0029697) #12	Fcgrt (MGP_CAROLIEiJ_G0029696) #13	Rcn3 (MGP_CAROLIEiJ_G0029695) #14	Nosip (MGP_CAROLIEiJ_G0029694) #15	Prrg2 (MGP_CAROLIEiJ_G0029693) #16	Prr12 (MGP_CAROLIEiJ_G0029692) #17	Rras (MGP_CAROLIEiJ_G0029691) #18	Scaf1 (MGP_CAROLIEiJ_G0029690) #19	Irf3 (MGP_CAROLIEiJ_G0029689) #20	Bcl2l12 (MGP_CAROLIEiJ_G0029688)	MGP_CAROLIEiJ_G0029687 #22	MGP_CAROLIEiJ_G0029686 #22	Cpt1c (MGP_CAROLIEiJ_G0029685) #23	Tsks (MGP_CAROLIEiJ_G0029684) #24	Ap2a1 (MGP_CAROLIEiJ_G0029683) #25	Fuz (MGP_CAROLIEiJ_G0029682) #26	Med25 (MGP_CAROLIEiJ_G0029681) #27	Ptov1 (MGP_CAROLIEiJ_G0029680) #28	Pnkp (MGP_CAROLIEiJ_G0029679) #29	Akt1s1 (MGP_CAROLIEiJ_G0029678) #30	Tbc1d17 (MGP_CAROLIEiJ_G0029677) #31	Il4i1 (MGP_CAROLIEiJ_G0029676) #32	Atf5 (MGP_CAROLIEiJ_G0029675) #34	Vrk3 (MGP_CAROLIEiJ_G0029674) #35	Zfp473 (MGP_CAROLIEiJ_G0029673) #36	Izumo2 (MGP_CAROLIEiJ_G0029672) #37	MGP_CAROLIEiJ_G0029671
Ryukyu mouse	MODERN SPECIES	16	Slc17a7 (MGP_CAROLIEiJ_G0029702) #7	Pih1d1 (MGP_CAROLIEiJ_G0029701) #8	Aldh16a1 (MGP_CAROLIEiJ_G0029700) #9	MGP_CAROLIEiJ_G0029699 #10	Rpl13a (MGP_CAROLIEiJ_G0029698) ##11	Rps11 (MGP_CAROLIEiJ_G0029697) #12	Fcgrt (MGP_CAROLIEiJ_G0029696) #13	Rcn3 (MGP_CAROLIEiJ_G0029695) #14	Nosip (MGP_CAROLIEiJ_G0029694) #15	Prrg2 (MGP_CAROLIEiJ_G0029693) #16	Prr12 (MGP_CAROLIEiJ_G0029692) #17	Rras (MGP_CAROLIEiJ_G0029691) #18	Scaf1 (MGP_CAROLIEiJ_G0029690) #19	Irf3 (MGP_CAROLIEiJ_G0029689) #20	Bcl2l12 (MGP_CAROLIEiJ_G0029688)	MGP_CAROLIEiJ_G0029687 #22	MGP_CAROLIEiJ_G0029686 #22	Cpt1c (MGP_CAROLIEiJ_G0029685) #23	Tsks (MGP_CAROLIEiJ_G0029684) #24	Ap2a1 (MGP_CAROLIEiJ_G0029683) #25	Fuz (MGP_CAROLIEiJ_G0029682) #26	Med25 (MGP_CAROLIEiJ_G0029681) #27	Ptov1 (MGP_CAROLIEiJ_G0029680) #28	Pnkp (MGP_CAROLIEiJ_G0029679) #29	Akt1s1 (MGP_CAROLIEiJ_G0029678) #30	Tbc1d17 (MGP_CAROLIEiJ_G0029677) #31	Il4i1 (MGP_CAROLIEiJ_G0029676) #32	Atf5 (MGP_CAROLIEiJ_G0029675) #34	Vrk3 (MGP_CAROLIEiJ_G0029674) #35	Zfp473 (MGP_CAROLIEiJ_G0029673) #36	Izumo2 (MGP_CAROLIEiJ_G0029672) #37
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES		Pih1d1 (MGP_PahariEiJ_G0012926) #8	Aldh16a1 (MGP_PahariEiJ_G0012925) #9	MGP_PahariEiJ_G0012924 #10	Rpl13a (MGP_PahariEiJ_G0012923) ##11	Rps11 (MGP_PahariEiJ_G0012922) #12	Fcgrt (MGP_PahariEiJ_G0012921) #13	Rcn3 (MGP_PahariEiJ_G0012920) #14	Nosip (MGP_PahariEiJ_G0012919) #15	Prrg2 (MGP_PahariEiJ_G0012918) #16	Prr12 (MGP_PahariEiJ_G0012917) #17	Rras (MGP_PahariEiJ_G0012916) #18	Scaf1 (MGP_PahariEiJ_G0012915) #19	Irf3 (MGP_PahariEiJ_G0012914) #20	Bcl2l12 (MGP_PahariEiJ_G0012913)	MGP_PahariEiJ_G0012912 #22	MGP_PahariEiJ_G0012911 #22	Cpt1c (MGP_PahariEiJ_G0012910) #23	Tsks (MGP_PahariEiJ_G0012909) #24	Ap2a1 (MGP_PahariEiJ_G0012908) #25	Fuz (MGP_PahariEiJ_G0012907) #26	Med25 (MGP_PahariEiJ_G0012906) #27	Ptov1 (MGP_PahariEiJ_G0012905) #28	Pnkp (MGP_PahariEiJ_G0012904) #29	Akt1s1 (MGP_PahariEiJ_G0012903) #30	Tbc1d17 (MGP_PahariEiJ_G0012902) #31	Il4i1 (MGP_PahariEiJ_G0012901) #32	Atf5 (MGP_PahariEiJ_G0012900) #34	Vrk3 (MGP_PahariEiJ_G0012899) #35	MGP_PahariEiJ_G0012898 #36	Izumo2 (MGP_PahariEiJ_G0012897) #37	MGP_PahariEiJ_G0012896
Shrew mouse	MODERN SPECIES		Slc17a7 (MGP_PahariEiJ_G0012927) #7	Pih1d1 (MGP_PahariEiJ_G0012926) #8	Aldh16a1 (MGP_PahariEiJ_G0012925) #9	MGP_PahariEiJ_G0012924 #10	Rpl13a (MGP_PahariEiJ_G0012923) ##11	Rps11 (MGP_PahariEiJ_G0012922) #12	Fcgrt (MGP_PahariEiJ_G0012921) #13	Rcn3 (MGP_PahariEiJ_G0012920) #14	Nosip (MGP_PahariEiJ_G0012919) #15	Prrg2 (MGP_PahariEiJ_G0012918) #16	Prr12 (MGP_PahariEiJ_G0012917) #17	Rras (MGP_PahariEiJ_G0012916) #18	Scaf1 (MGP_PahariEiJ_G0012915) #19	Irf3 (MGP_PahariEiJ_G0012914) #20	Bcl2l12 (MGP_PahariEiJ_G0012913)	MGP_PahariEiJ_G0012912 #22	MGP_PahariEiJ_G0012911 #22	Cpt1c (MGP_PahariEiJ_G0012910) #23	Tsks (MGP_PahariEiJ_G0012909) #24	Ap2a1 (MGP_PahariEiJ_G0012908) #25	Fuz (MGP_PahariEiJ_G0012907) #26	Med25 (MGP_PahariEiJ_G0012906) #27	Ptov1 (MGP_PahariEiJ_G0012905) #28	Pnkp (MGP_PahariEiJ_G0012904) #29	Akt1s1 (MGP_PahariEiJ_G0012903) #30	Tbc1d17 (MGP_PahariEiJ_G0012902) #31	Il4i1 (MGP_PahariEiJ_G0012901) #32	Atf5 (MGP_PahariEiJ_G0012900) #34	Vrk3 (MGP_PahariEiJ_G0012899) #35	MGP_PahariEiJ_G0012898 #36	Izumo2 (MGP_PahariEiJ_G0012897) #37
Rat	DUPLICATION
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES	5	ENSRNOG00000070133	AABR07016566.1 (ENSRNOG00000051648)	Actr2 (ENSRNOG00000004959)	Spred2 (ENSRNOG00000004888)	Meis1 (ENSRNOG00000004606)	Etaa1l1 (ENSRNOG00000006185)	Hnrnpk-ps1 (ENSRNOG00000063529)	C1d (ENSRNOG00000005982)	Pno1 (ENSRNOG00000005524)	Cnrip1 (ENSRNOG00000005326)	Plek (ENSRNOG00000005214)	Fbxo48 (ENSRNOG00000023026)	Egfr (ENSRNOG00000004332)	Sec61g (ENSRNOG00000005203)	Vstm2a (ENSRNOG00000005180)	LOC100361025 (ENSRNOG00000004090) #22	Cobl (ENSRNOG00000004281)	Grb10 (ENSRNOG00000004290)	Ddc (ENSRNOG00000004327)	Fignl1 (ENSRNOG00000004440)	Ikzf1 (ENSRNOG00000004444)	Spata48 (ENSRNOG00000037621)	Zpbp (ENSRNOG00000027801)	Vwc2 (ENSRNOG00000049076)	LOC498414 (ENSRNOG00000030665)	LOC685655 (ENSRNOG00000069782)	ENSRNOG00000067374	Abca13 (ENSRNOG00000025645)	Upp1 (ENSRNOG00000004972)	LOC688553 (ENSRNOG00000037632)	Sun3 (ENSRNOG00000005105)
Rat	MODERN SPECIES	19	C9h6orf141 (ENSRNOG00000048967)	Cyp2ac1 (ENSRNOG00000048329)	Rhag (ENSRNOG00000050121)	Crisp2 (ENSRNOG00000013225)	ENSRNOG00000068915	LOC102553880 (ENSRNOG00000039663)	LOC108351994 (ENSRNOG00000063860)	ENSRNOG00000066672	Crisp3 (ENSRNOG00000013496)	Pgk2 (ENSRNOG00000013600)	ENSRNOG00000066520	Crisp1 (ENSRNOG00000013612)	Defb49 (ENSRNOG00000039651)	Defb18 (ENSRNOG00000039650)	Defb16 (ENSRNOG00000066154)	ENSRNOG00000069864 #22	ENSRNOG00000064433	Tfap2d (ENSRNOG00000011642)	Tfap2b (ENSRNOG00000011823)	Pkhd1 (ENSRNOG00000058742)	Il17a (ENSRNOG00000012467)	Il17f (ENSRNOG00000012509)	Mcm3 (ENSRNOG00000012543)	Paqr8 (ENSRNOG00000067120)	Efhc1 (ENSRNOG00000042729)	Tram2 (ENSRNOG00000013046)	RGD1562107 (ENSRNOG00000024755)	Tmem14a (ENSRNOG00000013238)	Gsta3 (ENSRNOG00000056847)	ENSRNOG00000064063	Gsta1 (ENSRNOG00000013484)
Rat	MODERN SPECIES		Gfy (ENSRNOG00000047401)	Slc17a7 (ENSRNOG00000020650) #7	Pih1d1 (ENSRNOG00000020634) #8	Aldh16a1 (ENSRNOG00000020623) #9	Rpl13a (ENSRNOG00000020618) ##11	Rps11 (ENSRNOG00000020595) #12	Fcgrt (ENSRNOG00000020583) #13	Rcn3 (ENSRNOG00000043007) #14	Nosip (ENSRNOG00000020543) #15	Prrg2 (ENSRNOG00000020517) #16	Prr12 (ENSRNOG00000059408) #17	Rras (ENSRNOG00000037247) #18	Scaf1 (ENSRNOG00000056946) #19	Irf3 (ENSRNOG00000043388) #20	Bcl2l12 (ENSRNOG00000020486)	Prmt1 (ENSRNOG00000026109) #22	Cpt1c (ENSRNOG00000026163) #23	Tsks (ENSRNOG00000020443) #24	Ap2a1 (ENSRNOG00000026243) #25	Fuz (ENSRNOG00000053084) #26	Med25 (ENSRNOG00000020363) #27	Ptov1 (ENSRNOG00000020358) #28	Pnkp (ENSRNOG00000020318) #29	Akt1s1 (ENSRNOG00000020289) #30	Tbc1d17 (ENSRNOG00000020191) #31	Atf5 (ENSRNOG00000020060) #34	Il4i1 (ENSRNOG00000020148) #32	Nup62 (ENSRNOG00000048733) #33	Vrk3 (ENSRNOG00000026517) #35	Zfp473 (ENSRNOG00000026572) #36	Izumo2 (ENSRNOG00000065701) #37
Rat	MODERN SPECIES	16	Efcab11 (ENSRNOG00000053317)	Foxn3 (ENSRNOG00000004709)	Cpg1 (ENSRNOG00000060278)	Ttc8 (ENSRNOG00000004542)	Eml5 (ENSRNOG00000004207)	Zc3h14 (ENSRNOG00000004083)	Ptpn21 (ENSRNOG00000060568)	Spata7 (ENSRNOG00000003955)	Kcnk10 (ENSRNOG00000003813)	Gpr65 (ENSRNOG00000065590)	Galc (ENSRNOG00000003759)	Flrt2 (ENSRNOG00000003732)	ENSRNOG00000066374	LOC103692684 (ENSRNOG00000070197)	AABR07065265.1 (ENSRNOG00000021751)	ENSRNOG00000066641 #22	ENSRNOG00000030420	AABR07065217.2 (ENSRNOG00000042542)	Sel1l (ENSRNOG00000004464)	Ston2 (ENSRNOG00000004458)	Gtf2a1 (ENSRNOG00000004300)	Tshr (ENSRNOG00000003972)	Cep128 (ENSRNOG00000003908)	Dio2 (ENSRNOG00000062383)	ENSRNOG00000063297	ENSRNOG00000062878	dsr-2 (ENSRNOG00000066815)	Nrxn3 (ENSRNOG00000047574)	Adck1 (ENSRNOG00000012685)	ENSRNOG00000062977	LOC100912568 (ENSRNOG00000069554)
Cricetidae	ANCESTRAL SPECIES	28	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Cricetinae	ANCESTRAL SPECIES	33	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36	ENSGT00390000015068 #37
Golden Hamster	MODERN SPECIES	792	Kash5 (ENSMAUG00000020117)	Pth2 (ENSMAUG00000017781)	Gfy (ENSMAUG00000018963)	Slc17a7 (ENSMAUG00000000717) #7	Pih1d1 (ENSMAUG00000017490) #8	Aldh16a1 (ENSMAUG00000008671) #9	Flt3l (ENSMAUG00000012216) #10	Fcgrt (ENSMAUG00000013272) #13	Rcn3 (ENSMAUG00000012208) #14	Prrg2 (ENSMAUG00000012143) #16	Prr12 (ENSMAUG00000001460) #17	Rras (ENSMAUG00000022179) #18	Scaf1 (ENSMAUG00000019574) #19	Irf3 (ENSMAUG00000022168) #20	Bcl2l12 (ENSMAUG00000014186)	Prmt1 (ENSMAUG00000005917) #22	ENSMAUG00000015570 #23	Tsks (ENSMAUG00000001231) #24	Ap2a1 (ENSMAUG00000005134) #25	ENSMAUG00000004157 #26	Med25 (ENSMAUG00000010098) #27	Ptov1 (ENSMAUG00000014396) #28	Pnkp (ENSMAUG00000018809) #29	Akt1s1 (ENSMAUG00000018933) #30	ENSMAUG00000012091 #31	Il4i1 (ENSMAUG00000014929) #32	Nup62 (ENSMAUG00000019906) #33	Atf5 (ENSMAUG00000019941) #34	Vrk3 (ENSMAUG00000015093) #35	Zfp473 (ENSMAUG00000017471) #36	Izumo2 (ENSMAUG00000001423) #37
Chinese hamster chok1gshd	MODERN SPECIES	271	Slc17a7 (ENSCGRG00001007021) #7	Pih1d1 (ENSCGRG00001013397) #8	Aldh16a1 (ENSCGRG00001016532) #9	Flt3l (ENSCGRG00001017445) #10	ENSCGRG00001018651 ##11	Rps11 (ENSCGRG00001023575) #12	Fcgrt (ENSCGRG00001000744) #13	Rcn3 (ENSCGRG00001003964) #14	Nosip (ENSCGRG00001013092) #15	Prrg2 (ENSCGRG00001014643) #16	Prr12 (ENSCGRG00001016597) #17	Rras (ENSCGRG00001019817) #18	Scaf1 (ENSCGRG00001021428) #19	Irf3 (ENSCGRG00001000404) #20	Bcl2l12 (ENSCGRG00001008963)	Prmt1 (ENSCGRG00001018188) #22	Cpt1c (ENSCGRG00001015931) #23	ENSCGRG00001019632	ENSCGRG00001022440 #24	Ap2a1 (ENSCGRG00001004014) #25	ENSCGRG00001002717	Fuz (ENSCGRG00001000345) #26	Med25 (ENSCGRG00001022723) #27	Ptov1 (ENSCGRG00001013179) #28	Pnkp (ENSCGRG00001019341) #29	Akt1s1 (ENSCGRG00001021290) #30	Tbc1d17 (ENSCGRG00001014714) #31	Il4i1 (ENSCGRG00001017543) #32	Nup62 (ENSCGRG00001016364) #33	Atf5 (ENSCGRG00001020961) #34	Vrk3 (ENSCGRG00001001410) #35
Cricetidae_B	ANCESTRAL SPECIES	31	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.v ##11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00960000192808	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00390000015068 #37
Northern American deer mouse	MODERN SPECIES		Slc17a7 (ENSPEMG00000018918) #7	Pih1d1 (ENSPEMG00000011439) #8	Aldh16a1 (ENSPEMG00000004925) #9	Flt3l (ENSPEMG00000012798) #10	Rpl13a (ENSPEMG00000009221) ##11	Rps11 (ENSPEMG00000015976) #12	Fcgrt (ENSPEMG00000010129) #13	Rcn3 (ENSPEMG00000015947) #14	Nosip (ENSPEMG00000011136) #15	Prrg2 (ENSPEMG00000001303) #16	Prr12 (ENSPEMG00000010751) #17	Rras (ENSPEMG00000017709) #18	Scaf1 (ENSPEMG00000013288) #19	Irf3 (ENSPEMG00000010948) #20	Bcl2l12 (ENSPEMG00000017405)	Prmt1 (ENSPEMG00000014287) #22	Cpt1c (ENSPEMG00000013161) #23	Tsks (ENSPEMG00000012885) #24	Ap2a1 (ENSPEMG00000013224) #25	Fuz (ENSPEMG00000006496) #26	ENSPEMG00000024339	Med25 (ENSPEMG00000009126) #27	Ptov1 (ENSPEMG00000030238) #28	Pnkp (ENSPEMG00000004786) #29	Akt1s1 (ENSPEMG00000010956) #30	Tbc1d17 (ENSPEMG00000010004) #31	Il4i1 (ENSPEMG00000006448) #32	Nup62 (ENSPEMG00000010597) #33	Atf5 (ENSPEMG00000029877) #34	Vrk3 (ENSPEMG00000013077) #35	Izumo2 (ENSPEMG00000008634) #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	97	Slc17a7 (ENSMOCG00000008964) #7	Pih1d1 (ENSMOCG00000017144) #8	Aldh16a1 (ENSMOCG00000005158) #9	Flt3l (ENSMOCG00000010342) #10	ENSMOCG00000002774 ##11	Rps11 (ENSMOCG00000014469) #12	Fcgrt (ENSMOCG00000017574) #13	Rcn3 (ENSMOCG00000000557) #14	ENSMOCG00000002542 #15	Prrg2 (ENSMOCG00000003675) #16	Prr12 (ENSMOCG00000018369) #17	Rras (ENSMOCG00000002251) #18	Scaf1 (ENSMOCG00000012474) #19	Irf3 (ENSMOCG00000013920) #20	Bcl2l12 (ENSMOCG00000022863)	ENSMOCG00000004064 #22	Cpt1c (ENSMOCG00000001831) #23	Tsks (ENSMOCG00000012880) #24	Ap2a1 (ENSMOCG00000007825) #25	Fuz (ENSMOCG00000003081) #26	Med25 (ENSMOCG00000006863) #27	Ptov1 (ENSMOCG00000003051) #28	Pnkp (ENSMOCG00000006264) #29	Akt1s1 (ENSMOCG00000014526) #30	ENSMOCG00000020458 #31	Il4i1 (ENSMOCG00000009373) #32	ENSMOCG00000000871	Atf5 (ENSMOCG00000001321) #34	ENSMOCG00000003289	Vrk3 (ENSMOCG00000004276) #35	Izumo2 (ENSMOCG00000014130) #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	101	Wdr86 (ENSMOCG00000000597)	Crygn (ENSMOCG00000015061)	Rheb (ENSMOCG00000022240)	Prkag2 (ENSMOCG00000001286)	Galntl5 (ENSMOCG00000013714)	Galnt11 (ENSMOCG00000005276)	ENSMOCG00000001053	ENSMOCG00000020782	ENSMOCG00000016671	Actr3b (ENSMOCG00000004828)	Dpp6 (ENSMOCG00000000556)	Paxip1 (ENSMOCG00000013649)	Htr5a (ENSMOCG00000019605)	Insig1 (ENSMOCG00000020032)	En2 (ENSMOCG00000015841)	ENSMOCG00000019441 #22	ENSMOCG00000010240	Rbm33 (ENSMOCG00000021895)	Shh (ENSMOCG00000008843)	ENSMOCG00000013020	ENSMOCG00000018001	Rnf32 (ENSMOCG00000014460)	Lmbr1 (ENSMOCG00000008297)	ENSMOCG00000010734	Nom1 (ENSMOCG00000015962)	Mnx1 (ENSMOCG00000020173)	ENSMOCG00000002622	Ube3c (ENSMOCG00000018821)	ENSMOCG00000018590	ENSMOCG00000018608	ENSMOCG00000002213
Prairie vole	MODERN SPECIES	1	Zdhhc21 (ENSMOCG00000015320)	Nfib (ENSMOCG00000021986)	ENSMOCG00000020921	ENSMOCG00000018271	Lurap1l (ENSMOCG00000015966)	Tyrp1 (ENSMOCG00000015263)	ENSMOCG00000004135	Ptprd (ENSMOCG00000001990)	ENSMOCG00000015211	ENSMOCG00000012575	ENSMOCG00000013894	Frmd3 (ENSMOCG00000008934)	2310002L09Rik (ENSMOCG00000022037)	Rasef (ENSMOCG00000000943)	Tle1 (ENSMOCG00000017405)	ENSMOCG00000019378 #22	Megf9 (ENSMOCG00000018603)	E130308A19Rik (ENSMOCG00000014658)	Inip (ENSMOCG00000001218)	Snx30 (ENSMOCG00000000536)	Slc46a2 (ENSMOCG00000013061)	ENSMOCG00000004604	Zfp37 (ENSMOCG00000019734)	Slc31a2 (ENSMOCG00000013063)	Fkbp15 (ENSMOCG00000015155)	Slc31a1 (ENSMOCG00000014099)	Cdc26 (ENSMOCG00000018577)	Prpf4 (ENSMOCG00000018273)	Wdr31 (ENSMOCG00000022914)	Bspry (ENSMOCG00000022879)	Hdhd3 (ENSMOCG00000022769)
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.e.a #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT01100000267133	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302.i #29	ENSGT00940000159302.j #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Naked mole-rat female	MODERN SPECIES	21	PTH2 (ENSHGLG00000009333)	SLC17A7 (ENSHGLG00000011238) #7	ALDH16A1 (ENSHGLG00000010891) #9	FLT3LG (ENSHGLG00000007895) #10	ENSHGLG00000010070 #11	RPS11 (ENSHGLG00000040635) #12	FCGRT (ENSHGLG00000040787) #13	RCN3 (ENSHGLG00000048489) #14	ENSHGLG00000046891 #15	ENSHGLG00000043624	ENSHGLG00000011479 #8	ENSHGLG00000043111 #18	ENSHGLG00000038097 #19	IRF3 (ENSHGLG00000009400) #20	BCL2L12 (ENSHGLG00000008378)	PRMT1 (ENSHGLG00000006326) #22	ENSHGLG00000041739	ENSHGLG00000032781	ENSHGLG00000047510 #23	TSKS (ENSHGLG00000005186) #24	ENSHGLG00000050426 #25	ENSHGLG00000040645	ENSHGLG00000038378 #26	ENSHGLG00000038144 #27	PTOV1 (ENSHGLG00000017957) #28	ENSHGLG00000013804 #29	ENSHGLG00000045780	ENSHGLG00000033639 #29	AKT1S1 (ENSHGLG00000040304) #30	ENSHGLG00000044259 #31	ENSHGLG00000036978 #31
Hystricomorpha_a	ANCESTRAL SPECIES	33	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.f #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302.i #29	ENSGT00940000159302.j #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Guinea pig	MODERN SPECIES	70	SLC17A7 (ENSCPOG00000006786) #7	PIH1D1 (ENSCPOG00000026119) #8	ALDH16A1 (ENSCPOG00000002850) #9	FLT3LG (ENSCPOG00000022577) #10	ENSCPOG00000012417 #11	RPS11 (ENSCPOG00000015145) #12	FCGRT (ENSCPOG00000025125) #13	RCN3 (ENSCPOG00000003639) #14	NOSIP (ENSCPOG00000011811) #15	PRRG2 (ENSCPOG00000008051) #16	PRR12 (ENSCPOG00000011808) #17	RRAS (ENSCPOG00000033433) #18	SCAF1 (ENSCPOG00000019794) #19	IRF3 (ENSCPOG00000026146) #20	BCL2L12 (ENSCPOG00000005156)	PRMT1 (ENSCPOG00000019328) #22	CPT1C (ENSCPOG00000015483) #23	TSKS (ENSCPOG00000005997) #24	AP2A1 (ENSCPOG00000005104) #25	FUZ (ENSCPOG00000005113) #26	MED25 (ENSCPOG00000005117) #27	PTOV1 (ENSCPOG00000035204) #28	PNKP (ENSCPOG00000005127) #29	AKT1S1 (ENSCPOG00000019888) #30	TBC1D17 (ENSCPOG00000005133) #31	NUP62 (ENSCPOG00000038392) #33	IL4I1 (ENSCPOG00000005143) #32	ATF5 (ENSCPOG00000038313) #34	VRK3 (ENSCPOG00000021853) #35	ZNF473 (ENSCPOG00000007696) #36	ENSCPOG00000011703 #37
Hystricomorpha_b	ANCESTRAL SPECIES	65	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.f #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302.i #29	ENSGT00940000159302.j #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Long-tailed chinchilla	MODERN SPECIES	266	SLC17A7 (ENSCLAG00000004681) #7	PIH1D1 (ENSCLAG00000004603) #8	ALDH16A1 (ENSCLAG00000004135) #9	FLT3LG (ENSCLAG00000003815) #10	ENSCLAG00000012323 #11	RPS11 (ENSCLAG00000011518) #12	FCGRT (ENSCLAG00000008478) #13	RCN3 (ENSCLAG00000008137) #14	NOSIP (ENSCLAG00000007784) #15	PRRG2 (ENSCLAG00000007479) #16	PRR12 (ENSCLAG00000007194) #17	RRAS (ENSCLAG00000004920) #18	ENSCLAG00000004727 #19	IRF3 (ENSCLAG00000004576) #20	BCL2L12 (ENSCLAG00000004288)	PRMT1 (ENSCLAG00000003806) #22	ENSCLAG00000006977 #23	TSKS (ENSCLAG00000006760) #24	AP2A1 (ENSCLAG00000010607) #25	FUZ (ENSCLAG00000016293) #26	MED25 (ENSCLAG00000009793) #27	PTOV1 (ENSCLAG00000007773) #28	ENSCLAG00000010053 #29	AKT1S1 (ENSCLAG00000009882) #30	TBC1D17 (ENSCLAG00000008838) #31	IL4I1 (ENSCLAG00000007325) #32	NUP62 (ENSCLAG00000007138) #33	ATF5 (ENSCLAG00000008535) #34	VRK3 (ENSCLAG00000008415) #35	ZNF473 (ENSCLAG00000008267) #36	MYH14 (ENSCLAG00000006607)
Degu	DUPLICATION
Degu	MODERN SPECIES	44	ENSODEG00000020536	ENSODEG00000018457	KATNAL2 (ENSODEG00000018481)	HDHD2 (ENSODEG00000018388)	IER3IP1 (ENSODEG00000018375)	SKOR2 (ENSODEG00000018363)	ENSODEG00000018367	ENSODEG00000018340	ENSODEG00000018377	SMAD2 (ENSODEG00000018373)	ZBTB7C (ENSODEG00000018417)	CTIF (ENSODEG00000018390)	SMAD7 (ENSODEG00000018424)	DYM (ENSODEG00000018486)	ENSODEG00000018393	ENSODEG00000018365 #22	ENSODEG00000018460 #22	ENSODEG00000020491	C18orf32 (ENSODEG00000018385)	ENSODEG00000018384	ENSODEG00000018441	ENSODEG00000018444	ENSODEG00000018445	LIPG (ENSODEG00000018437)	ENSODEG00000018376	MYO5B (ENSODEG00000018483)	ENSODEG00000018463	MBD1 (ENSODEG00000018451)	CXXC1 (ENSODEG00000018469)	ENSODEG00000018389	ENSODEG00000018396
Degu	MODERN SPECIES	309	SLC17A7 (ENSODEG00000017136) #7	PIH1D1 (ENSODEG00000017073) #8	ALDH16A1 (ENSODEG00000016912) #9	ENSODEG00000017084 #10	ENSODEG00000016831 #11	ENSODEG00000016970 #12	FCGRT (ENSODEG00000017231) #13	RCN3 (ENSODEG00000016858) #14	NOSIP (ENSODEG00000016859) #15	PRRG2 (ENSODEG00000016952) #16	PRR12 (ENSODEG00000016863) #17	RRAS (ENSODEG00000016763) #18	SCAF1 (ENSODEG00000017762) #19	IRF3 (ENSODEG00000017008) #20	BCL2L12 (ENSODEG00000016838)	ENSODEG00000016694 #22	CPT1C (ENSODEG00000017021) #23	TSKS (ENSODEG00000017089) #24	AP2A1 (ENSODEG00000016865) #25	FUZ (ENSODEG00000016367) #26	ENSODEG00000017065 #27	PTOV1 (ENSODEG00000016855) #28	PNKP (ENSODEG00000016593) #29	ENSODEG00000016659	TBC1D17 (ENSODEG00000016577) #31	IL4I1 (ENSODEG00000016671) #32	NUP62 (ENSODEG00000016565) #33	ATF5 (ENSODEG00000016787) #34	ENSODEG00000016554	ENSODEG00000016849	VRK3 (ENSODEG00000016490) #35
Degu	MODERN SPECIES	44	ENSODEG00000018457	KATNAL2 (ENSODEG00000018481)	HDHD2 (ENSODEG00000018388)	IER3IP1 (ENSODEG00000018375)	SKOR2 (ENSODEG00000018363)	ENSODEG00000018367	ENSODEG00000018340	ENSODEG00000018377	SMAD2 (ENSODEG00000018373)	ZBTB7C (ENSODEG00000018417)	CTIF (ENSODEG00000018390)	SMAD7 (ENSODEG00000018424)	DYM (ENSODEG00000018486)	ENSODEG00000018393	ENSODEG00000018365 #22	ENSODEG00000018460 #22	ENSODEG00000020491	C18orf32 (ENSODEG00000018385)	ENSODEG00000018384	ENSODEG00000018441	ENSODEG00000018444	ENSODEG00000018445	LIPG (ENSODEG00000018437)	ENSODEG00000018376	MYO5B (ENSODEG00000018483)	ENSODEG00000018463	MBD1 (ENSODEG00000018451)	CXXC1 (ENSODEG00000018469)	ENSODEG00000018389	ENSODEG00000018396	ENSODEG00000018450
Sciuridae	ANCESTRAL SPECIES	36	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Eurasian red squirrel	MODERN SPECIES	8	PIH1D1 (ENSSVLG00005019780) #8	ALDH16A1 (ENSSVLG00005019893) #9	FLT3LG (ENSSVLG00005020373) #10	ENSSVLG00005020410 #11	ENSSVLG00005020539 #12	FCGRT (ENSSVLG00005020604) #13	RCN3 (ENSSVLG00005020707) #14	NOSIP (ENSSVLG00005020742) #15	PRRG2 (ENSSVLG00005020778) #16	ENSSVLG00005020873 #17	ENSSVLG00005020892 #17	RRAS (ENSSVLG00005020957) #18	SCAF1 (ENSSVLG00005020993) #19	IRF3 (ENSSVLG00005021057) #20	ENSSVLG00005021344	PRMT1 (ENSSVLG00005021460) #22	CPT1C (ENSSVLG00005021628) #23	TSKS (ENSSVLG00005021672) #24	AP2A1 (ENSSVLG00005021771) #25	ENSSVLG00005021820 #26	MED25 (ENSSVLG00005021880) #27	PNKP (ENSSVLG00005022053) #29	AKT1S1 (ENSSVLG00005022107) #30	TBC1D17 (ENSSVLG00005022203) #31	IL4I1 (ENSSVLG00005022427) #32	ATF5 (ENSSVLG00005022475) #34	ENSSVLG00005022533	VRK3 (ENSSVLG00005022803) #35	ZNF473 (ENSSVLG00005022988) #36	IZUMO2 (ENSSVLG00005023039) #37	MYH14 (ENSSVLG00005023153)
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.d #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a.c #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Alpin marmot	MODERN SPECIES	45	PIH1D1 (ENSMMMG00000009345) #8	ALDH16A1 (ENSMMMG00000009292) #9	FLT3LG (ENSMMMG00000009274) #10	ENSMMMG00000009223 #11	RPS11 (ENSMMMG00000009205) #12	FCGRT (ENSMMMG00000009200) #13	RCN3 (ENSMMMG00000009187) #14	NOSIP (ENSMMMG00000009170) #15	PRRG2 (ENSMMMG00000009090) #16	PRR12 (ENSMMMG00000008958) #17	RRAS (ENSMMMG00000008947) #18	ENSMMMG00000008939 #19	ENSMMMG00000008929 #19	IRF3 (ENSMMMG00000008918) #20	BCL2L12 (ENSMMMG00000008873)	PRMT1 (ENSMMMG00000008667) #22	CPT1C (ENSMMMG00000008619) #23	TSKS (ENSMMMG00000008591) #24	AP2A1 (ENSMMMG00000008509) #25	FUZ (ENSMMMG00000008435) #26	ENSMMMG00000008300 #27	PTOV1 (ENSMMMG00000008291) #28	AKT1S1 (ENSMMMG00000008260) #30	TBC1D17 (ENSMMMG00000008210) #31	IL4I1 (ENSMMMG00000008201) #32	NUP62 (ENSMMMG00000008198) #33	ATF5 (ENSMMMG00000008183) #34	VRK3 (ENSMMMG00000008145) #35	ZNF473 (ENSMMMG00000008136) #36	IZUMO2 (ENSMMMG00000008119) #37	MYH14 (ENSMMMG00000007529)
Marmotini_b	ANCESTRAL SPECIES	22	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.a.d #11	ENSGT00390000002732.n.`b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a.c #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000114226	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Squirrel	MODERN SPECIES	264	SLC17A7 (ENSSTOG00000014610) #7	PIH1D1 (ENSSTOG00000025836) #8	ALDH16A1 (ENSSTOG00000014893) #9	FLT3LG (ENSSTOG00000033194) #10	ENSSTOG00000021558 #11	RPS11 (ENSSTOG00000023443) #12	FCGRT (ENSSTOG00000014628) #13	RCN3 (ENSSTOG00000014632) #14	NOSIP (ENSSTOG00000014638) #15	PRRG2 (ENSSTOG00000014274) #16	PRR12 (ENSSTOG00000025104) #17	RRAS (ENSSTOG00000001860) #18	SCAF1 (ENSSTOG00000019495) #19	IRF3 (ENSSTOG00000022900) #20	BCL2L12 (ENSSTOG00000005394)	PRMT1 (ENSSTOG00000025543) #22	CPT1C (ENSSTOG00000015267) #23	TSKS (ENSSTOG00000009763) #24	AP2A1 (ENSSTOG00000012743) #25	FUZ (ENSSTOG00000031126) #26	MED25 (ENSSTOG00000012769) #27	PTOV1 (ENSSTOG00000012781) #28	PNKP (ENSSTOG00000019487) #29	AKT1S1 (ENSSTOG00000012784) #30	TBC1D17 (ENSSTOG00000012787) #31	IL4I1 (ENSSTOG00000019779) #32	NUP62 (ENSSTOG00000022115) #33	ATF5 (ENSSTOG00000025471) #34
Arctic ground squirrel	MODERN SPECIES	332	SLC17A7 (ENSUPAG00010013549) #7	PIH1D1 (ENSUPAG00010013578) #8	ALDH16A1 (ENSUPAG00010013606) #9	FLT3LG (ENSUPAG00010013649) #10	ENSUPAG00010013671 #11	RPS11 (ENSUPAG00010013718) #12	FCGRT (ENSUPAG00010013737) #13	RCN3 (ENSUPAG00010013756) #14	NOSIP (ENSUPAG00010013771) #15	ENSUPAG00010013794 #16	PRR12 (ENSUPAG00010013819) #17	RRAS (ENSUPAG00010013833) #18	SCAF1 (ENSUPAG00010013843) #19	IRF3 (ENSUPAG00010013866) #20	BCL2L12 (ENSUPAG00010013879)	PRMT1 (ENSUPAG00010013901) #22	ENSUPAG00010013972	CPT1C (ENSUPAG00010013990) #23	TSKS (ENSUPAG00010014030) #24	AP2A1 (ENSUPAG00010014052) #25	FUZ (ENSUPAG00010014135) #26	MED25 (ENSUPAG00010014262) #27	PTOV1 (ENSUPAG00010014392) #28	PNKP (ENSUPAG00010014426) #29	AKT1S1 (ENSUPAG00010014460) #30	TBC1D17 (ENSUPAG00010014480) #31	IL4I1 (ENSUPAG00010014508) #32	NUP62 (ENSUPAG00010014523) #33	ATF5 (ENSUPAG00010014527) #34	VRK3 (ENSUPAG00010014540) #35	ZNF473 (ENSUPAG00010014576) #36
Primates	ANCESTRAL SPECIES	15	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Strepsirrhini	ANCESTRAL SPECIES	16	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Bushbaby	MODERN SPECIES	326	PTH2 (ENSOGAG00000025508)	SLC17A7 (ENSOGAG00000000525) #7	PIH1D1 (ENSOGAG00000004612) #8	ALDH16A1 (ENSOGAG00000004615) #9	ENSOGAG00000004625 ##11	ENSOGAG00000004627 #12	FCGRT (ENSOGAG00000033149) #13	RCN3 (ENSOGAG00000015973) #14	NOSIP (ENSOGAG00000031136) #15	PRRG2 (ENSOGAG00000029157) #16	PRR12 (ENSOGAG00000028634) #17	RRAS (ENSOGAG00000010243) #18	SCAF1 (ENSOGAG00000034071) #19	IRF3 (ENSOGAG00000011935) #20	BCL2L12 (ENSOGAG00000024949)	PRMT1 (ENSOGAG00000011938) #22	CPT1C (ENSOGAG00000012448) #23	TSKS (ENSOGAG00000009741) #24	AP2A1 (ENSOGAG00000016501) #25	FUZ (ENSOGAG00000024265) #26	MED25 (ENSOGAG00000005310) #27	PTOV1 (ENSOGAG00000027242) #28	PNKP (ENSOGAG00000005313) #29	AKT1S1 (ENSOGAG00000005316) #30	TBC1D17 (ENSOGAG00000005319) #31	IL4I1 (ENSOGAG00000005324) #32	NUP62 (ENSOGAG00000031905) #33	ATF5 (ENSOGAG00000024883) #34	ENSOGAG00000013807	VRK3 (ENSOGAG00000008746) #35	ZNF473 (ENSOGAG00000025068) #36
Lemuriformes	ANCESTRAL SPECIES	15	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT01050000246259	ENSGT00530000063801.b #34	ENSGT00940000158111 #35
Mouse lemur	MODERN SPECIES	14	SLC17A7 (ENSMICG00000030896) #7	PIH1D1 (ENSMICG00000009307) #8	ALDH16A1 (ENSMICG00000027350) #9	FLT3LG (ENSMICG00000030023) #10	ENSMICG00000009318 ##11	ENSMICG00000028139 #12	FCGRT (ENSMICG00000008987) #13	RCN3 (ENSMICG00000045822) #14	NOSIP (ENSMICG00000009006) #15	PRRG2 (ENSMICG00000009845) #16	PRR12 (ENSMICG00000032448) #17	RRAS (ENSMICG00000001757) #18	SCAF1 (ENSMICG00000032113) #19	IRF3 (ENSMICG00000001752) #20	BCL2L12 (ENSMICG00000001755)	PRMT1 (ENSMICG00000030079) #22	ENSMICG00000044006	CPT1C (ENSMICG00000013992) #23	TSKS (ENSMICG00000013406) #24	AP2A1 (ENSMICG00000003081) #25	FUZ (ENSMICG00000003089) #26	MED25 (ENSMICG00000003098) #27	PTOV1 (ENSMICG00000003113) #28	PNKP (ENSMICG00000003120) #29	AKT1S1 (ENSMICG00000044841) #30	TBC1D17 (ENSMICG00000003129) #31	IL4I1 (ENSMICG00000028489) #32	ENSMICG00000043052 #34	VRK3 (ENSMICG00000006537) #35	ZNF473 (ENSMICG00000038653) #36	IZUMO2 (ENSMICG00000046551) #37
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.b.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT01050000246259	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.f
Greater bamboo lemur	MODERN SPECIES	1049	SLC17A7 (ENSPSMG00000022041) #7	PIH1D1 (ENSPSMG00000022069) #8	ALDH16A1 (ENSPSMG00000022163) #9	FLT3LG (ENSPSMG00000022197) #10	ENSPSMG00000022217 ##11	RPS11 (ENSPSMG00000022235) #12	FCGRT (ENSPSMG00000022254) #13	RCN3 (ENSPSMG00000022260) #14	NOSIP (ENSPSMG00000022266) #15	PRRG2 (ENSPSMG00000022274) #16	PRR12 (ENSPSMG00000022287) #17	RRAS (ENSPSMG00000022293) #18	ENSPSMG00000022320 #19	IRF3 (ENSPSMG00000022357) #20	BCL2L12 (ENSPSMG00000022396)	PRMT1 (ENSPSMG00000022503) #22	ENSPSMG00000022558	CPT1C (ENSPSMG00000022578) #23	TSKS (ENSPSMG00000022602) #24	AP2A1 (ENSPSMG00000022943) #25	FUZ (ENSPSMG00000023196) #26	ENSPSMG00000023201	MED25 (ENSPSMG00000023308) #27	PTOV1 (ENSPSMG00000023406) #28	PNKP (ENSPSMG00000023544) #29	AKT1S1 (ENSPSMG00000023604) #30	TBC1D17 (ENSPSMG00000000621) #31	IL4I1 (ENSPSMG00000000756) #32	NUP62 (ENSPSMG00000000766) #33	ENSPSMG00000000773
Coquerels sifaka	MODERN SPECIES	280	SLC17A7 (ENSPCOG00000026961) #7	PIH1D1 (ENSPCOG00000021089) #8	ALDH16A1 (ENSPCOG00000024480) #9	FLT3LG (ENSPCOG00000020522) #10	ENSPCOG00000023898 ##11	RPS11 (ENSPCOG00000028258) #12	FCGRT (ENSPCOG00000022052) #13	RCN3 (ENSPCOG00000015352) #14	NOSIP (ENSPCOG00000022792) #15	PRRG2 (ENSPCOG00000020752) #16	PRR12 (ENSPCOG00000027631) #17	RRAS (ENSPCOG00000018040) #18	SCAF1 (ENSPCOG00000008862) #19	ENSPCOG00000013825 #20	BCL2L12 (ENSPCOG00000026501)	PRMT1 (ENSPCOG00000013819) #22	ADM5 (ENSPCOG00000028667)	CPT1C (ENSPCOG00000017917) #23	TSKS (ENSPCOG00000004463) #24	AP2A1 (ENSPCOG00000025187) #25	FUZ (ENSPCOG00000026495) #26	MED25 (ENSPCOG00000014677) #27	PTOV1 (ENSPCOG00000016580) #28	PNKP (ENSPCOG00000020441) #29	AKT1S1 (ENSPCOG00000010492) #30	TBC1D17 (ENSPCOG00000016238) #31	IL4I1 (ENSPCOG00000013930) #32	ATF5 (ENSPCOG00000020223) #34	ENSPCOG00000005881	VRK3 (ENSPCOG00000014327) #35	ZNF473 (ENSPCOG00000016747) #36
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Tarsier	MODERN SPECIES	1818												RRAS (ENSTSYG00000011908) #18	ENSTSYG00000034509 #19	IRF3 (ENSTSYG00000001716) #20	BCL2L12 (ENSTSYG00000031723)	PRMT1 (ENSTSYG00000034577) #22
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.n.a.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439.h #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Mas night monkey	MODERN SPECIES	1285	SLC17A7 (ENSANAG00000036576) #7	PIH1D1 (ENSANAG00000029718) #8	ALDH16A1 (ENSANAG00000027131) #9	FLT3LG (ENSANAG00000029260) #10	ENSANAG00000030530 ##11	ENSANAG00000022898 #12	FCGRT (ENSANAG00000028290) #13	RCN3 (ENSANAG00000037039) #14	NOSIP (ENSANAG00000021786) #15	PRRG2 (ENSANAG00000035663) #16	PRR12 (ENSANAG00000034977) #17	RRAS (ENSANAG00000031347) #18	SCAF1 (ENSANAG00000016485) #19	IRF3 (ENSANAG00000032698) #20	BCL2L12 (ENSANAG00000029602)	PRMT1 (ENSANAG00000021704) #22	ADM5 (ENSANAG00000021656)	CPT1C (ENSANAG00000024263) #23	TSKS (ENSANAG00000020537) #24	AP2A1 (ENSANAG00000024248) #25	FUZ (ENSANAG00000037210) #26	MED25 (ENSANAG00000026898) #27	PTOV1 (ENSANAG00000035798) #28	PNKP (ENSANAG00000037187) #29	AKT1S1 (ENSANAG00000037896) #30	TBC1D17 (ENSANAG00000025223) #31	IL4I1 (ENSANAG00000037455) #32	ENSANAG00000032102	SIGLEC11 (ENSANAG00000035103)	VRK3 (ENSANAG00000036854) #35	ZNF473 (ENSANAG00000034634) #36
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.n.a.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439.g #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Cebidae_a	ANCESTRAL SPECIES	20	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.n.a.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439.h #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Bolivian squirrel monkey	MODERN SPECIES	169	SLC17A7 (ENSSBOG00000030154) #7	PIH1D1 (ENSSBOG00000019965) #8	ALDH16A1 (ENSSBOG00000024687) #9	FLT3LG (ENSSBOG00000021267) #10	RPL13A (ENSSBOG00000028481) ##11	RPS11 (ENSSBOG00000030203) #12	FCGRT (ENSSBOG00000030231) #13	RCN3 (ENSSBOG00000033369) #14	NOSIP (ENSSBOG00000034587) #15	PRRG2 (ENSSBOG00000024513) #16	PRR12 (ENSSBOG00000025929) #17	RRAS (ENSSBOG00000021255) #18	ENSSBOG00000027147 #19	IRF3 (ENSSBOG00000033765) #20	BCL2L12 (ENSSBOG00000024390)	PRMT1 (ENSSBOG00000021030) #22	ADM5 (ENSSBOG00000035636)	CPT1C (ENSSBOG00000022411) #23	TSKS (ENSSBOG00000034066) #24	AP2A1 (ENSSBOG00000022105) #25	FUZ (ENSSBOG00000025448) #26	MED25 (ENSSBOG00000029239) #27	PTOV1 (ENSSBOG00000035809) #28	PNKP (ENSSBOG00000026000) #29	AKT1S1 (ENSSBOG00000032870) #30	TBC1D17 (ENSSBOG00000029810) #31	IL4I1 (ENSSBOG00000022086) #32	ATF5 (ENSSBOG00000022597) #34	SIGLEC11 (ENSSBOG00000028282)	VRK3 (ENSSBOG00000018031) #35	ZNF473 (ENSSBOG00000029181) #36
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	478	FAM193B (ENSCCAG00000028032)	DDX41 (ENSCCAG00000036188)	DOK3 (ENSCCAG00000033574)	PDLIM7 (ENSCCAG00000036603)	DBN1 (ENSCCAG00000034373)	ENSCCAG00000037094	PRR7 (ENSCCAG00000035156)	GRK6 (ENSCCAG00000031420)	F12 (ENSCCAG00000022637)	SLC34A1 (ENSCCAG00000030954)	RGS14 (ENSCCAG00000031951)	LMAN2 (ENSCCAG00000032831)	MXD3 (ENSCCAG00000026342)	PRELID1 (ENSCCAG00000017920)	RAB24 (ENSCCAG00000032754)	ENSCCAG00000036708 #22	ENSCCAG00000028199	NSD1 (ENSCCAG00000031074)	FGFR4 (ENSCCAG00000026258)	ZNF346 (ENSCCAG00000025324)	ENSCCAG00000023454	UIMC1 (ENSCCAG00000030824)	HK3 (ENSCCAG00000027550)	UNC5A (ENSCCAG00000036150)	ENSCCAG00000024114	TSPAN17 (ENSCCAG00000028954)	EIF4E1B (ENSCCAG00000008488)	SNCB (ENSCCAG00000021013)	CDHR2 (ENSCCAG00000033098)	RNF44 (ENSCCAG00000024456)	FAF2 (ENSCCAG00000035052)
Capuchin	MODERN SPECIES	911									ENSCCAG00000021162 #15	PRRG2 (ENSCCAG00000024711) #16	PRR12 (ENSCCAG00000021246) #17	RRAS (ENSCCAG00000026694) #18	SCAF1 (ENSCCAG00000037557) #19	IRF3 (ENSCCAG00000026490) #20	BCL2L12 (ENSCCAG00000034163)	ENSCCAG00000036122 #22	ADM5 (ENSCCAG00000008120)
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	18	ENSCJAG00000076001	ENSCJAG00000043892	ENSCJAG00000086335	ENSCJAG00000078641	ENSCJAG00000087217	ENSCJAG00000063236	ENSCJAG00000080331	TMED3 (ENSCJAG00000005277)	ANKRD34C (ENSCJAG00000005284)	RASGRF1 (ENSCJAG00000002316)	ENSCJAG00000085127	ENSCJAG00000002305	MORF4L1 (ENSCJAG00000002214)	ADAMTS7 (ENSCJAG00000002181)	ENSCJAG00000052178	ENSCJAG00000057743 #22	AKAP13 (ENSCJAG00000009388)	KLHL25 (ENSCJAG00000021976)	ENSCJAG00000059501	ENSCJAG00000065812	ENSCJAG00000064391	ENSCJAG00000085215	ENSCJAG00000076223	ENSCJAG00000056672	ENSCJAG00000076695	ENSCJAG00000052170	ENSCJAG00000004631	IMP4 (ENSCJAG00000004623)	PTPN18 (ENSCJAG00000004585)	ENSCJAG00000011112	ARHGEF4 (ENSCJAG00000011046)
Marmoset	MODERN SPECIES	14	SLC17A7 (ENSCJAG00000000089) #7	PIH1D1 (ENSCJAG00000000084) #8	ALDH16A1 (ENSCJAG00000086591) #9	FLT3LG (ENSCJAG00000000081) #10	ENSCJAG00000000072 ##11	RPS11 (ENSCJAG00000000069) #12	FCGRT (ENSCJAG00000000066) #13	RCN3 (ENSCJAG00000000060) #14	NOSIP (ENSCJAG00000017616) #15	PRRG2 (ENSCJAG00000017641) #16	PRR12 (ENSCJAG00000017654) #17	RRAS (ENSCJAG00000003614) #18	SCAF1 (ENSCJAG00000003625) #19	IRF3 (ENSCJAG00000003637) #20	BCL2L12 (ENSCJAG00000003663)	ENSCJAG00000003670 #22	CPT1C (ENSCJAG00000003757) #23	TSKS (ENSCJAG00000003802) #24	AP2A1 (ENSCJAG00000003806) #25	FUZ (ENSCJAG00000003892) #26	MED25 (ENSCJAG00000003943) #27	PTOV1 (ENSCJAG00000004105) #28	PNKP (ENSCJAG00000004134) #29	AKT1S1 (ENSCJAG00000004153) #30	TBC1D17 (ENSCJAG00000043715) #31	IL4I1 (ENSCJAG00000004185) #32	ENSCJAG00000044088 #33	ATF5 (ENSCJAG00000078958) #34	SIGLEC11 (ENSCJAG00000004218)	VRK3 (ENSCJAG00000004228) #35	ENSCJAG00000072591
Marmoset	MODERN SPECIES	11	DNAH5 (ENSCJAG00000009326)	ENSCJAG00000072293	TRIO (ENSCJAG00000010904)	OTULINL (ENSCJAG00000010893)	OTULIN (ENSCJAG00000010884)	ANKH (ENSCJAG00000010839)	FBXL7 (ENSCJAG00000010823)	MARCHF11 (ENSCJAG00000047285)	RETREG1 (ENSCJAG00000042515)	MYO10 (ENSCJAG00000011831)	ENSCJAG00000053651	BASP1 (ENSCJAG00000046235)	ENSCJAG00000082447	ENSCJAG00000085722	ENSCJAG00000081133	ENSCJAG00000031497 #22	CDH18 (ENSCJAG00000011808)	ENSCJAG00000080182	ENSCJAG00000076231	ENSCJAG00000047554	ENSCJAG00000083660	ENSCJAG00000072646	ENSCJAG00000011760	ENSCJAG00000081189	CDH10 (ENSCJAG00000011702)	ENSCJAG00000073758	ENSCJAG00000083886	ENSCJAG00000083112	CDH9 (ENSCJAG00000007662)	ENSCJAG00000081489	CDH6 (ENSCJAG00000018954)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.g	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Hominidae	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.g	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	10	SLC17A7 (ENSPPYG00000010247) #7	PIH1D1 (ENSPPYG00000010248) #8	ALDH16A1 (ENSPPYG00000010249) #9	FLT3LG (ENSPPYG00000032479) #10	RPL13A (ENSPPYG00000010251) ##11	RPS11 (ENSPPYG00000025860) #12	FCGRT (ENSPPYG00000010253) #13	RCN3 (ENSPPYG00000010254) #14	ENSPPYG00000010255 #15	PRRG2 (ENSPPYG00000010256) #16	ENSPPYG00000010257 #17	ENSPPYG00000010258 #18	SCAF1 (ENSPPYG00000010259) #19	ENSPPYG00000010260 #20	BCL2L12 (ENSPPYG00000029416)	PRMT1 (ENSPPYG00000010261) #22	ADM5 (ENSPPYG00000038301)	CPT1C (ENSPPYG00000010527) #23	ENSPPYG00000041203	TSKS (ENSPPYG00000010538) #24	AP2A1 (ENSPPYG00000010262) #25	FUZ (ENSPPYG00000010263) #26	MED25 (ENSPPYG00000010264) #27	PTOV1 (ENSPPYG00000010265) #28	PNKP (ENSPPYG00000010266) #29	ENSPPYG00000030395	AKT1S1 (ENSPPYG00000010267) #30	TBC1D17 (ENSPPYG00000010268) #31	IL4I1 (ENSPPYG00000010269) #32	NUP62 (ENSPPYG00000010270) #33	ATF5 (ENSPPYG00000015495) #34
Orangutan	MODERN SPECIES	18	DDX41 (ENSPPYG00000016097)	DOK3 (ENSPPYG00000016096)	PDLIM7 (ENSPPYG00000016095)	DBN1 (ENSPPYG00000016094)	PRR7 (ENSPPYG00000016093)	GRK6 (ENSPPYG00000016092)	F12 (ENSPPYG00000016091)	PFN3 (ENSPPYG00000016090)	SLC34A1 (ENSPPYG00000016089)	RGS14 (ENSPPYG00000016088)	LMAN2 (ENSPPYG00000016087)	MXD3 (ENSPPYG00000032238)	PRELID1 (ENSPPYG00000016086)	RAB24 (ENSPPYG00000016085)	NSD1 (ENSPPYG00000016084)	ENSPPYG00000040539 #22	FGFR4 (ENSPPYG00000016083)	ZNF346 (ENSPPYG00000016082)	UIMC1 (ENSPPYG00000016081)	HK3 (ENSPPYG00000016080)	UNC5A (ENSPPYG00000016079)	TSPAN17 (ENSPPYG00000016078)	EIF4E1B (ENSPPYG00000016077)	SNCB (ENSPPYG00000016076)	GPRIN1 (ENSPPYG00000016075)	CDHR2 (ENSPPYG00000016152)	RNF44 (ENSPPYG00000035967)	FAF2 (ENSPPYG00000016073)	CLTB (ENSPPYG00000016072)	HIGD2A (ENSPPYG00000038024)	NOP16 (ENSPPYG00000016070)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.g	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.b	ENSGT00940000158111 #35
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	10	SLC17A7 (ENSGGOG00000016632) #7	PIH1D1 (ENSGGOG00000016642) #8	ALDH16A1 (ENSGGOG00000010135) #9	FLT3LG (ENSGGOG00000010144) #10	RPL13A (ENSGGOG00000002932) ##11	RPS11 (ENSGGOG00000002936) #12	FCGRT (ENSGGOG00000008774) #13	RCN3 (ENSGGOG00000008781) #14	NOSIP (ENSGGOG00000007004) #15	PRRG2 (ENSGGOG00000001713) #16	ENSGGOG00000001717 #17	RRAS (ENSGGOG00000038961) #18	SCAF1 (ENSGGOG00000000495) #19	ENSGGOG00000000499 #20	ENSGGOG00000000501	PRMT1 (ENSGGOG00000000503) #22	ADM5 (ENSGGOG00000022737)	CPT1C (ENSGGOG00000012237) #23	ENSGGOG00000025810	TSKS (ENSGGOG00000010134) #24	AP2A1 (ENSGGOG00000010141) #25	FUZ (ENSGGOG00000010155) #26	MED25 (ENSGGOG00000010163) #27	PNKP (ENSGGOG00000010193) #29	AKT1S1 (ENSGGOG00000010205) #30	TBC1D17 (ENSGGOG00000010211) #31	IL4I1 (ENSGGOG00000010229) #32	ENSGGOG00000039266 #34	ENSGGOG00000036915 #34	ENSGGOG00000004959	ENSGGOG00000023573
Gorilla	MODERN SPECIES	18	DDX41 (ENSGGOG00000014484)	DOK3 (ENSGGOG00000014475)	PDLIM7 (ENSGGOG00000014435)	DBN1 (ENSGGOG00000009680)	PRR7 (ENSGGOG00000009676)	GRK6 (ENSGGOG00000009669)	F12 (ENSGGOG00000009659)	PFN3 (ENSGGOG00000009641)	SLC34A1 (ENSGGOG00000009639)	RGS14 (ENSGGOG00000009632)	ENSGGOG00000003780	ENSGGOG00000022827	ENSGGOG00000011764	PRELID1 (ENSGGOG00000011762)	RAB24 (ENSGGOG00000023694)	ENSGGOG00000027930 #22	NSD1 (ENSGGOG00000011744)	FGFR4 (ENSGGOG00000002917)	ZNF346 (ENSGGOG00000015260)	UIMC1 (ENSGGOG00000017069)	HK3 (ENSGGOG00000002108)	UNC5A (ENSGGOG00000002104)	TSPAN17 (ENSGGOG00000015858)	EIF4E1B (ENSGGOG00000015854)	SNCB (ENSGGOG00000015845)	GPRIN1 (ENSGGOG00000024915)	CDHR2 (ENSGGOG00000016038)	RNF44 (ENSGGOG00000005510)	FAF2 (ENSGGOG00000005506)	CLTB (ENSGGOG00000014346)	HIGD2A (ENSGGOG00000014339)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.g	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.a	ENSGT01080000257333.A.a.a.i.b
Human	MODERN SPECIES	10	SLC17A7 (ENSG00000104888) #7	PIH1D1 (ENSG00000104872) #8	ALDH16A1 (ENSG00000161618) #9	FLT3LG (ENSG00000090554) #10	RPL13A (ENSG00000142541) ##11	RPS11 (ENSG00000142534) #12	FCGRT (ENSG00000104870) #13	RCN3 (ENSG00000142552) #14	NOSIP (ENSG00000142546) #15	PRRG2 (ENSG00000126460) #16	PRR12 (ENSG00000126464) #17	RRAS (ENSG00000126458) #18	SCAF1 (ENSG00000126461) #19	IRF3 (ENSG00000126456) #20	BCL2L12 (ENSG00000126453)	PRMT1 (ENSG00000126457) #22	ADM5 (ENSG00000224420)	CPT1C (ENSG00000169169) #23	TSKS (ENSG00000126467) #24	AP2A1 (ENSG00000196961) #25	FUZ (ENSG00000010361) #26	MED25 (ENSG00000104973) #27	PTOV1 (ENSG00000104960) #28	PNKP (ENSG00000039650) #29	AKT1S1 (ENSG00000204673) #30	TBC1D17 (ENSG00000104946) #31	IL4I1 (ENSG00000104951) #32	NUP62 (ENSG00000213024) #33	ATF5 (ENSG00000169136) #34	SIGLEC11 (ENSG00000161640)	SIGLEC16 (ENSG00000161643)
Pan	ANCESTRAL SPECIES	9	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.a.a.a.b ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.g	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.a	ENSGT01080000257333.A.a.a.i.b
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	10	SLC17A7 (ENSPPAG00000042379) #7	PIH1D1 (ENSPPAG00000035526) #8	ALDH16A1 (ENSPPAG00000037820) #9	ENSPPAG00000020354 #10	RPL13A (ENSPPAG00000037365) ##11	RPS11 (ENSPPAG00000038695) #12	FCGRT (ENSPPAG00000043605) #13	RCN3 (ENSPPAG00000037004) #14	NOSIP (ENSPPAG00000033342) #15	PRRG2 (ENSPPAG00000009244) #16	PRR12 (ENSPPAG00000001106) #17	RRAS (ENSPPAG00000033675) #18	SCAF1 (ENSPPAG00000040154) #19	ENSPPAG00000035759 #20	ENSPPAG00000008160	PRMT1 (ENSPPAG00000034989) #22	ADM5 (ENSPPAG00000038454)	CPT1C (ENSPPAG00000036321) #23	ENSPPAG00000043211	TSKS (ENSPPAG00000003064) #24	AP2A1 (ENSPPAG00000025102) #25	FUZ (ENSPPAG00000041934) #26	MED25 (ENSPPAG00000028184) #27	PTOV1 (ENSPPAG00000029476) #28	PNKP (ENSPPAG00000012210) #29	AKT1S1 (ENSPPAG00000043790) #30	TBC1D17 (ENSPPAG00000043750) #31	IL4I1 (ENSPPAG00000039884) #32	ENSPPAG00000017521 #33	ATF5 (ENSPPAG00000031606) #34	ENSPPAG00000037647
Bonobo	MODERN SPECIES	18	DDX41 (ENSPPAG00000029499)	DOK3 (ENSPPAG00000030094)	PDLIM7 (ENSPPAG00000008701)	DBN1 (ENSPPAG00000036910)	PRR7 (ENSPPAG00000039804)	ENSPPAG00000037235	GRK6 (ENSPPAG00000041029)	F12 (ENSPPAG00000015911)	PFN3 (ENSPPAG00000018574)	SLC34A1 (ENSPPAG00000030998)	RGS14 (ENSPPAG00000032723)	LMAN2 (ENSPPAG00000042088)	ENSPPAG00000035873	PRELID1 (ENSPPAG00000038319)	RAB24 (ENSPPAG00000039689)	ENSPPAG00000043919 #22	NSD1 (ENSPPAG00000012185)	FGFR4 (ENSPPAG00000037055)	ZNF346 (ENSPPAG00000031435)	UIMC1 (ENSPPAG00000035887)	HK3 (ENSPPAG00000037374)	UNC5A (ENSPPAG00000036000)	TSPAN17 (ENSPPAG00000037966)	EIF4E1B (ENSPPAG00000036530)	SNCB (ENSPPAG00000035570)	ENSPPAG00000033744	CDHR2 (ENSPPAG00000037192)	ENSPPAG00000029974	FAF2 (ENSPPAG00000041151)	ENSPPAG00000027623	HIGD2A (ENSPPAG00000037407)
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	10	SLC17A7 (ENSPTRG00000011294) #7	PIH1D1 (ENSPTRG00000011295) #8	ALDH16A1 (ENSPTRG00000011296) #9	FLT3LG (ENSPTRG00000011297) #10	RPL13A (ENSPTRG00000011298) ##11	RPS11 (ENSPTRG00000011299) #12	FCGRT (ENSPTRG00000023168) #13	RCN3 (ENSPTRG00000011303) #14	NOSIP (ENSPTRG00000011304) #15	PRRG2 (ENSPTRG00000011305) #16	PRR12 (ENSPTRG00000011306) #17	RRAS (ENSPTRG00000011307) #18	SCAF1 (ENSPTRG00000011308) #19	IRF3 (ENSPTRG00000011309) #20	BCL2L12 (ENSPTRG00000011310)	PRMT1 (ENSPTRG00000040282) #22	CPT1C (ENSPTRG00000011313) #23	ENSPTRG00000045479	TSKS (ENSPTRG00000011314) #24	AP2A1 (ENSPTRG00000011315) #25	FUZ (ENSPTRG00000011318) #26	MED25 (ENSPTRG00000011319) #27	PTOV1 (ENSPTRG00000011321) #28	PNKP (ENSPTRG00000011323) #29	AKT1S1 (ENSPTRG00000011326) #30	TBC1D17 (ENSPTRG00000011325) #31	IL4I1 (ENSPTRG00000034260) #32	ATF5 (ENSPTRG00000011327) #34	SIGLEC11 (ENSPTRG00000011328)	ENSPTRG00000011329	VRK3 (ENSPTRG00000011330) #35
Chimpanzee	MODERN SPECIES	18	DDX41 (ENSPTRG00000017589)	DOK3 (ENSPTRG00000052283)	PDLIM7 (ENSPTRG00000017587)	DBN1 (ENSPTRG00000017586)	ENSPTRG00000051755	PRR7 (ENSPTRG00000017585)	GRK6 (ENSPTRG00000045987)	F12 (ENSPTRG00000017583)	PFN3 (ENSPTRG00000045005)	SLC34A1 (ENSPTRG00000017582)	RGS14 (ENSPTRG00000017581)	LMAN2 (ENSPTRG00000017580)	MXD3 (ENSPTRG00000051004)	PRELID1 (ENSPTRG00000046505)	RAB24 (ENSPTRG00000017577)	ENSPTRG00000048377 #22	NSD1 (ENSPTRG00000017575)	FGFR4 (ENSPTRG00000017574)	ZNF346 (ENSPTRG00000017573)	UIMC1 (ENSPTRG00000017572)	HK3 (ENSPTRG00000017571)	UNC5A (ENSPTRG00000017569)	TSPAN17 (ENSPTRG00000017568)	EIF4E1B (ENSPTRG00000028481)	SNCB (ENSPTRG00000017567)	CDHR2 (ENSPTRG00000017565)	RNF44 (ENSPTRG00000017564)	FAF2 (ENSPTRG00000017563)	CLTB (ENSPTRG00000051534)	HIGD2A (ENSPTRG00000017561)	NOP16 (ENSPTRG00000017560)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES		SLC17A7 (ENSNLEG00000005132) #7	ENSNLEG00000033852 #8	ENSNLEG00000005172 #9	ENSNLEG00000005205 #10	ENSNLEG00000005211 ##11	RPS11 (ENSNLEG00000031159) #12	ENSNLEG00000028731	RCN3 (ENSNLEG00000005216) #14	NOSIP (ENSNLEG00000005234) #15	ENSNLEG00000031889 #16	PRR12 (ENSNLEG00000005252) #17	RRAS (ENSNLEG00000005258) #18	SCAF1 (ENSNLEG00000027756) #19	ENSNLEG00000005277 #20	ENSNLEG00000005290	ENSNLEG00000005306 #22	ADM5 (ENSNLEG00000031967)	ENSNLEG00000005319 #23	ENSNLEG00000005330 #24	AP2A1 (ENSNLEG00000005331) #25	FUZ (ENSNLEG00000005341) #26	ENSNLEG00000005344 #27	PTOV1 (ENSNLEG00000005374) #28	ENSNLEG00000005397 #29	AKT1S1 (ENSNLEG00000005402) #30	TBC1D17 (ENSNLEG00000005426) #31	ENSNLEG00000005468 #32	ENSNLEG00000033607 #33	ATF5 (ENSNLEG00000005470) #34	SIGLEC11 (ENSNLEG00000005475)	VRK3 (ENSNLEG00000005493) #35
Gibbon	MODERN SPECIES	11	DDX41 (ENSNLEG00000012844)	DOK3 (ENSNLEG00000029933)	ENSNLEG00000032504	DBN1 (ENSNLEG00000012829)	ENSNLEG00000035510	ENSNLEG00000012823	F12 (ENSNLEG00000012798)	PFN3 (ENSNLEG00000028262)	SLC34A1 (ENSNLEG00000012780)	RGS14 (ENSNLEG00000012773)	LMAN2 (ENSNLEG00000026590)	MXD3 (ENSNLEG00000033619)	PRELID1 (ENSNLEG00000012714)	RAB24 (ENSNLEG00000012697)	NSD1 (ENSNLEG00000012658)	ENSNLEG00000012692 #22	FGFR4 (ENSNLEG00000012632)	ZNF346 (ENSNLEG00000012612)	UIMC1 (ENSNLEG00000012585)	HK3 (ENSNLEG00000012572)	UNC5A (ENSNLEG00000012553)	TSPAN17 (ENSNLEG00000012538)	EIF4E1B (ENSNLEG00000012532)	SNCB (ENSNLEG00000012529)	GPRIN1 (ENSNLEG00000012526)	ENSNLEG00000012521	RNF44 (ENSNLEG00000012516)	FAF2 (ENSNLEG00000012504)	CLTB (ENSNLEG00000012503)	HIGD2A (ENSNLEG00000012501)	ENSNLEG00000012490
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i	ENSGT00940000158111 #35
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n.t #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT01080000257333.A.a.a.i.f
Vervet Monkey	MODERN SPECIES	25	GFY (ENSCSAG00000002584)	SLC17A7 (ENSCSAG00000002583) #7	PIH1D1 (ENSCSAG00000002579) #8	ALDH16A1 (ENSCSAG00000002553) #9	FLT3LG (ENSCSAG00000002539) #10	ENSCSAG00000002537 ##11	RPS11 (ENSCSAG00000002534) #12	FCGRT (ENSCSAG00000002513) #13	RCN3 (ENSCSAG00000002501) #14	NOSIP (ENSCSAG00000002499) #15	PRRG2 (ENSCSAG00000002498) #16	PRR12 (ENSCSAG00000002495) #17	RRAS (ENSCSAG00000002482) #18	SCAF1 (ENSCSAG00000002481) #19	IRF3 (ENSCSAG00000002477) #20	PRMT1 (ENSCSAG00000002474) #22	ADM5 (ENSCSAG00000002466)	CPT1C (ENSCSAG00000002461) #23	TSKS (ENSCSAG00000002454) #24	ENSCSAG00000002449 ##25	AP2A1 (ENSCSAG00000002446) #25	FUZ (ENSCSAG00000002433) #26	MED25 (ENSCSAG00000002431) #27	PTOV1 (ENSCSAG00000002427) #28	PNKP (ENSCSAG00000002422) #29	AKT1S1 (ENSCSAG00000002420) #30	TBC1D17 (ENSCSAG00000002417) #31	IL4I1 (ENSCSAG00000002414) #32	NUP62 (ENSCSAG00000019646) #33	ATF5 (ENSCSAG00000002412) #34	ENSCSAG00000002408
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n.t #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT01080000257333.A.a.a.i.f.a
Macaca	ANCESTRAL SPECIES	12	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n.t #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT01080000257333.A.a.a.i.f.a
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	248	SLC17A7 (ENSMNEG00000036752) #7	PIH1D1 (ENSMNEG00000035306) #8	ALDH16A1 (ENSMNEG00000039451) #9	FLT3LG (ENSMNEG00000029282) #10	ENSMNEG00000034977 ##11	RPS11 (ENSMNEG00000043643) #12	FCGRT (ENSMNEG00000036913) #13	RCN3 (ENSMNEG00000031036) #14	NOSIP (ENSMNEG00000030270) #15	PRRG2 (ENSMNEG00000026492) #16	PRR12 (ENSMNEG00000032408) #17	RRAS (ENSMNEG00000032590) #18	SCAF1 (ENSMNEG00000041264) #19	IRF3 (ENSMNEG00000037326) #20	ENSMNEG00000038769	PRMT1 (ENSMNEG00000007881) #22	ADM5 (ENSMNEG00000038068)	CPT1C (ENSMNEG00000042605) #23	TSKS (ENSMNEG00000034415) #24	AP2A1 (ENSMNEG00000038226) #25	FUZ (ENSMNEG00000038987) #26	MED25 (ENSMNEG00000037433) #27	PTOV1 (ENSMNEG00000037909) #28	PNKP (ENSMNEG00000034948) #29	AKT1S1 (ENSMNEG00000045467) #30	TBC1D17 (ENSMNEG00000041164) #31	NUP62 (ENSMNEG00000041582) #33	IL4I1 (ENSMNEG00000031179) #32	ATF5 (ENSMNEG00000042538) #34	SIGLEC11 (ENSMNEG00000026645)	VRK3 (ENSMNEG00000040069) #35
Pig-tailed macaque	MODERN SPECIES	591	PDLIM7 (ENSMNEG00000044158)	DBN1 (ENSMNEG00000029985)	PRR7 (ENSMNEG00000038350)	ENSMNEG00000006625	GRK6 (ENSMNEG00000040778)	F12 (ENSMNEG00000042192)	PFN3 (ENSMNEG00000021788)	SLC34A1 (ENSMNEG00000027032)	RGS14 (ENSMNEG00000040032)	LMAN2 (ENSMNEG00000038079)	ENSMNEG00000037932	MXD3 (ENSMNEG00000032596)	ENSMNEG00000031388	RAB24 (ENSMNEG00000008581)	NSD1 (ENSMNEG00000034939)	ENSMNEG00000035920 #22	FGFR4 (ENSMNEG00000033182)	ZNF346 (ENSMNEG00000030466)	UIMC1 (ENSMNEG00000035258)	HK3 (ENSMNEG00000030815)	UNC5A (ENSMNEG00000010438)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00410000026259	ENSGT00730000111841	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT01080000257333.A.a.a.i.f.a
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	10	PPP1R15A (ENSMFAG00000041869)	TULP2 (ENSMFAG00000000586)	NUCB1 (ENSMFAG00000003135)	ENSMFAG00000029389	SLC6A16 (ENSMFAG00000017537)	ENSMFAG00000032972	TEAD2 (ENSMFAG00000035667)	DKKL1 (ENSMFAG00000033720)	KASH5 (ENSMFAG00000008806)	NOSIP (ENSMFAG00000031153) #15	PRRG2 (ENSMFAG00000034285) #16	RRAS (ENSMFAG00000029942) #18	ENSMFAG00000048188 #19	IRF3 (ENSMFAG00000033004) #20	BCL2L12 (ENSMFAG00000042931)	PRMT1 (ENSMFAG00000043429) #22	ADM5 (ENSMFAG00000029240)	CPT1C (ENSMFAG00000039271) #23	TSKS (ENSMFAG00000046167) #24	AP2A1 (ENSMFAG00000042161) #25	FUZ (ENSMFAG00000003351) #26	MED25 (ENSMFAG00000034435) #27	PTOV1 (ENSMFAG00000003953) #28	PNKP (ENSMFAG00000039622) #29	TBC1D17 (ENSMFAG00000038826) #31	IL4I1 (ENSMFAG00000001696) #32	ENSMFAG00000059650	ENSMFAG00000060114	NUP62 (ENSMFAG00000060788) #33	ATF5 (ENSMFAG00000047390) #34	ENSMFAG00000047263
Crab-eating macaque	MODERN SPECIES	16	B4GALT7 (ENSMFAG00000040618)	TMED9 (ENSMFAG00000062432)	ENSMFAG00000052305	PDLIM7 (ENSMFAG00000039384)	DBN1 (ENSMFAG00000036940)	PRR7 (ENSMFAG00000004546)	F12 (ENSMFAG00000032594)	GRK6 (ENSMFAG00000037374)	SLC34A1 (ENSMFAG00000031573)	RGS14 (ENSMFAG00000038737)	ENSMFAG00000049396	LMAN2 (ENSMFAG00000044466)	MXD3 (ENSMFAG00000033170)	PRELID1 (ENSMFAG00000003703)	RAB24 (ENSMFAG00000045651)	ENSMFAG00000044489 #22	NSD1 (ENSMFAG00000032625)	ENSMFAG00000065820	ZNF346 (ENSMFAG00000003577)	UIMC1 (ENSMFAG00000038747)	HK3 (ENSMFAG00000000149)	UNC5A (ENSMFAG00000043584)	TSPAN17 (ENSMFAG00000040265)	EIF4E1B (ENSMFAG00000031726)	SNCB (ENSMFAG00000033893)	GPRIN1 (ENSMFAG00000052966)	CDHR2 (ENSMFAG00000044762)	RNF44 (ENSMFAG00000003408)	FAF2 (ENSMFAG00000046297)	CLTB (ENSMFAG00000001544)	HIGD2A (ENSMFAG00000034686)
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	10	SLC17A7 (ENSMMUG00000014800) #7	PIH1D1 (ENSMMUG00000022116) #8	ALDH16A1 (ENSMMUG00000022117) #9	FLT3LG (ENSMMUG00000051892) #10	RPL13A (ENSMMUG00000007551) ##11	RPS11 (ENSMMUG00000007549) #12	ENSMMUG00000012273 #13	ENSMMUG00000009787 #14	NOSIP (ENSMMUG00000003819) #15	PRRG2 (ENSMMUG00000049747) #16	PRR12 (ENSMMUG00000012937) #17	RRAS (ENSMMUG00000028733) #18	SCAF1 (ENSMMUG00000012938) #19	IRF3 (ENSMMUG00000022735) #20	BCL2L12 (ENSMMUG00000003926)	PRMT1 (ENSMMUG00000003029) #22	ADM5 (ENSMMUG00000038407)	CPT1C (ENSMMUG00000014735) #23	TSKS (ENSMMUG00000019328) #24	AP2A1 (ENSMMUG00000011612) #25	FUZ (ENSMMUG00000011614) #26	MED25 (ENSMMUG00000020175) #27	PTOV1 (ENSMMUG00000011618) #28	PNKP (ENSMMUG00000011622) #29	AKT1S1 (ENSMMUG00000050123) #30	TBC1D17 (ENSMMUG00000011626) #31	IL4I1 (ENSMMUG00000011627) #32	NUP62 (ENSMMUG00000044817) #33	ATF5 (ENSMMUG00000054473) #34	ENSMMUG00000054052	ENSMMUG00000006385
Rhesus	MODERN SPECIES	16	FAM193B (ENSMMUG00000016910)	DDX41 (ENSMMUG00000016911)	DOK3 (ENSMMUG00000016914)	PDLIM7 (ENSMMUG00000003146)	DBN1 (ENSMMUG00000022891)	PRR7 (ENSMMUG00000064063)	GRK6 (ENSMMUG00000019817)	F12 (ENSMMUG00000019816)	PFN3 (ENSMMUG00000048792)	SLC34A1 (ENSMMUG00000019814)	RGS14 (ENSMMUG00000019807)	LMAN2 (ENSMMUG00000016192)	MXD3 (ENSMMUG00000009047)	PRELID1 (ENSMMUG00000009046)	RAB24 (ENSMMUG00000009045)	ENSMMUG00000045543 #22	NSD1 (ENSMMUG00000009041)	ZNF346 (ENSMMUG00000011033)	UIMC1 (ENSMMUG00000022838)	HK3 (ENSMMUG00000002653)	UNC5A (ENSMMUG00000002649)	TSPAN17 (ENSMMUG00000000144)	SNCB (ENSMMUG00000000137)	GPRIN1 (ENSMMUG00000013284)	CDHR2 (ENSMMUG00000013283)	RNF44 (ENSMMUG00000013282)	FAF2 (ENSMMUG00000009059)	HIGD2A (ENSMMUG00000064051)	CLTB (ENSMMUG00000009058)	NOP16 (ENSMMUG00000009317)	ARL10 (ENSMMUG00000019715)
Cercopithecinae_b	ANCESTRAL SPECIES	23	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n.t #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.j	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT01080000257333.A.a.a.i.f.a
Cercopithecinae_d	ANCESTRAL SPECIES	9	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a.b.o.a ##11	ENSGT00390000002732.n.t #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B.i.a	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.e	ENSGT00940000158111 #35
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	228	SLC17A7 (ENSCATG00000031736) #7	PIH1D1 (ENSCATG00000033857) #8	ALDH16A1 (ENSCATG00000013461) #9	FLT3LG (ENSCATG00000044584) #10	ENSCATG00000011576 ##11	RPS11 (ENSCATG00000017632) #12	FCGRT (ENSCATG00000033126) #13	RCN3 (ENSCATG00000043770) #14	NOSIP (ENSCATG00000035285) #15	PRRG2 (ENSCATG00000030138) #16	PRR12 (ENSCATG00000042487) #17	RRAS (ENSCATG00000007379) #18	SCAF1 (ENSCATG00000033591) #19	IRF3 (ENSCATG00000040122) #20	ENSCATG00000032204	PRMT1 (ENSCATG00000041012) #22	ADM5 (ENSCATG00000035159)	CPT1C (ENSCATG00000039916) #23	TSKS (ENSCATG00000042464) #24	AP2A1 (ENSCATG00000032213) #25	FUZ (ENSCATG00000025834) #26	MED25 (ENSCATG00000038287) #27	PTOV1 (ENSCATG00000039521) #28	PNKP (ENSCATG00000005270) #29	AKT1S1 (ENSCATG00000035872) #30	TBC1D17 (ENSCATG00000028104) #31	IL4I1 (ENSCATG00000044547) #32	NUP62 (ENSCATG00000043873) #33	ATF5 (ENSCATG00000035954) #34	ENSCATG00000029997	VRK3 (ENSCATG00000029992) #35
Sooty mangabey	MODERN SPECIES	597	DOK3 (ENSCATG00000037776)	PDLIM7 (ENSCATG00000024115)	DBN1 (ENSCATG00000045329)	ENSCATG00000045069	PRR7 (ENSCATG00000040623)	GRK6 (ENSCATG00000038151)	F12 (ENSCATG00000038105)	PFN3 (ENSCATG00000013439)	SLC34A1 (ENSCATG00000031182)	RGS14 (ENSCATG00000043483)	ENSCATG00000035180	LMAN2 (ENSCATG00000038623)	ENSCATG00000029483	ENSCATG00000037450	RAB24 (ENSCATG00000037953)	ENSCATG00000029485 #22	NSD1 (ENSCATG00000040716)	FGFR4 (ENSCATG00000037961)	ZNF346 (ENSCATG00000032030)	UIMC1 (ENSCATG00000040662)	HK3 (ENSCATG00000038402)	UNC5A (ENSCATG00000037088)	TSPAN17 (ENSCATG00000039640)	EIF4E1B (ENSCATG00000036544)	SNCB (ENSCATG00000043800)	CDHR2 (ENSCATG00000014184)	RNF44 (ENSCATG00000032061)	FAF2 (ENSCATG00000010027)	CLTB (ENSCATG00000035676)	HIGD2A (ENSCATG00000025158)	ENSCATG00000035739
Drill	DUPLICATION
Drill	MODERN SPECIES	1474							FCGRT (ENSMLEG00000033629) #13	RCN3 (ENSMLEG00000040337) #14	NOSIP (ENSMLEG00000030997) #15	PRRG2 (ENSMLEG00000037265) #16	PRR12 (ENSMLEG00000038331) #17	RRAS (ENSMLEG00000025479) #18	ENSMLEG00000039318 #19	IRF3 (ENSMLEG00000039544) #20	BCL2L12 (ENSMLEG00000032456)	PRMT1 (ENSMLEG00000042235) #22	ADM5 (ENSMLEG00000030240)	CPT1C (ENSMLEG00000036401) #23	TSKS (ENSMLEG00000001267) #24	AP2A1 (ENSMLEG00000000293) #25	FUZ (ENSMLEG00000035864) #26	MED25 (ENSMLEG00000034559) #27	PTOV1 (ENSMLEG00000044329) #28	PNKP (ENSMLEG00000031000) #29	AKT1S1 (ENSMLEG00000042173) #30	TBC1D17 (ENSMLEG00000018341) #31	IL4I1 (ENSMLEG00000030060) #32	NUP62 (ENSMLEG00000029810) #33	ATF5 (ENSMLEG00000043879) #34	SIGLEC11 (ENSMLEG00000036078)	VRK3 (ENSMLEG00000037694) #35
Drill	MODERN SPECIES	1026	DOK3 (ENSMLEG00000042954)	PDLIM7 (ENSMLEG00000032748)	DBN1 (ENSMLEG00000031701)	ENSMLEG00000009504	GRK6 (ENSMLEG00000031968)	F12 (ENSMLEG00000033059)	PFN3 (ENSMLEG00000024951)	SLC34A1 (ENSMLEG00000038092)	RGS14 (ENSMLEG00000039146)	LMAN2 (ENSMLEG00000030995)	ENSMLEG00000039033	ENSMLEG00000033838	ENSMLEG00000033984	RAB24 (ENSMLEG00000033634)	NSD1 (ENSMLEG00000038162)	ENSMLEG00000039729 #22	FGFR4 (ENSMLEG00000027975)	ZNF346 (ENSMLEG00000041138)	UIMC1 (ENSMLEG00000042432)	HK3 (ENSMLEG00000032002)	UNC5A (ENSMLEG00000036853)	TSPAN17 (ENSMLEG00000036441)	EIF4E1B (ENSMLEG00000037281)	SNCB (ENSMLEG00000029935)	GPRIN1 (ENSMLEG00000016237)	CDHR2 (ENSMLEG00000027084)	RNF44 (ENSMLEG00000038802)	FAF2 (ENSMLEG00000005577)	CLTB (ENSMLEG00000042205)	HIGD2A (ENSMLEG00000035593)	ENSMLEG00000039634
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	12	SLC17A7 (ENSPANG00000020841) #7	PIH1D1 (ENSPANG00000017749) #8	ALDH16A1 (ENSPANG00000017969) #9	FLT3LG (ENSPANG00000008127) #10	ENSPANG00000012050 ##11	ENSPANG00000012512 #12	FCGRT (ENSPANG00000012030) #13	RCN3 (ENSPANG00000002525) #14	NOSIP (ENSPANG00000010475) #15	PRRG2 (ENSPANG00000017531) #16	PRR12 (ENSPANG00000012511) #17	RRAS (ENSPANG00000015923) #18	SCAF1 (ENSPANG00000008801) #19	IRF3 (ENSPANG00000014697) #20	ENSPANG00000017968	PRMT1 (ENSPANG00000021846) #22	ADM5 (ENSPANG00000013470)	CPT1C (ENSPANG00000019475) #23	TSKS (ENSPANG00000012509) #24	AP2A1 (ENSPANG00000012049) #25	FUZ (ENSPANG00000012029) #26	MED25 (ENSPANG00000015922) #27	PTOV1 (ENSPANG00000008535) #28	PNKP (ENSPANG00000014926) #29	AKT1S1 (ENSPANG00000012799) #30	TBC1D17 (ENSPANG00000006388) #31	IL4I1 (ENSPANG00000007273) #32	NUP62 (ENSPANG00000004839) #33	ATF5 (ENSPANG00000024418) #34	ENSPANG00000008418	ENSPANG00000012798
Olive baboon	MODERN SPECIES	15	FAM193B (ENSPANG00000013568)	DDX41 (ENSPANG00000012013)	DOK3 (ENSPANG00000005512)	PDLIM7 (ENSPANG00000009298)	DBN1 (ENSPANG00000002421)	PRR7 (ENSPANG00000013254)	GRK6 (ENSPANG00000020835)	F12 (ENSPANG00000008365)	PFN3 (ENSPANG00000042137)	SLC34A1 (ENSPANG00000014008)	RGS14 (ENSPANG00000011467)	LMAN2 (ENSPANG00000013182)	MXD3 (ENSPANG00000007888)	PRELID1 (ENSPANG00000001623)	RAB24 (ENSPANG00000011857)	ENSPANG00000013856 #22	NSD1 (ENSPANG00000016763)	FGFR4 (ENSPANG00000012360)	ZNF346 (ENSPANG00000023732)	UIMC1 (ENSPANG00000010403)	HK3 (ENSPANG00000002753)	UNC5A (ENSPANG00000011858)	TSPAN17 (ENSPANG00000014775)	SNCB (ENSPANG00000014009)	GPRIN1 (ENSPANG00000009510)	CDHR2 (ENSPANG00000046548)	RNF44 (ENSPANG00000009299)	FAF2 (ENSPANG00000012854)	CLTB (ENSPANG00000047891)	HIGD2A (ENSPANG00000041635)	NOP16 (ENSPANG00000013926)
Rhinopithecus	ANCESTRAL SPECIES	32	ENSGT00940000156333	ENSGT00940000161724	ENSGT00940000159626	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544	ENSGT00940000161657	ENSGT00940000153664.A.b.b	ENSGT00950000183177.a.a.a.a	ENSGT00940000161364	ENSGT00910000147002	ENSGT00940000158355	ENSGT00940000161050	ENSGT00950000182810.B.a.x.a.a	ENSGT00910000144316	ENSGT00940000154700 #22	ENSGT00730000112484	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737 #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.a.i.g	ENSGT01080000257333.A.a.a.i.h
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	775	GDPD5 (ENSRBIG00000037527)	KLHL35 (ENSRBIG00000036873)	RPS3 (ENSRBIG00000044916)	ARRB1 (ENSRBIG00000041523)	SLCO2B1 (ENSRBIG00000035476)	ENSRBIG00000037921	OR2AT4 (ENSRBIG00000036161)	ENSRBIG00000043933	NEU3 (ENSRBIG00000040960)	ENSRBIG00000011964	XRRA1 (ENSRBIG00000036115)	RNF169 (ENSRBIG00000035895)	CHRDL2 (ENSRBIG00000028182)	ENSRBIG00000044531	ENSRBIG00000011853	ENSRBIG00000001091 #22	LIPT2 (ENSRBIG00000031912)	PGM2L1 (ENSRBIG00000043298)	ENSRBIG00000002437	P4HA3 (ENSRBIG00000034204)	PPME1 (ENSRBIG00000032741)	C2CD3 (ENSRBIG00000036054)	UCP3 (ENSRBIG00000032946)	UCP2 (ENSRBIG00000028444)	DNAJB13 (ENSRBIG00000032641)	PAAF1 (ENSRBIG00000041686)	ENSRBIG00000025698	MUC17 (ENSRBIG00000029632)
Black snub-nosed monkey	MODERN SPECIES	697	SLC17A7 (ENSRBIG00000007433) #7	PIH1D1 (ENSRBIG00000035363) #8	ALDH16A1 (ENSRBIG00000040057) #9	FLT3LG (ENSRBIG00000037282) #10	RPL13A (ENSRBIG00000044737) ##11	ENSRBIG00000041174 #12	FCGRT (ENSRBIG00000017955) #13	RCN3 (ENSRBIG00000022285) #14	ENSRBIG00000000401 #15	PRRG2 (ENSRBIG00000002898) #16	PRR12 (ENSRBIG00000029709) #17	RRAS (ENSRBIG00000044344) #18	ENSRBIG00000040700 #19	IRF3 (ENSRBIG00000030363) #20	ENSRBIG00000035712	PRMT1 (ENSRBIG00000037391) #22	ADM5 (ENSRBIG00000034258)	CPT1C (ENSRBIG00000034255) #23	TSKS (ENSRBIG00000043641) #24	AP2A1 (ENSRBIG00000032858) #25	FUZ (ENSRBIG00000038573) #26	MED25 (ENSRBIG00000029607) #27	ENSRBIG00000040867 #28	PNKP (ENSRBIG00000020340) #29	AKT1S1 (ENSRBIG00000029566) #30	TBC1D17 (ENSRBIG00000033207) #31	NUP62 (ENSRBIG00000042837) #33	IL4I1 (ENSRBIG00000034055) #32	ENSRBIG00000015084	ENSRBIG00000041518	VRK3 (ENSRBIG00000028015) #35
Black snub-nosed monkey	MODERN SPECIES	1265	DOK3 (ENSRBIG00000025895)	PDLIM7 (ENSRBIG00000042113)	DBN1 (ENSRBIG00000011350)	PRR7 (ENSRBIG00000037351)	GRK6 (ENSRBIG00000028971)	F12 (ENSRBIG00000028576)	PFN3 (ENSRBIG00000012393)	SLC34A1 (ENSRBIG00000035848)	RGS14 (ENSRBIG00000030533)	LMAN2 (ENSRBIG00000033748)	ENSRBIG00000031338	ENSRBIG00000037715	PRELID1 (ENSRBIG00000033622)	RAB24 (ENSRBIG00000036872)	NSD1 (ENSRBIG00000032789)	ENSRBIG00000044399 #22	FGFR4 (ENSRBIG00000036359)	ZNF346 (ENSRBIG00000036149)	UIMC1 (ENSRBIG00000040207)	HK3 (ENSRBIG00000036655)	UNC5A (ENSRBIG00000040983)	TSPAN17 (ENSRBIG00000029629)	EIF4E1B (ENSRBIG00000039242)	SNCB (ENSRBIG00000040936)	CDHR2 (ENSRBIG00000043564)	RNF44 (ENSRBIG00000040552)	FAF2 (ENSRBIG00000003159)	CLTB (ENSRBIG00000020625)	HIGD2A (ENSRBIG00000040150)	ENSRBIG00000038060	ARL10 (ENSRBIG00000030159)
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1304	GDPD5 (ENSRROG00000032119)	KLHL35 (ENSRROG00000042922)	RPS3 (ENSRROG00000009870)	ARRB1 (ENSRROG00000037258)	SLCO2B1 (ENSRROG00000029185)	ENSRROG00000038845	OR2AT4 (ENSRROG00000042697)	ENSRROG00000007318	NEU3 (ENSRROG00000029086)	ENSRROG00000009662	XRRA1 (ENSRROG00000038284)	RNF169 (ENSRROG00000034271)	CHRDL2 (ENSRROG00000029406)	ENSRROG00000041045	ENSRROG00000031930	ENSRROG00000040083 #22	ENSRROG00000018216	LIPT2 (ENSRROG00000044982)	KCNE3 (ENSRROG00000008117)	PGM2L1 (ENSRROG00000035061)	ENSRROG00000025736	P4HA3 (ENSRROG00000030733)	PPME1 (ENSRROG00000031513)	C2CD3 (ENSRROG00000036372)	UCP3 (ENSRROG00000035931)	UCP2 (ENSRROG00000026780)	DNAJB13 (ENSRROG00000026626)	PAAF1 (ENSRROG00000044104)	MRPL48 (ENSRROG00000043160)	RAB6A (ENSRROG00000042103)	PLEKHB1 (ENSRROG00000029271)
Golden snub-nosed monkey	MODERN SPECIES	1464	SLC17A7 (ENSRROG00000043166) #7	PIH1D1 (ENSRROG00000042187) #8	ALDH16A1 (ENSRROG00000044736) #9	FLT3LG (ENSRROG00000041379) #10	ENSRROG00000042976 ##11	RPS11 (ENSRROG00000045541) #12	FCGRT (ENSRROG00000010492) #13	RCN3 (ENSRROG00000041003) #14	NOSIP (ENSRROG00000030583) #15	PRRG2 (ENSRROG00000034623) #16	PRR12 (ENSRROG00000034505) #17	RRAS (ENSRROG00000019886) #18	SCAF1 (ENSRROG00000038280) #19	IRF3 (ENSRROG00000033700) #20	ENSRROG00000042358	PRMT1 (ENSRROG00000039426) #22	ADM5 (ENSRROG00000042548)	CPT1C (ENSRROG00000029606) #23	TSKS (ENSRROG00000036981) #24	AP2A1 (ENSRROG00000039730) #25	FUZ (ENSRROG00000037776) #26	MED25 (ENSRROG00000029134) #27	ENSRROG00000044939 #28	PNKP (ENSRROG00000043361) #29	AKT1S1 (ENSRROG00000039479) #30	TBC1D17 (ENSRROG00000041781) #31	IL4I1 (ENSRROG00000038621) #32	NUP62 (ENSRROG00000030340) #33	ENSRROG00000040093 #34	ENSRROG00000043506	ENSRROG00000045623
Golden snub-nosed monkey	MODERN SPECIES	2578	DDX41 (ENSRROG00000035750)	DOK3 (ENSRROG00000033646)	PDLIM7 (ENSRROG00000000790)	DBN1 (ENSRROG00000033190)	PRR7 (ENSRROG00000039628)	GRK6 (ENSRROG00000045754)	F12 (ENSRROG00000018768)	PFN3 (ENSRROG00000023781)	SLC34A1 (ENSRROG00000030317)	RGS14 (ENSRROG00000039090)	ENSRROG00000035517	LMAN2 (ENSRROG00000038934)	MXD3 (ENSRROG00000027476)	PRELID1 (ENSRROG00000038848)	RAB24 (ENSRROG00000038828)	ENSRROG00000035420 #22	NSD1 (ENSRROG00000033718)	FGFR4 (ENSRROG00000042700)	ZNF346 (ENSRROG00000037944)	UIMC1 (ENSRROG00000031295)	HK3 (ENSRROG00000036956)	UNC5A (ENSRROG00000029106)	TSPAN17 (ENSRROG00000039469)	EIF4E1B (ENSRROG00000042084)	SNCB (ENSRROG00000038785)	CDHR2 (ENSRROG00000033344)	RNF44 (ENSRROG00000043491)	FAF2 (ENSRROG00000002721)	CLTB (ENSRROG00000041657)	ENSRROG00000039570	ENSRROG00000043701
Atlantogenata	ANCESTRAL SPECIES	38	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737.i #33	ENSGT00530000063801.b #34	ENSGT01080000257333.A.a.b.a.a	ENSGT00940000158111 #35	ENSGT00840000130048 #36
Xenarthra	ANCESTRAL SPECIES	138	ENSGT00390000014026	ENSGT00420000029926	ENSGT00730000111841	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00390000010799.u.b.b ##11	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23
Armadillo	MODERN SPECIES	2967	DKKL1 (ENSDNOG00000039573)	KASH5 (ENSDNOG00000030659)	ENSDNOG00000040100	SLC17A7 (ENSDNOG00000017070) #7	PIH1D1 (ENSDNOG00000046437) #8	ALDH16A1 (ENSDNOG00000034701) #9	ENSDNOG00000035370 ##11	RCN3 (ENSDNOG00000035897) #14	NOSIP (ENSDNOG00000045723) #15	PRRG2 (ENSDNOG00000038223) #16	PRR12 (ENSDNOG00000041652) #17	RRAS (ENSDNOG00000041406) #18	SCAF1 (ENSDNOG00000030669) #19	IRF3 (ENSDNOG00000040858) #20	BCL2L12 (ENSDNOG00000045620)	PRMT1 (ENSDNOG00000035806) #22	ENSDNOG00000034266 #23
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737.i #33	ENSGT00530000063801.b #34	ENSGT00960000186612.A.b	ENSGT00390000011694	ENSGT00940000157783	ENSGT00940000160506
Tenrec	MODERN SPECIES	2438																PRMT1 (ENSETEG00000007396) #22
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799.u.b.a.a ##11	ENSGT00390000002732.n #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000161923 #28	ENSGT00940000159302 #29	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00940000161737.i #33	ENSGT00530000063801.b #34	ENSGT00960000186612.A.b	ENSGT00390000011694	ENSGT00940000157783	ENSGT00940000160506
Elephant	MODERN SPECIES	375	PTH2 (ENSLAFG00000026150)	SLC17A7 (ENSLAFG00000016196) #7	PIH1D1 (ENSLAFG00000016200) #8	ENSLAFG00000016203	FLT3LG (ENSLAFG00000016211) #10	RPL13A (ENSLAFG00000016213) ##11	RPS11 (ENSLAFG00000016217) #12	RCN3 (ENSLAFG00000011677) #14	NOSIP (ENSLAFG00000017025) #15	PRRG2 (ENSLAFG00000026190) #16	PRR12 (ENSLAFG00000016051) #17	RRAS (ENSLAFG00000028763) #18	SCAF1 (ENSLAFG00000021360) #19	IRF3 (ENSLAFG00000028074) #20	ENSLAFG00000022155 #13	PRMT1 (ENSLAFG00000018053) #22	ENSLAFG00000027232 ##23	TSKS (ENSLAFG00000016910) #24	AP2A1 (ENSLAFG00000027046) #25	FUZ (ENSLAFG00000029729) #26	MED25 (ENSLAFG00000014186) #27	PNKP (ENSLAFG00000022483) #29	TBC1D17 (ENSLAFG00000028149) #31	IL4I1 (ENSLAFG00000005731) #32	NUP62 (ENSLAFG00000020923) #33	ATF5 (ENSLAFG00000010812) #34	ENSLAFG00000001144	ENSLAFG00000023117	ENSLAFG00000003556	ENSLAFG00000031844	ENSLAFG00000022646
Hyrax	MODERN SPECIES	1982													SCAF1 (ENSPCAG00000008528) #19	IRF3 (ENSPCAG00000008633) #20	BCL2L12 (ENSPCAG00000008665)	PRMT1 (ENSPCAG00000008724) #22	CPT1C (ENSPCAG00000008779) #23
Marsupialia	ANCESTRAL SPECIES	27	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799 #11	ENSGT00390000002732.n.cc.b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505 #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT01030000234606.a.b.d.h	ENSGT00940000160506
Opossum	MODERN SPECIES	3	ENSMODG00000013712	ENSMODG00000013699	ENSMODG00000013683 #8	ALDH16A1 (ENSMODG00000013676) #9	RPL13A (ENSMODG00000023391) #11	ENSMODG00000013434 #12	ENSMODG00000013649 #13	RCN3 (ENSMODG00000013632) #14	NOSIP (ENSMODG00000013629) #15	ENSMODG00000013620 #16	ENSMODG00000013613 #17	RRAS (ENSMODG00000037260) #18	ENSMODG00000023396	ENSMODG00000041939 #19	IRF3 (ENSMODG00000013603) #20	PRMT1 (ENSMODG00000013595) #22	ENSMODG00000013567 #23	ENSMODG00000013440 #24	FUZ (ENSMODG00000013403) #26	ENSMODG00000043953 #27	AKT1S1 (ENSMODG00000044767) #30	PNKP (ENSMODG00000013400) #29	TBC1D17 (ENSMODG00000013390) #31	IL4I1 (ENSMODG00000013380) #32	ZSWIM9 (ENSMODG00000013339)	ENSMODG00000002376	ENSMODG00000044194	ENSMODG00000013336	ENSMODG00000013311	ENSMODG00000042052	ENSMODG00000047525
Marsupialia_b	ANCESTRAL SPECIES	28	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799 #11	ENSGT00390000002732.n.cc.b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.`b.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT01030000234606.a.b.d.g	ENSGT01100000263521.a.b.a.b
Diprotodontia	ANCESTRAL SPECIES	45	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799 #11	ENSGT00390000002732.n.cc.b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.`b.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT01030000234606.a.b.d.g	ENSGT01100000263521.a.b.a.b
Diprotodontia_a	ANCESTRAL SPECIES	40	ENSGT00390000001927.b	ENSGT00940000161908	ENSGT00510000048192 #8	ENSGT00940000161135 #9	ENSGT00530000064424 #10	ENSGT00390000010799 #11	ENSGT00390000002732.n.cc.b #12	ENSGT01100000263475.d.b #13	ENSGT01010000222360.G #14	ENSGT00390000015505.`b.a #15	ENSGT00950000183084.b.a.a #16	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154700 #22	ENSGT01060000248595.b.a.b.b #23	ENSGT00390000002611 #24	ENSGT00950000182838.A.a.a #25	ENSGT00390000010727 #26	ENSGT00940000160439 #27	ENSGT00940000159302 #29	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000162082 #32	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT01030000234606.a.b.d.g	ENSGT01100000263521.a.b.a.b
koala	MODERN SPECIES	100	BAX (ENSPCIG00000007329)	DHDH (ENSPCIG00000007331)	TULP2 (ENSPCIG00000007335)	ENSPCIG00000007337 #8	ALDH16A1 (ENSPCIG00000007338) #9	ENSPCIG00000032295 #10	ENSPCIG00000007340 #11	RPS11 (ENSPCIG00000007352) #12	ENSPCIG00000031152 #13	RCN3 (ENSPCIG00000007365) #14	NOSIP (ENSPCIG00000007366) #15	PRR12 (ENSPCIG00000007368) #17	RRAS (ENSPCIG00000007369) #18	ENSPCIG00000032871	ENSPCIG00000007371 #20	PRMT1 (ENSPCIG00000007372) #22	CPT1C (ENSPCIG00000007931) #23	ENSPCIG00000007939	TSKS (ENSPCIG00000007950) #24	AP2A1 (ENSPCIG00000008128) #25	FUZ (ENSPCIG00000018698) #26	MED25 (ENSPCIG00000018700) #27	PNKP (ENSPCIG00000018702) #29	AKT1S1 (ENSPCIG00000018704) #30	TBC1D17 (ENSPCIG00000018722) #31	IL4I1 (ENSPCIG00000019248) #32	ATF5 (ENSPCIG00000019249) #34	LIG1 (ENSPCIG00000019250)	ENSPCIG00000031518	ENSPCIG00000019251	ENSPCIG00000019252
Common wonbat	MODERN SPECIES	908	ENSVURG00010013118	DHDH (ENSVURG00010013131)	NUCB1 (ENSVURG00010013155)	RCN3 (ENSVURG00010013165) #14	ENSVURG00010013185	ALDH16A1 (ENSVURG00010013351) #9	ENSVURG00010013365 #10	ENSVURG00010013379 #11	ENSVURG00010013585 #13	ENSVURG00010013595 #15	PRRG2 (ENSVURG00010013604) #16	ENSVURG00010013611 #17	RRAS (ENSVURG00010013618) #18	SCAF1 (ENSVURG00010013628) #19	ENSVURG00010013632 #20	PRMT1 (ENSVURG00010013644) #22	CPT1C (ENSVURG00010013715) #23	TSKS (ENSVURG00010013896) #24	AP2A1 (ENSVURG00010013930) #25	FUZ (ENSVURG00010013964) #26	ENSVURG00010013975 #27	ENSVURG00010013985 #27	ENSVURG00010014000 #29	AKT1S1 (ENSVURG00010014043) #30	TBC1D17 (ENSVURG00010014054) #31	IL4I1 (ENSVURG00010014090) #32	ATF5 (ENSVURG00010014098) #34	LIG1 (ENSVURG00010014106)	ZSWIM9 (ENSVURG00010014122)	ENSVURG00010014129	ENSVURG00010014145
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000020592	ENSSHAG00000030170	ENSSHAG00000004243	ENSSHAG00000023573 #8	ENSSHAG00000030327 #9	ENSSHAG00000021286 #11	ENSSHAG00000004834 #13	RCN3 (ENSSHAG00000029475) #14	ENSSHAG00000021649 #15	ENSSHAG00000022432 #17	ENSSHAG00000025252 #17	RRAS (ENSSHAG00000000270) #18	ENSSHAG00000030250 #19	ENSSHAG00000003813 #20	CPT1C (ENSSHAG00000023518) #23	PRMT1 (ENSSHAG00000003582) #22	TSKS (ENSSHAG00000022449) #24	ENSSHAG00000026783 #25	ENSSHAG00000028754 #25	FUZ (ENSSHAG00000025237) #26	MED25 (ENSSHAG00000031341) #27	PNKP (ENSSHAG00000029261) #29	AKT1S1 (ENSSHAG00000028868) #30	TBC1D17 (ENSSHAG00000006794) #31	IL4I1 (ENSSHAG00000031803) #32	ENSSHAG00000024753 #34	ENSSHAG00000006383	ENSSHAG00000022723	ENSSHAG00000027706	ENSSHAG00000004825	ENSSHAG00000027513
Platypus	MODERN SPECIES	1	ENSOANG00000048566	PPFIA3 (ENSOANG00000000395)	ENSOANG00000040618	TRPM4 (ENSOANG00000005782)	ENSOANG00000038288	ENSOANG00000050286 #13	RCN3 (ENSOANG00000004103) #14	NOSIP (ENSOANG00000049297) #15	ENSOANG00000037549 #16	ENSOANG00000037579 #17	ENSOANG00000041740 #17	RRAS (ENSOANG00000038998) #18	ENSOANG00000040732 #19	ENSOANG00000046499 #20	ENSOANG00000042777	PRMT1 (ENSOANG00000037078) #22	ENSOANG00000051300	CPT1C (ENSOANG00000045910) #23	TSKS (ENSOANG00000047454) #24	AP2A1 (ENSOANG00000042299) #25	ENSOANG00000049102 #26	MED25 (ENSOANG00000043111) #27	PNKP (ENSOANG00000040153) #29	AKT1S1 (ENSOANG00000045466) #30	TBC1D17 (ENSOANG00000050154) #31	ENSOANG00000043628 #32	ENSOANG00000046696	LIG1 (ENSOANG00000002678)	ENSOANG00000051006 #34	ENSOANG00000049253	ENSOANG00000037864
Sauria	ANCESTRAL SPECIES	38	ENSGT01100000267133	ENSGT00950000182838.A.a.a #25	ENSGT00390000002611 #24	ENSGT01060000248595.b.a.b.b #23	ENSGT00950000186131	ENSGT00940000155391.b	ENSGT01070000256721	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT00940000166296	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00950000183145.A.a	ENSGT00940000154852.b	ENSGT00940000161663
Lepidosauria	ANCESTRAL SPECIES	75	ENSGT00940000166966	ENSGT00530000064424 #10	ENSGT00940000166365	ENSGT00950000185347	ENSGT00990000204711	ENSGT00940000155871	ENSGT00390000014026	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000175652	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433
tuatara	MODERN SPECIES	120					ENSSPUG00000009388 #23	ENSSPUG00000009367	ENSSPUG00000009352 #15	ENSSPUG00000009344 #15	ENSSPUG00000009329 #20	SCAF1 (ENSSPUG00000009311) #19	RRAS (ENSSPUG00000009262) #18	PRR12 (ENSSPUG00000009219) #17	ENSSPUG00000009194	BAX (ENSSPUG00000009144)	ENSSPUG00000009115	PRMT1 (ENSSPUG00000009087) #22	ENSSPUG00000009068
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000010799 #11	ENSGT00390000007946.c.a	ENSGT00390000007946.c.b	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000166966	ENSGT00390000014026	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748	ENSGT00940000157795	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT00390000005976.b	ENSGT00940000160506
Laterata	ANCESTRAL SPECIES	34	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000166966	ENSGT00530000064424 #10	ENSGT00940000166365	ENSGT00950000185347	ENSGT00390000014026	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748	ENSGT00940000157795	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT00940000163371.b.a.a	ENSGT00390000007119	ENSGT00390000005976.b
Common wall lizard	MODERN SPECIES	4	FLT3LG (ENSPMRG00000018003) #10	ENSPMRG00000017996	ENSPMRG00000017985	ENSPMRG00000017978	ENSPMRG00000017973	ENSPMRG00000017966	ENSPMRG00000017958	ENSPMRG00000017955	TEAD2 (ENSPMRG00000017948)	CD37 (ENSPMRG00000017941)	ENSPMRG00000017925	BAX (ENSPMRG00000017916)	ENSPMRG00000017911	ENSPMRG00000017910	GYS1 (ENSPMRG00000017901)	PRMT1 (ENSPMRG00000017893) #22	ENSPMRG00000022359	ENSPMRG00000022357	AKT1S1 (ENSPMRG00000022352) #30	TBC1D17 (ENSPMRG00000022346) #31	ENSPMRG00000022342	ENSPMRG00000022339	ACP4 (ENSPMRG00000022323)	RABEP2 (ENSPMRG00000022233)	TUFM (ENSPMRG00000022210)	ATXN2L (ENSPMRG00000022197)	SH2B1 (ENSPMRG00000022174)	ENSPMRG00000022139	ATP2A1 (ENSPMRG00000021557)	ENSPMRG00000021382	ENSPMRG00000021375
Argentine black and white tegu	MODERN SPECIES	38	ENSSMRG00000004151 #8	ENSSMRG00000004154	ENSSMRG00000004165	ENSSMRG00000004170	ENSSMRG00000004174	ENSSMRG00000004175	DKKL1 (ENSSMRG00000004180)	ENSSMRG00000004186	CD37 (ENSSMRG00000004187)	ENSSMRG00000004189	ENSSMRG00000004198	ENSSMRG00000004199	ENSSMRG00000004204	ENSSMRG00000004205	GYS1 (ENSSMRG00000004209)	PRMT1 (ENSSMRG00000004215) #22	ENSSMRG00000004219	ENSSMRG00000004222	AKT1S1 (ENSSMRG00000004223) #30	TBC1D17 (ENSSMRG00000004224) #31	ENSSMRG00000004229	ENSSMRG00000004231	ENSSMRG00000004235	ACP4 (ENSSMRG00000004243)	RABEP2 (ENSSMRG00000004245)	TUFM (ENSSMRG00000004247)	ATXN2L (ENSSMRG00000004249)	SH2B1 (ENSSMRG00000004252)	ATP2A1 (ENSSMRG00000004267)	ENSSMRG00000004275	ENSSMRG00000004278
Toxicofera	ANCESTRAL SPECIES	13	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000166966	ENSGT00530000064424 #10	ENSGT00940000166365	ENSGT00970000198077	ENSGT00410000026259	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748	ENSGT00940000157795	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT00390000005976.b	ENSGT00940000160506
Lizard	MODERN SPECIES	901												ENSACAG00000004652	ENSACAG00000038985	ENSACAG00000029107	ENSACAG00000004713	ENSACAG00000004864 #22	ENSACAG00000015509	ENSACAG00000004969 #31	ENSACAG00000005085	ENSACAG00000005091	ENSACAG00000005181	ENSACAG00000040467	ENSACAG00000005243	ENSACAG00000037141	ENSACAG00000026973	ENSACAG00000005399	ENSACAG00000005425	SH2B1 (ENSACAG00000005528)	ATP2A1 (ENSACAG00000005552)	ENSACAG00000028673	ENSACAG00000005761
Elapidae	ANCESTRAL SPECIES	16	ENSGT00940000161908	ENSGT00390000007946.d	ENSGT00390000010799.y #11	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT00940000166966	ENSGT01030000236559	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748	ENSGT00940000157795.e.a	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT00390000007119	ENSGT01000000216248	ENSGT00390000005976.b
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	21														ENSNNAG00000012258	ENSNNAG00000012321	ENSNNAG00000012499 #22
Indian cobra	MODERN SPECIES	337	ENSNNAG00000012197 #11	SLC17A7 (ENSNNAG00000012026) #7	ENSNNAG00000011986 #8	ENSNNAG00000011851	ENSNNAG00000011833	ENSNNAG00000011825	ENSNNAG00000011809	ENSNNAG00000011578	ENSNNAG00000011526	ENSNNAG00000011329	BAX (ENSNNAG00000011197)	ENSNNAG00000011178	ENSNNAG00000011165	ENSNNAG00000011147	GYS1 (ENSNNAG00000011072)	PRMT1 (ENSNNAG00000010988) #22	ENSNNAG00000010960	ENSNNAG00000010934	ENSNNAG00000010910 #30	TBC1D17 (ENSNNAG00000010847) #31	ENSNNAG00000010822	ENSNNAG00000010636	ENSNNAG00000010608	ENSNNAG00000010255	RABEP2 (ENSNNAG00000010115)	TUFM (ENSNNAG00000010075)	ENSNNAG00000008586	SH2B1 (ENSNNAG00000008404)	ATP2A1 (ENSNNAG00000008263)	ENSNNAG00000008213	ENSNNAG00000008179
Elapidae_a	ANCESTRAL SPECIES	22	ENSGT00390000010799.y #11	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT01090000261209	ENSGT00940000166966	ENSGT01030000236559	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157.e.a	ENSGT00940000163157.e.b	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748	ENSGT00940000157795.e.a	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT00990000210513	ENSGT00960000191410	ENSGT01070000254666
Blue-lipped sea krait	MODERN SPECIES	3881																PRMT1 (ENSLLTG00000014052) #22	ENSLLTG00000014058	ENSLLTG00000014062
Acanthophiinae	ANCESTRAL SPECIES	25	ENSGT00390000010799.y #11	ENSGT00940000159110 #7	ENSGT00510000048192 #8	ENSGT01090000261209	ENSGT00940000166966	ENSGT01030000236559	ENSGT00950000182956.b.a	ENSGT00940000161485	ENSGT00940000163157.e.a	ENSGT00940000163157.e.b	ENSGT01090000260003.a.b.a	ENSGT00960000188719	ENSGT00950000182841.b.b.b	ENSGT00950000182841.b.b.a	ENSGT00390000018612.a.a	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397.i #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161433	ENSGT00530000063743.a	ENSGT00940000156748.a	ENSGT00940000157795.e.a	ENSGT00950000183191.a.a	ENSGT00940000159895	ENSGT01070000254666	ENSGT00990000210513	ENSGT00960000191410
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	165																ENSPTXG00000015424 #22
Eastern brown snake	MODERN SPECIES	53	SLC17A7 (ENSPTXG00000015577) #7	ENSPTXG00000015576 #8	ENSPTXG00000015575	ENSPTXG00000015574	PTH2 (ENSPTXG00000015573)	ENSPTXG00000015571	ENSPTXG00000015570	ENSPTXG00000015343	CD37 (ENSPTXG00000015338)	ENSPTXG00000015332	BAX (ENSPTXG00000015327)	ENSPTXG00000015324	ENSPTXG00000015321	ENSPTXG00000015320	GYS1 (ENSPTXG00000015316)	PRMT1 (ENSPTXG00000015314) #22	ENSPTXG00000015313	ENSPTXG00000015312	ENSPTXG00000015310 #30	TBC1D17 (ENSPTXG00000014692) #31	ENSPTXG00000014683	ENSPTXG00000014656	ENSPTXG00000014655	ENSPTXG00000014576	RABEP2 (ENSPTXG00000014574)	TUFM (ENSPTXG00000014570)	ENSPTXG00000014473	SH2B1 (ENSPTXG00000014470)	ATP2A1 (ENSPTXG00000014463)	ENSPTXG00000014461	ENSPTXG00000014460
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	417															ENSNSUG00000007287	ENSNSUG00000007288 #22
Mainland tiger snake	MODERN SPECIES	91	SLC17A7 (ENSNSUG00000005848) #7	ENSNSUG00000005849 #8	ENSNSUG00000005850	ENSNSUG00000005852	ENSNSUG00000005853	ENSNSUG00000005854	ENSNSUG00000005856	ENSNSUG00000005857	ENSNSUG00000005858	ENSNSUG00000005860	BAX (ENSNSUG00000005862)	ENSNSUG00000005863	ENSNSUG00000005864	ENSNSUG00000005865	GYS1 (ENSNSUG00000005866)	PRMT1 (ENSNSUG00000005867) #22	ENSNSUG00000005868	ENSNSUG00000005869	ENSNSUG00000005880 #30	TBC1D17 (ENSNSUG00000005881) #31	ENSNSUG00000005896	ENSNSUG00000005897	ENSNSUG00000005913	ENSNSUG00000005933	RABEP2 (ENSNSUG00000005937)	ENSNSUG00000005941	ENSNSUG00000005943	SH2B1 (ENSNSUG00000006625)	ATP2A1 (ENSNSUG00000006632)	ENSNSUG00000006636	ENSNSUG00000006637
Archelosauria	ANCESTRAL SPECIES	43	ENSGT00390000010727 #26	ENSGT00950000182838.A.a.a #25	ENSGT00390000002611 #24	ENSGT01060000248595.b.a.b.b #23	ENSGT00950000186131	ENSGT00940000155391.b	ENSGT01070000256721	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT00940000166296	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00950000183145.A.a	ENSGT00940000154852.b
Cryptodira	ANCESTRAL SPECIES	40	ENSGT00390000010727 #26	ENSGT00950000182838.A.a.a #25	ENSGT00390000002611 #24	ENSGT01060000248595.b.a.b.b #23	ENSGT00950000186131	ENSGT00940000155391.b	ENSGT01070000256721	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00530000063801.b #34	ENSGT00940000157783	ENSGT00390000011694	ENSGT00940000167648	ENSGT00940000166296	ENSGT00910000144307	ENSGT00950000182932.A.b.b	ENSGT00950000183145.A.a	ENSGT00940000154852.b
Testudinoidea	ANCESTRAL SPECIES	35	ENSGT00390000010727 #26	ENSGT00950000182838.A.a.a #25	ENSGT00390000002611 #24	ENSGT01060000248595.b.a.b.b #23	ENSGT00950000186131	ENSGT00940000155391.b	ENSGT01070000256721	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000168900	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161465	ENSGT00560000077365	ENSGT00940000162754	ENSGT00940000160092.C	ENSGT00390000004520	ENSGT01100000267101	ENSGT00940000153561.b.a.b.i	ENSGT00940000161770
Testudinidae	ANCESTRAL SPECIES	47	ENSGT00940000160439 #27	ENSGT00390000010727 #26	ENSGT00950000182838.A.a.a #25	ENSGT00390000002611 #24	ENSGT01060000248595.b.a.b.b #23	ENSGT00950000186131	ENSGT01070000256721	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160569 #20	ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00390000017397 #30	ENSGT00940000158989 #31	ENSGT00940000164903	ENSGT00940000160179	ENSGT00950000182973.b.b	ENSGT00940000161465	ENSGT00560000077365	ENSGT00940000162754	ENSGT00940000160092.C	ENSGT00390000004520	ENSGT00950000183186.A	ENSGT00940000153561.b.a.b.i	ENSGT00940000161770	ENSGT00940000160261
Goode s thornscrub tortoise	MODERN SPECIES	138	SNRNP70 (ENSGEVG00005012171)	LIN7B (ENSGEVG00005012203)	ENSGEVG00005012237	ENSGEVG00005012365	ENSGEVG00005012407	TRPM4 (ENSGEVG00005012560)	PNKP (ENSGEVG00005012999) #29	ENSGEVG00005013075	NOSIP (ENSGEVG00005013321) #15	ENSGEVG00005013356	PRR12 (ENSGEVG00005013397) #17	RRAS (ENSGEVG00005013436) #18	SCAF1 (ENSGEVG00005013466) #19	ENSGEVG00005013516 #20	BCL2L12 (ENSGEVG00005013573)	PRMT1 (ENSGEVG00005013618) #22	POLR2L (ENSGEVG00005013673)	ENSGEVG00005013715	AKT1S1 (ENSGEVG00005013764) #30	ENSGEVG00005013799	TBC1D17 (ENSGEVG00005013856) #31	ENSGEVG00005013928	NAPSA (ENSGEVG00005014028)	ENSGEVG00005014683	NR1H2 (ENSGEVG00005014880)	ENSGEVG00005015020	POLD1 (ENSGEVG00005015329)	SPIB (ENSGEVG00005015372)	MYBPC2 (ENSGEVG00005015625)	EMC10 (ENSGEVG00005017669)	ENSGEVG00005017732
Abingdon island giant tortoise	MODERN SPECIES	2646	ENSCABG00000001849	PNKP (ENSCABG00000001844) #29	MED25 (ENSCABG00000001839) #27	FUZ (ENSCABG00000001836) #26	TSKS (ENSCABG00000001816) #24	CPT1C (ENSCABG00000001803) #23	ENSCABG00000001801	ENSCABG00000001800	ENSCABG00000001797	ENSCABG00000001790 ##14	NOSIP (ENSCABG00000001786) #15	ENSCABG00000018638	RRAS (ENSCABG00000018634) #18	ENSCABG00000018632 #19	ENSCABG00000018631 #20	PRMT1 (ENSCABG00000018611) #22	POLR2L (ENSCABG00000018608)	ENSCABG00000018606	ENSCABG00000018605	ENSCABG00000018603	NR1H2 (ENSCABG00000018595)	POLD1 (ENSCABG00000018588)	SPIB (ENSCABG00000018583)
Emydidae	ANCESTRAL SPECIES	423																ENSGT00940000154700 #22	ENSGT00940000168900
painted turtle	MODERN SPECIES	1021	FUZ (ENSCPBG00000007582) #26	AP2A1 (ENSCPBG00000006964) #25	TSKS (ENSCPBG00000006818) #24	CPT1C (ENSCPBG00000006801) #23	ENSCPBG00000006791	ENSCPBG00000006771	ENSCPBG00000006756	ENSCPBG00000006743 ##14	ENSCPBG00000006720 #15	ENSCPBG00000006710	RRAS (ENSCPBG00000006694) #18	ENSCPBG00000006673 #19	IRF3 (ENSCPBG00000006661) #20	ENSCPBG00000006655	ENSCPBG00000006651	PRMT1 (ENSCPBG00000006644) #22	ENSCPBG00000006637	ENSCPBG00000006631	AKT1S1 (ENSCPBG00000006590) #30	TBC1D17 (ENSCPBG00000006560) #31	ATF5 (ENSCPBG00000006547) #34	LIG1 (ENSCPBG00000006422)	ZSWIM9 (ENSCPBG00000006399)	ENSCPBG00000006398	ENSCPBG00000006396	ZNF628 (ENSCPBG00000006394)	NAT14 (ENSCPBG00000006392)	ENSCPBG00000006355
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2463																ENSTMTG00000016870 #22
Three-toed box turtle	MODERN SPECIES	266																ENSTMTG00000011537 #22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Aves	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	24	ENSTGUG00000029745	ENSTGUG00000019262	ENSTGUG00000020795	ENSTGUG00000023482	ENSTGUG00000028952	ENSTGUG00000019190	ENSTGUG00000026564	ENSTGUG00000029158	ENSTGUG00000022322 #14	ENSTGUG00000023966	ENSTGUG00000020492	ENSTGUG00000025910	ENSTGUG00000022956	RPS9 (ENSTGUG00000027604)	ENSTGUG00000029386	ENSTGUG00000019094 #22	ENSTGUG00000023382	TNNI3 (ENSTGUG00000023974)	ENSTGUG00000019160	HSPBP1 (ENSTGUG00000025040)	KMT5C (ENSTGUG00000021288)	ENSTGUG00000020983	LENG8 (ENSTGUG00000018887)	U2AF2 (ENSTGUG00000019395)	ENSTGUG00000028612	ENSTGUG00000021677	ENSTGUG00000028256	UBE2S (ENSTGUG00000024004)	ENSTGUG00000027428	ISOC2 (ENSTGUG00000022600)	ENSTGUG00000024568
Zebra finch	MODERN SPECIES	24	ENSTGUG00000029696	ENSTGUG00000021583	ENSTGUG00000024408	ENSTGUG00000023904	ENSTGUG00000022879	ENSTGUG00000025228	ENSTGUG00000028111	ENSTGUG00000022028 #14	ENSTGUG00000029326	ENSTGUG00000004375	ENSTGUG00000025239	ENSTGUG00000019338	ENSTGUG00000027725	RPS9 (ENSTGUG00000022536)	ENSTGUG00000020986	ENSTGUG00000027101 #22	ENSTGUG00000015659	BAX (ENSTGUG00000015645)	ENSTGUG00000020449	ENSTGUG00000019509	ENSTGUG00000019271 #9	PIH1D1 (ENSTGUG00000019254) #8	SLC17A7 (ENSTGUG00000023432) #7	RPL13A (ENSTGUG00000017025) #11	DHDH (ENSTGUG00000022809)	ENSTGUG00000029399	RASIP1 (ENSTGUG00000028587)	ENSTGUG00000024568	ISOC2 (ENSTGUG00000022600)	ENSTGUG00000027428	UBE2S (ENSTGUG00000024004)
Common canary	MODERN SPECIES	344																ENSSCAG00000008088 #22
Anura	ANCESTRAL SPECIES	331															ENSGT00940000154318.B	ENSGT00940000154700 #22	ENSGT00390000007087.ec.a	ENSGT00390000007087.dc	ENSGT00940000165851	ENSGT00390000017397 #30
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000013575	GRIK5 (ENSLLEG00000013044)	ENSLLEG00000012995	ENSLLEG00000012947	TMEM145 (ENSLLEG00000012789)	RUVBL2 (ENSLLEG00000012357)	ENSLLEG00000012274	NTF4 (ENSLLEG00000012254)	ENSLLEG00000012008	ENSLLEG00000011972	ENSLLEG00000011930	ENSLLEG00000011555	CLUAP1 (ENSLLEG00000010873)	ENSLLEG00000010803	ENSLLEG00000010651	PRMT1 (ENSLLEG00000010036) #22	ENSLLEG00000009946	ENSLLEG00000009866	ENSLLEG00000009852	ENSLLEG00000009832	ENSLLEG00000009755 #30	TBC1D17 (ENSLLEG00000009548) #31	ENSLLEG00000009508	ENSLLEG00000009283	ENSLLEG00000009156	ENSLLEG00000008740 #26	ENSLLEG00000008690	ENSLLEG00000028206	ENSLLEG00000028181	ENSLLEG00000028164	ENSLLEG00000028142
Frog	MODERN SPECIES	7	znf484 (ENSXETG00000017642) #15	chuk (ENSXETG00000017643)	prrg2 (ENSXETG00000017647)	prr12 (ENSXETG00000002852) #17	rras (ENSXETG00000031241) #18	kcnj11 (ENSXETG00000002854)	SCAF1 (ENSXETG00000040627) #19	ENSXETG00000033198 #20	irf3 (ENSXETG00000002863) #20	ENSXETG00000039807	ric8a (ENSXETG00000002868)	ENSXETG00000002872	igf3 (ENSXETG00000002876)	ENSXETG00000039733	bcl2l12 (ENSXETG00000036256)	prmt1 (ENSXETG00000002877) #22	ENSXETG00000045156	polr2l.2 (ENSXETG00000002878)	tspan4 (ENSXETG00000036161)	phlda2 (ENSXETG00000026033)	akt1s1 (ENSXETG00000002887) #30	fut2 (ENSXETG00000047708)	fuz (ENSXETG00000002889) #26	napsa (ENSXETG00000002892)	ENSXETG00000040337	ENSXETG00000023514	ENSXETG00000041912	tbc1d17 (ENSXETG00000033187) #31	bax (ENSXETG00000023523)	slc6a16 (ENSXETG00000023526)	ENSXETG00000037262
Coelacanth	MODERN SPECIES	305		FUZ (ENSLACG00000018026) #26	TBC1D17 (ENSLACG00000017992) #31	AKT1S1 (ENSLACG00000017981) #30	ENSLACG00000017974	LIN7B (ENSLACG00000017949)	ENSLACG00000017932	ENSLACG00000017928	RUVBL2 (ENSLACG00000017894)	GYS1 (ENSLACG00000017841)	ENSLACG00000017787	ENSLACG00000017755	ENSLACG00000017698	AP2A1 (ENSLACG00000017580) #25	POLR2L (ENSLACG00000017570)	PRMT1 (ENSLACG00000017467) #22	PRR12 (ENSLACG00000017291) #17	ENSLACG00000017177	RRAS (ENSLACG00000017138) #18	ENSLACG00000017119	SCAF1 (ENSLACG00000017048) #19	IRF3 (ENSLACG00000017007) #20	ENSLACG00000016927	ENSLACG00000016867	NOSIP (ENSLACG00000016760) #15	rcn3 (ENSLACG00000016727) ##14	ENSLACG00000016652	ENSLACG00000016143	ENSLACG00000016099	ENSLACG00000022602	EMC10 (ENSLACG00000015911)
Actinopterygii	ANCESTRAL SPECIES	339											ENSGT00940000158268.b	ENSGT00440000037417.B #17	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT00940000155391.b	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15
Neopterygii	ANCESTRAL SPECIES	720															ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22
Osteoglossocephalai	ANCESTRAL SPECIES	83	ENSGT00940000167070	ENSGT00940000165867.B	ENSGT00390000014595.a.b	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT00940000155391.b	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT01030000235305	ENSGT00950000182841.a	ENSGT00940000161135 #9	ENSGT00940000164903.a	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00390000002732 #12	ENSGT01090000260003.a.b.b.b	ENSGT00390000009532.A.d.b	ENSGT00940000161346
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	187	ENSGT00940000166574.b	ENSGT00390000015278	ENSGT00940000167070	ENSGT00940000165867.B	ENSGT00390000014595.a.b	ENSGT00940000165851	ENSGT00940000155391.b.b	ENSGT01010000222360.D.a ##14	ENSGT00940000158693.C	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.k #17	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a.g #25	ENSGT00940000154700.c #22	ENSGT00950000182818.A.m	ENSGT00980000198607	ENSGT00940000164511.C.r.a	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166481.g	ENSGT00950000182841.a.g	ENSGT00940000161135 #9	ENSGT00940000164903.a.g	ENSGT00940000160292	ENSGT00390000002732 #12
P. kingsleyae	MODERN SPECIES	58	ENSPKIG00000018888	thoc6 (ENSPKIG00000018907)	srrm2 (ENSPKIG00000018936)	ENSPKIG00000018969	ENSPKIG00000018994	tspan4b (ENSPKIG00000019030)	rcn3 (ENSPKIG00000019083) ##14	ENSPKIG00000019098	TRPM4 (ENSPKIG00000019124)	ENSPKIG00000019247 #19	ENSPKIG00000019283	PRR12 (ENSPKIG00000019321) #17	rras (ENSPKIG00000019373) #18	ENSPKIG00000019407	AP2A1 (ENSPKIG00000019518) #25	prmt1 (ENSPKIG00000019643) #22	prl (ENSPKIG00000019703)	si:dkey-16p21.8 (ENSPKIG00000019729)	ENSPKIG00000019764	ENSPKIG00000019879 #23	rps11 (ENSPKIG00000019942) #12	snrnp70 (ENSPKIG00000019992)	ENSPKIG00000020024	ENSPKIG00000020058	aldh16a1 (ENSPKIG00000020091) #9	ENSPKIG00000020133	syt5b (ENSPKIG00000020148)	tnnt1 (ENSPKIG00000020175)	pih1d1 (ENSPKIG00000020208) #8	dcun1d3 (ENSPKIG00000020238)	ENSPKIG00000020248
Asian bonytongue	MODERN SPECIES	23	srrm2 (ENSSFOG00015027130)	ENSSFOG00015006326	ENSSFOG00015006309	ENSSFOG00015029212	tspan4b (ENSSFOG00015006281)	ENSSFOG00015032063	rcn3 (ENSSFOG00015030940) ##14	ENSSFOG00015024852	TRPM4 (ENSSFOG00015006159)	ENSSFOG00015031511 #19	ENSSFOG00015005993	PRR12 (ENSSFOG00015024563) #17	rras (ENSSFOG00015005953) #18	ENSSFOG00015005892	AP2A1 (ENSSFOG00015005800) #25	prmt1 (ENSSFOG00015005748) #22	prl (ENSSFOG00015005709)	ENSSFOG00015032473	ENSSFOG00015029154	pih1d1 (ENSSFOG00015005655) #8	tnnt1 (ENSSFOG00015005622)	syt5b (ENSSFOG00015005602)	ENSSFOG00015020517	ENSSFOG00015004824	aldh16a1 (ENSSFOG00015027454) #9	ENSSFOG00015004589	snrnp70 (ENSSFOG00015004562)	rps11 (ENSSFOG00015004554) #12	baxa (ENSSFOG00015004539)	bcat2 (ENSSFOG00015004484)	hsd17b14 (ENSSFOG00015029443)
Osteoglossiformes	ANCESTRAL SPECIES	216			ENSGT00940000164039.b.b	ENSGT00940000164039.a	ENSGT00940000166574.a	ENSGT00940000165867.A	ENSGT00940000154318.B	ENSGT00940000155391.b.a	ENSGT00390000015505 #15	ENSGT00940000158693.A	ENSGT00390000014700.b.a.b.b.b	ENSGT00940000160569 #20	ENSGT00440000037417.B.a.l #17	ENSGT00940000158268.b	ENSGT00950000182838.A.a.a.h #25	ENSGT00940000154700.d #22	ENSGT00950000182818.A.n	ENSGT00940000164511.C.r.b	ENSGT01060000248595.b.a.b.b.a.b #23	ENSGT00940000160609.e	ENSGT00390000002069	ENSGT00940000166481.h	ENSGT00940000167630	ENSGT00940000165368	ENSGT00950000182841.a.h	ENSGT00940000164903.a.h	ENSGT00940000153222.a.b.a	ENSGT00940000180096	ENSGT01090000260003.a.b.b.b	ENSGT00940000164717.a	ENSGT00940000167425.b
Asian bonytongue	MODERN SPECIES	12	ENSSFOG00015032809	ENSSFOG00015021511	ENSSFOG00015021472	ENSSFOG00015026156	ENSSFOG00015021448	ENSSFOG00015021407	ENSSFOG00015021391	pax10 (ENSSFOG00015029735)	nosip (ENSSFOG00015021355) #15	trpm4a (ENSSFOG00015021283)	ENSSFOG00015021240	irf3 (ENSSFOG00015021223) #20	PRR12 (ENSSFOG00015021192) #17	prrg2 (ENSSFOG00015021179)	AP2A1 (ENSSFOG00015021159) #25	prmt1 (ENSSFOG00015021136) #22	prl (ENSSFOG00015021124)	ENSSFOG00015021108	ENSSFOG00015021063 #23	ENSSFOG00015021050	dnaaf3 (ENSSFOG00015028239)	ENSSFOG00015021033	ENSSFOG00015015694	zgc:56095 (ENSSFOG00015015722)	ENSSFOG00015025240	kcnc3b (ENSSFOG00015015790)	lin7b (ENSSFOG00015024811)	ENSSFOG00015025549	ENSSFOG00015015854	ENSSFOG00015015864	ENSSFOG00015015876
P. kingsleyae	MODERN SPECIES	22	ccdc153 (ENSPKIG00000005633)	cbl (ENSPKIG00000005649)	ENSPKIG00000005677	ENSPKIG00000005686	ENSPKIG00000005705	ENSPKIG00000005725	pax10 (ENSPKIG00000005751)	nosip (ENSPKIG00000005790) #15	ENSPKIG00000005849	trpm4a (ENSPKIG00000005865)	ENSPKIG00000005962	irf3 (ENSPKIG00000006099) #20	PRR12 (ENSPKIG00000006170) #17	ENSPKIG00000006220	AP2A1 (ENSPKIG00000006280) #25	prmt1 (ENSPKIG00000006428) #22	ENSPKIG00000006597	ENSPKIG00000007039	ENSPKIG00000007073	ENSPKIG00000007186 #23
Clupeocephala	ANCESTRAL SPECIES	13	ENSGT00800000125268	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00990000207765	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a	ENSGT00940000161135 #9	ENSGT01100000263614	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00390000002732 #12	ENSGT01090000260003.a.b.b.b	ENSGT00940000156497.a
Euteleosteomorpha	ANCESTRAL SPECIES	159	ENSGT00800000125268	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00990000207765	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00940000165079.b	ENSGT00940000158951.f	ENSGT00530000063301.a.a.c.b	ENSGT00390000008812.b.b.b	ENSGT00530000064085.d	ENSGT00940000157917.a.a	ENSGT00940000162682.B.b	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f
Protacanthopterygii	ANCESTRAL SPECIES	201					ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000180096
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	826								ENSGT00940000158693.A.e.a	ENSGT00950000183205.b.a.b.a.a.n #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.f #17	ENSGT00940000158268.b.b	ENSGT00940000160972.b #18	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a #25	ENSGT00940000154700.e #22
Salmoninae_a	ANCESTRAL SPECIES	60	ENSGT00940000165851.e	ENSGT00940000154318.B	ENSGT00940000155391.b.q.a	ENSGT01010000222360.D.a.h ##14	ENSGT00390000015505 #15	ENSGT00940000158693.A.e.b	ENSGT00940000158693.A.e.a	ENSGT00950000183205.b.a.b.a.a.n #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.e.b #17	ENSGT00440000037417.B.a.f #17	ENSGT00940000158268.b.b	ENSGT00940000160972.b #18	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a #25	ENSGT00940000154700.e #22
Salmo	ANCESTRAL SPECIES	28	ENSGT00940000154318.B	ENSGT00940000155391.b.q.a	ENSGT01010000222360.D.a.h ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A.e.b	ENSGT00940000158693.A.e.a	ENSGT00950000183205.b.a.b.a.a.m.b #19	ENSGT01020000232005	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.f #17	ENSGT00940000158268.b.b	ENSGT00940000160972.b #18	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a #25	ENSGT00940000154700.e #22	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00940000158171	ENSGT00390000006617.e	ENSGT00390000014840.a	ENSGT00390000003337.e	ENSGT00390000007652.d	ENSGT00940000153496.a.a.q	ENSGT00940000161283	ENSGT00390000008964	ENSGT01030000234629.E.a.b.d	ENSGT00550000074873.ob.a.a.b.a
Atlantic salmon	MODERN SPECIES	22	pax10 (ENSSSAG00000001502)	rcn3 (ENSSSAG00000121730) ##14	nosip (ENSSSAG00000083323) #15	ENSSSAG00000089935	ENSSSAG00000108063	trpm4a (ENSSSAG00000001367)	trpm4a (ENSSSAG00000121637)	ENSSSAG00000103476 #19	ENSSSAG00000001297	ENSSSAG00000001275	ENSSSAG00000072342 #17	ENSSSAG00000117289	rras (ENSSSAG00000098374) #18	ENSSSAG00000001232	ENSSSAG00000065016 #25	prmt1 (ENSSSAG00000000712) #22	ENSSSAG00000000496	ENSSSAG00000000534	ENSSSAG00000000406	ENSSSAG00000121130	ENSSSAG00000000320	ENSSSAG00000000286	dhrs7b (ENSSSAG00000000277)	ENSSSAG00000118877	ENSSSAG00000075095	ENSSSAG00000085847	jpt2 (ENSSSAG00000002627)	ENSSSAG00000088647	ENSSSAG00000098109	mapk8ip3 (ENSSSAG00000002339)	nme3 (ENSSSAG00000002150)
River trout	MODERN SPECIES	25	ENSSTUG00000023711	tspan4b (ENSSTUG00000023690)	ENSSTUG00000023671	pax10 (ENSSTUG00000023656)	rcn3 (ENSSTUG00000023629) ##14	nosip (ENSSTUG00000023601) #15	trpm4a (ENSSTUG00000023198)	ENSSTUG00000023150 #19	ENSSTUG00000023142	ENSSTUG00000023108	PRR12 (ENSSTUG00000023092) #17	prrg2 (ENSSTUG00000023086)	rras (ENSSTUG00000023069) #18	ENSSTUG00000023056	AP2A1 (ENSSTUG00000022231) #25	prmt1 (ENSSTUG00000021688) #22	ENSSTUG00000021474	lin7b (ENSSTUG00000021278)	ENSSTUG00000021245	ENSSTUG00000021239	parp14rs1 (ENSSTUG00000021154)	ENSSTUG00000021144	dhrs7b (ENSSTUG00000021126)	tmem11 (ENSSTUG00000021114)	natd1 (ENSSTUG00000021110)	CRAMP1 (ENSSTUG00000021095)	jpt2 (ENSSTUG00000021077)	mapk8ip3 (ENSSTUG00000020567)	nme3 (ENSSTUG00000020510)	mrps34 (ENSSTUG00000020498)	spsb3a (ENSSTUG00000020487)
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000165851.e	ENSGT00940000154318.B	ENSGT00940000155391.b.q.a	ENSGT01010000222360.D.a.h ##14	ENSGT00390000015505 #15	ENSGT00940000158693.A.e.b	ENSGT00940000158693.A.e.a	ENSGT00950000183205.b.a.b.a.a.n #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.e.b.a #17	ENSGT00440000037417.B.a.f #17	ENSGT00940000158268.b.b	ENSGT00940000160972.b #18	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a #25	ENSGT00940000154700.e #22	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a	ENSGT00390000007652.d	ENSGT00940000153496.a.a.q	ENSGT00940000161283	ENSGT00390000008964	ENSGT01030000234629.E.a.b.d	ENSGT00550000074873.ob.a.a.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00940000165867.B	ENSGT00940000165851.e	ENSGT00940000154318.B	ENSGT00940000155391.b.q.a	ENSGT01010000222360.D.a.h ##14	ENSGT00390000015505 #15	ENSGT00940000158693.A.e.b	ENSGT00940000158693.A.e.a	ENSGT00950000183205.b.a.b.a.a.n #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.f #17	ENSGT00940000158268.b.b	ENSGT00940000160972.b #18	ENSGT00940000167194.a	ENSGT00950000182838.A.a.a.k.a #25	ENSGT00940000154700.e #22	ENSGT00940000180096.b	ENSGT00940000153222.a.b.a	ENSGT00940000155286.m.b	ENSGT01030000234586.A.a.a.b.g	ENSGT00940000154311.a.b.cb.a.b.a	ENSGT00390000014840.a	ENSGT00390000006617.e	ENSGT00940000158171	ENSGT00390000003337.f.a	ENSGT00390000007652.d	ENSGT00940000153496.a.a.q	ENSGT00940000161283	ENSGT00390000008964	ENSGT01030000234629.E.a.b.d	ENSGT00550000074873.ob.a.a.b.a
Chinook salmon	MODERN SPECIES		PPP4C (ENSOTSG00005034843)	ENSOTSG00005034844	tspan4b (ENSOTSG00005034847)	rcn3 (ENSOTSG00005034850) ##14	nosip (ENSOTSG00005034852) #15	trpm4a (ENSOTSG00005034855)	trpm4a (ENSOTSG00005034856)	ENSOTSG00005034857 #19	ENSOTSG00005000223	PRR12 (ENSOTSG00005000266) #17	prrg2 (ENSOTSG00005000311)	rras (ENSOTSG00005000315) #18	ENSOTSG00005000320	ENSOTSG00005000323	AP2A1 (ENSOTSG00005000335) #25	prmt1 (ENSOTSG00005000386) #22	ENSOTSG00005006150	ENSOTSG00005006151	ENSOTSG00005006152	ENSOTSG00005006153	rabep2 (ENSOTSG00005006154)	ENSOTSG00005006162	ENSOTSG00005006163	nudt9 (ENSOTSG00005006165)	mapk3 (ENSOTSG00005006178)	gdpd3a (ENSOTSG00005007372)	ypel3 (ENSOTSG00005007374)	ENSOTSG00005007375	ENSOTSG00005007377	ALDOA (ENSOTSG00005007379)	PPP4C (ENSOTSG00005007716)
Coho salmon	MODERN SPECIES	26	tspan4b (ENSOKIG00005031719)	ENSOKIG00005031703	pax10 (ENSOKIG00005031686)	nosip (ENSOKIG00005031656) #15	rcn3 (ENSOKIG00005031634) ##14	ENSOKIG00005031626	ENSOKIG00005031621	trpm4a (ENSOKIG00005031512)	ENSOKIG00005031480 #19	ENSOKIG00005031203	ENSOKIG00005031150 #17	prrg2 (ENSOKIG00005031121)	rras (ENSOKIG00005031098) #18	ENSOKIG00005031078	AP2A1 (ENSOKIG00005030654) #25	prmt1 (ENSOKIG00005027306) #22	ENSOKIG00005027124	ENSOKIG00005027113	ENSOKIG00005027084	lin7b (ENSOKIG00005026987)	ENSOKIG00005026943	ENSOKIG00005026931	parp14rs1 (ENSOKIG00005026786)	natd1 (ENSOKIG00005026764)	tmem11 (ENSOKIG00005026756)	dhrs7b (ENSOKIG00005026739)	CRAMP1 (ENSOKIG00005026710)	jpt2 (ENSOKIG00005026684)	mapk8ip3 (ENSOKIG00005026395)	nme3 (ENSOKIG00005026313)	mrps34 (ENSOKIG00005026293)
Rainbow trout	MODERN SPECIES	3	rcn3 (ENSOMYG00000016807) ##14	nosip (ENSOMYG00000016738) #15	trpm4a (ENSOMYG00000016667)	ENSOMYG00000050375	trpm4a (ENSOMYG00000016478)	ENSOMYG00000070569	ENSOMYG00000073247 #19	ENSOMYG00000016361	ENSOMYG00000016334 #17	ENSOMYG00000016325 #17	prrg2 (ENSOMYG00000016315)	rras (ENSOMYG00000075383) #18	ENSOMYG00000027569	ENSOMYG00000076201	ENSOMYG00000026079 #25	prmt1 (ENSOMYG00000051801) #22	ENSOMYG00000023784	ENSOMYG00000023614	ENSOMYG00000023495	ENSOMYG00000053305	ENSOMYG00000023479	ENSOMYG00000023318	ENSOMYG00000023135	tmem11 (ENSOMYG00000060635)	ENSOMYG00000023118	ENSOMYG00000023101	jpt2 (ENSOMYG00000023087)	mapk8ip3 (ENSOMYG00000019947)	nme3 (ENSOMYG00000019726)	mrps34 (ENSOMYG00000019712)	spsb3a (ENSOMYG00000019705)
Huchen	MODERN SPECIES	666				pax10 (ENSHHUG00000018827)	rcn3 (ENSHHUG00000018780) ##14	nosip (ENSHHUG00000018762) #15	ENSHHUG00000018755	trpm4a (ENSHHUG00000018702)	ENSHHUG00000018686 #19	ENSHHUG00000018598	PRR12 (ENSHHUG00000018541) #17	prrg2 (ENSHHUG00000018527)	rras (ENSHHUG00000018521) #18	ENSHHUG00000018515	AP2A1 (ENSHHUG00000018395) #25	prmt1 (ENSHHUG00000018309) #22	lin7b (ENSHHUG00000018278)	ENSHHUG00000018226	ENSHHUG00000018206
Salmoninae	ANCESTRAL SPECIES	409				ENSGT00940000165851.e	ENSGT00940000154318.B	ENSGT00940000155391.b.q.a	ENSGT01010000222360.D.a.h ##14	ENSGT00390000015505 #15	ENSGT00730000111459	ENSGT00950000183205.b.a.b.a.a.m #19	ENSGT00440000037417.B.a.e.a #17	ENSGT00940000158268.b.a	ENSGT00940000160972.a #18	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b #25	ENSGT00940000154700.f #22	ENSGT00940000180096	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b	ENSGT00390000007652.c	ENSGT00940000153496.a.a.r.a	ENSGT00940000153496.a.a.r.b.a	ENSGT01030000234629.E.a.b.c	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	120	ENSGT00970000197626	ENSGT00940000167070.b	ENSGT00390000015278.l	ENSGT00940000166574.e	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00930000151040.b.a	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a ##14	ENSGT00950000183205.b.a.b.a.a.m.a #19	ENSGT00440000037417.B.a.e.a #17	ENSGT00940000158268.b.a	ENSGT00940000160972.a #18	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b #25	ENSGT00940000154700.f #22	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b	ENSGT00390000007652.c	ENSGT00940000153496.a.a.r.a	ENSGT00940000153496.a.a.r.b.a	ENSGT01030000234629.E.a.b.c	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000160759.d	ENSGT00940000161514.a	ENSGT00940000161127	ENSGT00940000166574.e	ENSGT00940000159512.f	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00930000151040.b.a	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a #19	ENSGT00440000037417.B.a.e.a #17	ENSGT00940000158268.b.a	ENSGT00940000160972.a #18	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b #25	ENSGT00940000154700.f #22	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b	ENSGT00390000007652.c	ENSGT00940000153496.a.a.r.b.a	ENSGT01030000234629.E.a.b.c	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000161514.a	ENSGT00940000161127	ENSGT00940000166574.e	ENSGT00940000159512.f	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00930000151040.b.a	ENSGT00970000197626	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT00950000183205.b.a.b.a.a.m.a #19	ENSGT00440000037417.B.a.e.a #17	ENSGT00940000158268.b.a	ENSGT00940000160972.a #18	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b #25	ENSGT00940000154700.f #22	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000158837.g.b.b	ENSGT00390000006617.f	ENSGT00390000003337.f.b	ENSGT00390000007652.c	ENSGT00940000153496.a.a.r.b.a	ENSGT01030000234629.E.a.b.c	ENSGT00550000074873.ob.a.a.b.b	ENSGT00940000160492.f	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00390000008812.b.b.b.b
Coho salmon	MODERN SPECIES	1	ENSOKIG00005025163	ENSOKIG00005025205	KAT8 (ENSOKIG00005025304)	ALDOA (ENSOKIG00005025885)	PPP4C (ENSOKIG00005025908)	ENSOKIG00005025926	ENSOKIG00005025936	ENSOKIG00005025951	ENSOKIG00005025977 #19	PRR12 (ENSOKIG00005026008) #17	prrg2 (ENSOKIG00005026133)	ENSOKIG00005026144	rras (ENSOKIG00005026149) #18	ENSOKIG00005026159	AP2A1 (ENSOKIG00005026192) #25	prmt1 (ENSOKIG00005026770) #22	ENSOKIG00005029316	ENSOKIG00005029333	ENSOKIG00005029359	tmem11 (ENSOKIG00005029724)	CRAMP1 (ENSOKIG00005029739)	jpt2 (ENSOKIG00005029781)	ENSOKIG00005029815	mapk8ip3 (ENSOKIG00005029868)	SPSB3 (ENSOKIG00005030546)	SEZ6L2 (ENSOKIG00005030576)	ENSOKIG00005030686	ENSOKIG00005030742	DLX3 (ENSOKIG00005030773)	PSMD11 (ENSOKIG00005030783)	CDK5R1 (ENSOKIG00005030823)
Chinook salmon	MODERN SPECIES		ypel3 (ENSOTSG00005007374)	ENSOTSG00005007375	ENSOTSG00005007377	ALDOA (ENSOTSG00005007379)	PPP4C (ENSOTSG00005007716)	ENSOTSG00005007719	tspan4b (ENSOTSG00005007721)	pax10 (ENSOTSG00005007722)	ENSOTSG00005007724	ENSOTSG00005007726 #19	PRR12 (ENSOTSG00005007728) #17	prrg2 (ENSOTSG00005007797)	rras (ENSOTSG00005007799) #18	ENSOTSG00005007801	AP2A1 (ENSOTSG00005007807) #25	prmt1 (ENSOTSG00005008317) #22	ENSOTSG00005009346	ENSOTSG00005009356	ENSOTSG00005009357	tmem11 (ENSOTSG00005009371)	CRAMP1 (ENSOTSG00005009373)	mapk8ip3 (ENSOTSG00005009375)	spsb3a (ENSOTSG00005009412)	ATP6V0C (ENSOTSG00005009413)	SEZ6L2 (ENSOTSG00005009418)	ENSOTSG00005009594	dlx4a (ENSOTSG00005009595)	DLX3 (ENSOTSG00005009596)	PSMD11 (ENSOTSG00005009598)	cdk5r1a (ENSOTSG00005009599)	nsfa (ENSOTSG00005009601)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000046063	ENSOMYG00000046091	ENSOMYG00000052713	ENSOMYG00000046145	ENSOMYG00000046168	ENSOMYG00000046180	ENSOMYG00000046188	ENSOMYG00000050339 #19	ENSOMYG00000046206	ENSOMYG00000069771	ENSOMYG00000062437 #17	tmg2 (ENSOMYG00000046212)	rras (ENSOMYG00000050105) #18	ENSOMYG00000046218	ENSOMYG00000046268 #25	prmt1 (ENSOMYG00000024072) #22	ENSOMYG00000046415	ENSOMYG00000071171	ENSOMYG00000074210	ENSOMYG00000046426	ENSOMYG00000046434	tmem11 (ENSOMYG00000046436)	ENSOMYG00000046444	jpt2 (ENSOMYG00000046462)	mapk8ip3 (ENSOMYG00000046505)	ENSOMYG00000057237	ENSOMYG00000046560	ENSOMYG00000046565	ENSOMYG00000046626	ENSOMYG00000046695	ENSOMYG00000046697
Salmo	ANCESTRAL SPECIES	64	ENSGT00390000015278.l	ENSGT00940000166574.e	ENSGT00390000001557.h	ENSGT00940000159512.e.a.b	ENSGT00950000182987.c.a.a.lb.e.a	ENSGT00930000151040.b.a	ENSGT00940000165851.f	ENSGT00940000155391.b.q.b	ENSGT01010000222360.D.a.g.a ##14	ENSGT00950000183205.b.a.b.a.a.m.a #19	ENSGT00440000037417.B.a.e.a #17	ENSGT00940000158268.b.a	ENSGT00940000160972.a #18	ENSGT00940000167194.b	ENSGT00950000182838.A.a.a.k.b #25	ENSGT00940000154700.f #22	ENSGT00940000180096.a	ENSGT01030000234586.A.a.a.b.h	ENSGT00390000006617.f	ENSGT00390000003337.f.b	ENSGT00390000007652.c	ENSGT00940000153496.a.a.r.a	ENSGT01030000234629.E.a.b.c	ENSGT00550000074873.ob.a.a.b.b	ENSGT00390000002810.l	ENSGT00950000183143.c.b.m	ENSGT00940000160492.f	ENSGT00940000159252.b.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000165079.b.b	ENSGT00940000158951.f.c
River trout	MODERN SPECIES	33	rnf25 (ENSSTUG00000032563)	ENSSTUG00000032561	kat8 (ENSSTUG00000031761)	ALDOA (ENSSTUG00000031661)	PPP4C (ENSSTUG00000031613)	tspan4b (ENSSTUG00000031578)	pax10 (ENSSTUG00000031563)	rcn3 (ENSSTUG00000031504) ##14	ENSSTUG00000031441 #19	PRR12 (ENSSTUG00000031372) #17	prrg2 (ENSSTUG00000031352)	ENSSTUG00000031349	rras (ENSSTUG00000031339) #18	ENSSTUG00000031326	AP2A1 (ENSSTUG00000030784) #25	prmt1 (ENSSTUG00000029625) #22	ENSSTUG00000029588	ENSSTUG00000029582	tmem11 (ENSSTUG00000029578)	CRAMP1 (ENSSTUG00000029545)	jpt2 (ENSSTUG00000029523)	mapk8ip3 (ENSSTUG00000029202)	spsb3a (ENSSTUG00000029182)	ATP6V0C (ENSSTUG00000029160)	ENSSTUG00000029153	xpo6 (ENSSTUG00000027955)	kctd13 (ENSSTUG00000027924)	SEZ6L2 (ENSSTUG00000027824)	ENSSTUG00000027813	ENSSTUG00000027796	ENSSTUG00000027742
Atlantic salmon	MODERN SPECIES	15	ENSSSAG00000087917	rnf25 (ENSSSAG00000072594)	kat8 (ENSSSAG00000072454)	ALDOA (ENSSSAG00000072436)	ENSSSAG00000118112	ENSSSAG00000082459	pax10 (ENSSSAG00000099454)	rcn3 (ENSSSAG00000072371) ##14	ENSSSAG00000100366	ENSSSAG00000102493 #19	ENSSSAG00000072339 #17	prrg2 (ENSSSAG00000072333)	rras (ENSSSAG00000072324) #18	ENSSSAG00000072315	ENSSSAG00000001001 #25	prmt1 (ENSSSAG00000061870) #22	ENSSSAG00000097370	ENSSSAG00000095953	ENSSSAG00000105245	tmem11 (ENSSSAG00000000270)	ENSSSAG00000061415	jpt2 (ENSSSAG00000095240)	mapk8ip3 (ENSSSAG00000053437)	ENSSSAG00000114586	ENSSSAG00000095306	ENSSSAG00000106267	ENSSSAG00000102969	ENSSSAG00000052647	ENSSSAG00000045889	ENSSSAG00000045730	HEBP2 (ENSSSAG00000045682)
Huchen	MODERN SPECIES	214							CLDN18 (ENSHHUG00000021797)	ENSHHUG00000009025	adgrl4 (ENSHHUG00000008649)	nosip (ENSHHUG00000008576) #15	ENSHHUG00000008567 #19	ENSHHUG00000008554 #17	ENSHHUG00000008537 #17	prrg2 (ENSHHUG00000008532)	rras (ENSHHUG00000008518) #18	prmt1 (ENSHHUG00000008176) #22	AP2A1 (ENSHHUG00000008000) #25	ENSHHUG00000007951	ENSHHUG00000007908	ENSHHUG00000007901	tmem11 (ENSHHUG00000007898)	CRAMP1 (ENSHHUG00000007867)	jpt2 (ENSHHUG00000007859)	ENSHHUG00000007772	spsb3a (ENSHHUG00000007739)	ATP6V0C (ENSHHUG00000007708)	ENSHHUG00000007666
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	10	ENSELUG00000006261	pax10 (ENSELUG00000029054)	rcn3 (ENSELUG00000029871) ##14	nosip (ENSELUG00000031072) #15	ENSELUG00000006046	ENSELUG00000006041	trpm4a (ENSELUG00000006106)	trpm4a (ENSELUG00000006005)	trpm4a (ENSELUG00000004871)	ENSELUG00000004916 #19	ENSELUG00000004937	PRR12 (ENSELUG00000004989) #17	prrg2 (ENSELUG00000005038)	rras (ENSELUG00000005079) #18	ENSELUG00000005091	prmt1 (ENSELUG00000027996) #22	AP2A1 (ENSELUG00000005335) #25	prmt1 (ENSELUG00000005407) #22	ENSELUG00000031103	ENSELUG00000031333	lin7b (ENSELUG00000005462)	ENSELUG00000005563	ENSELUG00000027172	ENSELUG00000025046	ENSELUG00000034636	ENSELUG00000009811	ENSELUG00000026231	parp14rs1 (ENSELUG00000009798)	ENSELUG00000009784	natd1 (ENSELUG00000009743)	tmem11 (ENSELUG00000009727)
Northern pike	MODERN SPECIES	10	rcn3 (ENSELUG00000029871) ##14	nosip (ENSELUG00000031072) #15	ENSELUG00000006046	ENSELUG00000006041	trpm4a (ENSELUG00000006106)	trpm4a (ENSELUG00000006005)	trpm4a (ENSELUG00000004871)	ENSELUG00000004916 #19	ENSELUG00000004937	PRR12 (ENSELUG00000004989) #17	prrg2 (ENSELUG00000005038)	rras (ENSELUG00000005079) #18	ENSELUG00000005091	prmt1 (ENSELUG00000027996) #22	AP2A1 (ENSELUG00000005335) #25	prmt1 (ENSELUG00000005407) #22	ENSELUG00000031103	ENSELUG00000031333	lin7b (ENSELUG00000005462)	ENSELUG00000005563	ENSELUG00000027172	ENSELUG00000025046	ENSELUG00000034636	ENSELUG00000009811	ENSELUG00000026231	parp14rs1 (ENSELUG00000009798)	ENSELUG00000009784	natd1 (ENSELUG00000009743)	tmem11 (ENSELUG00000009727)	dhrs7b (ENSELUG00000009719)	CRAMP1 (ENSELUG00000009700)
Acanthomorphata	ANCESTRAL SPECIES	223			ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00990000207765	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000153222.a.b.a	ENSGT00940000160292
Cod	MODERN SPECIES	11	CIITA (ENSGMOG00000026611)	ENSGMOG00000026541	ENSGMOG00000030792	nosip (ENSGMOG00000017163) #15	ENSGMOG00000022798	trpm4a (ENSGMOG00000024633)	ENSGMOG00000000191	ENSGMOG00000022627	ENSGMOG00000030602 #19	ENSGMOG00000004410	ENSGMOG00000030263 #17	prrg2 (ENSGMOG00000004472)	rras (ENSGMOG00000004491) #18	ENSGMOG00000004508	ENSGMOG00000004536 #25	prmt1 (ENSGMOG00000004576) #22	ENSGMOG00000026418	ENSGMOG00000034501	ENSGMOG00000036188	ENSGMOG00000012372 #23	pih1d1 (ENSGMOG00000001794) #8	tnnt1 (ENSGMOG00000007106)	syt5a (ENSGMOG00000007117)	fthl31 (ENSGMOG00000003353)	aldh16a1 (ENSGMOG00000003317) #9	ENSGMOG00000003275	ENSGMOG00000027393	ENSGMOG00000036987	ENSGMOG00000035774	ENSGMOG00000035298	ENSGMOG00000000870
Euacanthomorphacea	ANCESTRAL SPECIES	126											ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00390000015505 #15	ENSGT01010000222360.D.a ##14	ENSGT00940000154318.B	ENSGT00940000165851
Percomorphaceae	ANCESTRAL SPECIES	115					ENSGT00940000165851	ENSGT00940000154318.B	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920
Tiger tail seahorse	MODERN SPECIES	338			ACSF2 (ENSHCOG00000011078)	ndel1b (ENSHCOG00000011063)	RNF222 (ENSHCOG00000011039)	ARHGAP44 (ENSHCOG00000011019)	pmp22a (ENSHCOG00000010985)	cdc42ep4a (ENSHCOG00000010980)	SDK2 (ENSHCOG00000010972)	ENSHCOG00000010915	ttyh2l (ENSHCOG00000010903)	PRR12 (ENSHCOG00000010868) #17	prrg2 (ENSHCOG00000010834)	rras (ENSHCOG00000010826) #18	AP2A1 (ENSHCOG00000010822) #25	prmt1 (ENSHCOG00000010782) #22	trpm4a (ENSHCOG00000010735)	ENSHCOG00000010593	RARA (ENSHCOG00000010577)	ENSHCOG00000010537	ENSHCOG00000010519	cyb561 (ENSHCOG00000010499)	HDAC5 (ENSHCOG00000010467)	pex12 (ENSHCOG00000010407)	ENSHCOG00000010355	hao1 (ENSHCOG00000010339)	lin7b (ENSHCOG00000010299)	snrnp70 (ENSHCOG00000010270)	ENSHCOG00000010253 #19	ABCC1 (ENSHCOG00000010243)	fbxl16 (ENSHCOG00000010182)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Eupercaria	ANCESTRAL SPECIES	30			ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00390000016298.a	ENSGT00940000157552.s.b	ENSGT00940000160315	ENSGT00940000177903	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00940000158310	ENSGT00940000159138	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000157145
Tetraodon	MODERN SPECIES	18	ENSTNIG00000004253	rab3db (ENSTNIG00000005293)	ENSTNIG00000001791	ENSTNIG00000001720	ENSTNIG00000002611	ENSTNIG00000019672	FBXL16 (ENSTNIG00000014189)	ENSTNIG00000014188	hao1 (ENSTNIG00000014187)	ENSTNIG00000014186	snrnp70 (ENSTNIG00000004043)	lin7b (ENSTNIG00000004042)	ENSTNIG00000003030 #19	ENSTNIG00000003029	AP2A1 (ENSTNIG00000003549) #25	prmt1 (ENSTNIG00000003320) #22	ENSTNIG00000005013	ENSTNIG00000000088	ENSTNIG00000003739	ENSTNIG00000001090	ENSTNIG00000004063	NACC1 (ENSTNIG00000012622)	ENSTNIG00000012623	CACNA1A (ENSTNIG00000012624)	alkbh7 (ENSTNIG00000012625)	gtf2f1 (ENSTNIG00000012626)	ENSTNIG00000012627	ELFN2 (ENSTNIG00000012628)	sgsm3 (ENSTNIG00000012629)	gtpbp1 (ENSTNIG00000012630)	lgals2a (ENSTNIG00000012631)
Fugu	MODERN SPECIES	20														rras (ENSTRUG00000028056) #18	AP2A1 (ENSTRUG00000011950) #25	prmt1 (ENSTRUG00000012105) #22	ENSTRUG00000012114	tspan4b (ENSTRUG00000031022)	ENSTRUG00000032952	ENSTRUG00000022121	ENSTRUG00000010961	farsa (ENSTRUG00000010624)	abat (ENSTRUG00000010349)	ENSTRUG00000033378	unc50 (ENSTRUG00000031070)	ENSTRUG00000030138	CNN1 (ENSTRUG00000009995)	tlcd4b (ENSTRUG00000009912)	ENSTRUG00000024195	nosip (ENSTRUG00000009769) #15	rcn3 (ENSTRUG00000009547) ##14
Eupecaria_A	ANCESTRAL SPECIES	29			ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT01090000260003.a.b.b.a.b	ENSGT00950000183098.a.a	ENSGT00950000183207.b	ENSGT00940000165190.B	ENSGT00950000183150.a.a.a.d	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b
Eupecaria_B	ANCESTRAL SPECIES	35			ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Eupecaria_C	ANCESTRAL SPECIES	17			ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310	ENSGT00940000160685	ENSGT00940000156395.f	ENSGT00950000182987.c.a.a.mb	ENSGT00510000046608.A
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26			ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310	ENSGT00940000160685	ENSGT00940000156395.f	ENSGT00950000182987.c.a.a.mb	ENSGT00510000046608.A
European seabass	MODERN SPECIES	21	ENSDLAG00005031717	ENSDLAG00005031425	ENSDLAG00005003611	ENSDLAG00005004231 ##14	ENSDLAG00005004370 #15	ENSDLAG00005031193	ENSDLAG00005034088	ENSDLAG00005004521	ENSDLAG00005004571	ENSDLAG00005004637 #17	prrg2 (ENSDLAG00005004800)	rras (ENSDLAG00005028005) #18	ENSDLAG00005004844	ENSDLAG00005026800	ENSDLAG00005004882 #25	prmt1 (ENSDLAG00005006017) #22	ENSDLAG00005006970	ENSDLAG00005007087	ENSDLAG00005007135	ENSDLAG00005005738 #19	ENSDLAG00005005690	ENSDLAG00005005566	ENSDLAG00005007983	ENSDLAG00005008279	fbxl16 (ENSDLAG00005031027)	ENSDLAG00005030359	ENSDLAG00005021911	ENSDLAG00005030242	rbfox1 (ENSDLAG00005009049)	ENSDLAG00005009181	ENSDLAG00005010728
Large yellow croaker	MODERN SPECIES	483	natd1 (ENSLCRG00005014421)	tmem11 (ENSLCRG00005014419)	dhrs7b (ENSLCRG00005014417)	CRAMP1 (ENSLCRG00005014413)	mapk8ip3 (ENSLCRG00005009280)	nme3 (ENSLCRG00005009225)	tspan4b (ENSLCRG00005009221)	ENSLCRG00005009218	ENSLCRG00005009207	jpt2 (ENSLCRG00005009205)	PRR12 (ENSLCRG00005009202) #17	prrg2 (ENSLCRG00005009199)	rras (ENSLCRG00005009191) #18	ENSLCRG00005009189	AP2A1 (ENSLCRG00005009075) #25	prmt1 (ENSLCRG00005008428) #22	rab18b (ENSLCRG00005008411)	ENSLCRG00005008407	ENSLCRG00005007492	ENSLCRG00005007486	ENSLCRG00005007483	ENSLCRG00005007472	tfr1a (ENSLCRG00005007461)	ints15 (ENSLCRG00005007459)	rgs11 (ENSLCRG00005006914)	pgap6 (ENSLCRG00005006909)	ENSLCRG00005006907	PLPP3 (ENSLCRG00005006905)	si:ch211-188c16.1 (ENSLCRG00005006904)	C8A (ENSLCRG00005006888)	c8b (ENSLCRG00005006879)
Gilthead seabream	MODERN SPECIES	16		lin7b (ENSSAUG00010009625)	ENSSAUG00010009642	hao1 (ENSSAUG00010009644)	smg1 (ENSSAUG00010009686)	fbxl16 (ENSSAUG00010011181)	ENSSAUG00010011201	ENSSAUG00010011742	ENSSAUG00010011747	ENSSAUG00010011752 #19	ABCC1 (ENSSAUG00010011993)	ENSSAUG00010024049	ENSSAUG00010024050	ENSSAUG00010024051	trpm4a (ENSSAUG00010024055)	prmt1 (ENSSAUG00010024070) #22	AP2A1 (ENSSAUG00010024768) #25	ENSSAUG00010024774	rras (ENSSAUG00010024775) #18	cd99 (ENSSAUG00010024776)	gyg2 (ENSSAUG00010024778)	MXRA5 (ENSSAUG00010024780)	PRKX (ENSSAUG00010024781)	ENSSAUG00010024789	ENSSAUG00010024790	ENSSAUG00010024791	ENSSAUG00010024795	ENSSAUG00010024799	ENSSAUG00010024832	ENSSAUG00010024834	ENSSAUG00010024835
Perciformes	ANCESTRAL SPECIES	1	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a
Cottioidei	ANCESTRAL SPECIES	51	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000165851.d.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000160643.i	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00390000003628.a.b	ENSGT00940000166711	ENSGT00390000004690.a.a	ENSGT00940000155223.a.a	ENSGT01030000234606.a.b.i.a	ENSGT01030000234606.a.b.i.b
Lumpfish	MODERN SPECIES	23	CBX1 (ENSCLMG00005020426)	nfe2l1a (ENSCLMG00005020425)	praf2 (ENSCLMG00005020419)	copz2 (ENSCLMG00005020417)	prr15la (ENSCLMG00005020414)	ENSCLMG00005020412	ENSCLMG00005020411	pdk2b (ENSCLMG00005020254)	kcnc3a (ENSCLMG00005020226)	tspan4b (ENSCLMG00005020224)	PRR12 (ENSCLMG00005020223) #17	prrg2 (ENSCLMG00005020221)	rras (ENSCLMG00005020220) #18	ENSCLMG00005020219	AP2A1 (ENSCLMG00005020070) #25	prmt1 (ENSCLMG00005019982) #22	ENSCLMG00005019976	ENSCLMG00005019968	ABCC1 (ENSCLMG00005015961)	ENSCLMG00005015936 #19	snrnp70 (ENSCLMG00005015934)	lin7b (ENSCLMG00005015927)	pyya (ENSCLMG00005015925)	mpp2a (ENSCLMG00005015795)	ENSCLMG00005015783	ENSCLMG00005015778	MPP2 (ENSCLMG00005015205)	ENSCLMG00005015194	smarce1 (ENSCLMG00005015178)	ENSCLMG00005015176	rpl23 (ENSCLMG00005015080)
Stickleback	MODERN SPECIES	10	SLC16A6 (ENSGACG00000004552)	wipi1 (ENSGACG00000004567)	zgc:86896 (ENSGACG00000004610)	prkar1aa (ENSGACG00000004634)	mettl22 (ENSGACG00000004684)	abat (ENSGACG00000004710)	rcn3 (ENSGACG00000004729) ##14	nosip (ENSGACG00000004781) #15	ENSGACG00000004798	tspan4b (ENSGACG00000004802)	PRR12 (ENSGACG00000004828) #17	prrg2 (ENSGACG00000004841)	rras (ENSGACG00000004844) #18	ENSGACG00000004854	AP2A1 (ENSGACG00000004857) #25	prmt1 (ENSGACG00000004897) #22	trpm4a (ENSGACG00000004950)	hao1 (ENSGACG00000004960)	smg1 (ENSGACG00000004970)	GADD45GIP1 (ENSGACG00000005000)	zgc:158403 (ENSGACG00000005008)	rpain (ENSGACG00000005060)	PSMD11 (ENSGACG00000005084)	DLX3 (ENSGACG00000005117)	dlx4a (ENSGACG00000005120)	ENSGACG00000005125	nags (ENSGACG00000005126)	ENSGACG00000005130	ENSGACG00000005131	ENSGACG00000005138	ENSGACG00000005139
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00940000155575.i.b	ENSGT00940000156833.b	ENSGT00950000183183.a	ENSGT00940000155148.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851.d.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00940000160292	ENSGT00940000153222.a.b.a
Channel bull blenny	MODERN SPECIES	22	prkar1aa (ENSCGOG00000010004)	mettl22 (ENSCGOG00000010650)	ENSCGOG00000010658	ENSCGOG00000010661	abat (ENSCGOG00000010690)	ENSCGOG00000011656	rcn3 (ENSCGOG00000011658) ##14	nosip (ENSCGOG00000011765) #15	ENSCGOG00000011807 #15	ENSCGOG00000011809	tspan4b (ENSCGOG00000011810)	PRR12 (ENSCGOG00000011815) #17	rras (ENSCGOG00000011818) #18	ENSCGOG00000011831	AP2A1 (ENSCGOG00000011859) #25	prmt1 (ENSCGOG00000012617) #22	trpm4a (ENSCGOG00000013896)	ENSCGOG00000013905	ENSCGOG00000013906
Pike perch	MODERN SPECIES	91	ENSSLUG00000024641	DLX3 (ENSSLUG00000024647)	PSMD11 (ENSSLUG00000024664)	rpain (ENSSLUG00000024671)	abat (ENSSLUG00000024683)	mettl22 (ENSSLUG00000024740)	rcn3 (ENSSLUG00000012922) ##14	nosip (ENSSLUG00000012932) #15	ENSSLUG00000012937	tspan4b (ENSSLUG00000012941)	PRR12 (ENSSLUG00000012950) #17	prrg2 (ENSSLUG00000012955)	rras (ENSSLUG00000012961) #18	ENSSLUG00000012971	AP2A1 (ENSSLUG00000012995) #25	prmt1 (ENSSLUG00000013226) #22	ENSSLUG00000017171	ABCC1 (ENSSLUG00000017340)	ENSSLUG00000019281	snrnp70 (ENSSLUG00000019283)	lin7b (ENSSLUG00000019302)	ALDOA (ENSSLUG00000019383)	gps1 (ENSSLUG00000019396)	slc25a23b (ENSSLUG00000019445)	pdxdc1 (ENSSLUG00000019483)	gspt1l (ENSSLUG00000019943)	ENSSLUG00000020210	ENSSLUG00000020216	RRN3 (ENSSLUG00000020231)	ppl (ENSSLUG00000020495)	glyr1 (ENSSLUG00000021077)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	338	JUP (ENSLBEG00000003603)	ENSLBEG00000003578	gps1 (ENSLBEG00000003537)	slc25a23b (ENSLBEG00000003454)	mettl22 (ENSLBEG00000003412)	abat (ENSLBEG00000003331)	rcn3 (ENSLBEG00000003301) ##14	nosip (ENSLBEG00000003263) #15	ENSLBEG00000003246	tspan4b (ENSLBEG00000003233)	PRR12 (ENSLBEG00000003203) #17	prrg2 (ENSLBEG00000003188)	rras (ENSLBEG00000003132) #18	ENSLBEG00000003112	AP2A1 (ENSLBEG00000003059) #25	prmt1 (ENSLBEG00000003017) #22	trpm4a (ENSLBEG00000002911)	ENSLBEG00000002875
Ballan wrasse	MODERN SPECIES	2315															AP2A1 (ENSLBEG00000021680) #25	prmt1 (ENSLBEG00000021711) #22
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Carangaria_A	ANCESTRAL SPECIES	83	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Barramundi perch	MODERN SPECIES	222	smg1 (ENSLCAG00010014104)	hao1 (ENSLCAG00010014381)	mettl22 (ENSLCAG00010014394)	abat (ENSLCAG00010014427)	rcn3 (ENSLCAG00010014539) ##14	nosip (ENSLCAG00010014549) #15	ENSLCAG00010014557	tspan4b (ENSLCAG00010014563)	ENSLCAG00010014566	ENSLCAG00010014569	PRR12 (ENSLCAG00010014576) #17	prrg2 (ENSLCAG00010014583)	rras (ENSLCAG00010014589) #18	ENSLCAG00010014592	AP2A1 (ENSLCAG00010014619) #25	prmt1 (ENSLCAG00010014748) #22	trpm4a (ENSLCAG00010014804)	ENSLCAG00010014818	ENSLCAG00010014983 #19	snrnp70 (ENSLCAG00010014991)	lin7b (ENSLCAG00010015009)	ENSLCAG00010015033	ENSLCAG00010015042	timm29 (ENSLCAG00010015059)	yipf2 (ENSLCAG00010015062)	ENSLCAG00010015074	carm1 (ENSLCAG00010015078)	si:dkey-204f11.64 (ENSLCAG00010015083)	clpp (ENSLCAG00010015090)	aldh3b1 (ENSLCAG00010015097)	ppp4cb (ENSLCAG00010015115)
Seriola	ANCESTRAL SPECIES	127	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671
Greater amberjack	MODERN SPECIES	76	ENSSDUG00000018356	fbxl16 (ENSSDUG00000018337)	smg1 (ENSSDUG00000018232)	hao1 (ENSSDUG00000018213)	mettl22 (ENSSDUG00000018196)	abat (ENSSDUG00000018168)	rcn3 (ENSSDUG00000018141) ##14	nosip (ENSSDUG00000018112) #15	tspan4b (ENSSDUG00000018082)	ENSSDUG00000018061	PRR12 (ENSSDUG00000018037) #17	prrg2 (ENSSDUG00000018017)	rras (ENSSDUG00000018001) #18	ENSSDUG00000017987	AP2A1 (ENSSDUG00000017881) #25	prmt1 (ENSSDUG00000017846) #22	trpm4a (ENSSDUG00000017797)	ENSSDUG00000017785	ABCC1 (ENSSDUG00000017679)	ENSSDUG00000017620 #19	snrnp70 (ENSSDUG00000017591)	lin7b (ENSSDUG00000017570)	ENSSDUG00000017552	ube2z (ENSSDUG00000017511)	atp5mc1 (ENSSDUG00000017504)	eve1 (ENSSDUG00000017491)	hoxb13a (ENSSDUG00000017483)	hoxb9a (ENSSDUG00000017464)	hoxb8a (ENSSDUG00000017453)	hoxb7a (ENSSDUG00000017450)	ENSSDUG00000017386
Yellowtail amberjack	MODERN SPECIES	2755						nosip (ENSSLDG00000010576) #15	ENSSLDG00000010540	tspan4b (ENSSLDG00000010506)	ENSSLDG00000010454	ENSSLDG00000010294	PRR12 (ENSSLDG00000010105) #17	ENSSLDG00000010066	rras (ENSSLDG00000010044) #18	ENSSLDG00000010027	AP2A1 (ENSSLDG00000009925) #25	prmt1 (ENSSLDG00000009876) #22	trpm4a (ENSSLDG00000009675)	ENSSLDG00000009623	ABCC1 (ENSSLDG00000009530)	ENSSLDG00000009507 #19	snrnp70 (ENSSLDG00000009459)	ENSSLDG00000009430	lin7b (ENSSLDG00000009410)	ENSSLDG00000009387
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000158310	ENSGT00940000159138	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000167671	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00940000155582.q.a	ENSGT00940000162720.a.b.b	ENSGT00390000001488	ENSGT00940000164817	ENSGT00940000153578.B
Turbot	MODERN SPECIES	10	fbxl16 (ENSSMAG00000015368)	ENSSMAG00000015264	ENSSMAG00000015252	ENSSMAG00000015238	ENSSMAG00000015200	ENSSMAG00000015115	ENSSMAG00000015101 ##14	nosip (ENSSMAG00000015079) #15	ENSSMAG00000015065	ENSSMAG00000015038	ENSSMAG00000015019 #17	prrg2 (ENSSMAG00000015003)	rras (ENSSMAG00000025439) #18	ENSSMAG00000022735	ENSSMAG00000014919 #25	prmt1 (ENSSMAG00000014871) #22	ENSSMAG00000013882	ENSSMAG00000033114 #19	ENSSMAG00000013978	ENSSMAG00000014012	ENSSMAG00000014029	ENSSMAG00000014085	ENSSMAG00000014103	ENSSMAG00000014116	ENSSMAG00000014122	ENSSMAG00000034966	ENSSMAG00000037115	ENSSMAG00000024659	ENSSMAG00000025727	ENSSMAG00000033016	ENSSMAG00000014155
Tongue sole	MODERN SPECIES	8	si:ch73-366l1.5 (ENSCSEG00000010765)	ENSCSEG00000010769	stx1b (ENSCSEG00000010796)	ENSCSEG00000010969	si:dkeyp-113d7.1 (ENSCSEG00000010980)	krtt1c19e (ENSCSEG00000010996)	ENSCSEG00000011122	ENSCSEG00000011331	CUL3 (ENSCSEG00000011489)	SEPTIN12 (ENSCSEG00000011498)	fbxl16 (ENSCSEG00000011509)	smg1 (ENSCSEG00000011525)	hao1 (ENSCSEG00000011590)	mettl22 (ENSCSEG00000011596)	abat (ENSCSEG00000011618)	prmt1 (ENSCSEG00000011717) #22	trpm4a (ENSCSEG00000011769)	ENSCSEG00000011798	AP2A1 (ENSCSEG00000011803) #25	ENSCSEG00000011815	rras (ENSCSEG00000011820) #18	prrg2 (ENSCSEG00000011825)	PRR12 (ENSCSEG00000011832) #17	ENSCSEG00000011849	tspan4b (ENSCSEG00000011856)	ENSCSEG00000011873	nosip (ENSCSEG00000011876) #15	rcn3 (ENSCSEG00000011889) ##14	ABCC1 (ENSCSEG00000011899)	ENSCSEG00000011954 #19	snrnp70 (ENSCSEG00000011978)
Anabantaria	ANCESTRAL SPECIES	35	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000003356	ENSMAMG00000003519	ENSMAMG00000003547	ENSMAMG00000003858	ENSMAMG00000026663 ##14	ENSMAMG00000024681	ENSMAMG00000003928 #15	ENSMAMG00000003993	ENSMAMG00000004009	ENSMAMG00000004056 #17	prrg2 (ENSMAMG00000004089)	rras (ENSMAMG00000028141) #18	ENSMAMG00000004142	ENSMAMG00000004174 #25	ENSMAMG00000004289	prmt1 (ENSMAMG00000004321) #22	ENSMAMG00000004367	ENSMAMG00000004416	ENSMAMG00000004452	ENSMAMG00000005179	ENSMAMG00000004533 #19	ENSMAMG00000004556	ENSMAMG00000004576	ENSMAMG00000004646	ENSMAMG00000004663	ENSMAMG00000024619	ENSMAMG00000004689	ENSMAMG00000004709	ENSMAMG00000004724	ENSMAMG00000028690	ENSMAMG00000004777
Anabantoidei	ANCESTRAL SPECIES	25	ENSGT00940000159138	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000155223.a.a	ENSGT00940000160377	ENSGT01100000263525.a.b.a.b	ENSGT00390000005830	ENSGT00940000155904	ENSGT00930000151040.b	ENSGT00390000003249	ENSGT00940000163009.a	ENSGT01020000230389.a.a.a
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000008005	ENSBSLG00000007899	ENSBSLG00000007892	fbxl16 (ENSBSLG00000007885)	smg1 (ENSBSLG00000007483)	hao1 (ENSBSLG00000006753)	abat (ENSBSLG00000007070)	rcn3 (ENSBSLG00000006666) ##14	nosip (ENSBSLG00000006638) #15	ENSBSLG00000006565	tspan4b (ENSBSLG00000006525)	PRR12 (ENSBSLG00000006420) #17	prrg2 (ENSBSLG00000006358)	rras (ENSBSLG00000006319) #18	AP2A1 (ENSBSLG00000006107) #25	prmt1 (ENSBSLG00000005844) #22	trpm4a (ENSBSLG00000005000)	ENSBSLG00000004261	ABCC1 (ENSBSLG00000003936)	ENSBSLG00000003748 #19	ENSBSLG00000003734	lin7b (ENSBSLG00000003690)	ENSBSLG00000003117	carm1 (ENSBSLG00000002579)	si:ch211-286b5.5 (ENSBSLG00000002230)	clpp (ENSBSLG00000002211)	aldh3b1 (ENSBSLG00000002183)	ppp4cb (ENSBSLG00000002155)	cln3 (ENSBSLG00000002069)	ENSBSLG00000002068	dus1l (ENSBSLG00000002067)
Climbing perch	MODERN SPECIES	21	ENSATEG00000008098	ENSATEG00000008104	ENSATEG00000008121	ENSATEG00000008181	ENSATEG00000008190 ##14	ENSATEG00000008201 #15	ENSATEG00000008245	ENSATEG00000008261	ENSATEG00000008294	ENSATEG00000008339	ENSATEG00000008378 #17	prrg2 (ENSATEG00000008392)	rras (ENSATEG00000008400) #18	ENSATEG00000008428	ENSATEG00000008444 #25	prmt1 (ENSATEG00000008515) #22	ENSATEG00000008549	ENSATEG00000008575	ENSATEG00000008585	ENSATEG00000026638 #19	ENSATEG00000008748	ENSATEG00000008788	ENSATEG00000008832	carm1 (ENSATEG00000008974)	si:dkey-204f11.64 (ENSATEG00000027813)	clpp (ENSATEG00000009053)	aldh3b1 (ENSATEG00000009061)	ENSATEG00000009076	ENSATEG00000009102	ENSATEG00000009113	ENSATEG00000009121
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00940000171636	ENSGT00390000007164
Atherinomorphae	ANCESTRAL SPECIES	31	ENSGT00390000005830	ENSGT01100000263525.a.b.a.b	ENSGT00940000160377	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A
Cyprinodontiformes	ANCESTRAL SPECIES	28	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000159091	ENSGT00940000164903.b	ENSGT00950000183207.b	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00940000171636	ENSGT00390000007164
Cyprinodontoidei	ANCESTRAL SPECIES	37	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000159091	ENSGT00940000164903.b	ENSGT00950000183207.b.ab	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000165576.a.b	ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000164625.o.a
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000158354.c.b	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000159091	ENSGT00940000164903.b	ENSGT00950000183207.b.ab	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000164625.o.a	ENSGT00940000156584.e.b	ENSGT00510000046608.A	ENSGT00940000157439.a	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000183183.a	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000158354.c.b	ENSGT00940000165065.a	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00940000159091	ENSGT00940000164903.b	ENSGT00950000183207.b.ab	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000164625.o.a	ENSGT00940000156584.e.b	ENSGT00510000046608.A	ENSGT00940000157439.a	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000183183.a	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000160271	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160292
NAME_6	ANCESTRAL SPECIES	539																ENSGT00940000154700 #22	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000164625.o.a
Sailfin molly	MODERN SPECIES	2844																prmt1 (ENSPLAG00000003633) #22	pex12 (ENSPLAG00000003639)
Amazon molly	MODERN SPECIES	868													bsx (ENSPFOG00000009630)	hspa8 (ENSPFOG00000009543)	ENSPFOG00000009489	prmt1 (ENSPFOG00000009260) #22	pex12 (ENSPFOG00000009225)	ENSPFOG00000009190	ENSPFOG00000009166
Guppy	MODERN SPECIES	460	ABCC1 (ENSPREG00000005595)	ENSPREG00000005730	ENSPREG00000005748	trpm4a (ENSPREG00000005766)	zgc:86896 (ENSPREG00000005823)	cyb561 (ENSPREG00000005865)	HDAC5 (ENSPREG00000005884)	ENSPREG00000005951	gps1 (ENSPREG00000006074)	col1a1a (ENSPREG00000006150)	ENSPREG00000006208	OARD1 (ENSPREG00000006215)	ENSPREG00000006234	ENSPREG00000006248	AP2A1 (ENSPREG00000006262) #25	prmt1 (ENSPREG00000006311) #22	pex12 (ENSPREG00000006349)	rras (ENSPREG00000006363) #18	prrg2 (ENSPREG00000006381)	ENSPREG00000006415 #17	ENSPREG00000006456	ENSPREG00000006467	ENSPREG00000006487	aoc2 (ENSPREG00000006533)	kcnc3a (ENSPREG00000006583)	ube2z (ENSPREG00000006600)	eve1 (ENSPREG00000006631)	hoxb13a (ENSPREG00000006660)	hoxb9a (ENSPREG00000006716)	ENSPREG00000006728	hoxb8a (ENSPREG00000006767)
Platyfish	MODERN SPECIES	7	hoxb4a (ENSXMAG00000023849)	HOXB5 (ENSXMAG00000023952)	ENSXMAG00000002841	hoxb8a (ENSXMAG00000027358)	hoxb9a (ENSXMAG00000002838)	hoxb13a (ENSXMAG00000002835)	eve1 (ENSXMAG00000002833)	ube2z (ENSXMAG00000002829)	kcnc3a (ENSXMAG00000002823)	aoc2 (ENSXMAG00000002813)	ENSXMAG00000021756	PRR12 (ENSXMAG00000027073) #17	prrg2 (ENSXMAG00000002785)	rras (ENSXMAG00000025428) #18	AP2A1 (ENSXMAG00000002745) #25	prmt1 (ENSXMAG00000010853) #22	pex12 (ENSXMAG00000010849)	ENSXMAG00000010848	ENSXMAG00000022298	col1a1a (ENSXMAG00000016028)	gps1 (ENSXMAG00000017484)	ENSXMAG00000017472	HDAC5 (ENSXMAG00000017412)	cyb561 (ENSXMAG00000017402)	TANC2 (ENSXMAG00000017382)	zgc:86896 (ENSXMAG00000000643)	trpm4a (ENSXMAG00000017323)	ENSXMAG00000019947
NAME_4	ANCESTRAL SPECIES	200										ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a.f	ENSGT00940000165576.a.b	ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534	ENSGT00390000016209	ENSGT00940000155311.A.a	ENSGT00940000174909
Mummichog	MODERN SPECIES	337			pyya (ENSFHEG00000019959)	mpp2a (ENSFHEG00000019944)	ENSFHEG00000019891	smarce1 (ENSFHEG00000019413)	ENSFHEG00000019408	rpl23 (ENSFHEG00000019364)	ENSFHEG00000019348	ENSFHEG00000019285	ENSFHEG00000019256	PRR12 (ENSFHEG00000019222) #17	prrg2 (ENSFHEG00000019154)	rras (ENSFHEG00000019147) #18	AP2A1 (ENSFHEG00000019108) #25	prmt1 (ENSFHEG00000019062) #22	ENSFHEG00000000910
Sheepshead minnow	MODERN SPECIES	1066															ENSCVAG00000003842	prmt1 (ENSCVAG00000003859) #22	ENSCVAG00000003867	LIN7B (ENSCVAG00000003895)	snrnp70 (ENSCVAG00000003912)	gna13a (ENSCVAG00000003937)	SLC16A6 (ENSCVAG00000003946)	wipi1 (ENSCVAG00000004226)	RRN3 (ENSCVAG00000004246)	hao1 (ENSCVAG00000004258)	ENSCVAG00000004273	ENSCVAG00000004298
Aplocheiloidei	ANCESTRAL SPECIES	88									ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00390000003628.a.b	ENSGT01100000263488.a.b.b	ENSGT00940000166711	ENSGT00390000004690.a.a	ENSGT01030000234606.a.b.i.a
Turquoise killifish	MODERN SPECIES	1625	HOXB3A (ENSNFUG00015023020)	hoxb2a (ENSNFUG00015023015)	hoxb1a (ENSNFUG00015023012)	ENSNFUG00015023010	PEX12 (ENSNFUG00015023008)	HDAC5 (ENSNFUG00015022977)	CYB561 (ENSNFUG00015022964)	ENSNFUG00015022872	ENSNFUG00015022855	ENSNFUG00015022851	PRR12 (ENSNFUG00015022844) #17	prrg2 (ENSNFUG00015022839)	RRAS (ENSNFUG00015022830) #18	Nfu_g_1_021902 (ENSNFUG00015022824)	AP2A1 (ENSNFUG00015022250) #25	prmt1 (ENSNFUG00015021721) #22	PPP1R35 (ENSNFUG00015021706)	LIN7B (ENSNFUG00015021700)	SNRNP70 (ENSNFUG00015021693)	ENSNFUG00015021690 #19	ABCC1 (ENSNFUG00015021600)	ENSNFUG00015021576	ENSNFUG00015021572	trpm4a (ENSNFUG00015021535)	ENSNFUG00015021527	zgc:86896 (ENSNFUG00015021520)	odc1 (ENSNFUG00015021510)	NOL10 (ENSNFUG00015021502)	ATP6V1C2 (ENSNFUG00015021489)	KCNF1 (ENSNFUG00015021483)	mocs1 (ENSNFUG00015021460)
Mangrove rivulus	MODERN SPECIES	484																prmt1 (ENSKMAG00000005519) #22	ENSKMAG00000005553	lin7b (ENSKMAG00000005577)	snrnp70 (ENSKMAG00000005608)	ENSKMAG00000005647 #19	ABCC1 (ENSKMAG00000005708)	ENSKMAG00000005781
Oryzias	ANCESTRAL SPECIES		ENSGT00940000154957.A	ENSGT00940000164729.a.a.d	ENSGT00440000033742.a.b.d	ENSGT00390000004832	ENSGT00940000156193	ENSGT00390000018512	ENSGT00910000147748	ENSGT00940000153536.a.b.b.a.b	ENSGT00940000158181.a	ENSGT00550000075089	ENSGT00940000163009.a	ENSGT01020000230389.a.a.a	ENSGT00390000003249	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00950000182838.A.a.a #25	ENSGT00940000167194	ENSGT00940000160972 #18	ENSGT00940000158268.b	ENSGT00440000037417.B.a #17	ENSGT00390000014700.b.a.b.b.a	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT00390000015505 #15	ENSGT01010000222360.D.a ##14
Oryzias_b	ANCESTRAL SPECIES	43	ENSGT00390000004405.b.f	ENSGT00940000154957.A	ENSGT00940000164729.a.a.d	ENSGT00440000033742.a.b.d	ENSGT00390000004832	ENSGT00940000156193	ENSGT00390000018512	ENSGT00910000147748	ENSGT00940000153536.a.b.b.a.b	ENSGT00940000158181.a	ENSGT00550000075089	ENSGT01020000230389.a.a.a	ENSGT00390000003249.g	ENSGT00940000158693.A	ENSGT00940000176920	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00950000182838.A.a.a #25	ENSGT00940000160972 #18	ENSGT00940000158268.b	ENSGT00440000037417.B.a #17	ENSGT00390000014700.b.a.b.b.a	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT00390000015505 #15	ENSGT01010000222360.D.a ##14	ENSGT00550000074885
Indian medaka	MODERN SPECIES	9	copz2 (ENSOMEG00000000304)	igf2bp1 (ENSOMEG00000012285)	ENSOMEG00000012319	rab11fip4a (ENSOMEG00000012355)	ENSOMEG00000012365	scpep1 (ENSOMEG00000012417)	engase (ENSOMEG00000000315)	ENSOMEG00000012463	csnk1db (ENSOMEG00000012505)	slc16a3b (ENSOMEG00000012546)	dus1l (ENSOMEG00000012607)	ENSOMEG00000012632	ENSOMEG00000012659	trpm4a (ENSOMEG00000012778)	ENSOMEG00000012807	prmt1 (ENSOMEG00000012874) #22	ENSOMEG00000012944	lin7b (ENSOMEG00000012976)	snrnp70 (ENSOMEG00000013002)	ENSOMEG00000013017 #19	ABCC1 (ENSOMEG00000013329)	ENSOMEG00000013437	ENSOMEG00000013454	AP2A1 (ENSOMEG00000013496) #25	rras (ENSOMEG00000000343) #18	prrg2 (ENSOMEG00000013543)	PRR12 (ENSOMEG00000013573) #17	ENSOMEG00000001037	tspan4b (ENSOMEG00000013676)	ENSOMEG00000013721	nosip (ENSOMEG00000013754) #15
Javanese ricefish	MODERN SPECIES	22	THRA (ENSOJAG00000016706)	dusp3b (ENSOJAG00000017234)	prl (ENSOJAG00000017242)	ENSOJAG00000017257	ENSOJAG00000017467 #23	pih1d1 (ENSOJAG00000019180) #8	tnnt1 (ENSOJAG00000019214)	ENSOJAG00000019282	ENSOJAG00000019307	ENSOJAG00000019331	dus1l (ENSOJAG00000019355)	ENSOJAG00000019444	cln3 (ENSOJAG00000019459)	trpm4a (ENSOJAG00000019555)	ENSOJAG00000019672	prmt1 (ENSOJAG00000019709) #22	ENSOJAG00000020087	lin7b (ENSOJAG00000020106)	snrnp70 (ENSOJAG00000020218)	ENSOJAG00000020225 #19	ABCC1 (ENSOJAG00000020335)	AP2A1 (ENSOJAG00000022159) #25	ENSOJAG00000022559	ENSOJAG00000022566	ENSOJAG00000022572	aldh16a1 (ENSOJAG00000022585) #9	ENSOJAG00000022620	ENSOJAG00000022698	ENSOJAG00000022720	eci1 (ENSOJAG00000022855)	dnase1 (ENSOJAG00000022859)
Oryzias_a	ANCESTRAL SPECIES	68	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00390000004832	ENSGT00940000156193	ENSGT00390000018512	ENSGT00910000147748	ENSGT00940000153536.a.b.b.a.b	ENSGT00940000158181.a	ENSGT00550000075089	ENSGT00940000163009.a	ENSGT01020000230389.a.a.a	ENSGT00390000003249	ENSGT00940000158693.A.i	ENSGT00940000176920	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00950000182838.A.a.a #25
Chinese medaka	MODERN SPECIES	3852																prmt1 (ENSOSIG00000002431) #22
Japanese Medaka HdrR	MODERN SPECIES	22	rras (ENSORLG00000025519) #18	ENSORLG00000022669	coil (ENSORLG00000017269)	scpep1 (ENSORLG00000017266)	engase (ENSORLG00000017254)	ENSORLG00000024096	csnk1db (ENSORLG00000017244)	ENSORLG00000022864	slc16a3b (ENSORLG00000017235)	dus1l (ENSORLG00000017223)	ENSORLG00000018580	ENSORLG00000028527	cln3 (ENSORLG00000017204)	ENSORLG00000017194	ENSORLG00000017187	prmt1 (ENSORLG00000017181) #22	ENSORLG00000017165	lin7b (ENSORLG00000017162)	snrnp70 (ENSORLG00000017158)	ENSORLG00000024601 #19	ENSORLG00000023192	orla-uha (ENSORLG00000017153)	ENSORLG00000023681	ENSORLG00000029325	ENSORLG00000023603	ABCC1 (ENSORLG00000017141)	AP2A1 (ENSORLG00000017087) #25	ENSORLG00000027484	rab11fip4a (ENSORLG00000017070)	ENSORLG00000027524	igf2bp1 (ENSORLG00000025629)
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000154776	ENSGT00390000018717.b.a.a	ENSGT00510000048539	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014595.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00940000158693.A	ENSGT00950000183183.a	ENSGT00940000156833.b	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000156435
Pomacentridae	ANCESTRAL SPECIES	199											ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00550000074885	ENSGT00510000048539	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138
Pomacentridae_A	ANCESTRAL SPECIES	184											ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00550000074885	ENSGT00510000048539	ENSGT00940000177422	ENSGT00550000075088.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00530000063801.a.b ##34	ENSGT00940000166816	ENSGT00950000183122.C	ENSGT00940000157367.a.a
Amphiprion	ANCESTRAL SPECIES	226											ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00550000074885	ENSGT00510000048539	ENSGT00940000177422	ENSGT00550000075088.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00940000167870	ENSGT00940000166816	ENSGT00950000183122.C	ENSGT00940000157367.a.a
Clown anemonefish	MODERN SPECIES	1827	ENSAOCG00000013074	ENSAOCG00000013042	sox9b (ENSAOCG00000013022)	ENSAOCG00000012996	SSTR2 (ENSAOCG00000012953)	ENSAOCG00000012942	MED9 (ENSAOCG00000012891)	ENSAOCG00000012885	ENSAOCG00000012875	zgc:113019 (ENSAOCG00000012851)	PRR12 (ENSAOCG00000002335) #17	prrg2 (ENSAOCG00000012788)	rras (ENSAOCG00000012766) #18	ENSAOCG00000012737	AP2A1 (ENSAOCG00000012704) #25	prmt1 (ENSAOCG00000012529) #22	ENSAOCG00000012481	abat (ENSAOCG00000012459)	mettl22 (ENSAOCG00000012381)	ENSAOCG00000012360	ENSAOCG00000012324	mief1 (ENSAOCG00000012288)	ENSAOCG00000012258	ENSAOCG00000012243	ENSAOCG00000012234	adsl (ENSAOCG00000012212)
Orange clownfish	MODERN SPECIES	5	drg2 (ENSAPEG00000001397)	MYO15A (ENSAPEG00000001464)	LLGL1 (ENSAPEG00000001685)	flii (ENSAPEG00000001747)	desi1a (ENSAPEG00000001884)	hao1 (ENSAPEG00000001910)	smg1 (ENSAPEG00000001961)	ENSAPEG00000002136	ENSAPEG00000002181	fbxl16 (ENSAPEG00000002190)	PRR12 (ENSAPEG00000002226) #17	prrg2 (ENSAPEG00000002238)	rras (ENSAPEG00000002251) #18	ENSAPEG00000002290	AP2A1 (ENSAPEG00000002306) #25	prmt1 (ENSAPEG00000002435) #22	ENSAPEG00000002473	ENSAPEG00000002499	ENSAPEG00000002521	abat (ENSAPEG00000002538)	mettl22 (ENSAPEG00000002598)	ENSAPEG00000002632	ENSAPEG00000002667	mief1 (ENSAPEG00000002694)	ENSAPEG00000002724	ENSAPEG00000002739	ENSAPEG00000002765	adsl (ENSAPEG00000002784)	ENSAPEG00000002864	ENSAPEG00000002877	ENSAPEG00000002888
Spiny chromis	MODERN SPECIES	1964														ENSAPOG00000022388	AP2A1 (ENSAPOG00000022478) #25	prmt1 (ENSAPOG00000022535) #22	ENSAPOG00000022548
Bicolor damselfish	MODERN SPECIES	1646																prmt1 (ENSSPAG00000000305) #22	ENSSPAG00000000358	abat (ENSSPAG00000000371)	mettl22 (ENSSPAG00000000424)	hao1 (ENSSPAG00000000435)	smg1 (ENSSPAG00000000477)
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00940000153704.B.d	ENSGT00510000046608.A	ENSGT00940000159428.e.b	ENSGT00390000009628	ENSGT00550000074885	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00940000154318.B	ENSGT00940000165851	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000159774	ENSGT00940000162072	ENSGT00940000158354.c.b	ENSGT00940000165065.a.b	ENSGT00940000161230	ENSGT00940000161529	ENSGT00940000161386	ENSGT00940000159029	ENSGT00940000167564	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b	ENSGT00940000157981.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	68										ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b
Haplochromini	ANCESTRAL SPECIES	79										ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01100000263693
Burton s mouthbrooder	MODERN SPECIES	975										ENSHBUG00000000558	ENSHBUG00000018795 #17	prrg2 (ENSHBUG00000018786)	rras (ENSHBUG00000018763) #18	ENSHBUG00000018754	AP2A1 (ENSHBUG00000018740) #25	prmt1 (ENSHBUG00000018674) #22	ENSHBUG00000018640	lin7b (ENSHBUG00000018635)
Haplochromini_A	ANCESTRAL SPECIES	85											ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b
P. nyererei	MODERN SPECIES	547											ENSPNYG00000003698	ENSPNYG00000003558 #17	prrg2 (ENSPNYG00000003487)	rras (ENSPNYG00000003468) #18	AP2A1 (ENSPNYG00000003390) #25	prmt1 (ENSPNYG00000003352) #22	ENSPNYG00000003340	ENSPNYG00000003332	lin7b (ENSPNYG00000003299)	snrnp70 (ENSPNYG00000003258)	ENSPNYG00000003246 #19	ABCC1 (ENSPNYG00000003168)	zgc:86896 (ENSPNYG00000003119)	SLC16A6 (ENSPNYG00000003108)	gna13a (ENSPNYG00000003078)	rgs9a (ENSPNYG00000002917)	COG1 (ENSPNYG00000002877)	rogdi (ENSPNYG00000002831)	kcnc3a (ENSPNYG00000002448)	ENSPNYG00000002386
Haplochromini_B	ANCESTRAL SPECIES	104											ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00940000167671	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00940000160271	ENSGT00940000176920	ENSGT00950000183183.a	ENSGT00940000155575.i.b	ENSGT00940000157054.c.a	ENSGT00940000156505.t	ENSGT00390000017136	ENSGT00390000007164	ENSGT00940000164903.b	ENSGT01090000260003.a.b.b.a.b
Zebra mbuna	MODERN SPECIES	1107	gng13b (ENSMZEG00005022966)	traf7 (ENSMZEG00005022963)	CASKIN1 (ENSMZEG00005022954)	ENSMZEG00005022951	prpsap2 (ENSMZEG00005022950)	PPP1R9B (ENSMZEG00005022946)	carhsp1 (ENSMZEG00005022941)	nat15 (ENSMZEG00005022929)	ENSMZEG00005022926	ENSMZEG00005022917	ENSMZEG00005022908	ENSMZEG00005022882 #17	prrg2 (ENSMZEG00005022870)	rras (ENSMZEG00005022866) #18	AP2A1 (ENSMZEG00005022860) #25	prmt1 (ENSMZEG00005022856) #22	ENSMZEG00005022853	lin7b (ENSMZEG00005022851)	snrnp70 (ENSMZEG00005022849)	ENSMZEG00005022846 #19	ABCC1 (ENSMZEG00005022834)	ENSMZEG00005022824	zgc:86896 (ENSMZEG00005022819)	SLC16A6 (ENSMZEG00005022817)	gna13a (ENSMZEG00005022814)	rgs9a (ENSMZEG00005022809)	COG1 (ENSMZEG00005022805)	rogdi (ENSMZEG00005022799)	kcnc3a (ENSMZEG00005022741)	ENSMZEG00005022729	ENSMZEG00005022723
Eastern happy	MODERN SPECIES	16								ARL4D (ENSACLG00000011811)	JUP (ENSACLG00000011730)	ENSACLG00000011463	ENSACLG00000011429	ENSACLG00000011422 #17	prrg2 (ENSACLG00000011259)	rras (ENSACLG00000011249) #18	AP2A1 (ENSACLG00000011224) #25	prmt1 (ENSACLG00000011196) #22	ENSACLG00000011187	lin7b (ENSACLG00000011170)	snrnp70 (ENSACLG00000011144)	ENSACLG00000011131 #19	ABCC1 (ENSACLG00000010991)	ENSACLG00000010981	ENSACLG00000010977	zgc:86896 (ENSACLG00000010906)	SLC16A6 (ENSACLG00000010866)	GNA13 (ENSACLG00000010850)	SLC16A6 (ENSACLG00000010819)	gna13a (ENSACLG00000010799)	ENSACLG00000010775	rgs9a (ENSACLG00000010736)	COG1 (ENSACLG00000010722)
Lyretail cichlid	MODERN SPECIES	494											ENSNBRG00000002787	ENSNBRG00000002799	ENSNBRG00000002836 #17	prrg2 (ENSNBRG00000002954)	AP2A1 (ENSNBRG00000002999) #25	prmt1 (ENSNBRG00000003051) #22	lin7b (ENSNBRG00000003090)	snrnp70 (ENSNBRG00000003126)	ENSNBRG00000003161 #19	ABCC1 (ENSNBRG00000003200)	ENSNBRG00000003294	zgc:86896 (ENSNBRG00000003305)	zgc:86896 (ENSNBRG00000003334)	SLC16A6 (ENSNBRG00000003352)	gna13a (ENSNBRG00000003373)	rgs9a (ENSNBRG00000003415)	COG1 (ENSNBRG00000003711)	rogdi (ENSNBRG00000004285)	kcnc3a (ENSNBRG00000004341)	ENSNBRG00000004597
Nile tilapia	MODERN SPECIES	16	hoxb8 (ENSONIG00000042245)	hoxb9a (ENSONIG00000006179)	hoxb13a (ENSONIG00000006178)	eve1 (ENSONIG00000006175)	ENSONIG00000030377	ENSONIG00000007787	ENSONIG00000033598	ENSONIG00000007789	ENSONIG00000036089	ENSONIG00000007792 #17	prrg2 (ENSONIG00000042892)	rras (ENSONIG00000007797) #18	ENSONIG00000031101	AP2A1 (ENSONIG00000007799) #25	ENSONIG00000030317	prmt1 (ENSONIG00000007808) #22	ENSONIG00000007815	ENSONIG00000038458	ENSONIG00000030750	lin7b (ENSONIG00000007820)	ENSONIG00000031260 #19	ENSONIG00000031998	ABCC1 (ENSONIG00000007824)	ENSONIG00000036863	ENSONIG00000036144	zgc:86896 (ENSONIG00000007858)	SLC16A6 (ENSONIG00000007861)	gna13a (ENSONIG00000007862)	ENSONIG00000035862	ENSONIG00000027244	rgs9a (ENSONIG00000007864)
Midas cichlid	MODERN SPECIES	74			ENSACIG00000017031	slc25a23b (ENSACIG00000017041)	pdxdc1 (ENSACIG00000017062)	abat (ENSACIG00000017145)	rcn3 (ENSACIG00000017182) ##14	nosip (ENSACIG00000017303) #15	ENSACIG00000017312	tspan4b (ENSACIG00000017319)	ENSACIG00000017379	PRR12 (ENSACIG00000017743) #17	prrg2 (ENSACIG00000017811)	rras (ENSACIG00000017824) #18	AP2A1 (ENSACIG00000017835) #25	prmt1 (ENSACIG00000017860) #22	ENSACIG00000017873	lin7b (ENSACIG00000017893)	snrnp70 (ENSACIG00000017909)	ENSACIG00000017925 #19	ABCC1 (ENSACIG00000017939)	ENSACIG00000018003	zgc:86896 (ENSACIG00000018011)	SLC16A6 (ENSACIG00000018036)	GNA13 (ENSACIG00000018064)	rgs9a (ENSACIG00000018087)	ENSACIG00000018126	COG1 (ENSACIG00000018140)	ENSACIG00000018225	rogdi (ENSACIG00000018237)	ENSACIG00000018261
Pinecone sodierfish	MODERN SPECIES	22	mpp2a (ENSMMDG00005024325)	pyya (ENSMMDG00005024324)	hspb9 (ENSMMDG00005024320)	rarab (ENSMMDG00005024233)	ENSMMDG00005024217	mettl22 (ENSMMDG00005024215)	abat (ENSMMDG00005024214)	ENSMMDG00005024213	ENSMMDG00005024211	ABCC1 (ENSMMDG00005020742)	hao1 (ENSMMDG00005020376)	lin7b (ENSMMDG00005020348)	snrnp70 (ENSMMDG00005020341)	ENSMMDG00005020340	AP2A1 (ENSMMDG00005020195) #25	prmt1 (ENSMMDG00005017385) #22	prrg2 (ENSMMDG00005017360)	ENSMMDG00005017359 #19	trpm4a (ENSMMDG00005017351)	ENSMMDG00005017349	nosip (ENSMMDG00005017347) #15	rcn3 (ENSMMDG00005017346) ##14	pax10 (ENSMMDG00005017345)	ENSMMDG00005017344	tspan4b (ENSMMDG00005017341)	ENSMMDG00005017340	ENSMMDG00005017339	ENSMMDG00005017337	ENSMMDG00005017335	clec19a (ENSMMDG00005017332)	smg1 (ENSMMDG00005017012)
Otomorpha	ANCESTRAL SPECIES	36	ENSGT00800000125268	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00990000207765	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a	ENSGT00940000161135 #9	ENSGT01100000263614	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00390000002732 #12	ENSGT01090000260003.a.b.b.b	ENSGT00940000156497.a
Otophysi	ANCESTRAL SPECIES	11	ENSGT00800000125268	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a	ENSGT00940000161135 #9	ENSGT01100000263614.a	ENSGT00940000164903.b	ENSGT00940000178247	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00390000016292
Characiphysae	ANCESTRAL SPECIES	11	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A.d	ENSGT00940000158693.A.c	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00940000164511.C.p.b	ENSGT01060000248595.b.a.b.b.b #23	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a.i	ENSGT00940000161135 #9	ENSGT01100000263614.a	ENSGT00940000164903.b	ENSGT00940000178247	ENSGT00940000153222.a.b.a
Characiphysae_b	ANCESTRAL SPECIES	66	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A.d	ENSGT00940000158693.A.c	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00940000164511.C.p.b	ENSGT01060000248595.b.a.b.b.b #23	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a.i.a	ENSGT00950000182841.a.i.b	ENSGT00940000161135 #9	ENSGT01100000263614.a	ENSGT00940000164903.b	ENSGT00940000178247
Characoidei	ANCESTRAL SPECIES	66	ENSGT00390000014595.a.b	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A.d	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT01100000263541.a.a.b.a.b.a.a	ENSGT01100000263541.a.a.b.a.b.a.b	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a.i.a.b	ENSGT00950000182841.a.j	ENSGT00940000161135 #9	ENSGT01100000263614.a	ENSGT00940000164903.b	ENSGT00940000178247
Mexicana tetra	MODERN SPECIES	11	rcn3 (ENSAMXG00000041277) ##14	nosip (ENSAMXG00000010075) #15	POLR3D (ENSAMXG00000010079)	ENSAMXG00000043107	ENSAMXG00000036449	trpm4a (ENSAMXG00000010092)	ENSAMXG00000042218	ENSAMXG00000010148 #19	ENSAMXG00000041606	ENSAMXG00000010199	ENSAMXG00000010272 #17	prrg2 (ENSAMXG00000010311)	rras (ENSAMXG00000010334) #18	ENSAMXG00000032763	AP2A1 (ENSAMXG00000010351) #25	prmt1 (ENSAMXG00000010374) #22	syt5a (ENSAMXG00000034764)	ENSAMXG00000041826	ENSAMXG00000033597	ENSAMXG00000010828	ENSAMXG00000010883	ENSAMXG00000034363	aldh16a1 (ENSAMXG00000010961) #9	ENSAMXG00000037363	kcnc3a (ENSAMXG00000011025)	ENSAMXG00000031918	zgc:193811 (ENSAMXG00000037590)	lin7b (ENSAMXG00000011056)	ENSAMXG00000041525	rnf113a (ENSAMXG00000011273)	strada (ENSAMXG00000034653)
Red-bellied piranha	MODERN SPECIES	50	tspan4b (ENSPNAG00000018861)	ENSPNAG00000018839	pax10 (ENSPNAG00000018834)	rcn3 (ENSPNAG00000018800) ##14	nosip (ENSPNAG00000018761) #15	ENSPNAG00000018730	trpm4a (ENSPNAG00000018714)	ENSPNAG00000018695 #19	ENSPNAG00000018665	ENSPNAG00000018402	PRR12 (ENSPNAG00000018387) #17	prrg2 (ENSPNAG00000018372)	rras (ENSPNAG00000018361) #18	ENSPNAG00000018339	AP2A1 (ENSPNAG00000018303) #25	prmt1 (ENSPNAG00000018063) #22	ENSPNAG00000018039	prl (ENSPNAG00000018032)	ENSPNAG00000018021	ENSPNAG00000017909 #23	ENSPNAG00000017828	pih1d1 (ENSPNAG00000017808) #8	tnnt1 (ENSPNAG00000017742)	syt5a (ENSPNAG00000017706)	ENSPNAG00000017688	ENSPNAG00000003489	ENSPNAG00000017666	aldh16a1 (ENSPNAG00000017626) #9	ENSPNAG00000017569	kcnc3a (ENSPNAG00000003482)	zgc:193811 (ENSPNAG00000017481)
Electric eel	MODERN SPECIES	226						ENSEEEG00000015952	ENSEEEG00000015953	ENSEEEG00000015954 #19	ENSEEEG00000015955	ENSEEEG00000015957	PRR12 (ENSEEEG00000015962) #17	prrg2 (ENSEEEG00000015965)	rras (ENSEEEG00000015969) #18	ENSEEEG00000015970	AP2A1 (ENSEEEG00000015975) #25	prmt1 (ENSEEEG00000016124) #22	prl (ENSEEEG00000016146)	ENSEEEG00000016147	ENSEEEG00000016149 #23	ENSEEEG00000016152 #23	pih1d1 (ENSEEEG00000016156) #8	tnnt1 (ENSEEEG00000016168)	syt5a (ENSEEEG00000016181)	ENSEEEG00000016188	ENSEEEG00000016198	aldh16a1 (ENSEEEG00000016205) #9	ENSEEEG00000016208	engase (ENSEEEG00000016212)	slc16a3a (ENSEEEG00000016213)	csnk1da (ENSEEEG00000016214)	dus1l (ENSEEEG00000016224)
Channel catfish	MODERN SPECIES	11	ENSIPUG00000007202	ENSIPUG00000007192	pax10 (ENSIPUG00000007187)	rcn3 (ENSIPUG00000007133) ##14	nosip (ENSIPUG00000007055) #15	ENSIPUG00000007036	trpm4a (ENSIPUG00000006995)	scaf1 (ENSIPUG00000006965) #19	ENSIPUG00000006849	ENSIPUG00000006814	PRR12 (ENSIPUG00000006794) #17	Prrg2 (ENSIPUG00000006739)	rras (ENSIPUG00000006702) #18	ENSIPUG00000006683	AP2A1 (ENSIPUG00000006589) #25	prmt1 (ENSIPUG00000006472) #22	ENSIPUG00000006450	prl (ENSIPUG00000006425)	ENSIPUG00000006333	ENSIPUG00000006320 #23	ENSIPUG00000006241 #23	pih1d1 (ENSIPUG00000006218) #8	Tnnt1 (ENSIPUG00000006095)	SYT1 (ENSIPUG00000006052)	ALDH16A1 (ENSIPUG00000005922) #9	ENSIPUG00000005885	ENSIPUG00000005845	ENSIPUG00000005826
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT00800000125268	ENSGT00940000165851	ENSGT00940000154318.B	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT01040000240919	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00980000198607	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a.l	ENSGT00950000182841.a.k	ENSGT00940000161135 #9	ENSGT01100000263614.a	ENSGT01090000260003.a.b.b.a.b	ENSGT01100000263614.b	ENSGT00940000164903.b	ENSGT00940000178247
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	22	ENSGT00940000165851.b	ENSGT00940000154318.B.b	ENSGT00940000155391.b.d.b.a	ENSGT01010000222360.D.a ##14	ENSGT00390000015505.a.a #15	ENSGT01040000240919.d	ENSGT00940000158693.A.b	ENSGT00950000183205.b.a.b.a.a.l #19	ENSGT00970000194335.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.i #17	ENSGT00940000158268.b.c	ENSGT00940000160972.c #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a.m.a #25	ENSGT00940000154700.k #22	ENSGT00950000182818.A.u	ENSGT00940000164511.C.q.d.a.a	ENSGT01060000248595.b.a.b.b.a.a.g #23	ENSGT00510000048192 #8	ENSGT00940000160609.f.j	ENSGT00940000166981.b	ENSGT00950000182841.a.k	ENSGT00940000161135.b #9	ENSGT01100000263614.a.b	ENSGT01100000263614.b.b	ENSGT00940000164903.b.b	ENSGT00940000178247.e	ENSGT00940000153222.a.b.a.c	ENSGT00940000160292.a	ENSGT00390000016292.b
Cyprininae_a	ANCESTRAL SPECIES	54	ENSGT00940000154318.B.b	ENSGT00940000155391.b.d.b.a	ENSGT01010000222360.D.a ##14	ENSGT00390000015505.a.a #15	ENSGT01040000240919.d	ENSGT00940000158693.A.b	ENSGT00950000183205.b.a.b.a.a.l #19	ENSGT00970000194335.a.b	ENSGT00390000014700.b.a.b.b.a	ENSGT00440000037417.B.a.i #17	ENSGT00940000158268.b.c	ENSGT00940000160972.c #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a.n #25	ENSGT00950000182838.A.a.a.m.a #25	ENSGT00940000154700.k #22	ENSGT00950000182818.A.u	ENSGT00940000164511.C.q.d.a.a	ENSGT01060000248595.b.a.b.b.a.a.g #23	ENSGT00510000048192.a #8	ENSGT00950000182818.A.v	ENSGT00940000164511.C.q.c	ENSGT01060000248595.b.a.b.b.a.a.h #23	ENSGT00510000048192.b #8	ENSGT00940000160609.f.j	ENSGT00940000166981.b	ENSGT00950000182841.a.k	ENSGT00940000161135.b #9	ENSGT01100000263614.a.b	ENSGT01100000263614.b.b	ENSGT00940000164903.b.b
Common carp reference	MODERN SPECIES	3	rnf25 (ENSCCRG00000080225)	ENSCCRG00000018412	thoc6 (ENSCCRG00000018542)	srrm2 (ENSCCRG00000075317)	ENSCCRG00000062436	tspan4b (ENSCCRG00000030887)	ENSCCRG00000030893	pax10 (ENSCCRG00000058694)	rcn3 (ENSCCRG00000030906) ##14	nosip (ENSCCRG00000082623) #15	trpm4a (ENSCCRG00000000199)	ENSCCRG00000000300 #19	ENSCCRG00000000319	ENSCCRG00000066330 #17	ENSCCRG00000049726 #25	prmt1 (ENSCCRG00000072979) #22	prl (ENSCCRG00000019084)	ENSCCRG00000082324	ENSCCRG00000019205 #23	pih1d1 (ENSCCRG00000020730) #8	ENSCCRG00000061134	tnnt1 (ENSCCRG00000041423)	syt5a (ENSCCRG00000041410)	fthl27 (ENSCCRG00000052532)	aldh16a1 (ENSCCRG00000066113) #9	ENSCCRG00000020771	ENSCCRG00000021810	ENSCCRG00000054608	kcnc3a (ENSCCRG00000072956)	lin7b (ENSCCRG00000020872)	snrnp70 (ENSCCRG00000063294)
Golden-line barbel	MODERN SPECIES	490	tspan4b (ENSSGRG00000041327)	ENSSGRG00000041325	pax10 (ENSSGRG00000041323)	rcn3 (ENSSGRG00000041258) ##14	nosip (ENSSGRG00000041169) #15	ENSSGRG00000041164	trpm4a (ENSSGRG00000041159)	ENSSGRG00000041154 #19	ENSSGRG00000041112	ENSSGRG00000041097	ENSSGRG00000041093 #17	prrg2 (ENSSGRG00000041091)	rras (ENSSGRG00000041089) #18	ENSSGRG00000041088	AP2A1 (ENSSGRG00000037418) #25	prmt1 (ENSSGRG00000037335) #22	prl (ENSSGRG00000037318)	prl (ENSSGRG00000037313)
Goldfish	MODERN SPECIES	22	ENSCARG00000000620	tspan4b (ENSCARG00000000663)	ENSCARG00000000669	pax10 (ENSCARG00000000677)	rcn3 (ENSCARG00000000697) ##14	nosip (ENSCARG00000000721) #15	ENSCARG00000000736	ENSCARG00000000743	trpm4a (ENSCARG00000000770)	ENSCARG00000000839 #19	ENSCARG00000000849	ENSCARG00000000865 #17	prrg2 (ENSCARG00000000893)	rras (ENSCARG00000000899) #18	AP2A1 (ENSCARG00000001111) #25	prmt1 (ENSCARG00000002648) #22	prl (ENSCARG00000002943)	ENSCARG00000002958	ENSCARG00000003076 #23	pih1d1 (ENSCARG00000003286) #8	tnnt1 (ENSCARG00000003297)	syt5a (ENSCARG00000003311)	fthl27 (ENSCARG00000003329)	aldh16a1 (ENSCARG00000003348) #9	ENSCARG00000003364	ENSCARG00000003370	kcnc3a (ENSCARG00000003380)	zgc:193811 (ENSCARG00000003387)	lin7b (ENSCARG00000003396)	snrnp70 (ENSCARG00000003412)	rnf113a (ENSCARG00000003431)
Cyprininae	ANCESTRAL SPECIES	1079															ENSGT00950000182838.A.a.a.n #25	ENSGT00940000154700.l #22	ENSGT01100000263541.a.a.b.a.b.a.a	ENSGT01100000263541.a.a.b.a.b.a.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	20	ENSCARG00000033783	prkcbb (ENSCARG00000032872)	smarce1 (ENSCARG00000032688)	CA10 (ENSCARG00000032431)	pyya (ENSCARG00000032402)	hspb9 (ENSCARG00000032399)	rarab (ENSCARG00000032122)	ENSCARG00000031857	ENSCARG00000031823	alkbh7 (ENSCARG00000031816)	gtf2f1 (ENSCARG00000031771)	ENSCARG00000031732	ENSCARG00000031724	ENSCARG00000031721	ENSCARG00000031710 #25	prmt1 (ENSCARG00000031206) #22	ENSCARG00000031172	ENSCARG00000031165	ENSCARG00000031158	ENSCARG00000031154	ENSCARG00000031150	ENSCARG00000031144	ENSCARG00000031138	ENSCARG00000031135	ENSCARG00000031127	ENSCARG00000031123	ENSCARG00000031117	ENSCARG00000031110	ENSCARG00000031101	ENSCARG00000031087	ENSCARG00000031065
Goldfish	MODERN SPECIES	20	ENSCARG00000018436	ENSCARG00000018440	aldh3b1 (ENSCARG00000018455)	clpp (ENSCARG00000018509)	si:dkey-204f11.64 (ENSCARG00000018529)	carm1 (ENSCARG00000018587)	yipf2 (ENSCARG00000019705)	timm29 (ENSCARG00000019713)	slc25a23b (ENSCARG00000019729)	znf207a (ENSCARG00000019908)	ENSCARG00000019952	septin9a (ENSCARG00000020101)	prrg2 (ENSCARG00000021202)	rras (ENSCARG00000021232) #18	AP2A1 (ENSCARG00000021331) #25	prmt1 (ENSCARG00000022166) #22	ENSCARG00000025827	prl (ENSCARG00000025840)	ENSCARG00000025859	ENSCARG00000025866	ccdc103 (ENSCARG00000025879)	ENSCARG00000025905	ENSCARG00000025919	gtpbp1 (ENSCARG00000025975)	sgsm3 (ENSCARG00000026262)	abi3a (ENSCARG00000026388)	mpp2a (ENSCARG00000026432)	septin9a (ENSCARG00000026485)	clpp (ENSCARG00000026511)	aldh3b1 (ENSCARG00000026554)	ENSCARG00000026587
Cyprininae_a	ANCESTRAL SPECIES	546						ENSGT00390000015505.b #15	ENSGT01040000240919.c	ENSGT00940000158693.A.a	ENSGT00950000183205.b.a.b.a.a.k #19	ENSGT00970000194335.a.a	ENSGT00970000194335.b	ENSGT00440000037417.B.a.j #17	ENSGT00940000158268.b.d	ENSGT00940000160972.d #18	ENSGT00950000182838.A.a.a.m.b #25	ENSGT00940000154700.l #22	ENSGT01100000263541.a.a.b.a.b.a.a	ENSGT01100000263541.a.a.b.a.b.a.b
Common carp reference	MODERN SPECIES	1	thoc6 (ENSCCRG00000018421)	srrm2 (ENSCCRG00000067112)	ENSCCRG00000052987	ENSCCRG00000057407	pax10 (ENSCCRG00000018561)	rcn3 (ENSCCRG00000018568) ##14	nosip (ENSCCRG00000030912) #15	ENSCCRG00000077824	trpm4a (ENSCCRG00000081298)	ENSCCRG00000067038 #19	ENSCCRG00000056333	ENSCCRG00000074234 #17	prrg2 (ENSCCRG00000001919)	ENSCCRG00000057760	ENSCCRG00000002072 #25	prmt1 (ENSCCRG00000053120) #22	ENSCCRG00000063545	ENSCCRG00000076554	ENSCCRG00000017212	ENSCCRG00000065959	ENSCCRG00000067167	ENSCCRG00000050839	tnnt1 (ENSCCRG00000020732)	syt5a (ENSCCRG00000020740)	fthl29 (ENSCCRG00000080047)	aldh16a1 (ENSCCRG00000066167) #9	baxb (ENSCCRG00000063546)	ENSCCRG00000020824	ENSCCRG00000020860	kcnc3a (ENSCCRG00000054664)	zgc:193811 (ENSCCRG00000022630)
Golden-line barbel	MODERN SPECIES	48	ENSSGRG00000054891	tspan4b (ENSSGRG00000054894)	ENSSGRG00000054895	ENSSGRG00000054897	rcn3 (ENSSGRG00000054898) ##14	nosip (ENSSGRG00000054904) #15	ENSSGRG00000054936	trpm4a (ENSSGRG00000054937)	ENSSGRG00000054940 #19	ENSSGRG00000054941	ENSSGRG00000054946	ENSSGRG00000054947 #17	prrg2 (ENSSGRG00000054949)	rras (ENSSGRG00000054951) #18	AP2A1 (ENSSGRG00000054962) #25	prmt1 (ENSSGRG00000054983) #22	ENSSGRG00000054984	prl (ENSSGRG00000054985)	ENSSGRG00000054987	ENSSGRG00000054989 #23	pih1d1 (ENSSGRG00000054993) #8	tnnt1 (ENSSGRG00000054995)	syt5a (ENSSGRG00000054996)	ENSSGRG00000054997	ENSSGRG00000054998	aldh16a1 (ENSSGRG00000055000) #9	ENSSGRG00000055001	kcnc3a (ENSSGRG00000055002)	lin7b (ENSSGRG00000055004)	snrnp70 (ENSSGRG00000055005)	rnf113a (ENSSGRG00000055006)
Zebrafish	MODERN SPECIES	18	ENSDARG00000004459	tspan4b (ENSDARG00000070391)	ENSDARG00000090625	pax10 (ENSDARG00000053364)	rcn3 (ENSDARG00000037961) ##14	nosip (ENSDARG00000037958) #15	ENSDARG00000096257	trpm4a (ENSDARG00000059993)	ENSDARG00000054010 #19	ENSDARG00000017579	PRR12 (ENSDARG00000075849) #17	prrg2 (ENSDARG00000087193)	rras (ENSDARG00000006553) #18	ENSDARG00000094836	AP2A1 (ENSDARG00000054320) #25	prmt1 (ENSDARG00000010246) #22	prl (ENSDARG00000037946)	si:dkey-16p21.8 (ENSDARG00000096849)	ENSDARG00000077545	ENSDARG00000037943 #23	pih1d1 (ENSDARG00000037955) #8	tnnt1 (ENSDARG00000037954)	syt5a (ENSDARG00000037941)	ENSDARG00000116586	ENSDARG00000073936	ENSDARG00000113150	fthl29 (ENSDARG00000113977)	fthl31 (ENSDARG00000094210)	fthl30 (ENSDARG00000077360)	fthl28 (ENSDARG00000076221)	fthl27 (ENSDARG00000031776)
Clupeiformes	ANCESTRAL SPECIES	84	ENSGT00940000164039.b.a	ENSGT00940000164039.a	ENSGT00940000165867.A	ENSGT00940000155391.b	ENSGT01010000222360.D.a ##14	ENSGT00390000015505 #15	ENSGT00990000207765	ENSGT00940000158693.A	ENSGT00950000183205.b.a.b.a.a #19	ENSGT00970000194335	ENSGT00440000037417.B.a #17	ENSGT00940000158268.b	ENSGT00940000160972 #18	ENSGT00940000167194	ENSGT00950000182838.A.a.a #25	ENSGT00940000154700 #22	ENSGT00950000182818.A	ENSGT00940000164511.C.q	ENSGT01060000248595.b.a.b.b.a.a #23	ENSGT00510000048192 #8	ENSGT00940000160609.f	ENSGT00940000166981	ENSGT00950000182841.a	ENSGT00940000161135 #9	ENSGT00940000164903.b	ENSGT00940000178247	ENSGT00940000153222.a.b.a	ENSGT00940000160292	ENSGT00390000002732 #12	ENSGT01090000260003.a.b.b.b	ENSGT00940000156497.a
Denticle herring	MODERN SPECIES	17	nosip (ENSDCDG00000005200) #15	ENSDCDG00000005205	trpm4a (ENSDCDG00000005208)	ENSDCDG00000005214 #19	ENSDCDG00000005221	ENSDCDG00000005236 #17	prrg2 (ENSDCDG00000005240)	rras (ENSDCDG00000005242) #18	ENSDCDG00000005245	AP2A1 (ENSDCDG00000005259) #25	ENSDCDG00000005279	ENSDCDG00000005291	ENSDCDG00000005294	ENSDCDG00000005302	wdr46 (ENSDCDG00000005318)	prmt1 (ENSDCDG00000005341) #22	prl (ENSDCDG00000005960)	ENSDCDG00000007748	pih1d1 (ENSDCDG00000008842) #8	tnnt1 (ENSDCDG00000008859)	syt5a (ENSDCDG00000009476)	fthl27 (ENSDCDG00000009511)	aldh16a1 (ENSDCDG00000009570) #9	kcnc3a (ENSDCDG00000009608)	lin7b (ENSDCDG00000009633)	ENSDCDG00000009682	ENSDCDG00000009690	rps11 (ENSDCDG00000009699) #12	baxa (ENSDCDG00000009725)	ENSDCDG00000009741	gpatch8 (ENSDCDG00000009763)
Atlantic herring	MODERN SPECIES		tspan4b (ENSCHAG00000008650)	ENSCHAG00000008630	pax10 (ENSCHAG00000008615)	rcn3 (ENSCHAG00000008580) ##14	nosip (ENSCHAG00000008489) #15	ENSCHAG00000008482	trpm4a (ENSCHAG00000007576)	ENSCHAG00000007398 #19	ENSCHAG00000007134	ENSCHAG00000007089 #17	PRR12 (ENSCHAG00000007076) #17	prrg2 (ENSCHAG00000007015)	rras (ENSCHAG00000006991) #18	ENSCHAG00000006985	AP2A1 (ENSCHAG00000006529) #25	prmt1 (ENSCHAG00000001278) #22	prl (ENSCHAG00000000101)	ENSCHAG00000000091	ENSCHAG00000000090	ENSCHAG00000000089	ENSCHAG00000000065 #23	pih1d1 (ENSCHAG00000018711) #8	tnnt1 (ENSCHAG00000018666)	syt5a (ENSCHAG00000018641)	fthl31 (ENSCHAG00000018511)	aldh16a1 (ENSCHAG00000018497) #9	kcnc3a (ENSCHAG00000018396)	zgc:193811 (ENSCHAG00000018354)	RNF151 (ENSCHAG00000018325)	rps2 (ENSCHAG00000018204)	ndufb10 (ENSCHAG00000018195)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	2	ENSECRG00000009513	SPIB (ENSECRG00000009500)	pold1 (ENSECRG00000009466)	NR1H2 (ENSECRG00000009444)	ENSECRG00000009422	ENSECRG00000009406	ENSECRG00000009368	pih1d1 (ENSECRG00000009346) #8	ENSECRG00000009335	tnnt1 (ENSECRG00000009322)	dnaaf3 (ENSECRG00000009302)	SYT5 (ENSECRG00000009287)	ENSECRG00000009269	ENSECRG00000009232	AP2A1 (ENSECRG00000009158) #25	prmt1 (ENSECRG00000009071) #22	tspan4b (ENSECRG00000009036)	ENSECRG00000009022	pax10 (ENSECRG00000008974)	rcn3 (ENSECRG00000008930) ##14	nosip (ENSECRG00000008906) #15	ENSECRG00000008878	ENSECRG00000008859	ENSECRG00000008848	ENSECRG00000008836	ENSECRG00000008824	ENSECRG00000008806	dedd (ENSECRG00000008793)	ENSECRG00000008781	nrg2b (ENSECRG00000008744)	ENSECRG00000008735
Reedfish	MODERN SPECIES	8	bloc1s6 (ENSECRG00000021900)	slc30a4 (ENSECRG00000021911)	ENSECRG00000021916	zgc:153317 (ENSECRG00000021922)	spata5l1 (ENSECRG00000021927)	ATP8B4 (ENSECRG00000021944)	ENSECRG00000021989	DTWD1 (ENSECRG00000022015)	FGF7 (ENSECRG00000022020)	galk2 (ENSECRG00000022025)	notch3 (ENSECRG00000022132)	ENSECRG00000022394	ENSECRG00000022401	olfm2b (ENSECRG00000017093)	VAV1 (ENSECRG00000017128)	prmt1 (ENSECRG00000017184) #22	SH2D3A (ENSECRG00000017240)	trip10a (ENSECRG00000017283)	ENSECRG00000017358	ENSECRG00000017476	nr5a5 (ENSECRG00000017711)	raver1 (ENSECRG00000018070)	TYK2 (ENSECRG00000018110)	cdc37 (ENSECRG00000018208)	GCNT3 (ENSECRG00000018327)	gtf2a2 (ENSECRG00000018344)	bnip2 (ENSECRG00000018372)	arpin (ENSECRG00000018421)	ENSECRG00000018446	si:dkey-12e7.1 (ENSECRG00000018486)	ap3s2 (ENSECRG00000018497)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	301																prmt1 (ENSCMIG00000002066) #22
Elephant shark	MODERN SPECIES	3178																ENSCMIG00000005030 #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154700 #22
Lamprey	MODERN SPECIES	6038																prmt1 (ENSPMAG00000006415) #22
Hagfish	MODERN SPECIES	264		ENSEBUG00000016793	ENSEBUG00000009313	lcp1 (ENSEBUG00000001977)	PDE9A (ENSEBUG00000000859)	ENSEBUG00000008088	tnnt3a (ENSEBUG00000005308)	gatd1 (ENSEBUG00000000296)	ENSEBUG00000009819	ENSEBUG00000013390	ENSEBUG00000017088	ENSEBUG00000015267	ENSEBUG00000015323	TSPAN4 (ENSEBUG00000013847)	CD151 (ENSEBUG00000004231)	prmt1 (ENSEBUG00000002597) #22	ENSEBUG00000005360	samm50l (ENSEBUG00000004210)	ENSEBUG00000013356	ap3s2 (ENSEBUG00000010217)	ENSEBUG00000007557	ENSEBUG00000009711	ENSEBUG00000011118
Ciona	ANCESTRAL SPECIES	358																ENSGT00940000154700 #22	ENSGT00940000154938	ENSGT00390000014349	ENSGT00940000154859
Ciona intestinalis	DUPLICATION
Ciona intestinalis	MODERN SPECIES	33	ENSCING00000014897	ENSCING00000014896	ENSCING00000007605	ENSCING00000023327	ENSCING00000021037	ENSCING00000014959	ENSCING00000023981	ENSCING00000007611	ENSCING00000007614	ENSCING00000018664	ENSCING00000015045	ENSCING00000023224	ci-rsp9 (ENSCING00000014743)	ENSCING00000007544	ENSCING00000020608	ENSCING00000007480 #22	ENSCING00000007517	ENSCING00000022096	ENSCING00000007532	ENSCING00000015009 #22	ENSCING00000014796	ENSCING00000018823	ENSCING00000021413	ENSCING00000014790	ENSCING00000022487	ENSCING00000019200	ENSCING00000015992	ENSCING00000023968	ENSCING00000022629	ENSCING00000024835	ENSCING00000020972
Ciona intestinalis	MODERN SPECIES	33	ENSCING00000021037	ENSCING00000014959	ENSCING00000023981	ENSCING00000007611	ENSCING00000007614	ENSCING00000018664	ENSCING00000015045	ENSCING00000023224	ci-rsp9 (ENSCING00000014743)	ENSCING00000007544	ENSCING00000020608	ENSCING00000007480 #22	ENSCING00000007517	ENSCING00000022096	ENSCING00000007532	ENSCING00000015009 #22	ENSCING00000014796	ENSCING00000018823	ENSCING00000021413	ENSCING00000014790	ENSCING00000022487	ENSCING00000019200	ENSCING00000015992	ENSCING00000023968	ENSCING00000022629	ENSCING00000024835	ENSCING00000020972	ENSCING00000025072	ENSCING00000014801	ENSCING00000024598	ENSCING00000014800
Ciona savignyi	MODERN SPECIES	82	ENSCSAVG00000008479	ENSCSAVG00000008478	ENSCSAVG00000008469	ENSCSAVG00000008427	ENSCSAVG00000008424	ENSCSAVG00000008409	ENSCSAVG00000008407	ENSCSAVG00000008405	ENSCSAVG00000008401	ENSCSAVG00000008391	ENSCSAVG00000008389	ENSCSAVG00000008349	ENSCSAVG00000008332	ENSCSAVG00000008329	ENSCSAVG00000008326	ENSCSAVG00000008184 #22	ENSCSAVG00000008069	ENSCSAVG00000008066	ENSCSAVG00000008061	ENSCSAVG00000008058	ENSCSAVG00000008055	ENSCSAVG00000008053	ENSCSAVG00000007760	ENSCSAVG00000007444	ENSCSAVG00000007441	ENSCSAVG00000007438	ENSCSAVG00000007436	ENSCSAVG00000007433	ENSCSAVG00000007287	ENSCSAVG00000007093	ENSCSAVG00000007090