Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000014963	ENSGT00390000008346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT01030000235076	ENSGT00940000157949.c.b #36
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000008346	ENSGT00390000018318.u.b.a.a	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT01030000235076	ENSGT00940000157949.c.b #36
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000018318.u.b.a.a	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00940000154349.fb.b #9	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358.l.a #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT00940000157949.c.b #36	ENSGT00940000156247 #37	ENSGT00940000159709
Goat	MODERN SPECIES	25	LIMCH1 (ENSCHIG00000017113) #7	UCHL1 (ENSCHIG00000019061) #8	ENSCHIG00000010597 #9	APBB2 (ENSCHIG00000024058) #10	NSUN7 (ENSCHIG00000015126) #11	RBM47 (ENSCHIG00000026214) #12	CHRNA9 (ENSCHIG00000017361) #13	RHOH (ENSCHIG00000007476) #14	ENSCHIG00000003545 #15	N4BP2 (ENSCHIG00000019740) #16	ENSCHIG00000002503 #17	ENSCHIG00000017584 #18	PDS5A (ENSCHIG00000026126) #19	UBE2K (ENSCHIG00000017033) #20	SMIM14 (ENSCHIG00000025451) #21	UGDH (ENSCHIG00000024923) #22	LIAS (ENSCHIG00000014912) #23	ENSCHIG00000011416 #24	KLB (ENSCHIG00000024250) #25	RFC1 (ENSCHIG00000019925) #26	WDR19 (ENSCHIG00000013702) #27	ENSCHIG00000017310 #28	ENSCHIG00000024874 #29	ENSCHIG00000012341 #30	TMEM156 (ENSCHIG00000012783) #31	FAM114A1 (ENSCHIG00000022521) #32	TLR6 (ENSCHIG00000022377) #33	TLR10 (ENSCHIG00000010004) #34	KLF3 (ENSCHIG00000023066) #35	ENSCHIG00000008333 #36	PGM2 (ENSCHIG00000015657) #37
Rambouillet Sheep	MODERN SPECIES	22	LIMCH1 (ENSOARG00020024678) #7	UCHL1 (ENSOARG00020024561) #8	ENSOARG00020024542 #9	APBB2 (ENSOARG00020024292) #10	NSUN7 (ENSOARG00020024204) #11	RBM47 (ENSOARG00020024160) #12	CHRNA9 (ENSOARG00020024145) #13	RHOH (ENSOARG00020024134) #14	ENSOARG00020024115 #16	ENSOARG00020024105	ENSOARG00020024089	ENSOARG00020024081	PDS5A (ENSOARG00020024026) #19	UBE2K (ENSOARG00020023978) #20	SMIM14 (ENSOARG00020023943) #21	UGDH (ENSOARG00020023884) #22	LIAS (ENSOARG00020023685) #23	RPL9 (ENSOARG00020023606) #24	KLB (ENSOARG00020023555) #25	RFC1 (ENSOARG00020023327) #26	WDR19 (ENSOARG00020023069) #27	KLHL5 (ENSOARG00020022757) #29	TMEM156 (ENSOARG00020022716) #31	FAM114A1 (ENSOARG00020022672) #32	KLF3 (ENSOARG00020022589) #35	TBC1D1 (ENSOARG00020022096) ##36	PGM2 (ENSOARG00020022008) #37	RELL1 (ENSOARG00020021988)	C6H4orf19 (ENSOARG00020021966)	NWD2 (ENSOARG00020021937)	DTHD1 (ENSOARG00020021575)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000008346	ENSGT00390000018318.u.b.a.a	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT01030000235076	ENSGT00940000156247 #37
Bos	ANCESTRAL SPECIES	15	ENSGT00390000008346	ENSGT00390000018318.u.b.a.a	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a.c #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT01030000235076	ENSGT00940000156247 #37
Bos_a	ANCESTRAL SPECIES	21	ENSGT00390000014963	ENSGT00390000008346	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a.c #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.b #36	ENSGT00940000157949.c.a ##36	ENSGT01030000235076
Wild yak	MODERN SPECIES	895	AGR3 (ENSBMUG00000020436)	AGR2 (ENSBMUG00000020421)	TSPAN13 (ENSBMUG00000020392)	BZW2 (ENSBMUG00000020370)	ANKMY2 (ENSBMUG00000020338)	LRRC72 (ENSBMUG00000020320)	SOSTDC1 (ENSBMUG00000020289)	CRPPA (ENSBMUG00000020267)	ENSBMUG00000020247	MEOX2 (ENSBMUG00000020230)	AGMO (ENSBMUG00000020224)	DGKB (ENSBMUG00000020164)	ETV1 (ENSBMUG00000020038)	ENSBMUG00000019942	SMIM14 (ENSBMUG00000019929) #21	UGDH (ENSBMUG00000019895) #22	LIAS (ENSBMUG00000019802) #23	ENSBMUG00000019692 ##24	KLB (ENSBMUG00000019680) #25	RFC1 (ENSBMUG00000019633) #26	WDR19 (ENSBMUG00000019534) #27	KLHL5 (ENSBMUG00000019450) #29	TMEM156 (ENSBMUG00000019375) #31	FAM114A1 (ENSBMUG00000019349) #32	TLR6 (ENSBMUG00000019289) #33	TLR1 (ENSBMUG00000019266)	KLF3 (ENSBMUG00000019245) #35
Domestic yak	MODERN SPECIES	25	LIMCH1 (ENSBGRG00000002320) #7	UCHL1 (ENSBGRG00000002608) #8	ENSBGRG00000002669	APBB2 (ENSBGRG00000002693) #10	ENSBGRG00000002737	NSUN7 (ENSBGRG00000002761) #11	RBM47 (ENSBGRG00000002798) #12	CHRNA9 (ENSBGRG00000002828) #13	RHOH (ENSBGRG00000002839) #14	N4BP2 (ENSBGRG00000002859) #16	ENSBGRG00000002884	PDS5A (ENSBGRG00000002901) #19	UBE2K (ENSBGRG00000002976) #20	ENSBGRG00000003067	SMIM14 (ENSBGRG00000003070) #21	UGDH (ENSBGRG00000003085) #22	LIAS (ENSBGRG00000003188) #23	ENSBGRG00000003539 #24	KLB (ENSBGRG00000003576) #25	RFC1 (ENSBGRG00000003610) #26	WDR19 (ENSBGRG00000003750) #27	KLHL5 (ENSBGRG00000004023) #29	TMEM156 (ENSBGRG00000004170) #31	FAM114A1 (ENSBGRG00000004223) #32	TLR6 (ENSBGRG00000004251) #33	TLR1 (ENSBGRG00000004271)	TLR10 (ENSBGRG00000004282) #34	KLF3 (ENSBGRG00000004311) #35	ENSBGRG00000004364 #36	ENSBGRG00000004393 ##36	ENSBGRG00000004450
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000018318.u.b.a.a	ENSGT00390000011368	ENSGT00940000159958	ENSGT00950000183159.a #7	ENSGT00940000157306 #8	ENSGT00390000000002.a.a.a #10	ENSGT00940000157352 #11	ENSGT00940000156979 #12	ENSGT00940000156077 #13	ENSGT00940000160078 #14	ENSGT01100000263480.a.b.b.a.b.b.a.a.a.b.a.a	ENSGT00940000160604 #16	ENSGT00940000155155 #19	ENSGT00670000098059 #20	ENSGT00390000018294 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.a.a.a.t.a.a.c #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #29	ENSGT00390000017929 #31	ENSGT00390000010054.b #32	ENSGT00940000162201 #33	ENSGT00940000162884	ENSGT00940000163662 #34	ENSGT00940000157456 #35	ENSGT00940000157949.c.a ##36	ENSGT00960000191194	ENSGT00940000156247 #37
Hybrid Bos Indicus	MODERN SPECIES	25	SLC30A9 (ENSBIXG00005006425)	TMEM33 (ENSBIXG00005012025)	PHOX2B (ENSBIXG00005012048)	LIMCH1 (ENSBIXG00005000345) #7	UCHL1 (ENSBIXG00005012562) #8	ENSBIXG00005012590	APBB2 (ENSBIXG00005012724) #10	NSUN7 (ENSBIXG00005012787) #11	RBM47 (ENSBIXG00005001444) #12	CHRNA9 (ENSBIXG00005012942) #13	ENSBIXG00005001461	N4BP2 (ENSBIXG00005012999) #16	PDS5A (ENSBIXG00005013229) #19	ENSBIXG00005013289 #20	SMIM14 (ENSBIXG00005013329) #21	UGDH (ENSBIXG00005007485) #22	LIAS (ENSBIXG00005006804) #23	ENSBIXG00005013495 #24	KLB (ENSBIXG00005001629) #25	RFC1 (ENSBIXG00005001653) #26	WDR19 (ENSBIXG00005013631) #27	ENSBIXG00005001670	KLHL5 (ENSBIXG00005001689) #29	TMEM156 (ENSBIXG00005013809) #31	FAM114A1 (ENSBIXG00005013840) #32	TLR6 (ENSBIXG00005013851) #33	TLR1 (ENSBIXG00005013874)	TLR10 (ENSBIXG00005013883) #34	KLF3 (ENSBIXG00005013914) #35	TBC1D1 (ENSBIXG00005006366) ##36	ENSBIXG00005001823
Cow	MODERN SPECIES	25	TMEM33 (ENSBTAG00000043958)	PHOX2B (ENSBTAG00000044166)	ENSBTAG00000051208	LIMCH1 (ENSBTAG00000010677) #7	UCHL1 (ENSBTAG00000005078) #8	APBB2 (ENSBTAG00000027569) #10	NSUN7 (ENSBTAG00000001572) #11	RBM47 (ENSBTAG00000002356) #12	CHRNA9 (ENSBTAG00000015252) #13	RHOH (ENSBTAG00000013451) #14	ENSBTAG00000049669	N4BP2 (ENSBTAG00000000175) #16	PDS5A (ENSBTAG00000017809) #19	UBE2K (ENSBTAG00000020175) #20	SMIM14 (ENSBTAG00000014522) #21	UGDH (ENSBTAG00000014521) #22	LIAS (ENSBTAG00000014520) #23	RPL9 (ENSBTAG00000014518) #24	KLB (ENSBTAG00000014517) #25	RFC1 (ENSBTAG00000014515) #26	WDR19 (ENSBTAG00000014512) #27	KLHL5 (ENSBTAG00000006044) #29	TMEM156 (ENSBTAG00000015649) #31	ENSBTAG00000055220 #32	FAM114A1 (ENSBTAG00000033160) #32	TLR6 (ENSBTAG00000014031) #33	TLR10 (ENSBTAG00000014042) #34	KLF3 (ENSBTAG00000017488) #35	TBC1D1 (ENSBTAG00000013699) ##36	ENSBTAG00000052370	PGM2 (ENSBTAG00000005773) #37
American bison	MODERN SPECIES	2904													PDS5A (ENSBBBG00000002776) #19	UBE2K (ENSBBBG00000015119) #20	SMIM14 (ENSBBBG00000015086) #21	UGDH (ENSBBBG00000015077) #22	LIAS (ENSBBBG00000015037) #23	ENSBBBG00000000823 #24	KLB (ENSBBBG00000000872) #25	ENSBBBG00000000884 #26	ENSBBBG00000000893 #26	WDR19 (ENSBBBG00000000906) #27	KLHL5 (ENSBBBG00000000987) #29	TMEM156 (ENSBBBG00000001075) #31	FAM114A1 (ENSBBBG00000001087) #32	TLR6 (ENSBBBG00000001113) #33	TLR1 (ENSBBBG00000001122)	TLR10 (ENSBBBG00000001131) #34	KLF3 (ENSBBBG00000001145) #35
Siberian musk deer	MODERN SPECIES	1268	ENSMMSG00000023627	TMEM33 (ENSMMSG00000023632)	PHOX2B (ENSMMSG00000023639)	LIMCH1 (ENSMMSG00000023686) #7	UCHL1 (ENSMMSG00000023900) #8	APBB2 (ENSMMSG00000023923) #10	RBM47 (ENSMMSG00000023957) #12	CHRNA9 (ENSMMSG00000023965) #13	RHOH (ENSMMSG00000023968) #14	N4BP2 (ENSMMSG00000023971) #16	PDS5A (ENSMMSG00000023983) #19	UBE2K (ENSMMSG00000023998) #20	ENSMMSG00000024015	ENSMMSG00000024027 #21	ENSMMSG00000024033	UGDH (ENSMMSG00000024036) #22	LIAS (ENSMMSG00000024047) #23	RPL9 (ENSMMSG00000024067) #24	KLB (ENSMMSG00000024074) #25	ENSMMSG00000024077 #26	WDR19 (ENSMMSG00000024087) #27	KLHL5 (ENSMMSG00000024102) #29	TMEM156 (ENSMMSG00000024118) #31	FAM114A1 (ENSMMSG00000024129) #32	ENSMMSG00000024141 #33	ENSMMSG00000024143	TLR10 (ENSMMSG00000024146) #34	KLF3 (ENSMMSG00000024147) #35	TBC1D1 (ENSMMSG00000024155) ##36	ENSMMSG00000024181	PGM2 (ENSMMSG00000024185) #37