Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00950000183110.b.b #7	ENSGT00950000182955.a.a.a #8	ENSGT00390000012668 #9	ENSGT00940000160336 #10	ENSGT00940000154539.b #11	ENSGT00390000002579 #12	ENSGT01010000222313.A.b.a.d #13	ENSGT00390000000954 #14	ENSGT01050000244924.a.b #15	ENSGT00500000044896 #16	ENSGT00940000155315 #17	ENSGT00940000158610 #18	ENSGT00940000156181.B #19	ENSGT00940000157718 #20	ENSGT00940000157704 #21	ENSGT00390000012596 #22	ENSGT00950000182827.C #23	ENSGT00940000157395 #24	ENSGT00390000006932 #25	ENSGT00390000003182 #26	ENSGT00940000158998 #27	ENSGT00940000156750 #28	ENSGT00530000063404.b #29	ENSGT00940000155899 #30	ENSGT00390000009609	ENSGT00940000156511 #31	ENSGT00940000158820 #32	ENSGT00940000159571 #33	ENSGT00390000010568 #34	ENSGT01050000244887.A.a.b #35	ENSGT00940000156998 #36
Hystricomorpha_a	ANCESTRAL SPECIES	14	ENSGT00950000183110.b.b #7	ENSGT00950000182955.a.a.a #8	ENSGT00390000012668 #9	ENSGT00940000160336 #10	ENSGT00940000154539.b #11	ENSGT00390000002579 #12	ENSGT01010000222313.A.b.a.d #13	ENSGT00390000000954 #14	ENSGT01050000244924.a.b #15	ENSGT00500000044896 #16	ENSGT00940000155315 #17	ENSGT00940000158610 #18	ENSGT00940000156181.B #19	ENSGT00940000157718 #20	ENSGT00940000157704 #21	ENSGT00390000012596 #22	ENSGT00950000182827.C #23	ENSGT00940000157395 #24	ENSGT00390000006932 #25	ENSGT00390000003182 #26	ENSGT00940000158998 #27	ENSGT00940000156750 #28	ENSGT00530000063404.b #29	ENSGT00940000155899 #30	ENSGT00390000009609	ENSGT00940000156511 #31	ENSGT00940000158820 #32	ENSGT00940000159571 #33	ENSGT00390000010568 #34	ENSGT01050000244887.A.a.b #35	ENSGT00940000156998 #36
Guinea pig	MODERN SPECIES	2	ARHGAP29 (ENSCPOG00000015466) #7	ABCD3 (ENSCPOG00000002087) #8	F3 (ENSCPOG00000002092) #9	SLC44A3 (ENSCPOG00000006860) #10	CNN3 (ENSCPOG00000006865) #11	ALG14 (ENSCPOG00000025239) #12	TLCD4 (ENSCPOG00000001904) #13	RWDD3 (ENSCPOG00000037817) #14	PTBP2 (ENSCPOG00000003762) #15	DPYD (ENSCPOG00000003769) #16	SNX7 (ENSCPOG00000012454) #17	PLPPR5 (ENSCPOG00000002369) #18	PLPPR4 (ENSCPOG00000006308) #19	PALMD (ENSCPOG00000020596) #20	FRRS1 (ENSCPOG00000004910) #21	AGL (ENSCPOG00000011683) #22	SLC35A3 (ENSCPOG00000009156) #23	MFSD14A (ENSCPOG00000000691) #24	SASS6 (ENSCPOG00000000693) #25	TRMT13 (ENSCPOG00000000694) #26	LRRC39 (ENSCPOG00000000696) #27	DBT (ENSCPOG00000006774) #28	ENSCPOG00000009296 #29	CDC14A (ENSCPOG00000013851) #30	VCAM1 (ENSCPOG00000006727) #31	EXTL2 (ENSCPOG00000030009) #32	SLC30A7 (ENSCPOG00000007627) #33	DPH5 (ENSCPOG00000007633) #34	S1PR1 (ENSCPOG00000040695) #35	OLFM3 (ENSCPOG00000011871) #36	COL11A1 (ENSCPOG00000012629) #37
Hystricomorpha_b	ANCESTRAL SPECIES	6	ENSGT00950000183110.b.b #7	ENSGT00950000182955.a.a.a #8	ENSGT00390000012668 #9	ENSGT00940000160336 #10	ENSGT00940000154539.b #11	ENSGT00390000002579 #12	ENSGT01010000222313.A.b.a.d #13	ENSGT00390000000954 #14	ENSGT01050000244924.a.b #15	ENSGT00500000044896 #16	ENSGT00940000155315 #17	ENSGT00940000158610 #18	ENSGT00940000156181.B #19	ENSGT00940000157718 #20	ENSGT00940000157704 #21	ENSGT00390000012596 #22	ENSGT00950000182827.C #23	ENSGT00940000157395 #24	ENSGT00390000006932 #25	ENSGT00390000003182 #26	ENSGT00940000158998 #27	ENSGT00940000156750 #28	ENSGT00530000063404.b #29	ENSGT00940000155899 #30	ENSGT00390000009609	ENSGT00940000156511 #31	ENSGT00940000158820 #32	ENSGT00940000159571 #33	ENSGT00390000010568 #34	ENSGT01050000244887.A.a.b #35	ENSGT00940000156998 #36
Degu	MODERN SPECIES	125																AGL (ENSODEG00000006554) #22	SLC35A3 (ENSODEG00000005734) #23	ENSODEG00000006166	MFSD14A (ENSODEG00000007711) #24	SASS6 (ENSODEG00000006898) #25	ENSODEG00000006075 #26	LRRC39 (ENSODEG00000006616) #27	DBT (ENSODEG00000006539) #28	RTCA (ENSODEG00000006990) #29	CDC14A (ENSODEG00000005581) #30	GPR88 (ENSODEG00000005971)	EXTL2 (ENSODEG00000005690) #32	SLC30A7 (ENSODEG00000005933) #33	ENSODEG00000005710 #34	S1PR1 (ENSODEG00000005867) #35	OLFM3 (ENSODEG00000007926) #36
Long-tailed chinchilla	MODERN SPECIES	142			SLC44A3 (ENSCLAG00000007928) #10	CNN3 (ENSCLAG00000008495) #11	ALG14 (ENSCLAG00000005571) #12	TLCD4 (ENSCLAG00000006336) #13	RWDD3 (ENSCLAG00000009102) #14	PTBP2 (ENSCLAG00000016295) #15	DPYD (ENSCLAG00000009825) #16	ENSCLAG00000004609	SNX7 (ENSCLAG00000005256) #17	PLPPR5 (ENSCLAG00000005411) #18	PLPPR4 (ENSCLAG00000005614) #19	PALMD (ENSCLAG00000004333) #20	FRRS1 (ENSCLAG00000005704) #21	AGL (ENSCLAG00000006779) #22	SLC35A3 (ENSCLAG00000007132) #23	MFSD14A (ENSCLAG00000005104) #24	SASS6 (ENSCLAG00000006884) #25	TRMT13 (ENSCLAG00000008220) #26	LRRC39 (ENSCLAG00000010756) #27	DBT (ENSCLAG00000013220) #28	RTCA (ENSCLAG00000006125) #29	CDC14A (ENSCLAG00000006592) #30	VCAM1 (ENSCLAG00000007563) #31	EXTL2 (ENSCLAG00000004454) #32	SLC30A7 (ENSCLAG00000004866) #33	DPH5 (ENSCLAG00000006002) #34	S1PR1 (ENSCLAG00000017667) #35	OLFM3 (ENSCLAG00000011343) #36	COL11A1 (ENSCLAG00000008804) #37
Naked mole-rat female	MODERN SPECIES	10	DPH5 (ENSHGLG00000001639) #34	SLC30A7 (ENSHGLG00000001503) #33	EXTL2 (ENSHGLG00000047823) #32	ENSHGLG00000001392 #31	ENSHGLG00000041802	ENSHGLG00000032170 #16	ENSHGLG00000041024	ENSHGLG00000001141	ENSHGLG00000001250 #17	ENSHGLG00000001402 #18	PLPPR4 (ENSHGLG00000001471) #19	ENSHGLG00000046587	PALMD (ENSHGLG00000043255) #20	FRRS1 (ENSHGLG00000038575) #21	ENSHGLG00000043942	AGL (ENSHGLG00000001869) #22	SLC35A3 (ENSHGLG00000001999) #23	ENSHGLG00000032669	MFSD14A (ENSHGLG00000002043) #24	SASS6 (ENSHGLG00000002021) #25	TRMT13 (ENSHGLG00000002164) #26	LRRC39 (ENSHGLG00000002276) #27	ENSHGLG00000002328	ENSHGLG00000047676	DBT (ENSHGLG00000002562) #28	RTCA (ENSHGLG00000002617) #29	CDC14A (ENSHGLG00000002707) #30	ENSHGLG00000001346	ENSHGLG00000041233	ENSHGLG00000045438	ENSHGLG00000004138 #15