Tetrapoda	ANCESTRAL SPECIES	46	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00390000006679.b #36	ENSGT01100000263525.b.a #35
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Theria	ANCESTRAL SPECIES	9	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Primates	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.q #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.q #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Marmoset	MODERN SPECIES	17	EPN3 (ENSCJAG00000018535) #7	MYCBPAP (ENSCJAG00000018762) #8	RSAD1 (ENSCJAG00000018782) #9	CHAD (ENSCJAG00000018813) #10	ENSCJAG00000045929 #11	EME1 (ENSCJAG00000018843) #12	ENSCJAG00000018851 #13	XYLT2 (ENSCJAG00000018858) #14	ENSCJAG00000073201 #15	COL1A1 (ENSCJAG00000003818) #16	SGCA (ENSCJAG00000003794) #17	PPP1R9B (ENSCJAG00000006847) #18	SAMD14 (ENSCJAG00000006872) #19	PDK2 (ENSCJAG00000006896) #20	ITGA3 (ENSCJAG00000006922) #21	DLX3 (ENSCJAG00000006990) #22	DLX4 (ENSCJAG00000054881) #23	TAC4 (ENSCJAG00000007010) #24	KAT7 (ENSCJAG00000007037) #25	FAM117A (ENSCJAG00000007066) #26	SLC35B1 (ENSCJAG00000007077) #27	SPOP (ENSCJAG00000045260) #28	NXPH3 (ENSCJAG00000047530) #29	NGFR (ENSCJAG00000048552) #30	PHB1 (ENSCJAG00000007174) #31	ZNF652 (ENSCJAG00000007206) #32	PHOSPHO1 (ENSCJAG00000047817) #33	ABI3 (ENSCJAG00000007219) #34	GNGT2 (ENSCJAG00000041153) #35	B4GALNT2 (ENSCJAG00000007247) #36	ENSCJAG00000079002 #37
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000011666.x.a	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.q #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Bolivian squirrel monkey	MODERN SPECIES	86	CHAD (ENSSBOG00000027701) #10	ACSF2 (ENSSBOG00000031032)	LRRC59 (ENSSBOG00000014866) #11	EME1 (ENSSBOG00000026480) #12	ENSSBOG00000016577 #13	XYLT2 (ENSSBOG00000033568) #14	TMEM92 (ENSSBOG00000030516) #15	ENSSBOG00000031765	COL1A1 (ENSSBOG00000005091) #16	ENSSBOG00000032392	SGCA (ENSSBOG00000035857) #17	PPP1R9B (ENSSBOG00000016072) #18	SAMD14 (ENSSBOG00000035764) #19	PDK2 (ENSSBOG00000020937) #20	ITGA3 (ENSSBOG00000019078) #21	DLX3 (ENSSBOG00000033912) #22	DLX4 (ENSSBOG00000025750) #23	TAC4 (ENSSBOG00000006746) #24	KAT7 (ENSSBOG00000031238) #25	FAM117A (ENSSBOG00000034596) #26	SLC35B1 (ENSSBOG00000032295) #27	SPOP (ENSSBOG00000031919) #28	NXPH3 (ENSSBOG00000028337) #29	NGFR (ENSSBOG00000031345) #30	ENSSBOG00000029361 #31	ZNF652 (ENSSBOG00000029507) #32	PHOSPHO1 (ENSSBOG00000031500) #33	ABI3 (ENSSBOG00000013949) #34	GNGT2 (ENSSBOG00000030712) #35	B4GALNT2 (ENSSBOG00000026556) #36	IGF2BP1 (ENSSBOG00000020973)
Capuchin	MODERN SPECIES	123	RSAD1 (ENSCCAG00000029513) #9	CHAD (ENSCCAG00000038046) #10	ENSCCAG00000036017	ACSF2 (ENSCCAG00000023167)	LRRC59 (ENSCCAG00000030588) #11	EME1 (ENSCCAG00000029143) #12	ENSCCAG00000027809 #13	XYLT2 (ENSCCAG00000013243) #14	TMEM92 (ENSCCAG00000028039) #15	COL1A1 (ENSCCAG00000021036) #16	SGCA (ENSCCAG00000021320) #17	PPP1R9B (ENSCCAG00000027982) #18	SAMD14 (ENSCCAG00000035479) #19	PDK2 (ENSCCAG00000032710) #20	ITGA3 (ENSCCAG00000036669) #21	DLX3 (ENSCCAG00000025849) #22	DLX4 (ENSCCAG00000031363) #23	TAC4 (ENSCCAG00000027771) #24	ENSCCAG00000023588 #25	FAM117A (ENSCCAG00000027827) #26	SLC35B1 (ENSCCAG00000035827) #27	SPOP (ENSCCAG00000026049) #28	NXPH3 (ENSCCAG00000027739) #29	NGFR (ENSCCAG00000032956) #30	ENSCCAG00000031356 #31	ZNF652 (ENSCCAG00000034341) #32	PHOSPHO1 (ENSCCAG00000031753) #33	ABI3 (ENSCCAG00000034155) #34	GNGT2 (ENSCCAG00000021230) #35	B4GALNT2 (ENSCCAG00000029481) #36	IGF2BP1 (ENSCCAG00000031817)
Mas night monkey	MODERN SPECIES	1105	CHAD (ENSANAG00000034092) #10	ENSANAG00000034008	ACSF2 (ENSANAG00000032214)	LRRC59 (ENSANAG00000021578) #11	EME1 (ENSANAG00000033286) #12	MRPL27 (ENSANAG00000007800) #13	XYLT2 (ENSANAG00000020010) #14	TMEM92 (ENSANAG00000028271) #15	ENSANAG00000037824	COL1A1 (ENSANAG00000028537) #16	SGCA (ENSANAG00000032567) #17	PPP1R9B (ENSANAG00000036149) #18	SAMD14 (ENSANAG00000019972) #19	PDK2 (ENSANAG00000028595) #20	ITGA3 (ENSANAG00000031435) #21	DLX3 (ENSANAG00000034222) #22	DLX4 (ENSANAG00000024696) #23	TAC4 (ENSANAG00000033329) #24	KAT7 (ENSANAG00000032052) #25	FAM117A (ENSANAG00000037059) #26	SLC35B1 (ENSANAG00000036126) #27	SPOP (ENSANAG00000025648) #28	NXPH3 (ENSANAG00000030977) #29
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Pan	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00940000161510	ENSGT00940000162032	ENSGT00940000156796	ENSGT00730000111282	ENSGT00940000159217	ENSGT00940000158370	ENSGT00390000014827.n	ENSGT00410000026943
Bonobo	MODERN SPECIES	8	MYCBPAP (ENSPPAG00000020130) #8	RSAD1 (ENSPPAG00000038908) #9	CHAD (ENSPPAG00000042480) #10	ACSF2 (ENSPPAG00000041679)	LRRC59 (ENSPPAG00000038146) #11	EME1 (ENSPPAG00000043143) #12	MRPL27 (ENSPPAG00000037578) #13	XYLT2 (ENSPPAG00000040742) #14	TMEM92 (ENSPPAG00000030755) #15	COL1A1 (ENSPPAG00000001294) #16	SGCA (ENSPPAG00000043792) #17	PPP1R9B (ENSPPAG00000034102) #18	SAMD14 (ENSPPAG00000029871) #19	PDK2 (ENSPPAG00000027588) #20	ITGA3 (ENSPPAG00000033847) #21	DLX3 (ENSPPAG00000003644) #22	DLX4 (ENSPPAG00000041902) #23	TAC4 (ENSPPAG00000028441) #24	KAT7 (ENSPPAG00000041097) #25	FAM117A (ENSPPAG00000032931) #26	SLC35B1 (ENSPPAG00000037729) #27	SPOP (ENSPPAG00000025621) #28	ENSPPAG00000031130 #29	ALOX15B (ENSPPAG00000040178)	ALOX12B (ENSPPAG00000013603)	ALOXE3 (ENSPPAG00000031012)	ENSPPAG00000033618	PER1 (ENSPPAG00000040729)	VAMP2 (ENSPPAG00000022280)	TMEM107 (ENSPPAG00000042069)	ENSPPAG00000007117
Chimpanzee	MODERN SPECIES	8	RSAD1 (ENSPTRG00000009401) #9	CHAD (ENSPTRG00000009400) #10	ACSF2 (ENSPTRG00000009399)	LRRC59 (ENSPTRG00000009398) #11	EME1 (ENSPTRG00000009397) #12	MRPL27 (ENSPTRG00000009396) #13	XYLT2 (ENSPTRG00000009395) #14	TMEM92 (ENSPTRG00000042996) #15	COL1A1 (ENSPTRG00000009393) #16	H1-9 (ENSPTRG00000046816)	SGCA (ENSPTRG00000009391) #17	PPP1R9B (ENSPTRG00000043428) #18	SAMD14 (ENSPTRG00000009389) #19	PDK2 (ENSPTRG00000009388) #20	ITGA3 (ENSPTRG00000009387) #21	DLX3 (ENSPTRG00000009386) #22	DLX4 (ENSPTRG00000009385) #23	TAC4 (ENSPTRG00000009384) #24	KAT7 (ENSPTRG00000009383) #25	FAM117A (ENSPTRG00000009382) #26	SLC35B1 (ENSPTRG00000009381) #27	SPOP (ENSPTRG00000009380) #28	ENSPTRG00000050792 #29	ALOX15B (ENSPTRG00000008721)	ALOX12B (ENSPTRG00000008723)	ALOXE3 (ENSPTRG00000008724)	HES7 (ENSPTRG00000008725)	PER1 (ENSPTRG00000008726)	VAMP2 (ENSPTRG00000008727)	TMEM107 (ENSPTRG00000008728)	ENSPTRG00000047944
Human	MODERN SPECIES	8	MYCBPAP (ENSG00000136449) #8	RSAD1 (ENSG00000136444) #9	CHAD (ENSG00000136457) #10	ACSF2 (ENSG00000167107)	LRRC59 (ENSG00000108829) #11	EME1 (ENSG00000154920) #12	MRPL27 (ENSG00000108826) #13	XYLT2 (ENSG00000015532) #14	TMEM92 (ENSG00000167105) #15	COL1A1 (ENSG00000108821) #16	SGCA (ENSG00000108823) #17	PPP1R9B (ENSG00000108819) #18	SAMD14 (ENSG00000167100) #19	PDK2 (ENSG00000005882) #20	ITGA3 (ENSG00000005884) #21	DLX3 (ENSG00000064195) #22	DLX4 (ENSG00000108813) #23	TAC4 (ENSG00000176358) #24	KAT7 (ENSG00000136504) #25	FAM117A (ENSG00000121104) #26	SLC35B1 (ENSG00000121073) #27	SPOP (ENSG00000121067) #28	NXPH3 (ENSG00000182575) #29	NGFR (ENSG00000064300) #30	PHB1 (ENSG00000167085) #31	ZNF652 (ENSG00000198740) #32	PHOSPHO1 (ENSG00000173868) #33	ABI3 (ENSG00000108798) #34	GNGT2 (ENSG00000167083) #35	B4GALNT2 (ENSG00000167080) #36	IGF2BP1 (ENSG00000159217)
Gorilla	MODERN SPECIES	18	CHAD (ENSGGOG00000006518) #10	LRRC59 (ENSGGOG00000006310) #11	EME1 (ENSGGOG00000011302) #12	MRPL27 (ENSGGOG00000011954) #13	XYLT2 (ENSGGOG00000011942) #14	TMEM92 (ENSGGOG00000025886) #15	ENSGGOG00000041481	ENSGGOG00000039430	COL1A1 (ENSGGOG00000013208) #16	SGCA (ENSGGOG00000013199) #17	ENSGGOG00000013204	PPP1R9B (ENSGGOG00000042350) #18	SAMD14 (ENSGGOG00000015586) #19	PDK2 (ENSGGOG00000015583) #20	ITGA3 (ENSGGOG00000013558) #21	DLX3 (ENSGGOG00000014997) #22	DLX4 (ENSGGOG00000014992) #23	ENSGGOG00000042625	TAC4 (ENSGGOG00000007479) #24	KAT7 (ENSGGOG00000007469) #25	FAM117A (ENSGGOG00000004783) #26	SLC35B1 (ENSGGOG00000004776) #27	ENSGGOG00000009295 #28	ENSGGOG00000036288 #29	NGFR (ENSGGOG00000008434) #30	ENSGGOG00000037188	PHB (ENSGGOG00000028002) #31	ZNF652 (ENSGGOG00000010288) #32	PHOSPHO1 (ENSGGOG00000001957) #33	ABI3 (ENSGGOG00000001954) #34	ENSGGOG00000001953 #35
Orangutan	MODERN SPECIES	8	EPN3 (ENSPPYG00000008279) #7	MYCBPAP (ENSPPYG00000008280) #8	RSAD1 (ENSPPYG00000008281) #9	ACSF2 (ENSPPYG00000008282)	CHAD (ENSPPYG00000008283) #10	ENSPPYG00000034021 #11	EME1 (ENSPPYG00000008285) #12	XYLT2 (ENSPPYG00000008287) #14	TMEM92 (ENSPPYG00000008938) #15	COL1A1 (ENSPPYG00000008937) #16	SGCA (ENSPPYG00000008935) #17	PPP1R9B (ENSPPYG00000008934) #18	SAMD14 (ENSPPYG00000008933) #19	PDK2 (ENSPPYG00000008932) #20	ITGA3 (ENSPPYG00000008931) #21	DLX3 (ENSPPYG00000008930) #22	DLX4 (ENSPPYG00000008929) #23	TAC4 (ENSPPYG00000008926) #24	KAT7 (ENSPPYG00000008925) #25	ENSPPYG00000008924 #26	SPOP (ENSPPYG00000008923) #28	ENSPPYG00000034149 #29	NGFR (ENSPPYG00000008921) #30	ENSPPYG00000008920 #31	ZNF652 (ENSPPYG00000008919) #32	PHOSPHO1 (ENSPPYG00000008917) #33	ABI3 (ENSPPYG00000008916) #34	ENSPPYG00000008915 #35	B4GALNT2 (ENSPPYG00000008914) #36	IGF2BP1 (ENSPPYG00000008913)	GIP (ENSPPYG00000008912)
Gibbon	MODERN SPECIES	105															ENSNLEG00000030078	DLX3 (ENSNLEG00000003294) #22	ENSNLEG00000003291 #23	ENSNLEG00000003272 #24	KAT7 (ENSNLEG00000003201) #25	FAM117A (ENSNLEG00000003198) #26	SLC35B1 (ENSNLEG00000003163) #27	SPOP (ENSNLEG00000003088) #28	ENSNLEG00000003086 #29	ENSNLEG00000003078 #30	ENSNLEG00000031597	PHB1 (ENSNLEG00000002978) #31	ZNF652 (ENSNLEG00000027071) #32	ENSNLEG00000018816 #33	ABI3 (ENSNLEG00000002938) #34	ENSNLEG00000002931 #35	B4GALNT2 (ENSNLEG00000002844) #36
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000006238.n	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Black snub-nosed monkey	MODERN SPECIES	1661	RSAD1 (ENSRBIG00000044435) #9	ACSF2 (ENSRBIG00000039108)	CHAD (ENSRBIG00000044280) #10	LRRC59 (ENSRBIG00000033634) #11	EME1 (ENSRBIG00000033427) #12	MRPL27 (ENSRBIG00000033398) #13	XYLT2 (ENSRBIG00000044739) #14	TMEM92 (ENSRBIG00000032676) #15	COL1A1 (ENSRBIG00000039556) #16	SGCA (ENSRBIG00000024658) #17	ENSRBIG00000035550	PPP1R9B (ENSRBIG00000000643) #18	SAMD14 (ENSRBIG00000040751) #19	PDK2 (ENSRBIG00000029967) #20	ITGA3 (ENSRBIG00000031472) #21	DLX3 (ENSRBIG00000037611) #22	DLX4 (ENSRBIG00000042692) #23	ENSRBIG00000013434	ENSRBIG00000040783	ENSRBIG00000005357	KAT7 (ENSRBIG00000031559) #25	ENSRBIG00000011981	FAM117A (ENSRBIG00000031638) #26	SLC35B1 (ENSRBIG00000034096) #27	SPOP (ENSRBIG00000035729) #28	NXPH3 (ENSRBIG00000043134) #29	NGFR (ENSRBIG00000044844) #30	ENSRBIG00000044848 #31	ZNF652 (ENSRBIG00000044859) #32	PHOSPHO1 (ENSRBIG00000041603) #33	ABI3 (ENSRBIG00000020770) #34
Golden snub-nosed monkey	MODERN SPECIES	2563	RSAD1 (ENSRROG00000028670) #9	CHAD (ENSRROG00000038428) #10	ACSF2 (ENSRROG00000037852)	LRRC59 (ENSRROG00000031009) #11	EME1 (ENSRROG00000045622) #12	MRPL27 (ENSRROG00000030847) #13	XYLT2 (ENSRROG00000045441) #14	TMEM92 (ENSRROG00000039943) #15	COL1A1 (ENSRROG00000044544) #16	ENSRROG00000032771	SGCA (ENSRROG00000037245) #17	ENSRROG00000043195 #18	SAMD14 (ENSRROG00000042278) #19	PDK2 (ENSRROG00000036455) #20	ITGA3 (ENSRROG00000044196) #21	DLX3 (ENSRROG00000010213) #22	DLX4 (ENSRROG00000041446) #23
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Vervet Monkey	MODERN SPECIES	7	MYCBPAP (ENSCSAG00000005444) #8	RSAD1 (ENSCSAG00000005429) #9	ACSF2 (ENSCSAG00000005420)	CHAD (ENSCSAG00000005414) #10	LRRC59 (ENSCSAG00000005412) #11	EME1 (ENSCSAG00000005404) #12	MRPL27 (ENSCSAG00000005396) #13	XYLT2 (ENSCSAG00000005387) #14	TMEM92 (ENSCSAG00000005357) #15	COL1A1 (ENSCSAG00000005310) #16	SGCA (ENSCSAG00000005231) #17	PPP1R9B (ENSCSAG00000005228) #18	SAMD14 (ENSCSAG00000005224) #19	PDK2 (ENSCSAG00000005211) #20	ITGA3 (ENSCSAG00000005208) #21	DLX3 (ENSCSAG00000005198) #22	DLX4 (ENSCSAG00000005195) #23	TAC4 (ENSCSAG00000005188) #24	KAT7 (ENSCSAG00000005187) #25	TMC8 (ENSCSAG00000005185)	TMC6 (ENSCSAG00000005174)	TNRC6C (ENSCSAG00000005167)	SEPTIN9 (ENSCSAG00000005146)	SEC14L1 (ENSCSAG00000005133)	ENSCSAG00000000541	MGAT5B (ENSCSAG00000005125)	MFSD11 (ENSCSAG00000005118)	SRSF2 (ENSCSAG00000005108)	METTL23 (ENSCSAG00000005104)	JMJD6 (ENSCSAG00000005101)	MXRA7 (ENSCSAG00000005097)
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00390000002732.n.t	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.o #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Crab-eating macaque	MODERN SPECIES	7	MYCBPAP (ENSMFAG00000045294) #8	ENSMFAG00000024046	RSAD1 (ENSMFAG00000035805) #9	ACSF2 (ENSMFAG00000042230)	CHAD (ENSMFAG00000031869) #10	EME1 (ENSMFAG00000040987) #12	ENSMFAG00000031691 #13	XYLT2 (ENSMFAG00000043415) #14	TMEM92 (ENSMFAG00000040318) #15	COL1A1 (ENSMFAG00000033990) #16	SGCA (ENSMFAG00000029765) #17	PPP1R9B (ENSMFAG00000041494) #18	SAMD14 (ENSMFAG00000045601) #19	PDK2 (ENSMFAG00000042437) #20	ITGA3 (ENSMFAG00000043382) #21	DLX3 (ENSMFAG00000032276) #22	DLX4 (ENSMFAG00000013144) #23	ENSMFAG00000044227	ENSMFAG00000049058	ENSMFAG00000051274	KAT7 (ENSMFAG00000036338) #25	ENSMFAG00000061536	FAM117A (ENSMFAG00000039391) #26	SLC35B1 (ENSMFAG00000025107) #27	SPOP (ENSMFAG00000000752) #28	NXPH3 (ENSMFAG00000041457) #29	NGFR (ENSMFAG00000044019) #30	ENSMFAG00000051302	PHB1 (ENSMFAG00000042554) #31	ZNF652 (ENSMFAG00000039085) #32	PHOSPHO1 (ENSMFAG00000041672) #33
Rhesus	MODERN SPECIES	7	MYCBPAP (ENSMMUG00000017242) #8	RSAD1 (ENSMMUG00000017240) #9	ACSF2 (ENSMMUG00000017236)	CHAD (ENSMMUG00000053287) #10	LRRC59 (ENSMMUG00000017234) #11	EME1 (ENSMMUG00000017233) #12	ENSMMUG00000017231 #13	TMEM92 (ENSMMUG00000056787) #15	COL1A1 (ENSMMUG00000001467) #16	ENSMMUG00000051568	SGCA (ENSMMUG00000001466) #17	PPP1R9B (ENSMMUG00000020061) #18	SAMD14 (ENSMMUG00000014687) #19	PDK2 (ENSMMUG00000014685) #20	ITGA3 (ENSMMUG00000000153) #21	DLX3 (ENSMMUG00000000157) #22	DLX4 (ENSMMUG00000017658) #23	ENSMMUG00000049512	ENSMMUG00000050934	KAT7 (ENSMMUG00000047550) #25	SLC35B1 (ENSMMUG00000008870) #26	SPOP (ENSMMUG00000018752) #28	NXPH3 (ENSMMUG00000003383) #29	ENSMMUG00000064469	NGFR (ENSMMUG00000014603) #30	ENSMMUG00000065166	PHB1 (ENSMMUG00000000156) #31	ZNF652 (ENSMMUG00000003453) #32	PHOSPHO1 (ENSMMUG00000002436) #33	ABI3 (ENSMMUG00000002437) #34	B4GALNT2 (ENSMMUG00000015845) #36
Pig-tailed macaque	MODERN SPECIES	494	RSAD1 (ENSMNEG00000031537) #9	CHAD (ENSMNEG00000042174) #10	ACSF2 (ENSMNEG00000042990)	LRRC59 (ENSMNEG00000024016) #11	EME1 (ENSMNEG00000036149) #12	MRPL27 (ENSMNEG00000020495) #13	XYLT2 (ENSMNEG00000038586) #14	TMEM92 (ENSMNEG00000041470) #15	COL1A1 (ENSMNEG00000038612) #16	ENSMNEG00000024961	SGCA (ENSMNEG00000040835) #17	PPP1R9B (ENSMNEG00000033285) #18	SAMD14 (ENSMNEG00000043590) #19	PDK2 (ENSMNEG00000042768) #20	ITGA3 (ENSMNEG00000029777) #21	DLX3 (ENSMNEG00000031310) #22	DLX4 (ENSMNEG00000035926) #23	ENSMNEG00000029555	KAT7 (ENSMNEG00000044419) #25	ENSMNEG00000044360 #26	SLC35B1 (ENSMNEG00000042757) #27	SPOP (ENSMNEG00000044368) #28	NXPH3 (ENSMNEG00000038163) #29	NGFR (ENSMNEG00000043507) #30	ENSMNEG00000026686	ENSMNEG00000030128 #31	ZNF652 (ENSMNEG00000037260) #32	PHOSPHO1 (ENSMNEG00000028521) #33	ABI3 (ENSMNEG00000036355) #34	GNGT2 (ENSMNEG00000029921) #35	B4GALNT2 (ENSMNEG00000044329) #36
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Olive baboon	MODERN SPECIES	8	ENSPANG00000050914	RSAD1 (ENSPANG00000022474) #9	ACSF2 (ENSPANG00000022496)	CHAD (ENSPANG00000048455) #10	LRRC59 (ENSPANG00000022494) #11	EME1 (ENSPANG00000022493) #12	MRPL27 (ENSPANG00000022492) #13	XYLT2 (ENSPANG00000022500) #14	ENSPANG00000037162	COL1A1 (ENSPANG00000022601) #16	SGCA (ENSPANG00000022636) #17	PPP1R9B (ENSPANG00000049495) #18	SAMD14 (ENSPANG00000022624) #19	PDK2 (ENSPANG00000022651) #20	ENSPANG00000046741 #21	DLX3 (ENSPANG00000041730) #22	DLX4 (ENSPANG00000022817) #23	KAT7 (ENSPANG00000022824) #25	ENSPANG00000022823 #26	SLC35B1 (ENSPANG00000022822) #27	SPOP (ENSPANG00000022821) #28	NXPH3 (ENSPANG00000022820) #29	NGFR (ENSPANG00000022819) #30	PHB1 (ENSPANG00000022828) #31	ZNF652 (ENSPANG00000022829) #32	PHOSPHO1 (ENSPANG00000018531) #33	ABI3 (ENSPANG00000042285) #34	GNGT2 (ENSPANG00000022835) #35	B4GALNT2 (ENSPANG00000022834) #36	ENSPANG00000038197	ENSPANG00000049141
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Drill	MODERN SPECIES	1297	ENSMLEG00000031115	RSAD1 (ENSMLEG00000037409) #9	ACSF2 (ENSMLEG00000001658)	CHAD (ENSMLEG00000034621) #10	LRRC59 (ENSMLEG00000041723) #11	EME1 (ENSMLEG00000010071) #12	MRPL27 (ENSMLEG00000038438) #13	XYLT2 (ENSMLEG00000034405) #14	TMEM92 (ENSMLEG00000005643) #15	COL1A1 (ENSMLEG00000034469) #16	SGCA (ENSMLEG00000028724) #17	ENSMLEG00000039748 #18	SAMD14 (ENSMLEG00000042974) #19	PDK2 (ENSMLEG00000041794) #20	ITGA3 (ENSMLEG00000030402) #21	DLX3 (ENSMLEG00000026314) #22	DLX4 (ENSMLEG00000029820) #23	ENSMLEG00000037371	ENSMLEG00000031342	KAT7 (ENSMLEG00000043692) #25	ENSMLEG00000001352 #26	SLC35B1 (ENSMLEG00000028555) #27	SPOP (ENSMLEG00000043280) #28	NXPH3 (ENSMLEG00000043510) #29	NGFR (ENSMLEG00000009406) #30	ENSMLEG00000043194 ##31	ZNF652 (ENSMLEG00000034995) #32	PHOSPHO1 (ENSMLEG00000039410) #33	ABI3 (ENSMLEG00000030652) #34	GNGT2 (ENSMLEG00000036852) #35	B4GALNT2 (ENSMLEG00000020666) #36
Sooty mangabey	MODERN SPECIES	564	RSAD1 (ENSCATG00000042705) #9	ACSF2 (ENSCATG00000035014)	CHAD (ENSCATG00000038156) #10	LRRC59 (ENSCATG00000015912) #11	EME1 (ENSCATG00000000384) #12	MRPL27 (ENSCATG00000028901) #13	XYLT2 (ENSCATG00000038951) #14	TMEM92 (ENSCATG00000044818) #15	COL1A1 (ENSCATG00000026514) #16	SGCA (ENSCATG00000004963) #17	ENSCATG00000044884	PPP1R9B (ENSCATG00000037746) #18	SAMD14 (ENSCATG00000031573) #19	PDK2 (ENSCATG00000032247) #20	ITGA3 (ENSCATG00000022073) #21	DLX3 (ENSCATG00000044310) #22	DLX4 (ENSCATG00000036886) #23	ENSCATG00000000745	ENSCATG00000035460	KAT7 (ENSCATG00000030056) #25	ENSCATG00000042140 #26	SLC35B1 (ENSCATG00000036462) #27	SPOP (ENSCATG00000028294) #28	NXPH3 (ENSCATG00000030177) #29	NGFR (ENSCATG00000030822) #30	ENSCATG00000044390 #31	ZNF652 (ENSCATG00000039244) #32	PHOSPHO1 (ENSCATG00000040780) #33	ABI3 (ENSCATG00000044608) #34	GNGT2 (ENSCATG00000040371) #35	B4GALNT2 (ENSCATG00000041984) #36
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.k #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Mouse lemur	MODERN SPECIES	7	RSAD1 (ENSMICG00000033136) #9	ACSF2 (ENSMICG00000009718)	CHAD (ENSMICG00000027984) #10	LRRC59 (ENSMICG00000030215) #11	EME1 (ENSMICG00000009705) #12	MRPL27 (ENSMICG00000009698) #13	XYLT2 (ENSMICG00000009687) #14	TMEM92 (ENSMICG00000007273) #15	COL1A1 (ENSMICG00000007252) #16	SGCA (ENSMICG00000007247) #17	ENSMICG00000038279	PPP1R9B (ENSMICG00000027692) #18	SAMD14 (ENSMICG00000007228) #19	PDK2 (ENSMICG00000007219) #20	ITGA3 (ENSMICG00000007204) #21	DLX3 (ENSMICG00000037127) #22	DLX4 (ENSMICG00000031694) #23	TAC4 (ENSMICG00000016489) #24	KAT7 (ENSMICG00000016478) #25	FAM117A (ENSMICG00000031031) #26	SLC35B1 (ENSMICG00000016462) #27	SPOP (ENSMICG00000006987) #28	NXPH3 (ENSMICG00000006985) #29	NGFR (ENSMICG00000037395) #30	ENSMICG00000043778 #31	ZNF652 (ENSMICG00000006959) #32	PHOSPHO1 (ENSMICG00000032861) #33	ABI3 (ENSMICG00000008618) #34	GNGT2 (ENSMICG00000045728) #35	B4GALNT2 (ENSMICG00000008596) #36	ENSMICG00000037104
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660.k #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Greater bamboo lemur	MODERN SPECIES	1079				LRRC59 (ENSPSMG00000023941) #11	EME1 (ENSPSMG00000023952) #12	ENSPSMG00000023960 #13	XYLT2 (ENSPSMG00000023995) #14	TMEM92 (ENSPSMG00000024016) #15	COL1A1 (ENSPSMG00000024033) #16	SGCA (ENSPSMG00000024047) #17	ENSPSMG00000024052	PPP1R9B (ENSPSMG00000024059) #18	SAMD14 (ENSPSMG00000024063) #19	PDK2 (ENSPSMG00000024072) #20	ITGA3 (ENSPSMG00000024125) #21	DLX3 (ENSPSMG00000024150) #22	DLX4 (ENSPSMG00000024154) #23	TAC4 (ENSPSMG00000024159) #24	KAT7 (ENSPSMG00000024267) #25	FAM117A (ENSPSMG00000024310) #26	SLC35B1 (ENSPSMG00000024325) #27	SPOP (ENSPSMG00000024349) #28	NXPH3 (ENSPSMG00000024356) #29	NGFR (ENSPSMG00000024367) #30	PHB1 (ENSPSMG00000024377) #31	ZNF652 (ENSPSMG00000024391) #32	PHOSPHO1 (ENSPSMG00000024394) #33	ABI3 (ENSPSMG00000024397) #34	GNGT2 (ENSPSMG00000024402) #35	B4GALNT2 (ENSPSMG00000024407) #36
Coquerels sifaka	MODERN SPECIES	120	MYCBPAP (ENSPCOG00000028417) #8	RSAD1 (ENSPCOG00000019679) #9	CHAD (ENSPCOG00000023064) #10	ACSF2 (ENSPCOG00000021413)	LRRC59 (ENSPCOG00000019835) #11	EME1 (ENSPCOG00000021528) #12	MRPL27 (ENSPCOG00000014496) #13	XYLT2 (ENSPCOG00000022051) #14	TMEM92 (ENSPCOG00000016701) #15	COL1A1 (ENSPCOG00000022260) #16	SGCA (ENSPCOG00000018516) #17	PPP1R9B (ENSPCOG00000022313) #18	SAMD14 (ENSPCOG00000022625) #19	PDK2 (ENSPCOG00000024290) #20	ITGA3 (ENSPCOG00000024145) #21	DLX3 (ENSPCOG00000027168) #22	DLX4 (ENSPCOG00000027773) #23	TAC4 (ENSPCOG00000003764) #24	KAT7 (ENSPCOG00000022157) #25	FAM117A (ENSPCOG00000024870) #26	SLC35B1 (ENSPCOG00000022007) #27	SPOP (ENSPCOG00000015101) #28	NXPH3 (ENSPCOG00000013916) #29	NGFR (ENSPCOG00000018887) #30	ENSPCOG00000004228 #31	ZNF652 (ENSPCOG00000026434) #32	PHOSPHO1 (ENSPCOG00000025336) #33	ABI3 (ENSPCOG00000022568) #34	GNGT2 (ENSPCOG00000012867) #35	B4GALNT2 (ENSPCOG00000013984) #36	ENSPCOG00000018672
Bushbaby	MODERN SPECIES	133	RSAD1 (ENSOGAG00000005398) #9	CHAD (ENSOGAG00000029025) #10	ACSF2 (ENSOGAG00000005393)	LRRC59 (ENSOGAG00000000949) #11	ENSOGAG00000005389 #12	ENSOGAG00000005385 #13	XYLT2 (ENSOGAG00000034388) #14	TMEM92 (ENSOGAG00000031374) #15	COL1A1 (ENSOGAG00000024598) #16	ENSOGAG00000027712	SGCA (ENSOGAG00000033076) #17	PPP1R9B (ENSOGAG00000007812) #18	SAMD14 (ENSOGAG00000025589) #19	PDK2 (ENSOGAG00000005143) #20	ITGA3 (ENSOGAG00000005138) #21	DLX3 (ENSOGAG00000005136) #22	DLX4 (ENSOGAG00000005134) #23	TAC4 (ENSOGAG00000001052) #24	KAT7 (ENSOGAG00000001049) #25	FAM117A (ENSOGAG00000001048) #26	SLC35B1 (ENSOGAG00000001047) #27	SPOP (ENSOGAG00000012793) #28	NXPH3 (ENSOGAG00000012792) #29	NGFR (ENSOGAG00000015270) #30	ENSOGAG00000027015 #31	ZNF652 (ENSOGAG00000003574) #32	PHOSPHO1 (ENSOGAG00000034530) #33	ABI3 (ENSOGAG00000029723) #34	B4GALNT2 (ENSOGAG00000003570) #36	IGF2BP1 (ENSOGAG00000001270)	GIP (ENSOGAG00000010130)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Tree shrew	MODERN SPECIES	269																DLX3 (ENSTBEG00000015892) #22	ENSTBEG00000015465 #23
Glires	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000158217 #7	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Rabbit	MODERN SPECIES	10	MYCBPAP (ENSOCUG00000002706) #8	ENSOCUG00000036140	RSAD1 (ENSOCUG00000002702) #9	ACSF2 (ENSOCUG00000002690)	LRRC59 (ENSOCUG00000004613) #11	EME1 (ENSOCUG00000004604) #12	MRPL27 (ENSOCUG00000004601) #13	XYLT2 (ENSOCUG00000004592) #14	TMEM92 (ENSOCUG00000021058) #15	COL1A1 (ENSOCUG00000012881) #16	SGCA (ENSOCUG00000026736) #17	ENSOCUG00000012304	ENSOCUG00000022357 #20	SAMD14 (ENSOCUG00000022140) #19	ITGA3 (ENSOCUG00000009990) #21	DLX3 (ENSOCUG00000007833) #22	DLX4 (ENSOCUG00000022067) #23	TAC4 (ENSOCUG00000023306) #24	KAT7 (ENSOCUG00000000668) #25	FAM117A (ENSOCUG00000016733) #26	SLC35B1 (ENSOCUG00000023120) #27	SPOP (ENSOCUG00000016723) #28	ENSOCUG00000034391	NXPH3 (ENSOCUG00000013921) #29	NGFR (ENSOCUG00000007635) #30	ENSOCUG00000007209 #31	ZNF652 (ENSOCUG00000002965) #32	PHOSPHO1 (ENSOCUG00000016347) #33	ABI3 (ENSOCUG00000016339) #34	GNGT2 (ENSOCUG00000016331) #35	B4GALNT2 (ENSOCUG00000003531) #36
Pika	MODERN SPECIES	143	EPN3 (ENSOPRG00000013374) #7	MYCBPAP (ENSOPRG00000013326) #8	RSAD1 (ENSOPRG00000013309) #9	CHAD (ENSOPRG00000013295) #10	ACSF2 (ENSOPRG00000013276)	LRRC59 (ENSOPRG00000013264) #11	EME1 (ENSOPRG00000013249) #12	MRPL27 (ENSOPRG00000013236) #13	XYLT2 (ENSOPRG00000013224) #14	ENSOPRG00000013172	ENSOPRG00000013165	SGCA (ENSOPRG00000013155) #17	PPP1R9B (ENSOPRG00000013133) #18	SAMD14 (ENSOPRG00000013126) #19	ITGA3 (ENSOPRG00000013097) #21	DLX3 (ENSOPRG00000013091) #22	DLX4 (ENSOPRG00000013058) #23
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Muroidea	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Prairie vole	MODERN SPECIES	15	Chad (ENSMOCG00000003529) #10	ENSMOCG00000019773	ENSMOCG00000018915	Lrrc59 (ENSMOCG00000014423) #11	Eme1 (ENSMOCG00000005748) #12	ENSMOCG00000013199 #13	Xylt2 (ENSMOCG00000009787) #14	ENSMOCG00000017038	Tmem92 (ENSMOCG00000013915) #15	Col1a1 (ENSMOCG00000022060) #16	Sgca (ENSMOCG00000019942) #17	Ppp1r9b (ENSMOCG00000004637) #18	Samd14 (ENSMOCG00000012339) #19	Pdk2 (ENSMOCG00000019896) #20	Itga3 (ENSMOCG00000007772) #21	Dlx3 (ENSMOCG00000019860) #22	Dlx4 (ENSMOCG00000013049) #23	Tac4 (ENSMOCG00000015203) #24	Kat7 (ENSMOCG00000012946) #25	Fam117a (ENSMOCG00000004559) #26	Slc35b1 (ENSMOCG00000006471) #27	Spop (ENSMOCG00000017955) #28	Nxph3 (ENSMOCG00000019725) #29	Ngfr (ENSMOCG00000011552) #30	ENSMOCG00000013553 #31	Zfp652 (ENSMOCG00000017054) #32	Phospho1 (ENSMOCG00000011323) #33	Abi3 (ENSMOCG00000006282) #34	Gngt2 (ENSMOCG00000009807) #35	B4galnt2 (ENSMOCG00000006515) #36	Igf2bp1 (ENSMOCG00000010232)
Northern American deer mouse	MODERN SPECIES	21	Rsad1 (ENSPEMG00000021383) #9	Acsf2 (ENSPEMG00000020965)	Chad (ENSPEMG00000025139) #10	Lrrc59 (ENSPEMG00000029228) #11	Eme1 (ENSPEMG00000006307) #12	Mrpl27 (ENSPEMG00000020655) #13	Xylt2 (ENSPEMG00000021056) #14	Tmem92 (ENSPEMG00000021048) #15	Col1a1 (ENSPEMG00000024212) #16	Sgca (ENSPEMG00000021738) #17	ENSPEMG00000024353	Ppp1r9b (ENSPEMG00000020691) #18	Samd14 (ENSPEMG00000020781) #19	Pdk2 (ENSPEMG00000020540) #20	Itga3 (ENSPEMG00000023588) #21	Dlx3 (ENSPEMG00000028715) #22	Dlx4 (ENSPEMG00000004265) #23	Tac4 (ENSPEMG00000014516) #24	Kat7 (ENSPEMG00000020984) #25	Fam117a (ENSPEMG00000020788) #26	ENSPEMG00000021039 #27	ENSPEMG00000026857	Spop (ENSPEMG00000012191) #28	Nxph3 (ENSPEMG00000027912) #29	Ngfr (ENSPEMG00000020336) #30	Phb (ENSPEMG00000021310) #31	Zfp652 (ENSPEMG00000020862) #32	Phospho1 (ENSPEMG00000026539) #33	Abi3 (ENSPEMG00000014242) #34	Gngt2 (ENSPEMG00000027491) #35	B4galnt2 (ENSPEMG00000020717) #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Golden Hamster	MODERN SPECIES	674	Epn3 (ENSMAUG00000009495) #7	Mycbpap (ENSMAUG00000016107) #8	Rsad1 (ENSMAUG00000008431) #9	Acsf2 (ENSMAUG00000020585)	Chad (ENSMAUG00000020237) #10	Lrrc59 (ENSMAUG00000020384) #11	Eme1 (ENSMAUG00000011175) #12	Mrpl27 (ENSMAUG00000015242) #13	Xylt2 (ENSMAUG00000020996) #14	Col1a1 (ENSMAUG00000019272) #16	Sgca (ENSMAUG00000009888) #17	Ppp1r9b (ENSMAUG00000013974) #18	Samd14 (ENSMAUG00000010153) #19	Pdk2 (ENSMAUG00000020321) #20	Itga3 (ENSMAUG00000013250) #21	Dlx3 (ENSMAUG00000011673) #22	Tac4 (ENSMAUG00000006918) #24	ENSMAUG00000018213	Fam117a (ENSMAUG00000018942) #26	Slc35b1 (ENSMAUG00000001422) #27	Spop (ENSMAUG00000001558) #28	ENSMAUG00000008827	Nxph3 (ENSMAUG00000016785) #29	Ngfr (ENSMAUG00000019765) #30	Phb (ENSMAUG00000013028) #31	Zfp652 (ENSMAUG00000009337) #32	Phospho1 (ENSMAUG00000012074) #33	Abi3 (ENSMAUG00000021085) #34	Gngt2 (ENSMAUG00000019144) #35	B4galnt2 (ENSMAUG00000007916) #36	Gip (ENSMAUG00000009238)
Chinese hamster chok1gshd	MODERN SPECIES	33	Acsf2 (ENSCGRG00001006504)	Chad (ENSCGRG00001017300) #10	Lrrc59 (ENSCGRG00001003469) #11	Eme1 (ENSCGRG00001012113) #12	Mrpl27 (ENSCGRG00001018944) #13	Xylt2 (ENSCGRG00001021636) #14	ENSCGRG00001017654	ENSCGRG00001022011	Col1a1 (ENSCGRG00001020668) #16	Sgca (ENSCGRG00001019141) #17	H1f9 (ENSCGRG00001005718)	Ppp1r9b (ENSCGRG00001012352) #18	Samd14 (ENSCGRG00001002338) #19	Pdk2 (ENSCGRG00001014853) #20	Itga3 (ENSCGRG00001021353) #21	Dlx3 (ENSCGRG00001022154) #22	Dlx4 (ENSCGRG00001019843) #23	Tac4 (ENSCGRG00001001077) #24	ENSCGRG00001005107	Fam117a (ENSCGRG00001009494) #26	Slc35b1 (ENSCGRG00001006734) #27	Spop (ENSCGRG00001024062) #28	Nxph3 (ENSCGRG00001014680) #29	Ngfr (ENSCGRG00001022139) #30	Phb (ENSCGRG00001008513) #31	Zfp652 (ENSCGRG00001018513) #32	Phospho1 (ENSCGRG00001009639) #33	Abi3 (ENSCGRG00001013274) #34	Gngt2 (ENSCGRG00001021265) #35	B4galnt2 (ENSCGRG00001014272) #36	ENSCGRG00001000282
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Mus	ANCESTRAL SPECIES	2	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT01090000261338	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
spretus	MODERN SPECIES	2	Acsf2 (MGP_SPRETEiJ_G0017831)	Chad (MGP_SPRETEiJ_G0017832) #10	Lrrc59 (MGP_SPRETEiJ_G0017833) #11	Eme1 (MGP_SPRETEiJ_G0017834) #12	Mrpl27 (MGP_SPRETEiJ_G0017835) #13	Xylt2 (MGP_SPRETEiJ_G0017836) #14	MGP_SPRETEiJ_G0017837	Cdc34b (MGP_SPRETEiJ_G0017838)	Col1a1 (MGP_SPRETEiJ_G0017839) #16	Sgca (MGP_SPRETEiJ_G0017840) #17	H1f9 (MGP_SPRETEiJ_G0017841)	Ppp1r9b (MGP_SPRETEiJ_G0017842) #18	Samd14 (MGP_SPRETEiJ_G0017843) #19	Pdk2 (MGP_SPRETEiJ_G0017844) #20	Itga3 (MGP_SPRETEiJ_G0017845) #21	Dlx3 (MGP_SPRETEiJ_G0017846) #22	Dlx4 (MGP_SPRETEiJ_G0017847) #23	Tac4 (MGP_SPRETEiJ_G0017848) #24	Kat7 (MGP_SPRETEiJ_G0017849) #25	Fam117a (MGP_SPRETEiJ_G0017850) #26	Slc35b1 (MGP_SPRETEiJ_G0017851) #27	MGP_SPRETEiJ_G0017852 #28	Nxph3 (MGP_SPRETEiJ_G0017853) #29	Ngfr (MGP_SPRETEiJ_G0017854) #30	Phb (MGP_SPRETEiJ_G0017855) #31	Zfp652 (MGP_SPRETEiJ_G0017856) #32	MGP_SPRETEiJ_G0017857	Phospho1 (MGP_SPRETEiJ_G0017858) #33	MGP_SPRETEiJ_G0017859 #34	Gngt2 (MGP_SPRETEiJ_G0017860) #35	B4galnt2 (MGP_SPRETEiJ_G0017861) #36
Steppe mouse	MODERN SPECIES	3291							ENSMSIG00000020048 #15	ENSMSIG00000020040 #15	Col1a1 (ENSMSIG00000019958) #16	H1f9 (ENSMSIG00000019945)	Sgca (ENSMSIG00000019913) #17	Ppp1r9b (ENSMSIG00000019879) #18	Samd14 (ENSMSIG00000019863) #19	Pdk2 (ENSMSIG00000019841) #20	Itga3 (ENSMSIG00000019761) #21	Dlx3 (ENSMSIG00000019752) #22	Dlx4 (ENSMSIG00000019740) #23	Tac4 (ENSMSIG00000019727) #24	Kat7 (ENSMSIG00000019556) #25	Fam117a (ENSMSIG00000019538) #26	Slc35b1 (ENSMSIG00000019515) #27	Spop (ENSMSIG00000019434) #28	Nxph3 (ENSMSIG00000019422) #29	Ngfr (ENSMSIG00000019412) #30	ENSMSIG00000019393 #31	ENSMSIG00000019388	ENSMSIG00000019385	Zfp652 (ENSMSIG00000019372) #32	Phospho1 (ENSMSIG00000019336) #33	Abi3 (ENSMSIG00000019324) #34	Gngt2 (ENSMSIG00000019268) #35
Mouse	MODERN SPECIES	2	Acsf2 (ENSMUSG00000076435)	Chad (ENSMUSG00000039084) #10	Lrrc59 (ENSMUSG00000020869) #11	Eme1 (ENSMUSG00000039055) #12	Mrpl27 (ENSMUSG00000024414) #13	Xylt2 (ENSMUSG00000020868) #14	Cdc34b (ENSMUSG00000020870)	Tmem92 (ENSMUSG00000075610) #15	Col1a1 (ENSMUSG00000001506) #16	Sgca (ENSMUSG00000001508) #17	H1f9 (ENSMUSG00000038994)	Ppp1r9b (ENSMUSG00000038976) #18	Samd14 (ENSMUSG00000047181) #19	Pdk2 (ENSMUSG00000038967) #20	Itga3 (ENSMUSG00000001507) #21	Dlx3 (ENSMUSG00000001510) #22	Dlx4 (ENSMUSG00000020871) #23	Tac4 (ENSMUSG00000020872) #24	Kat7 (ENSMUSG00000038909) #25	Fam117a (ENSMUSG00000038893) #26	Slc35b1 (ENSMUSG00000020873) #27	Spop (ENSMUSG00000057522) #28	Nxph3 (ENSMUSG00000046719) #29	Ngfr (ENSMUSG00000000120) #30	Phb (ENSMUSG00000038845) #31	Zfp652 (ENSMUSG00000075595) #32	Phospho1 (ENSMUSG00000050860) #33	Abi3 (ENSMUSG00000018381) #34	Gngt2 (ENSMUSG00000038811) #35	B4galnt2 (ENSMUSG00000013418) #36	Igf2bp1 (ENSMUSG00000013415)
Ryukyu mouse	MODERN SPECIES	2	Chad (MGP_CAROLIEiJ_G0016986) #10	Lrrc59 (MGP_CAROLIEiJ_G0016987) #11	Eme1 (MGP_CAROLIEiJ_G0016988) #12	Mrpl27 (MGP_CAROLIEiJ_G0016989) #13	Xylt2 (MGP_CAROLIEiJ_G0016990) #14	MGP_CAROLIEiJ_G0016991	Cdc34b (MGP_CAROLIEiJ_G0016992)	MGP_CAROLIEiJ_G0016993 #15	Col1a1 (MGP_CAROLIEiJ_G0016994) #16	Sgca (MGP_CAROLIEiJ_G0016995) #17	H1f9 (MGP_CAROLIEiJ_G0016996)	Ppp1r9b (MGP_CAROLIEiJ_G0016997) #18	Samd14 (MGP_CAROLIEiJ_G0016998) #19	Pdk2 (MGP_CAROLIEiJ_G0016999) #20	Itga3 (MGP_CAROLIEiJ_G0017000) #21	Dlx3 (MGP_CAROLIEiJ_G0017001) #22	MGP_CAROLIEiJ_G0017002 #23	Tac4 (MGP_CAROLIEiJ_G0017003) #24	Kat7 (MGP_CAROLIEiJ_G0017004) #25	Fam117a (MGP_CAROLIEiJ_G0017005) #26	Slc35b1 (MGP_CAROLIEiJ_G0017006) #27	MGP_CAROLIEiJ_G0017007 #28	Nxph3 (MGP_CAROLIEiJ_G0017008) #29	Ngfr (MGP_CAROLIEiJ_G0017009) #30	MGP_CAROLIEiJ_G0017010 #31	MGP_CAROLIEiJ_G0017011 #32	Phospho1 (MGP_CAROLIEiJ_G0017012) #33	Abi3 (MGP_CAROLIEiJ_G0017013) #34	Gngt2 (MGP_CAROLIEiJ_G0017014) #35	B4galnt2 (MGP_CAROLIEiJ_G0017015) #36	Igf2bp1 (MGP_CAROLIEiJ_G0017016)
Shrew mouse	MODERN SPECIES	5	Rsad1 (MGP_PahariEiJ_G0018115) #9	Acsf2 (MGP_PahariEiJ_G0018116)	Chad (MGP_PahariEiJ_G0018117) #10	Lrrc59 (MGP_PahariEiJ_G0018118) #11	Eme1 (MGP_PahariEiJ_G0018119) #12	Mrpl27 (MGP_PahariEiJ_G0018120) #13	Xylt2 (MGP_PahariEiJ_G0018121) #14	MGP_PahariEiJ_G0018122	Col1a1 (MGP_PahariEiJ_G0018123) #16	Sgca (MGP_PahariEiJ_G0018124) #17	MGP_PahariEiJ_G0018125	Ppp1r9b (MGP_PahariEiJ_G0018126) #18	Samd14 (MGP_PahariEiJ_G0018127) #19	Pdk2 (MGP_PahariEiJ_G0018128) #20	Itga3 (MGP_PahariEiJ_G0018129) #21	Dlx3 (MGP_PahariEiJ_G0018130) #22	Dlx4 (MGP_PahariEiJ_G0018131) #23	MGP_PahariEiJ_G0018132 #24	Kat7 (MGP_PahariEiJ_G0018133) #25	Fam117a (MGP_PahariEiJ_G0018134) #26	Slc35b1 (MGP_PahariEiJ_G0018135) #27	Spop (MGP_PahariEiJ_G0018136) #28	Nxph3 (MGP_PahariEiJ_G0018137) #29	Ngfr (MGP_PahariEiJ_G0018138) #30	MGP_PahariEiJ_G0018139 #31	Zfp652 (MGP_PahariEiJ_G0018140) #32	MGP_PahariEiJ_G0018141	Phospho1 (MGP_PahariEiJ_G0018142) #33	Abi3 (MGP_PahariEiJ_G0018143) #34	Gngt2 (MGP_PahariEiJ_G0018144) #35	B4galnt2 (MGP_PahariEiJ_G0018145) #36
Rat	MODERN SPECIES	1	Mrpl27 (ENSRNOG00000003724) #13	Xylt2 (ENSRNOG00000003728) #14	ENSRNOG00000062464 #15	ENSRNOG00000067153 #15	LOC103693451 (ENSRNOG00000070607) #15	ENSRNOG00000070925 #15	ENSRNOG00000068780 #15	ENSRNOG00000068575	Col1a1 (ENSRNOG00000003897) #16	Sgca (ENSRNOG00000003998) #17	Hils1 (ENSRNOG00000024041)	Ppp1r9b (ENSRNOG00000052113) #18	Samd14 (ENSRNOG00000004155) #19	Pdk2 (ENSRNOG00000004172) #20	Itga3 (ENSRNOG00000004276) #21	Dlx3 (ENSRNOG00000004278) #22	Dlx4 (ENSRNOG00000004399) #23	Tac4 (ENSRNOG00000004404) #24	Kat7 (ENSRNOG00000022664) #25	AABR07030375.1 (ENSRNOG00000022375)	Fam117a (ENSRNOG00000004417) #26	Slc35b1 (ENSRNOG00000004510) #27	Spop (ENSRNOG00000004686) #28	Nxph3 (ENSRNOG00000005185) #29	Ngfr (ENSRNOG00000005392) #30	Phb1 (ENSRNOG00000046799) #31	Zfp652 (ENSRNOG00000017001) #32	ENSRNOG00000068958	Phospho1 (ENSRNOG00000005569) #33	Abi3 (ENSRNOG00000005575) #34	B4galnt2 (ENSRNOG00000067203) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Epn3 (ENSNGAG00000000845) #7	Mycbpap (ENSNGAG00000022343) #8	Rsad1 (ENSNGAG00000021237) #9	Chad (ENSNGAG00000020178) #10	Acsf2 (ENSNGAG00000017923)	Lrrc59 (ENSNGAG00000015675) #11	Eme1 (ENSNGAG00000014420) #12	Mrpl27 (ENSNGAG00000011345) #13	Xylt2 (ENSNGAG00000022851) #14	Col1a1 (ENSNGAG00000018018) #16	ENSNGAG00000014768 #17	Ppp1r9b (ENSNGAG00000006328) #18	Samd14 (ENSNGAG00000024291) #19	Pdk2 (ENSNGAG00000022231) #20	Itga3 (ENSNGAG00000001240) #21	Dlx3 (ENSNGAG00000022310) #22	Dlx4 (ENSNGAG00000017759) #23	Tac4 (ENSNGAG00000016792) #24	Kat7 (ENSNGAG00000021224) #25	Fam117a (ENSNGAG00000018414) #26	Slc35b1 (ENSNGAG00000017143) #27	ENSNGAG00000011377 #28	Nxph3 (ENSNGAG00000021464) #29	Ngfr (ENSNGAG00000016145) #30	Phb (ENSNGAG00000012333) #31	Zfp652 (ENSNGAG00000010366) #32	Phospho1 (ENSNGAG00000008704) #33	Abi3 (ENSNGAG00000003386) #34	Gngt2 (ENSNGAG00000001081) #35	B4galnt2 (ENSNGAG00000016426) #36	Igf2bp1 (ENSNGAG00000015679)
Lesser Egyptian jerboa	MODERN SPECIES	56	Epn3 (ENSJJAG00000010839) #7	Mycbpap (ENSJJAG00000010056) #8	Rsad1 (ENSJJAG00000010782) #9	Chad (ENSJJAG00000004104) #10	Acsf2 (ENSJJAG00000010167)	Lrrc59 (ENSJJAG00000009353) #11	Eme1 (ENSJJAG00000010730) #12	Mrpl27 (ENSJJAG00000006271) #13	Xylt2 (ENSJJAG00000010800) #14	Col1a1 (ENSJJAG00000011070) #16	Sgca (ENSJJAG00000006156) #17	Ppp1r9b (ENSJJAG00000008310) #18	Samd14 (ENSJJAG00000004713) #19	Pdk2 (ENSJJAG00000009652) #20	Itga3 (ENSJJAG00000010876) #21	Dlx3 (ENSJJAG00000002767) #22	Dlx4 (ENSJJAG00000008185) #23	Kat7 (ENSJJAG00000010625) #25	Fam117a (ENSJJAG00000008152) #26	Slc35b1 (ENSJJAG00000003707) #27	Spop (ENSJJAG00000004272) #28	Nxph3 (ENSJJAG00000002621) #29	Ngfr (ENSJJAG00000003615) #30	ENSJJAG00000009251 #31	ENSJJAG00000006327	Zfp652 (ENSJJAG00000010496) #32	Phospho1 (ENSJJAG00000010499) #33	Abi3 (ENSJJAG00000002821) #34	Gngt2 (ENSJJAG00000002044) #35	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322) #36
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Naked mole-rat female	MODERN SPECIES	12	ACSF2 (ENSHGLG00000011512)	CHAD (ENSHGLG00000012429) #10	LRRC59 (ENSHGLG00000048759) #11	EME1 (ENSHGLG00000019198) #12	MRPL27 (ENSHGLG00000016030) #13	XYLT2 (ENSHGLG00000019283) #14	ENSHGLG00000014714	ENSHGLG00000038977 #15	COL1A1 (ENSHGLG00000012240) #16	ENSHGLG00000050519	SGCA (ENSHGLG00000014247) #17	PPP1R9B (ENSHGLG00000014173) #18	SAMD14 (ENSHGLG00000019370) #19	ENSHGLG00000014448 #20	ITGA3 (ENSHGLG00000012904) #21	DLX3 (ENSHGLG00000013267) #22	ENSHGLG00000012373 #23	ENSHGLG00000041037 #24	KAT7 (ENSHGLG00000012906) #25	FAM117A (ENSHGLG00000013356) #26	SLC35B1 (ENSHGLG00000041055) #27	SPOP (ENSHGLG00000041837) #28	NXPH3 (ENSHGLG00000011832) #29	ENSHGLG00000040671	NGFR (ENSHGLG00000012327) #30	ENSHGLG00000011644 #31	ZNF652 (ENSHGLG00000010452) #32	PHOSPHO1 (ENSHGLG00000011269) #33	ABI3 (ENSHGLG00000012283) #34	GNGT2 (ENSHGLG00000048834) #35	B4GALNT2 (ENSHGLG00000011792) #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000158217 #7	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Guinea pig	MODERN SPECIES	53	EPN3 (ENSCPOG00000020362) #7	MYCBPAP (ENSCPOG00000013284) #8	RSAD1 (ENSCPOG00000034976) #9	ACSF2 (ENSCPOG00000013278)	CHAD (ENSCPOG00000032331) #10	LRRC59 (ENSCPOG00000036326) #11	EME1 (ENSCPOG00000025251) #12	MRPL27 (ENSCPOG00000025999) #13	XYLT2 (ENSCPOG00000013276) #14	COL1A1 (ENSCPOG00000003329) #16	SGCA (ENSCPOG00000031317) #17	PPP1R9B (ENSCPOG00000020296) #18	SAMD14 (ENSCPOG00000034695) #19	PDK2 (ENSCPOG00000021507) #20	ITGA3 (ENSCPOG00000003582) #21	DLX3 (ENSCPOG00000027011) #22	ENSCPOG00000030117 #24	KAT7 (ENSCPOG00000001822) #25	FAM117A (ENSCPOG00000019906) #26	SLC35B1 (ENSCPOG00000003757) #27	SPOP (ENSCPOG00000010810) #28	NXPH3 (ENSCPOG00000037584) #29	NGFR (ENSCPOG00000001114) #30	PHB1 (ENSCPOG00000000430) #31	ZNF652 (ENSCPOG00000039975) #32	PHOSPHO1 (ENSCPOG00000024347) #33	ENSCPOG00000020987 #34	GNGT2 (ENSCPOG00000030054) #35	B4GALNT2 (ENSCPOG00000006191) #36	IGF2BP1 (ENSCPOG00000020174)	GIP (ENSCPOG00000023966)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000158217 #7	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Long-tailed chinchilla	MODERN SPECIES	158	MYCBPAP (ENSCLAG00000013227) #8	RSAD1 (ENSCLAG00000011905) #9	ACSF2 (ENSCLAG00000014340)	CHAD (ENSCLAG00000011933) #10	LRRC59 (ENSCLAG00000012618) #11	EME1 (ENSCLAG00000014745) #12	MRPL27 (ENSCLAG00000012478) #13	XYLT2 (ENSCLAG00000013675) #14	COL1A1 (ENSCLAG00000016259) #16	ENSCLAG00000015566 #17	ENSCLAG00000015827 #17	PPP1R9B (ENSCLAG00000012282) #18	SAMD14 (ENSCLAG00000014202) #19	PDK2 (ENSCLAG00000012203) #20	ITGA3 (ENSCLAG00000015971) #21	DLX3 (ENSCLAG00000013654) #22	DLX4 (ENSCLAG00000014126) #23	KAT7 (ENSCLAG00000013168) #25	FAM117A (ENSCLAG00000014145) #26	SLC35B1 (ENSCLAG00000014530) #27	SPOP (ENSCLAG00000014002) #28	NXPH3 (ENSCLAG00000014709) #29	NGFR (ENSCLAG00000015829) #30	PHB1 (ENSCLAG00000013248) #31	ZNF652 (ENSCLAG00000013368) #32	PHOSPHO1 (ENSCLAG00000015042) #33	ABI3 (ENSCLAG00000015475) #34	GNGT2 (ENSCLAG00000014970) #35	B4GALNT2 (ENSCLAG00000016224) #36	IGF2BP1 (ENSCLAG00000015853)	ENSCLAG00000014301
Degu	MODERN SPECIES	97	EPN3 (ENSODEG00000016963) #7	MYCBPAP (ENSODEG00000017339) #8	ENSODEG00000016573 #9	ACSF2 (ENSODEG00000016960)	CHAD (ENSODEG00000016909) #10	LRRC59 (ENSODEG00000016947) #11	EME1 (ENSODEG00000016701) #12	MRPL27 (ENSODEG00000016720) #13	XYLT2 (ENSODEG00000016876) #14	COL1A1 (ENSODEG00000017010) #16	SGCA (ENSODEG00000016840) #17	PPP1R9B (ENSODEG00000017914) #18	SAMD14 (ENSODEG00000017349) #19	PDK2 (ENSODEG00000016830) #20	ITGA3 (ENSODEG00000017066) #21	DLX3 (ENSODEG00000016990) #22	DLX4 (ENSODEG00000017011) #23	ENSODEG00000017148	KAT7 (ENSODEG00000016946) #25	FAM117A (ENSODEG00000016996) #26	SLC35B1 (ENSODEG00000016918) #27	ENSODEG00000017139 #28	NXPH3 (ENSODEG00000017090) #29	NGFR (ENSODEG00000017226) #30	ENSODEG00000017118 #31	ENSODEG00000020479	ZNF652 (ENSODEG00000017173) #32	PHOSPHO1 (ENSODEG00000017221) #33	ABI3 (ENSODEG00000017358) #34	GNGT2 (ENSODEG00000017526) #35	B4GALNT2 (ENSODEG00000018456) #36
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Marmotini	ANCESTRAL SPECIES	8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.g #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.g #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Arctic ground squirrel	MODERN SPECIES	46	MYCBPAP (ENSUPAG00010005269) #8	RSAD1 (ENSUPAG00010005559) #9	ACSF2 (ENSUPAG00010005567)	CHAD (ENSUPAG00010005568) #10	LRRC59 (ENSUPAG00010005570) #11	EME1 (ENSUPAG00010005578) #12	MRPL27 (ENSUPAG00010005589) #13	XYLT2 (ENSUPAG00010005593) #14	COL1A1 (ENSUPAG00010005604) #16	SGCA (ENSUPAG00010005661) #17	ENSUPAG00010005686	PPP1R9B (ENSUPAG00010005692) #18	SAMD14 (ENSUPAG00010005699) #19	PDK2 (ENSUPAG00010005730) #20	ITGA3 (ENSUPAG00010005752) #21	DLX3 (ENSUPAG00010005796) #22	DLX4 (ENSUPAG00010005802) #23	ENSUPAG00010005806 #24	KAT7 (ENSUPAG00010005813) #25	ENSUPAG00010005976 #26	SLC35B1 (ENSUPAG00010005981) #27	SPOP (ENSUPAG00010005991) #28	NXPH3 (ENSUPAG00010006022) #29	NGFR (ENSUPAG00010006025) #30	PHB1 (ENSUPAG00010006031) #31	ZNF652 (ENSUPAG00010006043) #32	PHOSPHO1 (ENSUPAG00010006065) #33	ABI3 (ENSUPAG00010006071) #34	GNGT2 (ENSUPAG00010006078) #35	B4GALNT2 (ENSUPAG00010006086) #36	IGF2BP1 (ENSUPAG00010006100)
Squirrel	MODERN SPECIES	90	MYCBPAP (ENSSTOG00000011746) #8	RSAD1 (ENSSTOG00000011733) #9	ACSF2 (ENSSTOG00000011724)	CHAD (ENSSTOG00000011729) #10	LRRC59 (ENSSTOG00000008913) #11	EME1 (ENSSTOG00000008904) #12	MRPL27 (ENSSTOG00000008896) #13	XYLT2 (ENSSTOG00000008881) #14	COL1A1 (ENSSTOG00000001973) #16	SGCA (ENSSTOG00000024920) #17	ENSSTOG00000024093	ENSSTOG00000022256 #18	SAMD14 (ENSSTOG00000014861) #19	PDK2 (ENSSTOG00000014856) #20	ITGA3 (ENSSTOG00000014843) #21	DLX3 (ENSSTOG00000010314) #22	DLX4 (ENSSTOG00000026218) #23	ENSSTOG00000007934 #24	KAT7 (ENSSTOG00000021252) #25	FAM117A (ENSSTOG00000007894) #26	SLC35B1 (ENSSTOG00000007868) #27	SPOP (ENSSTOG00000007851) #28	NXPH3 (ENSSTOG00000023834) #29	NGFR (ENSSTOG00000007836) #30	ENSSTOG00000019929 #31	ZNF652 (ENSSTOG00000011303) #32	PHOSPHO1 (ENSSTOG00000007651) #33	ABI3 (ENSSTOG00000020017) #34	GNGT2 (ENSSTOG00000007644) #35	B4GALNT2 (ENSSTOG00000007604) #36	IGF2BP1 (ENSSTOG00000010643)
Alpin marmot	MODERN SPECIES	42	RSAD1 (ENSMMMG00000022425) #9	ACSF2 (ENSMMMG00000022430)	CHAD (ENSMMMG00000022440) #10	LRRC59 (ENSMMMG00000022449) #11	EME1 (ENSMMMG00000022456) #12	MRPL27 (ENSMMMG00000022462) #13	XYLT2 (ENSMMMG00000022476) #14	TMEM92 (ENSMMMG00000022692) #15	COL1A1 (ENSMMMG00000022693) #16	ENSMMMG00000022701	SGCA (ENSMMMG00000022707) #17	PPP1R9B (ENSMMMG00000022710) #18	SAMD14 (ENSMMMG00000022727) #19	PDK2 (ENSMMMG00000022729) #20	ITGA3 (ENSMMMG00000022740) #21	DLX3 (ENSMMMG00000022760) #22	DLX4 (ENSMMMG00000022762) #23	ENSMMMG00000000100 #25	FAM117A (ENSMMMG00000000258) #26	SLC35B1 (ENSMMMG00000000273) #27	ENSMMMG00000000303 #28	ENSMMMG00000000355	NXPH3 (ENSMMMG00000000359) #29	NGFR (ENSMMMG00000000369) #30	PHB1 (ENSMMMG00000000385) #31	ZNF652 (ENSMMMG00000000403) #32	PHOSPHO1 (ENSMMMG00000000434) #33	ABI3 (ENSMMMG00000000452) #34	GNGT2 (ENSMMMG00000000525) #35	B4GALNT2 (ENSMMMG00000000569) #36	IGF2BP1 (ENSMMMG00000000613)
Eurasian red squirrel	MODERN SPECIES	12	RSAD1 (ENSSVLG00005001112) #9	CHAD (ENSSVLG00005001097) #10	ACSF2 (ENSSVLG00005001048)	ENSSVLG00005000994 #11	EME1 (ENSSVLG00005000966) #12	MRPL27 (ENSSVLG00005000947) #13	XYLT2 (ENSSVLG00005000923) #14	TMEM92 (ENSSVLG00005000899) #15	COL1A1 (ENSSVLG00005000823) #16	ENSSVLG00005000770	SGCA (ENSSVLG00005000732) #17	PPP1R9B (ENSSVLG00005000675) #18	SAMD14 (ENSSVLG00005000645) #19	PDK2 (ENSSVLG00005000596) #20	ITGA3 (ENSSVLG00005000491) #21	DLX3 (ENSSVLG00005000383) #22	DLX4 (ENSSVLG00005000355) #23	TAC4 (ENSSVLG00005000289) #24	KAT7 (ENSSVLG00005000205) #25	ENSSVLG00005021540 #26	SLC35B1 (ENSSVLG00005021505) #27	SPOP (ENSSVLG00005021469) #28	NXPH3 (ENSSVLG00005021450) #29	NGFR (ENSSVLG00005021364) #30	PHB1 (ENSSVLG00005021310) #31	ZNF652 (ENSSVLG00005021244) #32	ENSSVLG00005021191 #33	ABI3 (ENSSVLG00005021097) #34	GNGT2 (ENSSVLG00005021063) #35	B4GALNT2 (ENSSVLG00005020850) #36	IGF2BP1 (ENSSVLG00005020596)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158951 #22
Hedgehog	MODERN SPECIES	4734																DLX3 (ENSEEUG00000015157) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Carnivora	ANCESTRAL SPECIES	9	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Caniformia	ANCESTRAL SPECIES	6	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Ferret	MODERN SPECIES	270	MYCBPAP (ENSMPUG00000015480) #8	RSAD1 (ENSMPUG00000015479) #9	CHAD (ENSMPUG00000015476) #10	ACSF2 (ENSMPUG00000015456)	LRRC59 (ENSMPUG00000015455) #11	EME1 (ENSMPUG00000015450) #12	MRPL27 (ENSMPUG00000015445) #13	XYLT2 (ENSMPUG00000015443) #14	TMEM92 (ENSMPUG00000015441) #15	COL1A1 (ENSMPUG00000015438) #16	SGCA (ENSMPUG00000015419) #17	PPP1R9B (ENSMPUG00000015418) #18	SAMD14 (ENSMPUG00000015417) #19	PDK2 (ENSMPUG00000015416) #20	ITGA3 (ENSMPUG00000015414) #21	DLX3 (ENSMPUG00000015413) #22	DLX4 (ENSMPUG00000015410) #23	KAT7 (ENSMPUG00000015409) #25	FAM117A (ENSMPUG00000015406) #26	SLC35B1 (ENSMPUG00000015392) #27	SPOP (ENSMPUG00000015389) #28	NXPH3 (ENSMPUG00000015386) #29	ENSMPUG00000015387	NGFR (ENSMPUG00000015384) #30	PHB1 (ENSMPUG00000015381) #31	ZNF652 (ENSMPUG00000015376) #32	PHOSPHO1 (ENSMPUG00000015375) #33	ABI3 (ENSMPUG00000015374) #34	B4GALNT2 (ENSMPUG00000015373) #36	IGF2BP1 (ENSMPUG00000015358)	GIP (ENSMPUG00000015357)
American mink	MODERN SPECIES	92	RSAD1 (ENSNVIG00000007570) #9	CHAD (ENSNVIG00000007549) #10	ACSF2 (ENSNVIG00000007468)	LRRC59 (ENSNVIG00000007451) #11	EME1 (ENSNVIG00000007424) #12	MRPL27 (ENSNVIG00000007388) #13	XYLT2 (ENSNVIG00000007249) #14	TMM92 (ENSNVIG00000007219) #15	COL1A1 (ENSNVIG00000007125) #16	ENSNVIG00000007112	SGCA (ENSNVIG00000007083) #17	PPP1R9B (ENSNVIG00000007068) #18	SAMD14 (ENSNVIG00000007053) #19	PDK2 (ENSNVIG00000007031) #20	ITGA3 (ENSNVIG00000006930) #21	DLX3 (ENSNVIG00000006907) #22	DLX4 (ENSNVIG00000006893) #23	TAC4 (ENSNVIG00000006873) #24	KAT7 (ENSNVIG00000006694) #25	FAM117A (ENSNVIG00000006664) #26	SLC35B1 (ENSNVIG00000006645) #27	SPOP (ENSNVIG00000006608) #28	NXPH3 (ENSNVIG00000006600) #29	NGFR (ENSNVIG00000006576) #30	PHB1 (ENSNVIG00000006553) #31	ZNF652 (ENSNVIG00000006521) #32	PHOSPHO1 (ENSNVIG00000006507) #33	ABI3 (ENSNVIG00000006479) #34	GNGT2 (ENSNVIG00000006461) #35	B4GALNT2 (ENSNVIG00000006432) #36	IGF2BP1 (ENSNVIG00000006377)
Ursidae	ANCESTRAL SPECIES	18	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36
Ursus	ANCESTRAL SPECIES	67	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36	ENSGT00940000160427
American black bear	MODERN SPECIES	2872															ITGA3 (ENSUAMG00000014271) #21	DLX3 (ENSUAMG00000014269) #22	DLX4 (ENSUAMG00000014268) #23
Giant Panda	MODERN SPECIES	4	RSAD1 (ENSAMEG00000011792) #9	ACSF2 (ENSAMEG00000011804)	CHAD (ENSAMEG00000011848) #10	LRRC59 (ENSAMEG00000011852) #11	EME1 (ENSAMEG00000011867) #12	MRPL27 (ENSAMEG00000011876) #13	XYLT2 (ENSAMEG00000011879) #14	ENSAMEG00000026544 #15	COL1A1 (ENSAMEG00000011903) #16	SGCA (ENSAMEG00000012057) #17	ENSAMEG00000012076	PPP1R9B (ENSAMEG00000012080) #18	SAMD14 (ENSAMEG00000012100) #19	PDK2 (ENSAMEG00000012109) #20	ITGA3 (ENSAMEG00000012157) #21	DLX3 (ENSAMEG00000030071) #22	DLX4 (ENSAMEG00000012238) #23	TAC4 (ENSAMEG00000030850) #24	KAT7 (ENSAMEG00000012243) #25	FAM117A (ENSAMEG00000012286) #26	SLC35B1 (ENSAMEG00000012292) #27	SPOP (ENSAMEG00000012318) #28	ENSAMEG00000027101	NXPH3 (ENSAMEG00000026422) #29	NGFR (ENSAMEG00000012352) #30	PHB1 (ENSAMEG00000012364) #31	ZNF652 (ENSAMEG00000012387) #32	PHOSPHO1 (ENSAMEG00000031233) #33	ABI3 (ENSAMEG00000005141) #34	GNGT2 (ENSAMEG00000005139) #35	B4GALNT2 (ENSAMEG00000005108) #36
Canidae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Dingo	MODERN SPECIES	150	RSAD1 (ENSCAFG00020023548) #9	CHAD (ENSCAFG00020023544) #10	ACSF2 (ENSCAFG00020023536)	LRRC59 (ENSCAFG00020023533) #11	EME1 (ENSCAFG00020023528) #12	ENSCAFG00020023525 #13	XYLT2 (ENSCAFG00020023521) #14	TMEM92 (ENSCAFG00020023519) #15	COL1A1 (ENSCAFG00020023500) #16	ENSCAFG00020023495	SGCA (ENSCAFG00020023493) #17	PPP1R9B (ENSCAFG00020023485) #18	SAMD14 (ENSCAFG00020023482) #19	PDK2 (ENSCAFG00020023478) #20	ITGA3 (ENSCAFG00020023474) #21	DLX3 (ENSCAFG00020023473) #22	DLX4 (ENSCAFG00020023471) #23	ENSCAFG00020023469 #24	KAT7 (ENSCAFG00020023453) #25	FAM117A (ENSCAFG00020023448) #26	SLC35B1 (ENSCAFG00020023446) #27	SPOP (ENSCAFG00020023443) #28	NXPH3 (ENSCAFG00020023441) #29	NGFR (ENSCAFG00020023430) #30	ENSCAFG00020023425 #31	ZNF652 (ENSCAFG00020023420) #32	PHOSPHO1 (ENSCAFG00020023419) #33	ABI3 (ENSCAFG00020023410) #34	GNGT2 (ENSCAFG00020023405) #35	B4GALNT2 (ENSCAFG00020023386) #36	ENSCAFG00020023382
Dog	MODERN SPECIES	37	RSAD1 (ENSCAFG00845012992) #9	CHAD (ENSCAFG00845012965) #10	CACNA1G (ENSCAFG00845012854)	LRRC59 (ENSCAFG00845012791) #11	EME1 (ENSCAFG00845012727) #12	MRPL27 (ENSCAFG00845012696) #13	XYLT2 (ENSCAFG00845012646) #14	TMEM92 (ENSCAFG00845012596) #15	COL1A1 (ENSCAFG00845012504) #16	ENSCAFG00845012468	SGCA (ENSCAFG00845012386) #17	PPP1R9B (ENSCAFG00845012234) #18	SAMD14 (ENSCAFG00845012179) #19	PDK2 (ENSCAFG00845012105) #20	ITGA3 (ENSCAFG00845011823) #21	DLX3 (ENSCAFG00845011753) #22	DLX4 (ENSCAFG00845011727) #23	TAC4 (ENSCAFG00845011705) #24	KAT7 (ENSCAFG00845011515) #25	FAM117A (ENSCAFG00845011405) #26	SLC35B1 (ENSCAFG00845011328) #27	SPOP (ENSCAFG00845011227) #28	NXPH3 (ENSCAFG00845011191) #29	NGFR (ENSCAFG00845011173) #30	ZNF652 (ENSCAFG00845011079) #32	PHB1 (ENSCAFG00845010966) #31	PHOSPHO1 (ENSCAFG00845010884) #33	ABI3 (ENSCAFG00845010830) #34	ENSCAFG00845010742 #31	B4GALNT2 (ENSCAFG00845010693) #36	IGF2BP1 (ENSCAFG00845010596)
Red fox	MODERN SPECIES	20	RSAD1 (ENSVVUG00000004823) #9	CHAD (ENSVVUG00000004817) #10	ACSF2 (ENSVVUG00000004793)	LRRC59 (ENSVVUG00000004778) #11	EME1 (ENSVVUG00000004766) #12	ENSVVUG00000004759	XYLT2 (ENSVVUG00000004748) #14	TMEM92 (ENSVVUG00000004742) #15	COL1A1 (ENSVVUG00000004354) #16	ENSVVUG00000004316	SGCA (ENSVVUG00000004312) #17	PPP1R9B (ENSVVUG00000004297) #18	SAMD14 (ENSVVUG00000004274) #19	PDK2 (ENSVVUG00000004251) #20	ITGA3 (ENSVVUG00000004205) #21	DLX3 (ENSVVUG00000004195) #22	DLX4 (ENSVVUG00000004191) #23	KAT7 (ENSVVUG00000003710) #25	FAM117A (ENSVVUG00000003675) #26	SLC35B1 (ENSVVUG00000003665) #27	SPOP (ENSVVUG00000003631) #28	NXPH3 (ENSVVUG00000003626) #29	NGFR (ENSVVUG00000003610) #30	ENSVVUG00000003547 #31	ZNF652 (ENSVVUG00000003513) #32	PHOSPHO1 (ENSVVUG00000003505) #33	ABI3 (ENSVVUG00000003493) #34	GNGT2 (ENSVVUG00000003489) #35	B4GALNT2 (ENSVVUG00000003458) #36	ENSVVUG00000003456 #31	IGF2BP1 (ENSVVUG00000003451)
Felidae	ANCESTRAL SPECIES	8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cat	MODERN SPECIES	245	RSAD1 (ENSFCAG00000012335) #9	ACSF2 (ENSFCAG00000012334)	CHAD (ENSFCAG00000011301) #10	LRRC59 (ENSFCAG00000031770) #11	EME1 (ENSFCAG00000012332) #12	MRPL27 (ENSFCAG00000037928) #13	XYLT2 (ENSFCAG00000012330) #14	TMEM92 (ENSFCAG00000042623) #15	COL1A1 (ENSFCAG00000004564) #16	SGCA (ENSFCAG00000004560) #17	H1-9 (ENSFCAG00000053017)	PPP1R9B (ENSFCAG00000026527) #18	SAMD14 (ENSFCAG00000039819) #19	PDK2 (ENSFCAG00000009633) #20	ITGA3 (ENSFCAG00000004558) #21	DLX3 (ENSFCAG00000044465) #22	DLX4 (ENSFCAG00000019055) #23	TAC4 (ENSFCAG00000002641) #24	KAT7 (ENSFCAG00000002640) #25	FAM117A (ENSFCAG00000002639) #26	SPOP (ENSFCAG00000002637) #28	NXPH3 (ENSFCAG00000002636) #29	NGFR (ENSFCAG00000046296) #30	PHB1 (ENSFCAG00000042904) #31	ZNF652 (ENSFCAG00000000115) #32	PHOSPHO1 (ENSFCAG00000000113) #33	ABI3 (ENSFCAG00000018571) #34	GNGT2 (ENSFCAG00000039268) #35	B4GALNT2 (ENSFCAG00000018523) #36	IGF2BP1 (ENSFCAG00000002454)	GIP (ENSFCAG00000008946)
Panthera	ANCESTRAL SPECIES	14	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
leopard	MODERN SPECIES	67	MYCBPAP (ENSPPRG00000020455) #8	RSAD1 (ENSPPRG00000014726) #9	ACSF2 (ENSPPRG00000013112)	CHAD (ENSPPRG00000011428) #10	LRRC59 (ENSPPRG00000010949) #11	EME1 (ENSPPRG00000010883) #12	MRPL27 (ENSPPRG00000009444) #13	XYLT2 (ENSPPRG00000009115) #14	TMEM92 (ENSPPRG00000007766) #15	COL1A1 (ENSPPRG00000006898) #16	SGCA (ENSPPRG00000006346) #17	PPP1R9B (ENSPPRG00000002645) #18	SAMD14 (ENSPPRG00000002112) #19	PDK2 (ENSPPRG00000001480) #20	ITGA3 (ENSPPRG00000000879) #21	DLX3 (ENSPPRG00000023791) #22	DLX4 (ENSPPRG00000023879) #23	KAT7 (ENSPPRG00000024404) #25	FAM117A (ENSPPRG00000017338) #26	SLC35B1 (ENSPPRG00000014682) #27	SPOP (ENSPPRG00000014269) #28	NXPH3 (ENSPPRG00000013606) #29	NGFR (ENSPPRG00000013448) #30	PHB1 (ENSPPRG00000012902) #31	ZNF652 (ENSPPRG00000011680) #32	PHOSPHO1 (ENSPPRG00000010125) #33	ABI3 (ENSPPRG00000009966) #34	GNGT2 (ENSPPRG00000009442) #35	B4GALNT2 (ENSPPRG00000008636) #36	IGF2BP1 (ENSPPRG00000008067)	GIP (ENSPPRG00000007119)
lion	MODERN SPECIES	14	MYCBPAP (ENSPLOG00000018604) #8	RSAD1 (ENSPLOG00000018765) #9	ACSF2 (ENSPLOG00000018860)	CHAD (ENSPLOG00000018910) #10	LRRC59 (ENSPLOG00000018949) #11	EME1 (ENSPLOG00000018985) #12	MRPL27 (ENSPLOG00000019107) #13	XYLT2 (ENSPLOG00000019251) #14	TMEM92 (ENSPLOG00000019296) #15	COL1A1 (ENSPLOG00000019378) #16	SGCA (ENSPLOG00000019756) #17	PPP1R9B (ENSPLOG00000019903) #18	SAMD14 (ENSPLOG00000019994) #19	PDK2 (ENSPLOG00000020045) #20	ITGA3 (ENSPLOG00000020140) #21	DLX3 (ENSPLOG00000020385) #22	DLX4 (ENSPLOG00000020407) #23	TAC4 (ENSPLOG00000020433) #24	KAT7 (ENSPLOG00000020520) #25	FAM117A (ENSPLOG00000020662) #26	SPOP (ENSPLOG00000020757) #28	NXPH3 (ENSPLOG00000020789) #29	NGFR (ENSPLOG00000020808) #30	PHB1 (ENSPLOG00000020854) #31	ZNF652 (ENSPLOG00000020894) #32	PHOSPHO1 (ENSPLOG00000020920) #33	ABI3 (ENSPLOG00000020951) #34	GNGT2 (ENSPLOG00000020997) #35	B4GALNT2 (ENSPLOG00000021030) #36	IGF2BP1 (ENSPLOG00000021207)	GIP (ENSPLOG00000021311)
Tiger	DUPLICATION
Tiger	MODERN SPECIES	230																ENSPTIG00000008120 #22	DLX4 (ENSPTIG00000008632) #23	TAC4 (ENSPTIG00000009789) #24	KAT7 (ENSPTIG00000011639) #25	FAM117A (ENSPTIG00000018860) #26	ENSPTIG00000019125	SLC35B1 (ENSPTIG00000019637) #27	SPOP (ENSPTIG00000019935) #28	NXPH3 (ENSPTIG00000000016) #29	ENSPTIG00000005161 #30	PHB1 (ENSPTIG00000008349) #31	ZNF652 (ENSPTIG00000010615) #32	ABI3 (ENSPTIG00000011177) #34	GNGT2 (ENSPTIG00000011802) #35	B4GALNT2 (ENSPTIG00000012803) #36	IGF2BP1 (ENSPTIG00000013291)
Tiger	MODERN SPECIES	247	ENSPTIG00000018414 #7	MYCBPAP (ENSPTIG00000014495) #8	RSAD1 (ENSPTIG00000013143) #9	CHAD (ENSPTIG00000012789) #10	ACSF2 (ENSPTIG00000006315)	LRRC59 (ENSPTIG00000005798) #11	EME1 (ENSPTIG00000019912) #12	MRPL27 (ENSPTIG00000019684) #13	XYLT2 (ENSPTIG00000018441) #14	TMEM92 (ENSPTIG00000017009) #15	COL1A1 (ENSPTIG00000014103) #16	SGCA (ENSPTIG00000012125) #17	ENSPTIG00000011358 #18	PDK2 (ENSPTIG00000008139) #20	ITGA3 (ENSPTIG00000019020) #21	ENSPTIG00000018729 #22
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Equus	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385.o #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Horse	MODERN SPECIES	2	RSAD1 (ENSECAG00000023248) #9	CHAD (ENSECAG00000053781) #10	ACSF2 (ENSECAG00000019245)	ENSECAG00000018072 #11	MRPL27 (ENSECAG00000016779) #13	EME1 (ENSECAG00000017079) #12	XYLT2 (ENSECAG00000012454) #14	TMEM92 (ENSECAG00000012367) #15	COL1A1 (ENSECAG00000013693) #16	ENSECAG00000050948	SGCA (ENSECAG00000047470) #17	PPP1R9B (ENSECAG00000011107) #18	SAMD14 (ENSECAG00000008063) #19	PDK2 (ENSECAG00000022822) #20	ITGA3 (ENSECAG00000015760) #21	DLX3 (ENSECAG00000014884) #22	DLX4 (ENSECAG00000033703) #23	TAC4 (ENSECAG00000014863) #24	KAT7 (ENSECAG00000010150) #25	FAM117A (ENSECAG00000008346) #26	SPOP (ENSECAG00000018287) #28	NXPH3 (ENSECAG00000017359) #29	PHB1 (ENSECAG00000017769) #31	ZNF652 (ENSECAG00000016968) #32	PHOSPHO1 (ENSECAG00000016583) #33	ABI3 (ENSECAG00000016070) #30	GNGT2 (ENSECAG00000016054) #35	B4GALNT2 (ENSECAG00000013354) #36	IGF2BP1 (ENSECAG00000009723)	GIP (ENSECAG00000008172)	ENSECAG00000046431
Donkey	MODERN SPECIES	4	RSAD1 (ENSEASG00005018609) #9	ACSF2 (ENSEASG00005018611)	CHAD (ENSEASG00005018613) #10	ENSEASG00005018614 #11	EME1 (ENSEASG00005018615) #12	MRPL27 (ENSEASG00005024935) #13	XYLT2 (ENSEASG00005018617) #14	ENSEASG00005018618 #15	COL1A1 (ENSEASG00005018620) #16	ENSEASG00005026086	SGCA (ENSEASG00005018622) #17	PPP1R9B (ENSEASG00005018624) #18	SAMD14 (ENSEASG00005018625) #19	PDK2 (ENSEASG00005018626) #20	ITGA3 (ENSEASG00005018627) #21	DLX3 (ENSEASG00005031122) #22	DLX4 (ENSEASG00005035049) #23	ENSEASG00005027650 #24	KAT7 (ENSEASG00005018633) #25	FAM117A (ENSEASG00005018634) #26	SLC35B1 (ENSEASG00005018635) #27	SPOP (ENSEASG00005018636) #28	NXPH3 (ENSEASG00005037665) #29	NGFR (ENSEASG00005000062) #30	PHB1 (ENSEASG00005000226) #31	ZNF652 (ENSEASG00005000231) #32	PHOSPHO1 (ENSEASG00005036161) #33	ABI3 (ENSEASG00005000248) #34	ENSEASG00005037167 #35	B4GALNT2 (ENSEASG00005000271) #36	IGF2BP1 (ENSEASG00005000301)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Megabat	MODERN SPECIES	3947													SAMD14 (ENSPVAG00000006866) #19	PDK2 (ENSPVAG00000006864) #20	ITGA3 (ENSPVAG00000006860) #21	DLX3 (ENSPVAG00000006857) #22	DLX4 (ENSPVAG00000006856) #23
Microchiroptera	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Microbat	MODERN SPECIES	1583		ENSMLUG00000005551	LRRC59 (ENSMLUG00000005547) #11	EME1 (ENSMLUG00000005541) #12	MRPL27 (ENSMLUG00000005539) #13	XYLT2 (ENSMLUG00000005532) #14	ENSMLUG00000022739	ENSMLUG00000025931	COL1A1 (ENSMLUG00000001694) #16	SGCA (ENSMLUG00000028417) #17	PPP1R9B (ENSMLUG00000007345) #18	SAMD14 (ENSMLUG00000007326) #19	PDK2 (ENSMLUG00000007303) #20	ITGA3 (ENSMLUG00000005049) #21	ENSMLUG00000004517	DLX3 (ENSMLUG00000007297) #22
Greater horseshoe bat	MODERN SPECIES	13	RSAD1 (ENSRFEG00010021041) #9	ACSF2 (ENSRFEG00010021075)	CHAD (ENSRFEG00010021182) #10	LRRC59 (ENSRFEG00010021200) #11	EME1 (ENSRFEG00010021215) #12	MRPL27 (ENSRFEG00010021224) #13	XYLT2 (ENSRFEG00010021240) #14	TMEM92 (ENSRFEG00010021258) #15	COL1A1 (ENSRFEG00010021284) #16	SGCA (ENSRFEG00010021307) #17	ENSRFEG00010021332	PPP1R9B (ENSRFEG00010021343) #18	SAMD14 (ENSRFEG00010021360) #19	PDK2 (ENSRFEG00010021373) #20	ITGA3 (ENSRFEG00010021408) #21	DLX3 (ENSRFEG00010021445) #22	DLX4 (ENSRFEG00010021455) #23	TAC4 (ENSRFEG00010021468) #24	KAT7 (ENSRFEG00010021504) #25	FAM117A (ENSRFEG00010021534) #26	SLC35B1 (ENSRFEG00010021552) #27	SPOP (ENSRFEG00010021569) #28	ENSRFEG00010021578	NXPH3 (ENSRFEG00010021588) #29	NGFR (ENSRFEG00010021593) #30	ENSRFEG00010021606 #31	ZNF652 (ENSRFEG00010021620) #32	PHOSPHO1 (ENSRFEG00010021635) #33	ABI3 (ENSRFEG00010021659) #34	GNGT2 (ENSRFEG00010021682) #35	B4GALNT2 (ENSRFEG00010021694) #36
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Suina	ANCESTRAL SPECIES		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Pig	MODERN SPECIES	3	LRRC59 (ENSSSCG00000028019) #11	EME1 (ENSSSCG00000017571) #12	ENSSSCG00000061531	MRPL27 (ENSSSCG00000023783) #13	XYLT2 (ENSSSCG00000017573) #14	ENSSSCG00000028962	ENSSSCG00000039259	TMEM92 (ENSSSCG00000037168) #15	COL1A1 (ENSSSCG00000036135) #16	ENSSSCG00000031307	SGCA (ENSSSCG00000017583) #17	PPP1R9B (ENSSSCG00000017584) #18	SAMD14 (ENSSSCG00000017585) #19	PDK2 (ENSSSCG00000027198) #20	ITGA3 (ENSSSCG00000017578) #21	DLX3 (ENSSSCG00000017589) #22	DLX4 (ENSSSCG00000034653) #23	TAC4 (ENSSSCG00000038057) #24	KAT7 (ENSSSCG00000017553) #25	FAM117A (ENSSSCG00000017551) #26	SLC35B1 (ENSSSCG00000033731) #27	SPOP (ENSSSCG00000020796) #28	ENSSSCG00000033501	NXPH3 (ENSSSCG00000017552) #29	NGFR (ENSSSCG00000017548) #30	PHB1 (ENSSSCG00000017549) #31	ZNF652 (ENSSSCG00000017546) #32	ENSSSCG00000026701 #33	ENSSSCG00000035224 #34	ENSSSCG00000045794 #35	ENSSSCG00000048918 #36
Chacoan peccary	MODERN SPECIES	145	CHAD (ENSCWAG00000021977) #10	LRRC59 (ENSCWAG00000021978) #11	EME1 (ENSCWAG00000021979) #12	MRPL27 (ENSCWAG00000021980) #13	XYLT2 (ENSCWAG00000021981) #14	RDM1 (ENSCWAG00000021985)	TMEM92 (ENSCWAG00000021987) #15	COL1A1 (ENSCWAG00000021989) #16	SGCA (ENSCWAG00000021996) #17	ENSCWAG00000021999	ENSCWAG00000022000 #18	ENSCWAG00000022001 #18	SAMD14 (ENSCWAG00000022002) #19	PDK2 (ENSCWAG00000022006) #20	ITGA3 (ENSCWAG00000022008) #21	DLX3 (ENSCWAG00000022010) #22	DLX4 (ENSCWAG00000022011) #23	ENSCWAG00000022012 #24	KAT7 (ENSCWAG00000022020) #25	ENSCWAG00000022022	FAM117A (ENSCWAG00000022023) #26	SLC35B1 (ENSCWAG00000022025) #27	SPOP (ENSCWAG00000022026) #28	ENSCWAG00000022027	NXPH3 (ENSCWAG00000022028) #29	NGFR (ENSCWAG00000022030) #30	PHB1 (ENSCWAG00000022033) #31	ZNF652 (ENSCWAG00000022035) #32	PHOSPHO1 (ENSCWAG00000022036) #33	ABI3 (ENSCWAG00000022038) #34	GNGT2 (ENSCWAG00000022039) #35
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Camelidae	ANCESTRAL SPECIES	110									ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30
Arabian camel	MODERN SPECIES	7	B4GALNT2 (ENSCDRG00005016644) #36	ENSCDRG00005016619 #35	ABI3 (ENSCDRG00005016559) #34	PHOSPHO1 (ENSCDRG00005016526) #33	ZNF652 (ENSCDRG00005016507) #32	ENSCDRG00005016485 #31	TMEM92 (ENSCDRG00005016425) #15	ENSCDRG00005016412	COL1A1 (ENSCDRG00005012316) #16	ENSCDRG00005012081	SGCA (ENSCDRG00005011958) #17	PPP1R9B (ENSCDRG00005011814) #18	SAMD14 (ENSCDRG00005011730) #19	PDK2 (ENSCDRG00005011691) #20	ITGA3 (ENSCDRG00005011434) #21	DLX3 (ENSCDRG00005011379) #22	DLX4 (ENSCDRG00005011355) #23	TAC4 (ENSCDRG00005010878) #24	KAT7 (ENSCDRG00005010423) #25	FAM117A (ENSCDRG00005010358) #26	SLC35B1 (ENSCDRG00005010268) #27	SPOP (ENSCDRG00005010198) #28	NXPH3 (ENSCDRG00005010150) #29	NGFR (ENSCDRG00005010099) #30	ENSCDRG00005010071	ENSCDRG00005010031	ENSCDRG00005009987	UNC45B (ENSCDRG00005009329)	NLE1 (ENSCDRG00005008920)	FNDC8 (ENSCDRG00005008856)	RAD51D (ENSCDRG00005008720)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Pecora	ANCESTRAL SPECIES	1	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Caprinae	ANCESTRAL SPECIES	1	ENSGT00640000091565 #8	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Goat	MODERN SPECIES	10	MYCBPAP (ENSCHIG00000018463) #8	RSAD1 (ENSCHIG00000024657) #9	ACSF2 (ENSCHIG00000026707)	CHAD (ENSCHIG00000013807) #10	LRRC59 (ENSCHIG00000008137) #11	EME1 (ENSCHIG00000016180) #12	MRPL27 (ENSCHIG00000007881) #13	XYLT2 (ENSCHIG00000018461) #14	ENSCHIG00000018450 #15	COL1A1 (ENSCHIG00000021319) #16	SGCA (ENSCHIG00000014532) #17	PPP1R9B (ENSCHIG00000025841) #18	SAMD14 (ENSCHIG00000018967) #19	PDK2 (ENSCHIG00000022189) #20	ITGA3 (ENSCHIG00000015227) #21	DLX3 (ENSCHIG00000010709) #22	DLX4 (ENSCHIG00000010948) #23	ENSCHIG00000013763 #24	KAT7 (ENSCHIG00000025815) #25	FAM117A (ENSCHIG00000012977) #26	SLC35B1 (ENSCHIG00000017359) #27	SPOP (ENSCHIG00000016662) #28	NXPH3 (ENSCHIG00000027224) #29	NGFR (ENSCHIG00000019080) #30	PHB1 (ENSCHIG00000012405) #31	ZNF652 (ENSCHIG00000025825) #32	PHOSPHO1 (ENSCHIG00000020131) #33	ABI3 (ENSCHIG00000025692) #34	GNGT2 (ENSCHIG00000022700) #35	B4GALNT2 (ENSCHIG00000013924) #36	IGF2BP1 (ENSCHIG00000022316)
Rambouillet Sheep	MODERN SPECIES	2	ACSF2 (ENSOARG00020013282)	LRRC59 (ENSOARG00020013205) #11	EME1 (ENSOARG00020013136) #12	MRPL27 (ENSOARG00020013058) #13	XYLT2 (ENSOARG00020012883) #14	ENSOARG00020012853	TMEM92 (ENSOARG00020012815) #15	COL1A1 (ENSOARG00020012432) #16	ENSOARG00020012400	ENSOARG00020012345	SGCA (ENSOARG00020012004) #17	PPP1R9B (ENSOARG00020011862) #18	SAMD14 (ENSOARG00020011664) #19	PDK2 (ENSOARG00020011584) #20	ITGA3 (ENSOARG00020011374) #21	DLX3 (ENSOARG00020011314) #22	DLX4 (ENSOARG00020011261) #23	ENSOARG00020011194 #24	KAT7 (ENSOARG00020010890) #25	FAM117A (ENSOARG00020010734) #26	SLC35B1 (ENSOARG00020010577) #27	SPOP (ENSOARG00020010471) #28	NXPH3 (ENSOARG00020010437) #29	NGFR (ENSOARG00020010364) #30	PHB (ENSOARG00020010257) #31	ZNF652 (ENSOARG00020010202) #32	PHOSPHO1 (ENSOARG00020010143) #33	ABI3 (ENSOARG00020010038) #34	GNGT2 (ENSOARG00020009965) #35	B4GALNT2 (ENSOARG00020022870) #36	ENSOARG00020022839
Bovinae	ANCESTRAL SPECIES		ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bos	ANCESTRAL SPECIES	1	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bos_a	ANCESTRAL SPECIES		ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Domestic yak	MODERN SPECIES	10	RSAD1 (ENSBGRG00000006561) #9	CHAD (ENSBGRG00000006506) #10	ACSF2 (ENSBGRG00000006209)	LRRC59 (ENSBGRG00000006181) #11	ENSBGRG00000006118 #12	MRPL27 (ENSBGRG00000006073) #13	XYLT2 (ENSBGRG00000006039) #14	TMEM92 (ENSBGRG00000005968) #15	ENSBGRG00000005548	ENSBGRG00000005480	SGCA (ENSBGRG00000005458) #17	PPP1R9B (ENSBGRG00000005352) #18	SAMD14 (ENSBGRG00000005298) #19	PDK2 (ENSBGRG00000005164) #20	ITGA3 (ENSBGRG00000004960) #21	DLX3 (ENSBGRG00000004899) #22	DLX4 (ENSBGRG00000004841) #23	ENSBGRG00000004821	ENSBGRG00000004724 #24	KAT7 (ENSBGRG00000004007) #25	FAM117A (ENSBGRG00000023813) #26	SLC35B1 (ENSBGRG00000023699) #27	SPOP (ENSBGRG00000023618) #28	NXPH3 (ENSBGRG00000023572) #29	NGFR (ENSBGRG00000023500) #30	PHB1 (ENSBGRG00000023342) #31	ENSBGRG00000023290	ZNF652 (ENSBGRG00000023208) #32	PHOSPHO1 (ENSBGRG00000023170) #33	ABI3 (ENSBGRG00000022961) #34	B4GALNT2 (ENSBGRG00000022672) #36
Wild yak	MODERN SPECIES	319	ACSF2 (ENSBMUG00000022074)	CHAD (ENSBMUG00000022113) #10	LRRC59 (ENSBMUG00000022125) #11	EME1 (ENSBMUG00000022138) #12	MRPL27 (ENSBMUG00000022160) #13	XYLT2 (ENSBMUG00000022230) #14	TMEM92 (ENSBMUG00000022314) #15	ENSBMUG00000022325	COL1A1 (ENSBMUG00000022360) #16	SGCA (ENSBMUG00000022382) #17	ENSBMUG00000022389	ENSBMUG00000022399 #18	SAMD14 (ENSBMUG00000022417) #19	PDK2 (ENSBMUG00000022453) #20	ITGA3 (ENSBMUG00000022523) #21	DLX3 (ENSBMUG00000022535) #22	DLX4 (ENSBMUG00000022545) #23	ENSBMUG00000022551	ENSBMUG00000022574 #24	KAT7 (ENSBMUG00000022650) #25	FAM117A (ENSBMUG00000022672) #26	SLC35B1 (ENSBMUG00000000165) #27	SPOP (ENSBMUG00000000260) #28	NXPH3 (ENSBMUG00000000281) #29	NGFR (ENSBMUG00000000290) #30	PHB1 (ENSBMUG00000000329) #31	ZNF652 (ENSBMUG00000000351) #32	PHOSPHO1 (ENSBMUG00000000370) #33	ABI3 (ENSBMUG00000000408) #34	GNGT2 (ENSBMUG00000000436) #35	B4GALNT2 (ENSBMUG00000000477) #36
Bos_b	ANCESTRAL SPECIES	15	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT01100000266401	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Cow	MODERN SPECIES	10	RSAD1 (ENSBTAG00000021303) #9	ACSF2 (ENSBTAG00000021301)	CHAD (ENSBTAG00000021302) #10	LRRC59 (ENSBTAG00000006072) #11	EME1 (ENSBTAG00000021723) #12	MRPL27 (ENSBTAG00000021720) #13	XYLT2 (ENSBTAG00000009298) #14	TMEM92 (ENSBTAG00000054481) #15	COL1A1 (ENSBTAG00000013103) #16	SGCA (ENSBTAG00000003956) #17	H1-9 (ENSBTAG00000043979)	PPP1R9B (ENSBTAG00000049864) #18	SAMD14 (ENSBTAG00000040521) #19	PDK2 (ENSBTAG00000008744) #20	ITGA3 (ENSBTAG00000019498) #21	DLX3 (ENSBTAG00000017409) #22	DLX4 (ENSBTAG00000007353) #23	ENSBTAG00000045805	ENSBTAG00000049677	KAT7 (ENSBTAG00000018699) #25	FAM117A (ENSBTAG00000006886) #26	SLC35B1 (ENSBTAG00000006881) #27	SPOP (ENSBTAG00000005824) #28	ENSBTAG00000054985	NXPH3 (ENSBTAG00000015293) #29	NGFR (ENSBTAG00000020979) #30	PHB1 (ENSBTAG00000017120) #31	ZNF652 (ENSBTAG00000001919) #32	PHOSPHO1 (ENSBTAG00000000033) #33	ABI3 (ENSBTAG00000000032) #34	GNGT2 (ENSBTAG00000047325) #35
Hybrid Bos Indicus	MODERN SPECIES	10	ACSF2 (ENSBIXG00005009154)	CHAD (ENSBIXG00005009042) #10	LRRC59 (ENSBIXG00005000367) #11	EME1 (ENSBIXG00005009016) #12	MRPL27 (ENSBIXG00005008979) #13	XYLT2 (ENSBIXG00005000349) #14	ENSBIXG00005008911 #15	COL1A1 (ENSBIXG00005008769) #16	SGCA (ENSBIXG00005000219) #17	ENSBIXG00005008532	PPP1R9B (ENSBIXG00005008518) #18	SAMD14 (ENSBIXG00005008496) #19	PDK2 (ENSBIXG00005008472) #20	ITGA3 (ENSBIXG00005008421) #21	ENSBIXG00005005679	DLX3 (ENSBIXG00005008339) #22	DLX4 (ENSBIXG00005000154) #23	ENSBIXG00005000149	ENSBIXG00005008304	KAT7 (ENSBIXG00005008270) #25	FAM117A (ENSBIXG00005000136) #26	SPOP (ENSBIXG00005008142) #28	NXPH3 (ENSBIXG00005008120) #29	NGFR (ENSBIXG00005008101) #30	PHB1 (ENSBIXG00005008066) #31	ZNF652 (ENSBIXG00005008029) #32	PHOSPHO1 (ENSBIXG00005007996) #33	ABI3 (ENSBIXG00005007948) #34	B4GALNT2 (ENSBIXG00005007929) #36	IGF2BP1 (ENSBIXG00005007917)	GIP (ENSBIXG00005007892)
American bison	MODERN SPECIES	3101	CHAD (ENSBBBG00000000642) #10	ACSF2 (ENSBBBG00000000555)	LRRC59 (ENSBBBG00000000544) #11	EME1 (ENSBBBG00000020418) #12	MRPL27 (ENSBBBG00000020427) #13	XYLT2 (ENSBBBG00000020517) #14	TMEM92 (ENSBBBG00000005542) #15	ENSBBBG00000020538	COL1A1 (ENSBBBG00000020594) #16	ENSBBBG00000020655	SGCA (ENSBBBG00000005577) #17	ENSBBBG00000020689 #18	SAMD14 (ENSBBBG00000005584) #19	PDK2 (ENSBBBG00000005588) #20	ITGA3 (ENSBBBG00000020813) #21	DLX3 (ENSBBBG00000020830) #22	DLX4 (ENSBBBG00000020836) #23	ENSBBBG00000020839	ENSBBBG00000020856 #24	KAT7 (ENSBBBG00000021118) #25	FAM117A (ENSBBBG00000021150) #26	SLC35B1 (ENSBBBG00000021167) #27	SPOP (ENSBBBG00000021196) #28	NXPH3 (ENSBBBG00000021209) #29	NGFR (ENSBBBG00000021212) #30	PHB1 (ENSBBBG00000021247) #31	ZNF652 (ENSBBBG00000007191) #32	PHOSPHO1 (ENSBBBG00000005686) #33	ABI3 (ENSBBBG00000021279) #34	GNGT2 (ENSBBBG00000021294) #35	B4GALNT2 (ENSBBBG00000021305) #36
Siberian musk deer	MODERN SPECIES	1210	ACSF2 (ENSMMSG00000024435)	CHAD (ENSMMSG00000024437) #10	LRRC59 (ENSMMSG00000024438) #11	EME1 (ENSMMSG00000024439) #12	MRPL27 (ENSMMSG00000024440) #13	XYLT2 (ENSMMSG00000024441) #14	TMEM92 (ENSMMSG00000024442) #15	ENSMMSG00000024443	COL1A1 (ENSMMSG00000024445) #16	SGCA (ENSMMSG00000024448) #17	ENSMMSG00000024449	PPP1R9B (ENSMMSG00000024450) #18	SAMD14 (ENSMMSG00000024451) #19	PDK2 (ENSMMSG00000024453) #20	ITGA3 (ENSMMSG00000024456) #21	DLX3 (ENSMMSG00000024461) #22	DLX4 (ENSMMSG00000024462) #23	TAC4 (ENSMMSG00000024465) #24	KAT7 (ENSMMSG00000024468) #25	FAM117A (ENSMMSG00000024473) #26	SLC35B1 (ENSMMSG00000024476) #27	ENSMMSG00000024479 #28	NXPH3 (ENSMMSG00000024480) #29	NGFR (ENSMMSG00000024482) #30	ENSMMSG00000024484	PHB1 (ENSMMSG00000024486) #31	ZNF652 (ENSMMSG00000024488) #32	PHOSPHO1 (ENSMMSG00000024489) #33	ABI3 (ENSMMSG00000024491) #34	GNGT2 (ENSMMSG00000024493) #35	ENSMMSG00000024495
Yarkand deer	MODERN SPECIES	28	RSAD1 (ENSCHYG00000002873) #9	ACSF2 (ENSCHYG00000002936)	CHAD (ENSCHYG00000003066) #10	LRRC59 (ENSCHYG00000003075) #11	EME1 (ENSCHYG00000003086) #12	MRPL27 (ENSCHYG00000003106) #13	XYLT2 (ENSCHYG00000003132) #14	TMEM92 (ENSCHYG00000003173) #15	COL1A1 (ENSCHYG00000003243) #16	SGCA (ENSCHYG00000003594) #17	ENSCHYG00000003614	PPP1R9B (ENSCHYG00000003627) #18	SAMD14 (ENSCHYG00000003655) #19	PDK2 (ENSCHYG00000003696) #20	ITGA3 (ENSCHYG00000003740) #21	DLX3 (ENSCHYG00000003824) #22	DLX4 (ENSCHYG00000003831) #23	ENSCHYG00000003841	ENSCHYG00000003867 #24	KAT7 (ENSCHYG00000003926) #25	FAM117A (ENSCHYG00000004129) #26	SPOP (ENSCHYG00000004194) #28	NXPH3 (ENSCHYG00000004206) #29	NGFR (ENSCHYG00000004216) #30	PHB1 (ENSCHYG00000004248) #31	ZNF652 (ENSCHYG00000004272) #32	ENSCHYG00000004303 #33	ABI3 (ENSCHYG00000004324) #34	B4GALNT2 (ENSCHYG00000004351) #36	IGF2BP1 (ENSCHYG00000004387)	GIP (ENSCHYG00000004425)
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385.m #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Blue whale	MODERN SPECIES	12	RSAD1 (ENSBMSG00010022500) #9	ACSF2 (ENSBMSG00010022503)	CHAD (ENSBMSG00010022506) #10	LRRC59 (ENSBMSG00010022507) #11	EME1 (ENSBMSG00010022508) #12	MRPL27 (ENSBMSG00010022510) #13	XYLT2 (ENSBMSG00010022511) #14	TMEM92 (ENSBMSG00010014945) #15	COL1A1 (ENSBMSG00010014990) #16	SGCA (ENSBMSG00010015088) #17	ENSBMSG00010015139	PPP1R9B (ENSBMSG00010015173) #18	SAMD14 (ENSBMSG00010015203) #19	PDK2 (ENSBMSG00010015249) #20	ITGA3 (ENSBMSG00010015331) #21	DLX3 (ENSBMSG00010015657) #22	DLX4 (ENSBMSG00010015698) #23	TAC4 (ENSBMSG00010015794) #24	KAT7 (ENSBMSG00010016090) #25	FAM117A (ENSBMSG00010016280) #26	ENSBMSG00010016392 #27	SPOP (ENSBMSG00010016457) #28	ENSBMSG00010016496	NXPH3 (ENSBMSG00010016515) #29	NGFR (ENSBMSG00010016537) #30	PHB1 (ENSBMSG00010016580) #31	ZNF652 (ENSBMSG00010016625) #32	ENSBMSG00010016656 #33	ABI3 (ENSBMSG00010016693) #34	GNGT2 (ENSBMSG00010016723) #35	B4GALNT2 (ENSBMSG00010016748) #36
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385.m #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385.m #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385.m #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000154464.a #10	ENSGT00940000156830	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a	ENSGT00390000017385.m #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Beluga whale	MODERN SPECIES	26	RSAD1 (ENSDLEG00000005284) #9	CHAD (ENSDLEG00000005274) #10	ACSF2 (ENSDLEG00000005263)	ENSDLEG00000005261	LRRC59 (ENSDLEG00000005255) #11	EME1 (ENSDLEG00000005249) #12	ENSDLEG00000005241	XYLT2 (ENSDLEG00000005230) #14	TMEM92 (ENSDLEG00000005220) #15	ENSDLEG00000005129	SGCA (ENSDLEG00000005120) #17	PPP1R9B (ENSDLEG00000005110) #18	SAMD14 (ENSDLEG00000005099) #19	PDK2 (ENSDLEG00000005081) #20	ITGA3 (ENSDLEG00000005065) #21	DLX3 (ENSDLEG00000005062) #22	DLX4 (ENSDLEG00000005046) #23	KAT7 (ENSDLEG00000005028) #25	FAM117A (ENSDLEG00000005017) #26	SLC35B1 (ENSDLEG00000005010) #27	SPOP (ENSDLEG00000004995) #28	ENSDLEG00000004990	NXPH3 (ENSDLEG00000004987) #29	NGFR (ENSDLEG00000004981) #30	PHB (ENSDLEG00000004975) #31	ZNF652 (ENSDLEG00000004967) #32	PHOSPHO1 (ENSDLEG00000004963) #33	ABI3 (ENSDLEG00000004950) #34	GNGT2 (ENSDLEG00000004944) #35	B4GALNT2 (ENSDLEG00000004906) #36	IGF2BP1 (ENSDLEG00000004887)
Narwhal	MODERN SPECIES	316	CHAD (ENSMMNG00015022022) #10	ENSMMNG00015022023	ENSMMNG00015022024 #11	EME1 (ENSMMNG00015022025) #12	MRPL27 (ENSMMNG00015022026) #13	XYLT2 (ENSMMNG00015022027) #14	ENSMMNG00015022028	TMEM92 (ENSMMNG00015022029) #15	COL1A1 (ENSMMNG00015022030) #16	SGCA (ENSMMNG00015022031) #17	ENSMMNG00015022032	PPP1R9B (ENSMMNG00015022033) #18	SAMD14 (ENSMMNG00015022034) #19	PDK2 (ENSMMNG00015022035) #20	ITGA3 (ENSMMNG00015022036) #21	DLX3 (ENSMMNG00015022037) #22	DLX4 (ENSMMNG00015022038) #23	TAC4 (ENSMMNG00015022039) #24	KAT7 (ENSMMNG00015022040) #25	ENSMMNG00015022041 #26	SLC35B1 (ENSMMNG00015022042) #27	SPOP (ENSMMNG00015022043) #28	ENSMMNG00015022044	NXPH3 (ENSMMNG00015022045) #29	NGFR (ENSMMNG00015022046) #30	PHB1 (ENSMMNG00015022047) #31	ZNF652 (ENSMMNG00015022048) #32	ENSMMNG00015022049 #33	ABI3 (ENSMMNG00015022050) #34	GNGT2 (ENSMMNG00015022051) #35	B4GALNT2 (ENSMMNG00015022052) #36
Vaquita	MODERN SPECIES	12	RSAD1 (ENSPSNG00000022620) #9	ACSF2 (ENSPSNG00000022621)	CHAD (ENSPSNG00000022625) #10	LRRC59 (ENSPSNG00000013150) #11	EME1 (ENSPSNG00000013179) #12	MRPL27 (ENSPSNG00000013243) #13	XYLT2 (ENSPSNG00000013315) #14	TMEM92 (ENSPSNG00000013385) #15	COL1A1 (ENSPSNG00000013479) #16	SGCA (ENSPSNG00000013631) #17	ENSPSNG00000013967	PPP1R9B (ENSPSNG00000014049) #18	SAMD14 (ENSPSNG00000014101) #19	PDK2 (ENSPSNG00000014164) #20	ITGA3 (ENSPSNG00000014254) #21	DLX3 (ENSPSNG00000014423) #22	DLX4 (ENSPSNG00000014503) #23	ENSPSNG00000014556 #24	KAT7 (ENSPSNG00000014685) #25	ENSPSNG00000014915 #26	SLC35B1 (ENSPSNG00000014969) #27	SPOP (ENSPSNG00000015068) #28	ENSPSNG00000015121	NXPH3 (ENSPSNG00000015160) #29	NGFR (ENSPSNG00000015210) #30	PHB1 (ENSPSNG00000015363) #31	ZNF652 (ENSPSNG00000015435) #32	PHOSPHO1 (ENSPSNG00000015535) #33	ABI3 (ENSPSNG00000015585) #34	GNGT2 (ENSPSNG00000015777) #35	B4GALNT2 (ENSPSNG00000015839) #36
Sperm whale	MODERN SPECIES	5	ANKRD40CL (ENSPCTG00005016774)	LUC7L3 (ENSPCTG00005016897)	ANKRD40 (ENSPCTG00005016980)	ABCC3 (ENSPCTG00005017033)	CACNA1G (ENSPCTG00005018367)	SPATA20 (ENSPCTG00005022503)	ENSPCTG00005022511 #7	MYCBPAP (ENSPCTG00005022515) #8	RSAD1 (ENSPCTG00005022518) #9	ACSF2 (ENSPCTG00005022522)	ENSPCTG00005022524	LRRC59 (ENSPCTG00005022526) #11	EME1 (ENSPCTG00005022527) #12	MRPL27 (ENSPCTG00005022528) #13	XYLT2 (ENSPCTG00005022531) #14	DLX3 (ENSPCTG00005022534) #22	DLX4 (ENSPCTG00005022536) #23	TAC4 (ENSPCTG00005022538) #24	KAT7 (ENSPCTG00005022544) #25	FAM117A (ENSPCTG00005004179) #26	SLC35B1 (ENSPCTG00005004200) #27	SPOP (ENSPCTG00005004228) #28	NXPH3 (ENSPCTG00005004256) #29	NGFR (ENSPCTG00005004279) #30	ZNF652 (ENSPCTG00005004307) #32	B4GALNT2 (ENSPCTG00005004337) #36	IGF2BP1 (ENSPCTG00005004404)	GIP (ENSPCTG00005004443)	ENSPCTG00005004464	SNF8 (ENSPCTG00005004481)	ATP5MC1 (ENSPCTG00005004516)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Xenarthra	ANCESTRAL SPECIES	120		ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29
Sloth	MODERN SPECIES	4433																DLX3 (ENSCHOG00000002762) #22
Armadillo	MODERN SPECIES	281	RSAD1 (ENSDNOG00000014583) #9	ACSF2 (ENSDNOG00000018581)	CHAD (ENSDNOG00000018587) #10	LRRC59 (ENSDNOG00000044387) #11	EME1 (ENSDNOG00000043004) #12	MRPL27 (ENSDNOG00000023845) #13	XYLT2 (ENSDNOG00000044594) #14	TMEM92 (ENSDNOG00000043425) #15	ENSDNOG00000049386	COL1A1 (ENSDNOG00000018271) #16	SGCA (ENSDNOG00000049007) #17	ENSDNOG00000042871	SAMD14 (ENSDNOG00000000633) #19	PDK2 (ENSDNOG00000040768) #20	ITGA3 (ENSDNOG00000019283) #21	DLX3 (ENSDNOG00000019410) #22	DLX4 (ENSDNOG00000003720) #23	ENSDNOG00000031493	TAC4 (ENSDNOG00000005468) #24	KAT7 (ENSDNOG00000005454) #25	FAM117A (ENSDNOG00000009271) #26	SLC35B1 (ENSDNOG00000009256) #27	SPOP (ENSDNOG00000008247) #28	NXPH3 (ENSDNOG00000041598) #29
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00390000011216 #9	ENSGT00940000156830	ENSGT00940000154464.a #10	ENSGT00390000017385 #11	ENSGT00530000063937.a #12	ENSGT00390000014660 #13	ENSGT00940000158326 #14	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Hyrax	MODERN SPECIES	10525																DLX3 (ENSPCAG00000012751) #22	DLX4 (ENSPCAG00000012730) #23
Elephant	MODERN SPECIES	310	RSAD1 (ENSLAFG00000007022) #9	ACSF2 (ENSLAFG00000007011)	CHAD (ENSLAFG00000009516) #10	LRRC59 (ENSLAFG00000000458) #11	EME1 (ENSLAFG00000029329) #12	MRPL27 (ENSLAFG00000018289) #13	XYLT2 (ENSLAFG00000009189) #14	ENSLAFG00000027483 #15	COL1A1 (ENSLAFG00000003435) #16	SGCA (ENSLAFG00000022047) #17	ENSLAFG00000030707	PPP1R9B (ENSLAFG00000023325) #18	SAMD14 (ENSLAFG00000021674) #19	PDK2 (ENSLAFG00000031711) #20	ITGA3 (ENSLAFG00000002548) #21	DLX3 (ENSLAFG00000028511) #22	DLX4 (ENSLAFG00000013453) #23	TAC4 (ENSLAFG00000015318) #24	KAT7 (ENSLAFG00000002796) #25	FAM117A (ENSLAFG00000029848) #26	SLC35B1 (ENSLAFG00000002794) #27	SPOP (ENSLAFG00000003311) #28	NXPH3 (ENSLAFG00000003309) #29	NGFR (ENSLAFG00000003584) #30	PHB1 (ENSLAFG00000010087) #31	ZNF652 (ENSLAFG00000010084) #32	PHOSPHO1 (ENSLAFG00000031084) #33	ABI3 (ENSLAFG00000001493) #34	GNGT2 (ENSLAFG00000025568) #35	B4GALNT2 (ENSLAFG00000010563) #36	IGF2BP1 (ENSLAFG00000002048)
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00730000111487	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #15	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Common wonbat	MODERN SPECIES	1037	TMUB2 (ENSVURG00010008334)	ASB16 (ENSVURG00010008324)	HROB (ENSVURG00010008307)	HDAC5 (ENSVURG00010008262)	G6PC3 (ENSVURG00010008245)	LSM12 (ENSVURG00010008238)	TMEM101 (ENSVURG00010008234)	NAGS (ENSVURG00010008226)	MPP2 (ENSVURG00010008156)	COL1A1 (ENSVURG00010008141) #16	SGCA (ENSVURG00010008123) #17	PPP1R9B (ENSVURG00010008112) #18	SAMD14 (ENSVURG00010008102) #19	PDK2 (ENSVURG00010008089) #20	ITGA3 (ENSVURG00010008033) #21	DLX3 (ENSVURG00010008014) #22	DLX4 (ENSVURG00010008009) #23	ENSVURG00010007979	KAT7 (ENSVURG00010007939) #25	FAM117A (ENSVURG00010007908) #26	SLC35B1 (ENSVURG00010007896) #27	SPOP (ENSVURG00010007867) #28	NXPH3 (ENSVURG00010007859) #29	NGFR (ENSVURG00010007851) #30	PHB1 (ENSVURG00010007822) #31	ZNF652 (ENSVURG00010007816) #32	PHOSPHO1 (ENSVURG00010007795) #33	ABI3 (ENSVURG00010007788) #34	GNGT2 (ENSVURG00010007781) #35	B4GALNT2 (ENSVURG00010007761) #36	IGF2BP1 (ENSVURG00010007702)
koala	MODERN SPECIES	67	G6PC3 (ENSPCIG00000020242)	LSM12 (ENSPCIG00000020244)	TMEM101 (ENSPCIG00000020245)	NAGS (ENSPCIG00000020247)	ENSPCIG00000020248	ENSPCIG00000031169	ENSPCIG00000002999	MPP2 (ENSPCIG00000020252)	ENSPCIG00000020256 #15	COL1A1 (ENSPCIG00000029160) #16	SGCA (ENSPCIG00000029161) #17	PPP1R9B (ENSPCIG00000029162) #18	SAMD14 (ENSPCIG00000029163) #19	PDK2 (ENSPCIG00000029164) #20	ITGA3 (ENSPCIG00000029165) #21	DLX3 (ENSPCIG00000029166) #22	DLX4 (ENSPCIG00000029167) #23	KAT7 (ENSPCIG00000013089) #25	FAM117A (ENSPCIG00000013096) #26	SLC35B1 (ENSPCIG00000013098) #27	SPOP (ENSPCIG00000013101) #28	ENSPCIG00000013102	NXPH3 (ENSPCIG00000013103) #29	NGFR (ENSPCIG00000014398) #30	PHB1 (ENSPCIG00000013104) #31	ZNF652 (ENSPCIG00000013105) #32	ENSPCIG00000013106	PHOSPHO1 (ENSPCIG00000013107) #33	ABI3 (ENSPCIG00000013108) #34	GNGT2 (ENSPCIG00000013109) #35	B4GALNT2 (ENSPCIG00000003606) #36
Wallaby	MODERN SPECIES	6024																DLX3 (ENSMEUG00000004205) #22
Tasmanian devil	MODERN SPECIES	3	G6PC3 (ENSSHAG00000015015)	ENSSHAG00000022394	NAGS (ENSSHAG00000014836)	ENSSHAG00000030220	ENSSHAG00000025840	ENSSHAG00000021813	ENSSHAG00000026253	ENSSHAG00000014013 #15	COL1A1 (ENSSHAG00000013444) #16	SGCA (ENSSHAG00000013308) #17	ENSSHAG00000026226	SAMD14 (ENSSHAG00000021640) #19	PPP1R9B (ENSSHAG00000029473) #18	PDK2 (ENSSHAG00000012889) #20	ITGA3 (ENSSHAG00000012691) #21	DLX3 (ENSSHAG00000012177) #22	DLX4 (ENSSHAG00000011988) #23	KAT7 (ENSSHAG00000010137) #25	FAM117A (ENSSHAG00000009386) #26	SLC35B1 (ENSSHAG00000028015) #27	SPOP (ENSSHAG00000021587) #28	NXPH3 (ENSSHAG00000007677) #29	NGFR (ENSSHAG00000006168) #30	PHB1 (ENSSHAG00000025219) #31	PHOSPHO1 (ENSSHAG00000020969) #33	ABI3 (ENSSHAG00000023845) #34	ENSSHAG00000014937 #36	ENSSHAG00000014639 #36	IGF2BP1 (ENSSHAG00000014259)	ENSSHAG00000014119	SNF8 (ENSSHAG00000013985)
Opossum	MODERN SPECIES	1	G6PC3 (ENSMODG00000011804)	LSM12 (ENSMODG00000011809)	TMEM101 (ENSMODG00000043632)	NAGS (ENSMODG00000011832)	ENSMODG00000011848	MPP2 (ENSMODG00000011864)	ENSMODG00000011871 #15	COL1A1 (ENSMODG00000011945) #16	ENSMODG00000043992	SGCA (ENSMODG00000011969) #17	ENSMODG00000037352	PPP1R9B (ENSMODG00000012010) #18	SAMD14 (ENSMODG00000024070) #19	PDK2 (ENSMODG00000012026) #20	ITGA3 (ENSMODG00000012090) #21	DLX3 (ENSMODG00000012098) #22	DLX4 (ENSMODG00000012104) #23	ENSMODG00000013640	KAT7 (ENSMODG00000012142) #25	SLC35B1 (ENSMODG00000012166) #26	SPOP (ENSMODG00000046008) #28	NXPH3 (ENSMODG00000037958) #29	NGFR (ENSMODG00000012200) #30	PHB1 (ENSMODG00000012210) #31	ZNF652 (ENSMODG00000012215) #32	PHOSPHO1 (ENSMODG00000012217) #33	ABI3 (ENSMODG00000012233) #34	GNGT2 (ENSMODG00000048984) #35	B4GALNT2 (ENSMODG00000012242) #36	ENSMODG00000047325	IGF2BP1 (ENSMODG00000012268)
Platypus	MODERN SPECIES	2	ENSOANG00000040577	HDAC5 (ENSOANG00000044276)	ENSOANG00000039130	ENSOANG00000037512	LSM12 (ENSOANG00000046842)	TMEM101 (ENSOANG00000043785)	ENSOANG00000020867	MPP2 (ENSOANG00000045593)	ENSOANG00000040238	COL1A1 (ENSOANG00000001736) #16	SGCA (ENSOANG00000009519) #17	PPP1R9B (ENSOANG00000009521) #18	SAMD14 (ENSOANG00000013429) #19	PDK2 (ENSOANG00000039603) #20	ITGA3 (ENSOANG00000000624) #21	DLX3 (ENSOANG00000041076) #22	ENSOANG00000036467 #23	KAT7 (ENSOANG00000044742) #25	FAM117A (ENSOANG00000051323) #26	ENSOANG00000038252 #27	SPOP (ENSOANG00000050936) #28	ENSOANG00000043058 #29	NGFR (ENSOANG00000000447) #30	PHB1 (ENSOANG00000003080) #31	ZNF652 (ENSOANG00000039038) #32	PHOSPHO1 (ENSOANG00000042855) #33	ABI3 (ENSOANG00000050932) #34	GNGT2 (ENSOANG00000037597) #35	B4GALNT2 (ENSOANG00000042946) #36	IGF2BP1 (ENSOANG00000014859)	SNF8 (ENSOANG00000050758)
Sauria	ANCESTRAL SPECIES	26	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Argentine black and white tegu	MODERN SPECIES	32	ETV4 (ENSSMRG00000021778)	TMEM101 (ENSSMRG00000021779)	ENSSMRG00000021780	ENSSMRG00000021781	ENSSMRG00000021782	ENSSMRG00000021783	MPP2 (ENSSMRG00000021784)	COL1A1 (ENSSMRG00000021785) #16	SGCA (ENSSMRG00000021786) #17	ENSSMRG00000021787	PPP1R9B (ENSSMRG00000021788) #18	SAMD14 (ENSSMRG00000021789) #19	PDK2 (ENSSMRG00000021790) #20	ITGA3 (ENSSMRG00000021791) #21	ENSSMRG00000021792	DLX3 (ENSSMRG00000021793) #22	ENSSMRG00000021794	KAT7 (ENSSMRG00000021795) #25	FAM117A (ENSSMRG00000021796) #26	SLC35B1 (ENSSMRG00000021798) #27	SPOP (ENSSMRG00000021800) #28	NXPH3 (ENSSMRG00000021801) #29	NGFR (ENSSMRG00000021802) #30	ENSSMRG00000021803	PHB1 (ENSSMRG00000021805) #31	ZNF652 (ENSSMRG00000021807) #32	PHOSPHO1 (ENSSMRG00000021809) #33	ABI3 (ENSSMRG00000021810) #34	GNGT2 (ENSSMRG00000021812) #35	B4GALNT2 (ENSSMRG00000021814) #36	IGF2BP1 (ENSSMRG00000021826)
Common wall lizard	MODERN SPECIES	4	MEOX1 (ENSPMRG00000012481)	ETV4 (ENSPMRG00000012491)	TMEM101 (ENSPMRG00000012512)	ENSPMRG00000012534	ENSPMRG00000012538	ENSPMRG00000012541	MPP2 (ENSPMRG00000012561)	COL1A1 (ENSPMRG00000012631) #16	ENSPMRG00000012651 #17	ENSPMRG00000012660	ENSPMRG00000012662	PPP1R9B (ENSPMRG00000012665) #18	SAMD14 (ENSPMRG00000012670) #19	PDK2 (ENSPMRG00000012681) #20	ITGA3 (ENSPMRG00000012742) #21	DLX3 (ENSPMRG00000012973) #22	ENSPMRG00000012978	ENSPMRG00000012987	KAT7 (ENSPMRG00000013003) #25	FAM117A (ENSPMRG00000013011) #26	SLC35B1 (ENSPMRG00000013020) #27	SPOP (ENSPMRG00000013026) #28	NXPH3 (ENSPMRG00000013030) #29	NGFR (ENSPMRG00000013033) #30	ENSPMRG00000013039 #31	ZNF652 (ENSPMRG00000013044) #32	PHOSPHO1 (ENSPMRG00000013052) #33	ABI3 (ENSPMRG00000013058) #34	GNGT2 (ENSPMRG00000013069) #35	ENSPMRG00000013076 #36	IGF2BP1 (ENSPMRG00000013095)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744.i #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416.q #32	ENSGT00390000007741.a #33	ENSGT00940000161380.d.a #34	ENSGT00940000161380.c #34	ENSGT00940000161380.d.b #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Elapidae_a	ANCESTRAL SPECIES	62	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000113862	ENSGT00940000158833.e.a #18	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22
Acanthophiinae	ANCESTRAL SPECIES	59	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00730000113862	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22
Mainland tiger snake	MODERN SPECIES	29	DUSP3 (ENSNSUG00000006858)	SOST (ENSNSUG00000006859)	MEOX1 (ENSNSUG00000006860)	ETV4 (ENSNSUG00000006861)	TMEM101 (ENSNSUG00000006883)	ENSNSUG00000006884	MPP2 (ENSNSUG00000006889)	COL1A1 (ENSNSUG00000006962) #16	SGCA (ENSNSUG00000006963) #17	ENSNSUG00000006964	ENSNSUG00000006965 #18	ENSNSUG00000006966 #18	SAMD14 (ENSNSUG00000006967) #19	PDK2 (ENSNSUG00000006968) #20	ITGA3 (ENSNSUG00000007042) #21	DLX3 (ENSNSUG00000007074) #22	ENSNSUG00000007075	KAT7 (ENSNSUG00000007077) #25	FAM117A (ENSNSUG00000007391) #26	SLC35B1 (ENSNSUG00000007396) #27	SPOP (ENSNSUG00000007398) #28	NXPH3 (ENSNSUG00000007399) #29	NGFR (ENSNSUG00000007403) #30	ENSNSUG00000007404 #31	ZNF652 (ENSNSUG00000007405) #32	PHOSPHO1 (ENSNSUG00000007407) #33	ABI3 (ENSNSUG00000007411) #34	GNGT2 (ENSNSUG00000007414) #35	IGF2BP1 (ENSNSUG00000007416)	ENSNSUG00000007425	SNF8 (ENSNSUG00000007427)
Eastern brown snake	MODERN SPECIES	49	DUSP3 (ENSPTXG00000013829)	SOST (ENSPTXG00000013830)	MEOX1 (ENSPTXG00000013831)	ETV4 (ENSPTXG00000013833)	TMEM101 (ENSPTXG00000013835)	ENSPTXG00000013836	MPP2 (ENSPTXG00000013837)	COL1A1 (ENSPTXG00000013838) #16	SGCA (ENSPTXG00000013840) #17	ENSPTXG00000013841	PPP1R9B (ENSPTXG00000013842) #18	SAMD14 (ENSPTXG00000013843) #19	PDK2 (ENSPTXG00000013844) #20	ITGA3 (ENSPTXG00000013850) #21	ENSPTXG00000013852	DLX3 (ENSPTXG00000013853) #22	ENSPTXG00000013854	ENSPTXG00000013855 #25	FAM117A (ENSPTXG00000013856) #26	SLC35B1 (ENSPTXG00000013857) #27	SPOP (ENSPTXG00000013861) #28	NXPH3 (ENSPTXG00000013865) #29	NGFR (ENSPTXG00000013867) #30	ENSPTXG00000013869 #31	ZNF652 (ENSPTXG00000013871) #32	PHOSPHO1 (ENSPTXG00000013872) #33	ABI3 (ENSPTXG00000013874) #34	ENSPTXG00000013875	IGF2BP1 (ENSPTXG00000013878)	SNF8 (ENSPTXG00000013881)	UBE2Z (ENSPTXG00000013882)
Blue-lipped sea krait	MODERN SPECIES	3166																DLX3 (ENSLLTG00000005305) #22	ENSLLTG00000005313
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	337	DUSP3 (ENSNNAG00000004188)	SOST (ENSNNAG00000004179)	MEOX1 (ENSNNAG00000004166)	ETV4 (ENSNNAG00000004108)	TMEM101 (ENSNNAG00000004085)	ENSNNAG00000004067	MPP2 (ENSNNAG00000004031)	COL1A1 (ENSNNAG00000003840) #16	ENSNNAG00000003815	SGCA (ENSNNAG00000003757) #17	ENSNNAG00000003735 #18	SAMD14 (ENSNNAG00000003694) #19	PDK2 (ENSNNAG00000003652) #20	ITGA3 (ENSNNAG00000003538) #21	ENSNNAG00000010645	ENSNNAG00000010612 #22	ENSNNAG00000010565	ENSNNAG00000010094 #25	FAM117A (ENSNNAG00000010029) #26	SLC35B1 (ENSNNAG00000009983) #27	SPOP (ENSNNAG00000009952) #28	NXPH3 (ENSNNAG00000009934) #29	NGFR (ENSNNAG00000009911) #30	ENSNNAG00000009883 #31	ENSNNAG00000009859 #32	PHOSPHO1 (ENSNNAG00000009831) #33	ENSNNAG00000009817 #34	ENSNNAG00000009796 #34	GNGT2 (ENSNNAG00000009770) #35	B4GALNT2 (ENSNNAG00000009682) #36	IGF2BP1 (ENSNNAG00000009591)
Indian cobra	MODERN SPECIES	33															ENSNNAG00000010758 #32	ENSNNAG00000010792 #22	ENSNNAG00000010834
Lizard	MODERN SPECIES	5	ENSACAG00000004967	ENSACAG00000035782	MPP2 (ENSACAG00000004972)	ENSACAG00000022717	ENSACAG00000005026	COL1A1 (ENSACAG00000005084) #16	ENSACAG00000039670	ENSACAG00000024181	SGCA (ENSACAG00000023160) #17	PPP1R9B (ENSACAG00000005320) #18	ENSACAG00000044410 #19	ENSACAG00000024778 #19	PDK2 (ENSACAG00000005384) #20	ENSACAG00000005508 #21	ENSACAG00000045206	DLX3 (ENSACAG00000039737) #22	ENSACAG00000040935	KAT7 (ENSACAG00000005025) #25	FAM117A (ENSACAG00000004992) #26	SLC35B1 (ENSACAG00000004966) #27	SPOP (ENSACAG00000004879) #28	NXPH3 (ENSACAG00000040242) #29	NGFR (ENSACAG00000004836) #30	ENSACAG00000004797 #31	ZNF652 (ENSACAG00000006063) #32	PHOSPHO1 (ENSACAG00000006108) #33	ENSACAG00000006110 #34	GNGT2 (ENSACAG00000041539) #35	ENSACAG00000041178	ENSACAG00000034571	ENSACAG00000006165 #36
tuatara	MODERN SPECIES	1841											ENSSPUG00000015257 #17	PPP1R9B (ENSSPUG00000015244) #18	SAMD14 (ENSSPUG00000015172) #19	PDK2 (ENSSPUG00000015124) #20	ITGA3 (ENSSPUG00000015081) #21	DLX3 (ENSSPUG00000015063) #22	ENSSPUG00000015003	KAT7 (ENSSPUG00000014920) #25	FAM117A (ENSSPUG00000014901) #26	SPOP (ENSSPUG00000014851) #28
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Archosauria	ANCESTRAL SPECIES	20	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Aves	ANCESTRAL SPECIES	26	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae	ANCESTRAL SPECIES	23	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Golden eagle	MODERN SPECIES	24	ASB16 (ENSACCG00020012606)	HROB (ENSACCG00020012573)	HDAC5 (ENSACCG00020012220)	G6PC3 (ENSACCG00020011848)	LSM12 (ENSACCG00020011812)	TMEM101 (ENSACCG00020011792)	PYY (ENSACCG00020011766)	ENSACCG00020011728	MPP2 (ENSACCG00020011698)	ENSACCG00020011586	SGCA (ENSACCG00020011502) #17	PPP1R9B (ENSACCG00020011480) #18	SAMD14 (ENSACCG00020011440) #19	PDK2 (ENSACCG00020011423) #20	ITGA3 (ENSACCG00020006218) #21	DLX3 (ENSACCG00020006186) #22	ENSACCG00020006173	KAT7 (ENSACCG00020006157) #25	FAM117A (ENSACCG00020006125) #26	SLC35B1 (ENSACCG00020006114) #27	SPOP (ENSACCG00020006096) #28	NXPH3 (ENSACCG00020006088) #29	NGFR (ENSACCG00020006079) #30	PHB1 (ENSACCG00020006063) #31	ZNF652 (ENSACCG00020006049) #32	PHOSPHO1 (ENSACCG00020006039) #33	ABI3 (ENSACCG00020006027) #34	GNGT2 (ENSACCG00020006019) #35	IGF2BP1 (ENSACCG00020006001)	GIP (ENSACCG00020005975)	SNF8 (ENSACCG00020005957)
Kakapo	MODERN SPECIES	12	TBX21 (ENSSHBG00005009578)	OSBPL7 (ENSSHBG00005009643)	MRPL10 (ENSSHBG00005009737)	ENSSHBG00005009744	SCRN2 (ENSSHBG00005009758)	SP6 (ENSSHBG00005009774)	SP2 (ENSSHBG00005009786)	PNPO (ENSSHBG00005009805)	PRR15L (ENSSHBG00005009820)	CDK5RAP3 (ENSSHBG00005009863)	ENSSHBG00005009936	ENSSHBG00005009950	ENSSHBG00005009969	ENSSHBG00005009990	ENSSHBG00005010020	DLX3 (ENSSHBG00005010048) #22	ENSSHBG00005010082	ENSSHBG00005010109	FTSJ3 (ENSSHBG00005010153)	PSMC5 (ENSSHBG00005010198)	SMARCD2 (ENSSHBG00005010280)	ASIC2 (ENSSHBG00005010612)	ENSSHBG00005010657	CRHR1 (ENSSHBG00005010679)	ITGB3 (ENSSHBG00005010742)	ENSSHBG00005010805	ENSSHBG00005010839	TLK2 (ENSSHBG00005010903)	MRC2 (ENSSHBG00005011279)	TANC2 (ENSSHBG00005011840)	CYB561 (ENSSHBG00005011939)
Passeriformes	ANCESTRAL SPECIES	41	ENSGT00940000158253	ENSGT00390000014069.b	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000163054.a.b	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000154957.A	ENSGT00940000160427
Great tit	MODERN SPECIES	271															ITGA3 (ENSPMJG00000007216) #21	DLX3 (ENSPMJG00000007210) #22	ENSPMJG00000007206	ENSPMJG00000006826	SLC35B1 (ENSPMJG00000006824) #27	SPOP (ENSPMJG00000006814) #28	NXPH3 (ENSPMJG00000006810) #29	NGFR (ENSPMJG00000006807) #30	PHB1 (ENSPMJG00000006803) #31	ZNF652 (ENSPMJG00000006802) #32	PHOSPHO1 (ENSPMJG00000006801) #33	ENSPMJG00000006798 #34	ENSPMJG00000006796	ENSPMJG00000006794	ENSPMJG00000006790	HOXB13 (ENSPMJG00000006787)
Passeriformes_d	ANCESTRAL SPECIES	37	ENSGT00940000157423	ENSGT00940000161141	ENSGT00940000158253	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000154957.A	ENSGT00940000160427	ENSGT00940000154298.a.b	ENSGT00940000159091	ENSGT00390000007843.bb.a
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000157423	ENSGT00940000161141	ENSGT00940000158253	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000160427
Medium ground finch	MODERN SPECIES	383													PPP1R9B (ENSGFOG00000013700) #18	PDK2 (ENSGFOG00000013702) #20	ITGA3 (ENSGFOG00000013706) #21	DLX3 (ENSGFOG00000013711) #22	KAT7 (ENSGFOG00000013720) #25	SLC35B1 (ENSGFOG00000013728) #27	SPOP (ENSGFOG00000013729) ##28	NGFR (ENSGFOG00000013735) #30
Flycatcher	MODERN SPECIES	19	ENSFALG00000004736	ENSFALG00000004713	ENSFALG00000004686	DDX42 (ENSFALG00000004675)	CCDC47 (ENSFALG00000004656)	ENSFALG00000004633	STRADA (ENSFALG00000004644)	MAP3K3 (ENSFALG00000004608)	DCAF7 (ENSFALG00000004584)	KCNH6 (ENSFALG00000004555)	ENSFALG00000004540	CYB561 (ENSFALG00000004533)	TANC2 (ENSFALG00000004525)	PDK2 (ENSFALG00000023655) #20	ITGA3 (ENSFALG00000027559) #21	DLX3 (ENSFALG00000005185) #22	ENSFALG00000027591	KAT7 (ENSFALG00000005202) #25	SLC35B1 (ENSFALG00000007148) #27	SPOP (ENSFALG00000007146) ##28	NGFR (ENSFALG00000006987) #30	ENSFALG00000026685	ENSFALG00000028717	ENSFALG00000025180	PHB1 (ENSFALG00000006992) #31	ZNF652 (ENSFALG00000007003) #32	PHOSPHO1 (ENSFALG00000014803) #33	ENSFALG00000011344	ENSFALG00000025055 #34	ENSFALG00000011366	ENSFALG00000025620
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000157423	ENSGT00940000161141.e	ENSGT00940000158253	ENSGT00940000160773	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Anatidae	ANCESTRAL SPECIES	43								ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT00960000189470.a	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Pink-footed goose	MODERN SPECIES	200							ENSABRG00000013438	ENSABRG00000013416	ENSABRG00000013413	COL1A1 (ENSABRG00000013387) #16	SGCA (ENSABRG00000013372) #17	PPP1R9B (ENSABRG00000013357) #18	SAMD14 (ENSABRG00000013352) #19	ENSABRG00000013344	ITGA3 (ENSABRG00000013311) #21	DLX3 (ENSABRG00000013302) #22	ENSABRG00000013294	KAT7 (ENSABRG00000013283) #25	FAM117A (ENSABRG00000013279) #26	SLC35B1 (ENSABRG00000013277) #27	SPOP (ENSABRG00000013269) #28	NXPH3 (ENSABRG00000013267) #29	NGFR (ENSABRG00000013265) #30	ENSABRG00000013255	MPP3 (ENSABRG00000013251)	CFAP97D1 (ENSABRG00000013238)	ENSABRG00000013233	DUSP3 (ENSABRG00000013228)	SOST (ENSABRG00000013223)	MEOX1 (ENSABRG00000013215)	ETV4 (ENSABRG00000013199)
Duck	MODERN SPECIES	1570																DLX3 (ENSAPLG00000017667) #22
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000161141.f.a	ENSGT00940000158253	ENSGT00940000160773	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT01070000257226	ENSGT00950000185319	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000169006	ENSGT00940000154628.C	ENSGT00940000157325.`b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b
Japanese quail	MODERN SPECIES	19	ATXN7L3 (ENSCJPG00005019309)	ASB16 (ENSCJPG00005019310)	G6PC3 (ENSCJPG00005019312)	LSM12 (ENSCJPG00005019313)	TMEM101 (ENSCJPG00005019314)	ENSCJPG00005019315	ENSCJPG00005019316	ENSCJPG00005019317	ENSCJPG00005019318	ENSCJPG00005019319	SGCA (ENSCJPG00005019320) #17	PPP1R9B (ENSCJPG00005019321) #18	SAMD14 (ENSCJPG00005019322) #19	PDK2 (ENSCJPG00005019323) #20	ITGA3 (ENSCJPG00005019324) #21	DLX3 (ENSCJPG00005019325) #22	ENSCJPG00005019327	KAT7 (ENSCJPG00005019328) #25	FAM117A (ENSCJPG00005019329) #26	SLC35B1 (ENSCJPG00005019330) #27	SPOP (ENSCJPG00005019331) #28	NXPH3 (ENSCJPG00005019333) #29	NGFR (ENSCJPG00005019335) #30	ENSCJPG00005019336	MPP3 (ENSCJPG00005019337)	CFAP97D1 (ENSCJPG00005019338)	ENSCJPG00005019339	ENSCJPG00005019340	SOST (ENSCJPG00005019341)	MEOX1 (ENSCJPG00005019342)	ETV4 (ENSCJPG00005019343)
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000158922	ENSGT00940000157423	ENSGT00940000161141.f.a	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT01070000257226	ENSGT00950000185319	ENSGT00940000163871.d	ENSGT00940000156584 #16	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Turkey	MODERN SPECIES	817																ENSMGAG00000019822 #22
Chicken	MODERN SPECIES	19	UBTF (ENSGALG00010024910)	ENSGALG00010024923	G6PC3 (ENSGALG00010024934)	LSM12 (ENSGALG00010024961)	TMEM101 (ENSGALG00010024968)	ENSGALG00010024972	PPY (ENSGALG00010024981)	ENSGALG00010025006	COL1A1 (ENSGALG00010025092) #16	ENSGALG00010026410	SGCA (ENSGALG00010025247) #17	PPP1R9B (ENSGALG00010025252) #18	SAMD14 (ENSGALG00010025263) #19	PDK2 (ENSGALG00010025274) #20	ITGA3 (ENSGALG00010025286) #21	DLX3 (ENSGALG00010026116) #22	Dlx4 (ENSGALG00010021149)	KAT7 (ENSGALG00010024189) #25	FAM117A (ENSGALG00010026827) #26	SLC35B1 (ENSGALG00010024199) #27	SPOP (ENSGALG00010024203) #28	NXPH3 (ENSGALG00010024210) #29	NGFR (ENSGALG00010024218) #30	ENSGALG00010024223	MPP3 (ENSGALG00010024243)	C27H17ORF105 (ENSGALG00010024255)	RAB18L (ENSGALG00010024270)	DUSP3 (ENSGALG00010024280)	SOST (ENSGALG00010024290)	MEOX1 (ENSGALG00010024300)	ETV4 (ENSGALG00010024333)
Australian saltwater crocodile	MODERN SPECIES	60	CCDC47 (ENSCPRG00005008240)	DDX42 (ENSCPRG00005008233)	ENSCPRG00005008199	ENSCPRG00005008193	CDC27 (ENSCPRG00005008177)	KANSL1 (ENSCPRG00005008121)	MAPT (ENSCPRG00005008071)	ENSCPRG00005008032	RUNDC3A (ENSCPRG00005008019)	ENSCPRG00005008015	SGCA (ENSCPRG00005008006) #17	PPP1R9B (ENSCPRG00005007993) #18	SAMD14 (ENSCPRG00005007960) #19	PDK2 (ENSCPRG00005007935) #20	ITGA3 (ENSCPRG00005007894) #21	DLX3 (ENSCPRG00005007874) #22	ENSCPRG00005007871	KAT7 (ENSCPRG00005007477) #25	FAM117A (ENSCPRG00005007435) #26	SLC35B1 (ENSCPRG00005007405) #27	SPOP (ENSCPRG00005007390) #28	NXPH3 (ENSCPRG00005007387) #29	NGFR (ENSCPRG00005007361) #30	PHB1 (ENSCPRG00005007358) #31	ZNF652 (ENSCPRG00005007345) #32	PHOSPHO1 (ENSCPRG00005007340) #33	GNGT2 (ENSCPRG00005007334) #35	ABI3 (ENSCPRG00005007322) #34	IGF2BP1 (ENSCPRG00005007311)	GIP (ENSCPRG00005007298)	SNF8 (ENSCPRG00005007296)
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Chinese turtle	MODERN SPECIES	873													PDK2 (ENSPSIG00000003745) #20	ENSPSIG00000001779	ITGA3 (ENSPSIG00000003793) #21	DLX3 (ENSPSIG00000003843) #22	ENSPSIG00000003893	KAT7 (ENSPSIG00000003897) #25	FAM117A (ENSPSIG00000004190) #26	SLC35B1 (ENSPSIG00000004219) #27	SPOP (ENSPSIG00000004309) #28	NXPH3 (ENSPSIG00000001781) #29	NGFR (ENSPSIG00000004515) #30	PHB1 (ENSPSIG00000004526) #31	ZNF652 (ENSPSIG00000004682) #32	PHOSPHO1 (ENSPSIG00000004701) #33	ABI3 (ENSPSIG00000004779) #34	GNGT2 (ENSPSIG00000004780) #35	B4GALNT2 (ENSPSIG00000004798) #36	IGF2BP1 (ENSPSIG00000005175)	ENSPSIG00000005451
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.i #36	ENSGT00390000006679.b.j #36	ENSGT00940000160427
Abingdon island giant tortoise	MODERN SPECIES	1609	TMEM101 (ENSCABG00000004634)	NAGS (ENSCABG00000004628)	ENSCABG00000004625	ENSCABG00000004623	MPP2 (ENSCABG00000004616)	ENSCABG00000004336	COL1A1 (ENSCABG00000004322) #16	ENSCABG00000004321	ENSCABG00000004319	SGCA (ENSCABG00000003975) #17	PPP1R9B (ENSCABG00000003949) #18	SAMD14 (ENSCABG00000003847) #19	PDK2 (ENSCABG00000003835) #20	ENSCABG00000003830	ITGA3 (ENSCABG00000003805) #21	DLX3 (ENSCABG00000003791) #22	ENSCABG00000003787	KAT7 (ENSCABG00000003186) #25	FAM117A (ENSCABG00000003167) #26	SLC35B1 (ENSCABG00000003156) #27	SPOP (ENSCABG00000003146) #28	NXPH3 (ENSCABG00000003144) #29	NGFR (ENSCABG00000003086) #30	PHB1 (ENSCABG00000003081) #31	ZNF652 (ENSCABG00000003079) #32	PHOSPHO1 (ENSCABG00000003074) #33	ENSCABG00000003068 #34	GNGT2 (ENSCABG00000003055) #35	ENSCABG00000002867 #36	ENSCABG00000002782 #36	IGF2BP1 (ENSCABG00000002771)
Goode s thornscrub tortoise	MODERN SPECIES	15	HDAC5 (ENSGEVG00005014411)	G6PC3 (ENSGEVG00005014208)	LSM12 (ENSGEVG00005014182)	ENSGEVG00005014090	TMEM101 (ENSGEVG00005014051)	NAGS (ENSGEVG00005013917)	PYY (ENSGEVG00005013834)	ENSGEVG00005013767	MPP2 (ENSGEVG00005013554)	ENSGEVG00005012852	SGCA (ENSGEVG00005012770) #17	PPP1R9B (ENSGEVG00005012736) #18	SAMD14 (ENSGEVG00005012502) #19	PDK2 (ENSGEVG00005012455) #20	ITGA3 (ENSGEVG00005012388) #21	DLX3 (ENSGEVG00005012297) #22	ENSGEVG00005012254	KAT7 (ENSGEVG00005012214) #25	FAM117A (ENSGEVG00005012132) #26	SLC35B1 (ENSGEVG00005012102) #27	SPOP (ENSGEVG00005012058) #28	NXPH3 (ENSGEVG00005012026) #29	NGFR (ENSGEVG00005011998) #30	ENSGEVG00005011943	PHB1 (ENSGEVG00005011915) #31	ZNF652 (ENSGEVG00005018438) #32	PHOSPHO1 (ENSGEVG00005018428) #33	GNGT2 (ENSGEVG00005018400) #35	ABI3 (ENSGEVG00005018348) #34	ENSGEVG00005018310 #36	ENSGEVG00005018261 #36
Emydidae	ANCESTRAL SPECIES	26	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #16	ENSGT00730000113862	ENSGT00390000005672.a.a #17	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01100000264939	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121
Three-toed box turtle	MODERN SPECIES	91	G6PC3 (ENSTMTG00000010425)	LSM12 (ENSTMTG00000010413)	ENSTMTG00000010384	PYY (ENSTMTG00000010361)	MPP2 (ENSTMTG00000010299)	ENSTMTG00000010275	COL1A1 (ENSTMTG00000008995) #16	ENSTMTG00000008884	ENSTMTG00000008848	SGCA (ENSTMTG00000008474) #17	PPP1R9B (ENSTMTG00000008419) #18	ENSTMTG00000008404	SAMD14 (ENSTMTG00000008275) #19	PDK2 (ENSTMTG00000008243) #20	ITGA3 (ENSTMTG00000008194) #21	DLX3 (ENSTMTG00000008162) #22	ENSTMTG00000008151	KAT7 (ENSTMTG00000008127) #25	FAM117A (ENSTMTG00000008108) #26	SLC35B1 (ENSTMTG00000008088) #27	SPOP (ENSTMTG00000008058) #28	NXPH3 (ENSTMTG00000008050) #29	NGFR (ENSTMTG00000008039) #30	ENSTMTG00000008034	PHB1 (ENSTMTG00000008017) #31	ZNF652 (ENSTMTG00000008012) #32	PHOSPHO1 (ENSTMTG00000008002) #33	ABI3 (ENSTMTG00000007978) #34	GNGT2 (ENSTMTG00000007963) #35	IGF2BP1 (ENSTMTG00000007859)	GIP (ENSTMTG00000007840)
painted turtle	MODERN SPECIES	2394	TMEM101 (ENSCPBG00000027107)	NAGS (ENSCPBG00000027108)	PYY (ENSCPBG00000027110)	ENSCPBG00000027111	MPP2 (ENSCPBG00000027112)	ENSCPBG00000027114	COL1A1 (ENSCPBG00000027141) #16	ENSCPBG00000027233	SGCA (ENSCPBG00000027236) #17	ENSCPBG00000027239	PPP1R9B (ENSCPBG00000027241) #18	ENSCPBG00000027244	SAMD14 (ENSCPBG00000027249) #19	PDK2 (ENSCPBG00000027259) #20	ITGA3 (ENSCPBG00000027263) #21	DLX3 (ENSCPBG00000027266) #22	ENSCPBG00000027268	KAT7 (ENSCPBG00000027273) #25	FAM117A (ENSCPBG00000027279) #26	SLC35B1 (ENSCPBG00000027281) #27	SPOP (ENSCPBG00000027284) #28	NXPH3 (ENSCPBG00000027288) #29	NGFR (ENSCPBG00000027292) #30	ENSCPBG00000027294	PHB1 (ENSCPBG00000027296) #31	ZNF652 (ENSCPBG00000027302) #32	PHOSPHO1 (ENSCPBG00000027305) #33	ABI3 (ENSCPBG00000027308) #34	GNGT2 (ENSCPBG00000027311) #35	IGF2BP1 (ENSCPBG00000027315)	GIP (ENSCPBG00000027322)
Anura	ANCESTRAL SPECIES	506															ENSGT00940000157746 #21	ENSGT00940000158951 #22
Leishan spiny toad	MODERN SPECIES	3	HROB (ENSLLEG00000026936)	HDAC5 (ENSLLEG00000027006)	ENSLLEG00000027143	G6PC3 (ENSLLEG00000027161)	LSM12 (ENSLLEG00000027205)	ENSLLEG00000027304	ENSLLEG00000027472 #17	COL1A1 (ENSLLEG00000017276) #16	ENSLLEG00000017909	MPP2 (ENSLLEG00000018006)	ENSLLEG00000018195	ENSLLEG00000018325	NAGS (ENSLLEG00000018403)	TMEM101 (ENSLLEG00000018483)	ITGA3 (ENSLLEG00000018562) #21	DLX3 (ENSLLEG00000019199) #22	ENSLLEG00000019235	ENSLLEG00000019262	ENSLLEG00000019273	KAT7 (ENSLLEG00000019312) #25	SLC35B1 (ENSLLEG00000020066) #27	SPOP (ENSLLEG00000020342) #28	NXPH3 (ENSLLEG00000020801) #29	NGFR (ENSLLEG00000020843) #30	ENSLLEG00000020907	ENSLLEG00000020974	PHB1 (ENSLLEG00000020990) #31	ZNF652 (ENSLLEG00000021148) #32	TMEM98 (ENSLLEG00000021348)	ZNF281 (ENSLLEG00000021456)	ENSLLEG00000021561
Frog	MODERN SPECIES	1	mettl2b (ENSXETG00000007856)	tlk2 (ENSXETG00000007854)	XB996620 [provisional:c1orf198] (ENSXETG00000007853)	tfb1m (ENSXETG00000007852)	crtap (ENSXETG00000007851)	slc13a3 (ENSXETG00000007850)	slc25a39 (ENSXETG00000011613)	grn (ENSXETG00000011614)	fam171a2 (ENSXETG00000011615)	ENSXETG00000049140	itga2b.1 (ENSXETG00000032329)	gpatch8 (ENSXETG00000008843)	fzd2 (ENSXETG00000008840)	MEIOC (ENSXETG00000008838)	itga3 (ENSXETG00000021920) #21	dlx3 (ENSXETG00000021919) #22	dlx4 (ENSXETG00000039707)	ENSXETG00000042209	kat7 (ENSXETG00000021908) #25	slc35b1 (ENSXETG00000015126) #27	spop (ENSXETG00000027799) #28	nxph3 (ENSXETG00000018631) #29	ngfr (ENSXETG00000046328) #30	phb (ENSXETG00000027802) #31	ZNF652 (ENSXETG00000044174) #32	ENSXETG00000042234	phospho1 (ENSXETG00000033588) #33	abi3 (ENSXETG00000031476)	gngt2 (ENSXETG00000033724) #35	b4galnt2 (ENSXETG00000033376) #36	ENSXETG00000031036