Murinae	ANCESTRAL SPECIES	9	ENSGT00940000153189.B #7	ENSGT00390000003590 #8	ENSGT00390000015228 #9	ENSGT00390000011295.a #10	ENSGT00390000010316.k #11	ENSGT00530000064199 #13	ENSGT00940000160319 #14	ENSGT00400000022323 #12	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #31	ENSGT00500000044939 #32	ENSGT00940000156089 #33	ENSGT00940000156552 #34	ENSGT00530000063873.A #35	ENSGT00530000063873.B #36	ENSGT00390000000801 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00940000159722	ENSGT00940000153189.B #7	ENSGT00390000003590 #8	ENSGT00390000015228 #9	ENSGT00390000011295.a #10	ENSGT00390000010316.k #11	ENSGT00530000064199 #13	ENSGT00940000160319 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #31	ENSGT00500000044939 #32	ENSGT00940000156089 #33	ENSGT00940000156552 #34	ENSGT00530000063873.A #35	ENSGT00530000063873.B #36	ENSGT00390000000801 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000159722	ENSGT00940000153189.B #7	ENSGT00390000003590 #8	ENSGT00390000015228 #9	ENSGT00390000011295.a #10	ENSGT00390000010316.k #11	ENSGT00530000064199 #13	ENSGT00940000160319 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #31	ENSGT00500000044939 #32	ENSGT00940000156089 #33	ENSGT00940000156552 #34	ENSGT00530000063873.A #35	ENSGT00530000063873.B #36	ENSGT00390000000801 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000159722	ENSGT00940000153189.B #7	ENSGT00390000003590 #8	ENSGT00390000015228 #9	ENSGT00390000011295.a #10	ENSGT00390000010316.k #11	ENSGT00530000064199 #13	ENSGT00940000160319 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #31	ENSGT00500000044939 #32	ENSGT00940000156089.l ##33	ENSGT00940000156552 #34	ENSGT00530000063873.A #35	ENSGT00530000063873.B #36	ENSGT00390000000801 #37
Mouse	MODERN SPECIES		Ppil3 (ENSMUSG00000026035) #7	Nif3l1 (ENSMUSG00000026036) #8	Orc2 (ENSMUSG00000026037) #9	Hycc2 (ENSMUSG00000038174) #10	Ndufb3 (ENSMUSG00000026032) #11	Flacc1 (ENSMUSG00000047528) #12	Cflar (ENSMUSG00000026031) #13	Casp8 (ENSMUSG00000026029) #14	Trak2 (ENSMUSG00000026028) #15	Stradb (ENSMUSG00000026027) #16	C2cd6 (ENSMUSG00000072295) #17	Tmem237 (ENSMUSG00000038079) #18	Mpp4 (ENSMUSG00000079550) #19	Als2 (ENSMUSG00000026024) #20	Cdk15 (ENSMUSG00000026023) #21	Fzd7 (ENSMUSG00000041075) #22	Gm973 (ENSMUSG00000047361) #23	Sumo1 (ENSMUSG00000026021) #24	Nop58 (ENSMUSG00000026020) #25	Bmpr2 (ENSMUSG00000067336) #26	Fam117b (ENSMUSG00000041040) #27	Ica1l (ENSMUSG00000026018) #28	Wdr12 (ENSMUSG00000026019) #29	Carf (ENSMUSG00000026017) #30	Nbeal1 (ENSMUSG00000073664) #31	Cyp20a1 (ENSMUSG00000049439) #32	Abi2 (ENSMUSG00000026782) #33	Raph1 (ENSMUSG00000026014) #34	Cd28 (ENSMUSG00000026012) #35	Ctla4 (ENSMUSG00000026011) #36	Icos (ENSMUSG00000026009) #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000159722	ENSGT00940000153189.B #7	ENSGT00390000003590 #8	ENSGT00390000015228 #9	ENSGT00390000011295.a #10	ENSGT00390000010316.k #11	ENSGT00530000064199 #13	ENSGT00940000160319 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #31	ENSGT00500000044939 #32	ENSGT00940000156089.l ##33	ENSGT00940000156552 #34	ENSGT00530000063873.A #35	ENSGT00530000063873.B #36	ENSGT00390000000801 #37
Steppe mouse	MODERN SPECIES	44									Trak2 (ENSMSIG00000008206) #15	Stradb (ENSMSIG00000008262) #16	C2cd6 (ENSMSIG00000008310) #17	Tmem237 (ENSMSIG00000008413) #18	Mpp4 (ENSMSIG00000008670) #19	Als2 (ENSMSIG00000009450) #20	Cdk15 (ENSMSIG00000009531) #21	Fzd7 (ENSMSIG00000009593) #22	Gm973 (ENSMSIG00000009601) #23	ENSMSIG00000009835 #24	Nop58 (ENSMSIG00000009865) #25	Bmpr2 (ENSMSIG00000009989) #26	Fam117b (ENSMSIG00000010018) #27	Ica1l (ENSMSIG00000010027) #28	Wdr12 (ENSMSIG00000010103) #29	Carf (ENSMSIG00000010210) #30	ENSMSIG00000010287	Nbeal1 (ENSMSIG00000010304) #31	Cyp20a1 (ENSMSIG00000010618) #32	ENSMSIG00000010702 ##33	Raph1 (ENSMSIG00000010756) #34	Cd28 (ENSMSIG00000011356) #35	ENSMSIG00000011370
spretus	MODERN SPECIES		Clk1 (MGP_SPRETEiJ_G0014969)	Ppil3 (MGP_SPRETEiJ_G0014970) #7	Nif3l1 (MGP_SPRETEiJ_G0014971) #8	Orc2 (MGP_SPRETEiJ_G0014972) #9	Hycc2 (MGP_SPRETEiJ_G0014973) #10	Ndufb3 (MGP_SPRETEiJ_G0014974) #11	Cflar (MGP_SPRETEiJ_G0014975) #13	Casp8 (MGP_SPRETEiJ_G0014976) #14	Trak2 (MGP_SPRETEiJ_G0014978) #15	Stradb (MGP_SPRETEiJ_G0014979) #16	MGP_SPRETEiJ_G0014980 #17	Tmem237 (MGP_SPRETEiJ_G0014981) #18	Mpp4 (MGP_SPRETEiJ_G0014982) #19	Als2 (MGP_SPRETEiJ_G0014983) #20	Cdk15 (MGP_SPRETEiJ_G0014984) #21	Fzd7 (MGP_SPRETEiJ_G0014985) #22	Gm973 (MGP_SPRETEiJ_G0014986) #23	Sumo1 (MGP_SPRETEiJ_G0014987) #24	Nop58 (MGP_SPRETEiJ_G0014988) #25	Bmpr2 (MGP_SPRETEiJ_G0014989) #26	MGP_SPRETEiJ_G0014990 ##27	Ica1l (MGP_SPRETEiJ_G0014991) #28	Wdr12 (MGP_SPRETEiJ_G0014992) #29	Carf (MGP_SPRETEiJ_G0014993) #30	Nbeal1 (MGP_SPRETEiJ_G0014994) #31	Cyp20a1 (MGP_SPRETEiJ_G0014995) #32	Abi2 (MGP_SPRETEiJ_G0014996) ##33	Raph1 (MGP_SPRETEiJ_G0014997) #34	Cd28 (MGP_SPRETEiJ_G0014998) #35	Ctla4 (MGP_SPRETEiJ_G0014999) #36	Icos (MGP_SPRETEiJ_G0015000) #37
Ryukyu mouse	MODERN SPECIES		Clk1 (MGP_CAROLIEiJ_G0014163)	Ppil3 (MGP_CAROLIEiJ_G0014164) #7	Nif3l1 (MGP_CAROLIEiJ_G0014165) #8	Orc2 (MGP_CAROLIEiJ_G0014166) #9	Hycc2 (MGP_CAROLIEiJ_G0014167) #10	Ndufb3 (MGP_CAROLIEiJ_G0014168) #11	Cflar (MGP_CAROLIEiJ_G0014169) #13	Casp8 (MGP_CAROLIEiJ_G0014170) #14	Trak2 (MGP_CAROLIEiJ_G0014171) #15	Stradb (MGP_CAROLIEiJ_G0014172) #16	MGP_CAROLIEiJ_G0014173 #17	Tmem237 (MGP_CAROLIEiJ_G0014174) #18	Mpp4 (MGP_CAROLIEiJ_G0014175) #19	Als2 (MGP_CAROLIEiJ_G0014176) #20	Cdk15 (MGP_CAROLIEiJ_G0014177) #21	Fzd7 (MGP_CAROLIEiJ_G0014178) #22	Gm973 (MGP_CAROLIEiJ_G0014179) #23	Sumo1 (MGP_CAROLIEiJ_G0014180) #24	Nop58 (MGP_CAROLIEiJ_G0014181) #25	Bmpr2 (MGP_CAROLIEiJ_G0014182) #26	Fam117b (MGP_CAROLIEiJ_G0014183) #27	MGP_CAROLIEiJ_G0014184 #28	MGP_CAROLIEiJ_G0014185	Carf (MGP_CAROLIEiJ_G0014186) #30	Nbeal1 (MGP_CAROLIEiJ_G0014187) #31	Cyp20a1 (MGP_CAROLIEiJ_G0014188) #32	Abi2 (MGP_CAROLIEiJ_G0014189) #33	Raph1 (MGP_CAROLIEiJ_G0014190) #34	Cd28 (MGP_CAROLIEiJ_G0014191) #35	Ctla4 (MGP_CAROLIEiJ_G0014192) #36	Icos (MGP_CAROLIEiJ_G0014193) #37
Shrew mouse	MODERN SPECIES	18	Clk1 (MGP_PahariEiJ_G0027401)	Ppil3 (MGP_PahariEiJ_G0027402) #7	Nif3l1 (MGP_PahariEiJ_G0027403) #8	Orc2 (MGP_PahariEiJ_G0027404) #9	Hycc2 (MGP_PahariEiJ_G0027405) #10	Ndufb3 (MGP_PahariEiJ_G0027406) #11	Cflar (MGP_PahariEiJ_G0027407) #13	Casp8 (MGP_PahariEiJ_G0027408) #14	Trak2 (MGP_PahariEiJ_G0027409) #15	Stradb (MGP_PahariEiJ_G0027410) #16	MGP_PahariEiJ_G0027411 #17	Tmem237 (MGP_PahariEiJ_G0027412) #18	Mpp4 (MGP_PahariEiJ_G0027413) #19	Als2 (MGP_PahariEiJ_G0027414) #20	Cdk15 (MGP_PahariEiJ_G0027415) #21	Fzd7 (MGP_PahariEiJ_G0027416) #22	Gm973 (MGP_PahariEiJ_G0027417) #23	MGP_PahariEiJ_G0027418 #24	Nop58 (MGP_PahariEiJ_G0027419) #25	Bmpr2 (MGP_PahariEiJ_G0027420) #26	Fam117b (MGP_PahariEiJ_G0027421) #27	MGP_PahariEiJ_G0027422 #28	MGP_PahariEiJ_G0027423 #29	Carf (MGP_PahariEiJ_G0027424) #30	MGP_PahariEiJ_G0027425 #31	Cyp20a1 (MGP_PahariEiJ_G0027426) #32	Abi2 (MGP_PahariEiJ_G0027427) #33	Raph1 (MGP_PahariEiJ_G0027428) #34	Cd28 (MGP_PahariEiJ_G0027429) #35	Ctla4 (MGP_PahariEiJ_G0027430) #36	MGP_PahariEiJ_G0027431 #37
Rat	MODERN SPECIES	19	Orc2 (ENSRNOG00000012558) #9	Hycc2 (ENSRNOG00000025079) #10	Ndufb3 (ENSRNOG00000011825) #11	Cflar (ENSRNOG00000012473) #13	Casp8 (ENSRNOG00000012331) #14	Flacc1 (ENSRNOG00000024917) #12	Trak2 (ENSRNOG00000010881) #15	Stradb (ENSRNOG00000010728) #16	C2cd6 (ENSRNOG00000012637) #17	Tmem237 (ENSRNOG00000024085) #18	Mpp4 (ENSRNOG00000010486) #19	LOC120094797 (ENSRNOG00000032860)	Als2 (ENSRNOG00000023280) #20	AABR07067814.1 (ENSRNOG00000032289)	Cdk15 (ENSRNOG00000022899) #21	Fzd7 (ENSRNOG00000016119) #22	RGD1562029 (ENSRNOG00000022723) #23	Sumo1 (ENSRNOG00000016133) #24	Nop58 (ENSRNOG00000016486) #25	Bmpr2 (ENSRNOG00000022196) #26	ENSRNOG00000066953	LOC301444 (ENSRNOG00000019107)	Fam117b (ENSRNOG00000022066) #27	Ica1l (ENSRNOG00000017258) #28	Wdr12 (ENSRNOG00000017340) #29	Carf (ENSRNOG00000017491) #30	Nbeal1 (ENSRNOG00000021525) #31	Cyp20a1 (ENSRNOG00000017631) #32	Abi2 (ENSRNOG00000017707) #33	Raph1 (ENSRNOG00000014722) #34	Cd28 (ENSRNOG00000010283) #35