Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000159958 #8	ENSGT00990000212839	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979 #13	ENSGT00860000136006 #14	ENSGT00940000156077 #15	ENSGT00940000160078 #16	ENSGT00940000160604 #17	ENSGT00940000155155 #18	ENSGT00670000098059.q #19	ENSGT00390000018294 #20	ENSGT00940000166010 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.b.a.k.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #28	ENSGT00390000017929 #29	ENSGT00390000010054.b #30	ENSGT00940000162201 #31	ENSGT00940000162884	ENSGT00940000157456 #32	ENSGT00940000157949 #33	ENSGT00940000156247 #34	ENSGT00940000159709 #35	ENSGT00390000013778 #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000159958 #8	ENSGT00990000212839	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979 #13	ENSGT00860000136006 #14	ENSGT00940000156077 #15	ENSGT00940000160078 #16	ENSGT00940000160604 #17	ENSGT00940000155155 #18	ENSGT00670000098059.q #19	ENSGT00390000018294 #20	ENSGT00940000166010 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.b.a.k.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #28	ENSGT00390000017929 #29	ENSGT00390000010054.b #30	ENSGT00940000162201 #31	ENSGT00940000162884	ENSGT00940000157456 #32	ENSGT00940000157949 #33	ENSGT00940000156247 #34	ENSGT00940000159709 #35	ENSGT00390000013778 #36
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000159958 #8	ENSGT00990000212839	ENSGT00950000183159.a #9	ENSGT00940000157306 #10	ENSGT00390000000002.a.a.a #11	ENSGT00940000157352 #12	ENSGT00940000156979 #13	ENSGT00860000136006 #14	ENSGT00940000156077 #15	ENSGT00940000160078 #16	ENSGT00940000160604 #17	ENSGT00940000155155 #18	ENSGT00670000098059.q #19	ENSGT00390000018294 #20	ENSGT00940000166010 #21	ENSGT00390000015355 #22	ENSGT00390000006234 #23	ENSGT00390000015224.c.b.a.k.a.a #24	ENSGT00940000157489 #25	ENSGT00730000111066 #26	ENSGT00590000083165 #27	ENSGT00940000155358 #28	ENSGT00390000017929 #29	ENSGT00390000010054.b #30	ENSGT00940000162201 #31	ENSGT00940000162884	ENSGT00940000157456 #32	ENSGT00940000157949 #33	ENSGT00940000156247 #34	ENSGT00940000159709 #35	ENSGT00390000013778 #36
spretus	MODERN SPECIES	14	Tmem33 (MGP_SPRETEiJ_G0028259) #7	Phox2b (MGP_SPRETEiJ_G0028258) #8	MGP_SPRETEiJ_G0028257 #9	Uchl1 (MGP_SPRETEiJ_G0028256) #10	Apbb2 (MGP_SPRETEiJ_G0028255) #11	Nsun7 (MGP_SPRETEiJ_G0028254) #12	Rbm47 (MGP_SPRETEiJ_G0028253) #13	MGP_SPRETEiJ_G0028252 #14	Chrna9 (MGP_SPRETEiJ_G0028251) #15	Rhoh (MGP_SPRETEiJ_G0028250) #16	N4bp2 (MGP_SPRETEiJ_G0028249) #17	Pds5a (MGP_SPRETEiJ_G0028248) #18	Ube2k (MGP_SPRETEiJ_G0028247) #19	Smim14 (MGP_SPRETEiJ_G0028246) #20	MGP_SPRETEiJ_G0028245 #21	Ugdh (MGP_SPRETEiJ_G0028244) #22	Lias (MGP_SPRETEiJ_G0028243) #23	MGP_SPRETEiJ_G0028242 #24	Klb (MGP_SPRETEiJ_G0028241) #25	Rfc1 (MGP_SPRETEiJ_G0028240) #26	Wdr19 (MGP_SPRETEiJ_G0028239) #27	Klhl5 (MGP_SPRETEiJ_G0028238) #28	MGP_SPRETEiJ_G0028237 #29	Fam114a1 (MGP_SPRETEiJ_G0028236) #30	Tlr6 (MGP_SPRETEiJ_G0028235) #31	Klf3 (MGP_SPRETEiJ_G0028233) #32	Tbc1d1 (MGP_SPRETEiJ_G0028232) #33	Pgm2 (MGP_SPRETEiJ_G0028231) #34	Rell1 (MGP_SPRETEiJ_G0028230) #35	0610040J01Rik (MGP_SPRETEiJ_G0028229) #36	Nwd2 (MGP_SPRETEiJ_G0028228) #37
Steppe mouse	MODERN SPECIES	3316	ENSMSIG00000007868 #9	ENSMSIG00000008346	ENSMSIG00000008357 #10	Apbb2 (ENSMSIG00000008399) #11	Nsun7 (ENSMSIG00000009295) #12	Rbm47 (ENSMSIG00000009440) #13	ENSMSIG00000009565 #14	ENSMSIG00000009591	Chrna9 (ENSMSIG00000009604) #15	Rhoh (ENSMSIG00000009623) #16	N4bp2 (ENSMSIG00000009632) #17	Pds5a (ENSMSIG00000009696) #18	ENSMSIG00000009795 ##19	ENSMSIG00000009949 #20	ENSMSIG00000010011	Ugdh (ENSMSIG00000010023) #22	Lias (ENSMSIG00000010054) #23	ENSMSIG00000010100 #24	Klb (ENSMSIG00000010181) #25	Rfc1 (ENSMSIG00000010211) #26	Wdr19 (ENSMSIG00000010456) #27	Klhl5 (ENSMSIG00000010666) #28	Tmem156 (ENSMSIG00000010754) #29	Fam114a1 (ENSMSIG00000010803) #30	Tlr6 (ENSMSIG00000010824) #31	Tlr1 (ENSMSIG00000010831)	Klf3 (ENSMSIG00000010840) #32	ENSMSIG00000010865	Tbc1d1 (ENSMSIG00000010885) #33
Mouse	MODERN SPECIES	14	Tmem33 (ENSMUSG00000037720) #7	Phox2b (ENSMUSG00000012520) #8	Limch1 (ENSMUSG00000037736) #9	Uchl1 (ENSMUSG00000029223) #10	ENSMUSG00000121580	Apbb2 (ENSMUSG00000029207) #11	Nsun7 (ENSMUSG00000029206) #12	Rbm47 (ENSMUSG00000070780) #13	Chrna9 (ENSMUSG00000029205) #15	Rhoh (ENSMUSG00000029204) #16	N4bp2 (ENSMUSG00000037795) #17	Pds5a (ENSMUSG00000029202) #18	Ube2k (ENSMUSG00000029203) #19	Smim14 (ENSMUSG00000037822) #20	Gm43552 (ENSMUSG00000105835)	Ugdh (ENSMUSG00000029201) #22	Lias (ENSMUSG00000029199) #23	Rpl9 (ENSMUSG00000047215) #24	Klb (ENSMUSG00000029195) #25	Rfc1 (ENSMUSG00000029191) #26	Wdr19 (ENSMUSG00000037890) #27	Klhl5 (ENSMUSG00000054920) #28	Tmem156 (ENSMUSG00000037913) #29	Fam114a1 (ENSMUSG00000029185) #30	Tlr6 (ENSMUSG00000051498) #31	Tlr1 (ENSMUSG00000044827)	Klf3 (ENSMUSG00000029178) #32	Tbc1d1 (ENSMUSG00000029174) #33	Pgm2 (ENSMUSG00000029171) #34	Rell1 (ENSMUSG00000047881) #35	0610040J01Rik (ENSMUSG00000060512) #36
Ryukyu mouse	MODERN SPECIES	14	Tmem33 (MGP_CAROLIEiJ_G0027264) #7	Phox2b (MGP_CAROLIEiJ_G0027263) #8	MGP_CAROLIEiJ_G0027262 #9	Uchl1 (MGP_CAROLIEiJ_G0027261) #10	Apbb2 (MGP_CAROLIEiJ_G0027260) #11	Nsun7 (MGP_CAROLIEiJ_G0027259) #12	Rbm47 (MGP_CAROLIEiJ_G0027258) #13	MGP_CAROLIEiJ_G0027257 #14	Chrna9 (MGP_CAROLIEiJ_G0027256) #15	Rhoh (MGP_CAROLIEiJ_G0027255) #16	N4bp2 (MGP_CAROLIEiJ_G0027254) #17	Pds5a (MGP_CAROLIEiJ_G0027253) #18	Ube2k (MGP_CAROLIEiJ_G0027252) ##19	Smim14 (MGP_CAROLIEiJ_G0027251) #20	MGP_CAROLIEiJ_G0027250 #21	Ugdh (MGP_CAROLIEiJ_G0027249) #22	Lias (MGP_CAROLIEiJ_G0027248) #23	MGP_CAROLIEiJ_G0027247 ##24	Klb (MGP_CAROLIEiJ_G0027246) #25	Rfc1 (MGP_CAROLIEiJ_G0027245) #26	Wdr19 (MGP_CAROLIEiJ_G0027244) #27	Klhl5 (MGP_CAROLIEiJ_G0027243) #28	MGP_CAROLIEiJ_G0027242 #29	Fam114a1 (MGP_CAROLIEiJ_G0027241) #30	Tlr6 (MGP_CAROLIEiJ_G0027240) #31	Tlr1 (MGP_CAROLIEiJ_G0027239)	Klf3 (MGP_CAROLIEiJ_G0027238) #32	MGP_CAROLIEiJ_G0027237	Pgm2 (MGP_CAROLIEiJ_G0027236) #34	Rell1 (MGP_CAROLIEiJ_G0027235) #35	0610040J01Rik (MGP_CAROLIEiJ_G0027234) #36