Percora_a	ANCESTRAL SPECIES	5	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00910000148331	ENSGT00390000011295.a #8	ENSGT00390000010316.w #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37	ENSGT00390000000801
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000153189.B	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37	ENSGT00390000000801
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000153189.B	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37	ENSGT00390000000801
Goat	MODERN SPECIES	11	ORC2 (ENSCHIG00000021629) #7	HYCC2 (ENSCHIG00000016483) #8	NDUFB3 (ENSCHIG00000022914) #9	ENSCHIG00000017826 #10	CFLAR (ENSCHIG00000016459) #11	ENSCHIG00000003629 #12	CASP8 (ENSCHIG00000019146) #13	FLACC1 (ENSCHIG00000022026) #14	TRAK2 (ENSCHIG00000026628) #15	STRADB (ENSCHIG00000015673) #16	ENSCHIG00000024118 #17	TMEM237 (ENSCHIG00000025303) #18	MPP4 (ENSCHIG00000018210) #19	ALS2 (ENSCHIG00000023750) #20	CDK15 (ENSCHIG00000009588) #21	FZD7 (ENSCHIG00000026310) #22	KIAA2012 (ENSCHIG00000014714) #23	ENSCHIG00000008668 #24	NOP58 (ENSCHIG00000025013) #25	BMPR2 (ENSCHIG00000020243) #26	FAM117B (ENSCHIG00000014630) #27	ICA1L (ENSCHIG00000013077) #28	WDR12 (ENSCHIG00000009469) #29	CARF (ENSCHIG00000023655) #30	ENSCHIG00000016764 #31	NBEAL1 (ENSCHIG00000000921) #32	CYP20A1 (ENSCHIG00000022946) #33	ABI2 (ENSCHIG00000002652) #34	RAPH1 (ENSCHIG00000025930) #35	CD28 (ENSCHIG00000024564) #36	CTLA4 (ENSCHIG00000008042) #37
Rambouillet Sheep	MODERN SPECIES	11	NIF3L1 (ENSOARG00020016593)	ORC2 (ENSOARG00020016740) #7	FAM126B (ENSOARG00020016858) #8	NDUFB3 (ENSOARG00020017061) #9	NDUFB3 (ENSOARG00020017109) #9	ENSOARG00020017157 #11	CASP8 (ENSOARG00020017221) #13	FLACC1 (ENSOARG00020017518) #14	TRAK2 (ENSOARG00020017672) #15	STRADB (ENSOARG00020017965) #16	ENSOARG00020018022 #17	TMEM237 (ENSOARG00020018644) #18	MPP4 (ENSOARG00020018870) #19	ALS2 (ENSOARG00020022676) #20	CDK15 (ENSOARG00020022852) #21	FZD7 (ENSOARG00020023182) #22	KIAA2012 (ENSOARG00020023194) #23	SUMO1 (ENSOARG00020023283) #24	NOP58 (ENSOARG00020023408) #25	BMPR2 (ENSOARG00020006563) #26	FAM117B (ENSOARG00020006688) #27	ICA1L (ENSOARG00020006778) #28	WDR12 (ENSOARG00020006896) #29	CARF (ENSOARG00020006968) #30	NBEAL1 (ENSOARG00020007440) #32	CYP20A1 (ENSOARG00020007538) #33	ABI2 (ENSOARG00020007596) #34	RAPH1 (ENSOARG00020007863) #35	ENSOARG00020008167	CD28 (ENSOARG00020008197) #36	CTLA4 (ENSOARG00020008302) #37
Bovinae	ANCESTRAL SPECIES	5	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w.c #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000157458.c ##12	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37	ENSGT00390000000801
Bos	ANCESTRAL SPECIES	6	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w.c #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000157458.c ##12	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w.c #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000157458.c ##12	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37
Hybrid Bos Indicus	MODERN SPECIES	11	NIF3L1 (ENSBIXG00005031554)	ORC2 (ENSBIXG00005031555) #7	HYCC2 (ENSBIXG00005031556) #8	ENSBIXG00005031558 #9	CFLAR (ENSBIXG00005031559) #11	FLACC1 (ENSBIXG00005031561) #14	CASP8 (ENSBIXG00005031562) #13	ENSBIXG00005031563 ##12	TRAK2 (ENSBIXG00005031564) #15	STRADB (ENSBIXG00005031565) #16	ENSBIXG00005031566 #17	TMEM237 (ENSBIXG00005031567) #18	MPP4 (ENSBIXG00005031568) #19	ALS2 (ENSBIXG00005031570) #20	CDK15 (ENSBIXG00005031571) #21	FZD7 (ENSBIXG00005031573) #22	KIAA2012 (ENSBIXG00005031574) #23	ENSBIXG00005031575 #24	NOP58 (ENSBIXG00005031577) #25	BMPR2 (ENSBIXG00005031582) #26	FAM117B (ENSBIXG00005031583) #27	ICA1L (ENSBIXG00005031584) #28	WDR12 (ENSBIXG00005031585) #29	CARF (ENSBIXG00005031586) #30	ENSBIXG00005031587	NBEAL1 (ENSBIXG00005031588) #32	CYP20A1 (ENSBIXG00005031589) #33	ABI2 (ENSBIXG00005031590) #34	RAPH1 (ENSBIXG00005031591) #35	CD28 (ENSBIXG00005031593) #36	CTLA4 (ENSBIXG00005031594) #37
Cow	MODERN SPECIES	11	PPIL3 (ENSBTAG00000005416)	NIF3L1 (ENSBTAG00000018282)	ORC2 (ENSBTAG00000031473) #7	HYCC2 (ENSBTAG00000021201) #8	NDUFB3 (ENSBTAG00000012760) #9	CFLAR (ENSBTAG00000010998) #11	CASP8 (ENSBTAG00000015718) #13	FLACC1 (ENSBTAG00000012334) #14	TRAK2 (ENSBTAG00000014933) #15	STRADB (ENSBTAG00000019298) #16	C2CD6 (ENSBTAG00000017436) #17	TMEM237 (ENSBTAG00000017437) #18	MPP4 (ENSBTAG00000052816) #19	ALS2 (ENSBTAG00000007395) #20	CDK15 (ENSBTAG00000055073) #21	FZD7 (ENSBTAG00000002283) #22	KIAA2012 (ENSBTAG00000034192) #23	SUMO1 (ENSBTAG00000049402) #24	NOP58 (ENSBTAG00000005517) #25	BMPR2 (ENSBTAG00000006420) #26	FAM117B (ENSBTAG00000048876) #27	ICA1L (ENSBTAG00000008673) #28	WDR12 (ENSBTAG00000015424) #29	ENSBTAG00000053168	CARF (ENSBTAG00000016000) #30	ENSBTAG00000019994	NBEAL1 (ENSBTAG00000014469) #32	CYP20A1 (ENSBTAG00000000851) #33	ABI2 (ENSBTAG00000011017) #34	RAPH1 (ENSBTAG00000027201) #35	CD28 (ENSBTAG00000007445) #36
Bos_a	ANCESTRAL SPECIES	4	ENSGT00390000003590	ENSGT00390000015228 #7	ENSGT00390000011295.a #8	ENSGT00390000010316.w.c #9	ENSGT00530000064199 #11	ENSGT00940000160319 #13	ENSGT00400000022323 #14	ENSGT00940000157458.c ##12	ENSGT00940000158202 #15	ENSGT00940000155390 #16	ENSGT00390000018209 #17	ENSGT00390000005159 #18	ENSGT00940000156444 #19	ENSGT00940000155861.C #20	ENSGT00940000159606 #21	ENSGT00940000158239.b #22	ENSGT00860000133854 #23	ENSGT00940000154319.v.cb #24	ENSGT00940000153534.A #25	ENSGT00940000156449 #26	ENSGT00950000183046.a.a #27	ENSGT00390000005530.a.a #28	ENSGT00930000150950.b #29	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.b.b.b.a	ENSGT00390000013916 #30	ENSGT00940000155041 #32	ENSGT00500000044939 #33	ENSGT00940000156089 #34	ENSGT00940000156552 #35	ENSGT00530000063873.A #36	ENSGT00530000063873.B #37
Domestic yak	MODERN SPECIES	11	ENSBGRG00000022748 #9	ENSBGRG00000022737	CFLAR (ENSBGRG00000022578) #11	ENSBGRG00000022548	ENSBGRG00000022534	CASP8 (ENSBGRG00000022436) #13	ENSBGRG00000022390 ##12	FLACC1 (ENSBGRG00000022275) #14	TRAK2 (ENSBGRG00000022201) #15	STRADB (ENSBGRG00000022109) #16	ENSBGRG00000021802 #17	TMEM237 (ENSBGRG00000021384) #18	MPP4 (ENSBGRG00000018555) #19	ALS2 (ENSBGRG00000018345) #20	CDK15 (ENSBGRG00000018223) #21	FZD7 (ENSBGRG00000018191) #22	KIAA2012 (ENSBGRG00000018013) #23	ENSBGRG00000017875 #24	NOP58 (ENSBGRG00000017588) #25	BMPR2 (ENSBGRG00000017354) #26	ENSBGRG00000017311	FAM117B (ENSBGRG00000017110) #27	ICA1L (ENSBGRG00000016892) #28	WDR12 (ENSBGRG00000016744) #29	ENSBGRG00000016729	CARF (ENSBGRG00000016286) #30	ENSBGRG00000016261	NBEAL1 (ENSBGRG00000016043) #32	CYP20A1 (ENSBGRG00000015562) #33	ABI2 (ENSBGRG00000014834) #34	ENSBGRG00000012733 #35
Wild yak	MODERN SPECIES	1623						CASP8 (ENSBMUG00000016946) #13	FLACC1 (ENSBMUG00000016974) #14	ENSBMUG00000016979 ##12	TRAK2 (ENSBMUG00000016996) #15	STRADB (ENSBMUG00000017010) #16	ENSBMUG00000017038 #17	TMEM237 (ENSBMUG00000017070) #18	MPP4 (ENSBMUG00000017529) #19	ALS2 (ENSBMUG00000017587) #20	CDK15 (ENSBMUG00000017707) #21	FZD7 (ENSBMUG00000017750) #22	KIAA2012 (ENSBMUG00000017856) #23	ENSBMUG00000017957	NOP58 (ENSBMUG00000017992) #25	BMPR2 (ENSBMUG00000018053) #26	ENSBMUG00000018077 #27	ENSBMUG00000018084 #27	ICA1L (ENSBMUG00000018119) #28	WDR12 (ENSBMUG00000018135) #29	CARF (ENSBMUG00000018245) #30	NBEAL1 (ENSBMUG00000018435) #32	CYP20A1 (ENSBMUG00000018465) #33	ABI2 (ENSBMUG00000018557) #34	ENSBMUG00000018823 #35	CD28 (ENSBMUG00000018899) #36	CTLA4 (ENSBMUG00000018913) #37
Siberian musk deer	MODERN SPECIES	351	PPIL3 (ENSMMSG00000024329)	NIF3L1 (ENSMMSG00000024332)	ORC2 (ENSMMSG00000024335) #7	ENSMMSG00000024336	HYCC2 (ENSMMSG00000024338) #8	NDUFB3 (ENSMMSG00000010949) ##9	CFLAR (ENSMMSG00000010965) #11	CASP8 (ENSMMSG00000011027) #13	FLACC1 (ENSMMSG00000011224) #14	TRAK2 (ENSMMSG00000011295) #15	STRADB (ENSMMSG00000011336) #16	TMEM237 (ENSMMSG00000011381) #18	MPP4 (ENSMMSG00000011618) #19	ALS2 (ENSMMSG00000014494) #20	CDK15 (ENSMMSG00000014595) #21	FZD7 (ENSMMSG00000014860) #22	KIAA2012 (ENSMMSG00000014878) #23	ENSMMSG00000014944 #24	ENSMMSG00000015014 #25	BMPR2 (ENSMMSG00000015064) #26	FAM117B (ENSMMSG00000015175) #27	ICA1L (ENSMMSG00000015216) #28	WDR12 (ENSMMSG00000015269) #29	CARF (ENSMMSG00000015323) #30	NBEAL1 (ENSMMSG00000015534) #32	CYP20A1 (ENSMMSG00000015574) #33	ABI2 (ENSMMSG00000015631) #34	RAPH1 (ENSMMSG00000015916) #35