Gnathostomata	ANCESTRAL SPECIES	38												ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT00940000154991	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000167603	ENSGT00940000157423	ENSGT00940000157900 #27	ENSGT00940000154268	ENSGT00940000154376 #28	ENSGT00950000182883.a.a #29
Euteleostomi	ANCESTRAL SPECIES	47	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00940000159914	ENSGT00940000168169	ENSGT01020000230346.F	ENSGT00940000158654	ENSGT00940000154991.b	ENSGT00940000154991.a.b	ENSGT00400000022305	ENSGT00940000160773	ENSGT00390000014069.b	ENSGT00940000158253	ENSGT00940000167603	ENSGT00940000157423	ENSGT00940000158922
Sarcopterygii	ANCESTRAL SPECIES	86	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30
Tetrapoda	ANCESTRAL SPECIES	46	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00390000006679.b #36	ENSGT01100000263525.b.a #35
Amniota	ANCESTRAL SPECIES	14	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Mammalia	ANCESTRAL SPECIES	12	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Theria	ANCESTRAL SPECIES	9	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Eutheria	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Primates	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.k #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Mouse lemur	MODERN SPECIES	7	RSAD1 (ENSMICG00000033136) #7	ACSF2 (ENSMICG00000009718) #8	CHAD (ENSMICG00000027984) #9	LRRC59 (ENSMICG00000030215) #10	EME1 (ENSMICG00000009705) #11	MRPL27 (ENSMICG00000009698) #12	XYLT2 (ENSMICG00000009687) #13	TMEM92 (ENSMICG00000007273) #14	COL1A1 (ENSMICG00000007252) #15	SGCA (ENSMICG00000007247) #16	ENSMICG00000038279 #17	PPP1R9B (ENSMICG00000027692) #18	SAMD14 (ENSMICG00000007228) #19	PDK2 (ENSMICG00000007219) #20	ITGA3 (ENSMICG00000007204) #21	DLX3 (ENSMICG00000037127) #22	DLX4 (ENSMICG00000031694) #23	TAC4 (ENSMICG00000016489) #24	KAT7 (ENSMICG00000016478) #25	FAM117A (ENSMICG00000031031) #26	SLC35B1 (ENSMICG00000016462) #27	SPOP (ENSMICG00000006987) #28	NXPH3 (ENSMICG00000006985) #29	NGFR (ENSMICG00000037395) #30	ENSMICG00000043778 #31	ZNF652 (ENSMICG00000006959) #32	PHOSPHO1 (ENSMICG00000032861) #33	ABI3 (ENSMICG00000008618) #34	GNGT2 (ENSMICG00000045728) #35	B4GALNT2 (ENSMICG00000008596) #36	ENSMICG00000037104 #37
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.k #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Greater bamboo lemur	MODERN SPECIES	1079				LRRC59 (ENSPSMG00000023941) #10	EME1 (ENSPSMG00000023952) #11	ENSPSMG00000023960 #12	XYLT2 (ENSPSMG00000023995) #13	TMEM92 (ENSPSMG00000024016) #14	COL1A1 (ENSPSMG00000024033) #15	SGCA (ENSPSMG00000024047) #16	ENSPSMG00000024052	PPP1R9B (ENSPSMG00000024059) #18	SAMD14 (ENSPSMG00000024063) #19	PDK2 (ENSPSMG00000024072) #20	ITGA3 (ENSPSMG00000024125) #21	DLX3 (ENSPSMG00000024150) #22	DLX4 (ENSPSMG00000024154) #23	TAC4 (ENSPSMG00000024159) #24	KAT7 (ENSPSMG00000024267) #25	FAM117A (ENSPSMG00000024310) #26	SLC35B1 (ENSPSMG00000024325) #27	SPOP (ENSPSMG00000024349) #28	NXPH3 (ENSPSMG00000024356) #29	NGFR (ENSPSMG00000024367) #30	PHB1 (ENSPSMG00000024377) #31	ZNF652 (ENSPSMG00000024391) #32	PHOSPHO1 (ENSPSMG00000024394) #33	ABI3 (ENSPSMG00000024397) #34	GNGT2 (ENSPSMG00000024402) #35	B4GALNT2 (ENSPSMG00000024407) #36
Coquerels sifaka	MODERN SPECIES	120	MYCBPAP (ENSPCOG00000028417)	RSAD1 (ENSPCOG00000019679) #7	CHAD (ENSPCOG00000023064) #9	ACSF2 (ENSPCOG00000021413) #8	LRRC59 (ENSPCOG00000019835) #10	EME1 (ENSPCOG00000021528) #11	MRPL27 (ENSPCOG00000014496) #12	XYLT2 (ENSPCOG00000022051) #13	TMEM92 (ENSPCOG00000016701) #14	COL1A1 (ENSPCOG00000022260) #15	SGCA (ENSPCOG00000018516) #16	PPP1R9B (ENSPCOG00000022313) #18	SAMD14 (ENSPCOG00000022625) #19	PDK2 (ENSPCOG00000024290) #20	ITGA3 (ENSPCOG00000024145) #21	DLX3 (ENSPCOG00000027168) #22	DLX4 (ENSPCOG00000027773) #23	TAC4 (ENSPCOG00000003764) #24	KAT7 (ENSPCOG00000022157) #25	FAM117A (ENSPCOG00000024870) #26	SLC35B1 (ENSPCOG00000022007) #27	SPOP (ENSPCOG00000015101) #28	NXPH3 (ENSPCOG00000013916) #29	NGFR (ENSPCOG00000018887) #30	ENSPCOG00000004228 #31	ZNF652 (ENSPCOG00000026434) #32	PHOSPHO1 (ENSPCOG00000025336) #33	ABI3 (ENSPCOG00000022568) #34	GNGT2 (ENSPCOG00000012867) #35	B4GALNT2 (ENSPCOG00000013984) #36	ENSPCOG00000018672
Bushbaby	MODERN SPECIES	133	RSAD1 (ENSOGAG00000005398) #7	CHAD (ENSOGAG00000029025) #9	ACSF2 (ENSOGAG00000005393) #8	LRRC59 (ENSOGAG00000000949) #10	ENSOGAG00000005389 #11	ENSOGAG00000005385 #12	XYLT2 (ENSOGAG00000034388) #13	TMEM92 (ENSOGAG00000031374) #14	COL1A1 (ENSOGAG00000024598) #15	ENSOGAG00000027712	SGCA (ENSOGAG00000033076) #16	PPP1R9B (ENSOGAG00000007812) #18	SAMD14 (ENSOGAG00000025589) #19	PDK2 (ENSOGAG00000005143) #20	ITGA3 (ENSOGAG00000005138) #21	DLX3 (ENSOGAG00000005136) #22	DLX4 (ENSOGAG00000005134) #23	TAC4 (ENSOGAG00000001052) #24	KAT7 (ENSOGAG00000001049) #25	FAM117A (ENSOGAG00000001048) #26	SLC35B1 (ENSOGAG00000001047) #27	SPOP (ENSOGAG00000012793) #28	NXPH3 (ENSOGAG00000012792) #29	NGFR (ENSOGAG00000015270) #30	ENSOGAG00000027015 #31	ZNF652 (ENSOGAG00000003574) #32	PHOSPHO1 (ENSOGAG00000034530) #33	ABI3 (ENSOGAG00000029723) #34	B4GALNT2 (ENSOGAG00000003570) #36	IGF2BP1 (ENSOGAG00000001270)	GIP (ENSOGAG00000010130)
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Hominoidea	ANCESTRAL SPECIES	13	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Hominidae	ANCESTRAL SPECIES	16	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Pan	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00940000161510	ENSGT00940000162032	ENSGT00940000156796	ENSGT00730000111282	ENSGT00940000159217	ENSGT00940000158370	ENSGT00390000014827.n	ENSGT00410000026943
Bonobo	MODERN SPECIES	8	MYCBPAP (ENSPPAG00000020130)	RSAD1 (ENSPPAG00000038908) #7	CHAD (ENSPPAG00000042480) #9	ACSF2 (ENSPPAG00000041679) #8	LRRC59 (ENSPPAG00000038146) #10	EME1 (ENSPPAG00000043143) #11	MRPL27 (ENSPPAG00000037578) #12	XYLT2 (ENSPPAG00000040742) #13	TMEM92 (ENSPPAG00000030755) #14	COL1A1 (ENSPPAG00000001294) #15	SGCA (ENSPPAG00000043792) #16	PPP1R9B (ENSPPAG00000034102) #18	SAMD14 (ENSPPAG00000029871) #19	PDK2 (ENSPPAG00000027588) #20	ITGA3 (ENSPPAG00000033847) #21	DLX3 (ENSPPAG00000003644) #22	DLX4 (ENSPPAG00000041902) #23	TAC4 (ENSPPAG00000028441) #24	KAT7 (ENSPPAG00000041097) #25	FAM117A (ENSPPAG00000032931) #26	SLC35B1 (ENSPPAG00000037729) #27	SPOP (ENSPPAG00000025621) #28	ENSPPAG00000031130 #29	ALOX15B (ENSPPAG00000040178)	ALOX12B (ENSPPAG00000013603)	ALOXE3 (ENSPPAG00000031012)	ENSPPAG00000033618	PER1 (ENSPPAG00000040729)	VAMP2 (ENSPPAG00000022280)	TMEM107 (ENSPPAG00000042069)	ENSPPAG00000007117
Chimpanzee	MODERN SPECIES	8	RSAD1 (ENSPTRG00000009401) #7	CHAD (ENSPTRG00000009400) #9	ACSF2 (ENSPTRG00000009399) #8	LRRC59 (ENSPTRG00000009398) #10	EME1 (ENSPTRG00000009397) #11	MRPL27 (ENSPTRG00000009396) #12	XYLT2 (ENSPTRG00000009395) #13	TMEM92 (ENSPTRG00000042996) #14	COL1A1 (ENSPTRG00000009393) #15	H1-9 (ENSPTRG00000046816)	SGCA (ENSPTRG00000009391) #16	PPP1R9B (ENSPTRG00000043428) #18	SAMD14 (ENSPTRG00000009389) #19	PDK2 (ENSPTRG00000009388) #20	ITGA3 (ENSPTRG00000009387) #21	DLX3 (ENSPTRG00000009386) #22	DLX4 (ENSPTRG00000009385) #23	TAC4 (ENSPTRG00000009384) #24	KAT7 (ENSPTRG00000009383) #25	FAM117A (ENSPTRG00000009382) #26	SLC35B1 (ENSPTRG00000009381) #27	SPOP (ENSPTRG00000009380) #28	ENSPTRG00000050792 #29	ALOX15B (ENSPTRG00000008721)	ALOX12B (ENSPTRG00000008723)	ALOXE3 (ENSPTRG00000008724)	HES7 (ENSPTRG00000008725)	PER1 (ENSPTRG00000008726)	VAMP2 (ENSPTRG00000008727)	TMEM107 (ENSPTRG00000008728)	ENSPTRG00000047944
Human	MODERN SPECIES	8	MYCBPAP (ENSG00000136449)	RSAD1 (ENSG00000136444) #7	CHAD (ENSG00000136457) #9	ACSF2 (ENSG00000167107) #8	LRRC59 (ENSG00000108829) #10	EME1 (ENSG00000154920) #11	MRPL27 (ENSG00000108826) #12	XYLT2 (ENSG00000015532) #13	TMEM92 (ENSG00000167105) #14	COL1A1 (ENSG00000108821) #15	SGCA (ENSG00000108823) #16	PPP1R9B (ENSG00000108819) #18	SAMD14 (ENSG00000167100) #19	PDK2 (ENSG00000005882) #20	ITGA3 (ENSG00000005884) #21	DLX3 (ENSG00000064195) #22	DLX4 (ENSG00000108813) #23	TAC4 (ENSG00000176358) #24	KAT7 (ENSG00000136504) #25	FAM117A (ENSG00000121104) #26	SLC35B1 (ENSG00000121073) #27	SPOP (ENSG00000121067) #28	NXPH3 (ENSG00000182575) #29	NGFR (ENSG00000064300) #30	PHB1 (ENSG00000167085) #31	ZNF652 (ENSG00000198740) #32	PHOSPHO1 (ENSG00000173868) #33	ABI3 (ENSG00000108798) #34	GNGT2 (ENSG00000167083) #35	B4GALNT2 (ENSG00000167080) #36	IGF2BP1 (ENSG00000159217)
Gorilla	MODERN SPECIES	18	CHAD (ENSGGOG00000006518) #9	LRRC59 (ENSGGOG00000006310) #10	EME1 (ENSGGOG00000011302) #11	MRPL27 (ENSGGOG00000011954) #12	XYLT2 (ENSGGOG00000011942) #13	TMEM92 (ENSGGOG00000025886) #14	ENSGGOG00000041481	ENSGGOG00000039430	COL1A1 (ENSGGOG00000013208) #15	SGCA (ENSGGOG00000013199) #16	ENSGGOG00000013204	PPP1R9B (ENSGGOG00000042350) #18	SAMD14 (ENSGGOG00000015586) #19	PDK2 (ENSGGOG00000015583) #20	ITGA3 (ENSGGOG00000013558) #21	DLX3 (ENSGGOG00000014997) #22	DLX4 (ENSGGOG00000014992) #23	ENSGGOG00000042625	TAC4 (ENSGGOG00000007479) #24	KAT7 (ENSGGOG00000007469) #25	FAM117A (ENSGGOG00000004783) #26	SLC35B1 (ENSGGOG00000004776) #27	ENSGGOG00000009295 #28	ENSGGOG00000036288 #29	NGFR (ENSGGOG00000008434) #30	ENSGGOG00000037188	PHB (ENSGGOG00000028002) #31	ZNF652 (ENSGGOG00000010288) #32	PHOSPHO1 (ENSGGOG00000001957) #33	ABI3 (ENSGGOG00000001954) #34	ENSGGOG00000001953 #35
Orangutan	MODERN SPECIES	8	EPN3 (ENSPPYG00000008279)	MYCBPAP (ENSPPYG00000008280)	RSAD1 (ENSPPYG00000008281) #7	ACSF2 (ENSPPYG00000008282) #8	CHAD (ENSPPYG00000008283) #9	ENSPPYG00000034021 #10	EME1 (ENSPPYG00000008285) #11	XYLT2 (ENSPPYG00000008287) #13	TMEM92 (ENSPPYG00000008938) #14	COL1A1 (ENSPPYG00000008937) #15	SGCA (ENSPPYG00000008935) #16	PPP1R9B (ENSPPYG00000008934) #18	SAMD14 (ENSPPYG00000008933) #19	PDK2 (ENSPPYG00000008932) #20	ITGA3 (ENSPPYG00000008931) #21	DLX3 (ENSPPYG00000008930) #22	DLX4 (ENSPPYG00000008929) #23	TAC4 (ENSPPYG00000008926) #24	KAT7 (ENSPPYG00000008925) #25	ENSPPYG00000008924 #26	SPOP (ENSPPYG00000008923) #28	ENSPPYG00000034149 #29	NGFR (ENSPPYG00000008921) #30	ENSPPYG00000008920 #31	ZNF652 (ENSPPYG00000008919) #32	PHOSPHO1 (ENSPPYG00000008917) #33	ABI3 (ENSPPYG00000008916) #34	ENSPPYG00000008915 #35	B4GALNT2 (ENSPPYG00000008914) #36	IGF2BP1 (ENSPPYG00000008913)	GIP (ENSPPYG00000008912)
Gibbon	MODERN SPECIES	105															ENSNLEG00000030078	DLX3 (ENSNLEG00000003294) #22	ENSNLEG00000003291 #23	ENSNLEG00000003272 #24	KAT7 (ENSNLEG00000003201) #25	FAM117A (ENSNLEG00000003198) #26	SLC35B1 (ENSNLEG00000003163) #27	SPOP (ENSNLEG00000003088) #28	ENSNLEG00000003086 #29	ENSNLEG00000003078 #30	ENSNLEG00000031597	PHB1 (ENSNLEG00000002978) #31	ZNF652 (ENSNLEG00000027071) #32	ENSNLEG00000018816 #33	ABI3 (ENSNLEG00000002938) #34	ENSNLEG00000002931 #35	B4GALNT2 (ENSNLEG00000002844) #36
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Rhinopithecus	ANCESTRAL SPECIES	19	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000006238.n	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Black snub-nosed monkey	MODERN SPECIES	1661	RSAD1 (ENSRBIG00000044435) #7	ACSF2 (ENSRBIG00000039108) #8	CHAD (ENSRBIG00000044280) #9	LRRC59 (ENSRBIG00000033634) #10	EME1 (ENSRBIG00000033427) #11	MRPL27 (ENSRBIG00000033398) #12	XYLT2 (ENSRBIG00000044739) #13	TMEM92 (ENSRBIG00000032676) #14	COL1A1 (ENSRBIG00000039556) #15	SGCA (ENSRBIG00000024658) #16	ENSRBIG00000035550	PPP1R9B (ENSRBIG00000000643) #18	SAMD14 (ENSRBIG00000040751) #19	PDK2 (ENSRBIG00000029967) #20	ITGA3 (ENSRBIG00000031472) #21	DLX3 (ENSRBIG00000037611) #22	DLX4 (ENSRBIG00000042692) #23	ENSRBIG00000013434	ENSRBIG00000040783	ENSRBIG00000005357	KAT7 (ENSRBIG00000031559) #25	ENSRBIG00000011981	FAM117A (ENSRBIG00000031638) #26	SLC35B1 (ENSRBIG00000034096) #27	SPOP (ENSRBIG00000035729) #28	NXPH3 (ENSRBIG00000043134) #29	NGFR (ENSRBIG00000044844) #30	ENSRBIG00000044848 #31	ZNF652 (ENSRBIG00000044859) #32	PHOSPHO1 (ENSRBIG00000041603) #33	ABI3 (ENSRBIG00000020770) #34
Golden snub-nosed monkey	MODERN SPECIES	2563	RSAD1 (ENSRROG00000028670) #7	CHAD (ENSRROG00000038428) #9	ACSF2 (ENSRROG00000037852) #8	LRRC59 (ENSRROG00000031009) #10	EME1 (ENSRROG00000045622) #11	MRPL27 (ENSRROG00000030847) #12	XYLT2 (ENSRROG00000045441) #13	TMEM92 (ENSRROG00000039943) #14	COL1A1 (ENSRROG00000044544) #15	ENSRROG00000032771	SGCA (ENSRROG00000037245) #16	ENSRROG00000043195 #18	SAMD14 (ENSRROG00000042278) #19	PDK2 (ENSRROG00000036455) #20	ITGA3 (ENSRROG00000044196) #21	DLX3 (ENSRROG00000010213) #22	DLX4 (ENSRROG00000041446) #23
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Vervet Monkey	MODERN SPECIES	7	MYCBPAP (ENSCSAG00000005444)	RSAD1 (ENSCSAG00000005429) #7	ACSF2 (ENSCSAG00000005420) #8	CHAD (ENSCSAG00000005414) #9	LRRC59 (ENSCSAG00000005412) #10	EME1 (ENSCSAG00000005404) #11	MRPL27 (ENSCSAG00000005396) #12	XYLT2 (ENSCSAG00000005387) #13	TMEM92 (ENSCSAG00000005357) #14	COL1A1 (ENSCSAG00000005310) #15	SGCA (ENSCSAG00000005231) #16	PPP1R9B (ENSCSAG00000005228) #18	SAMD14 (ENSCSAG00000005224) #19	PDK2 (ENSCSAG00000005211) #20	ITGA3 (ENSCSAG00000005208) #21	DLX3 (ENSCSAG00000005198) #22	DLX4 (ENSCSAG00000005195) #23	TAC4 (ENSCSAG00000005188) #24	KAT7 (ENSCSAG00000005187) #25	TMC8 (ENSCSAG00000005185)	TMC6 (ENSCSAG00000005174)	TNRC6C (ENSCSAG00000005167)	SEPTIN9 (ENSCSAG00000005146)	SEC14L1 (ENSCSAG00000005133)	ENSCSAG00000000541	MGAT5B (ENSCSAG00000005125)	MFSD11 (ENSCSAG00000005118)	SRSF2 (ENSCSAG00000005108)	METTL23 (ENSCSAG00000005104)	JMJD6 (ENSCSAG00000005101)	MXRA7 (ENSCSAG00000005097)
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.g.b.b.b ##31	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00390000002732.n.t	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.o #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00910000147886	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Crab-eating macaque	MODERN SPECIES	7	MYCBPAP (ENSMFAG00000045294)	ENSMFAG00000024046	RSAD1 (ENSMFAG00000035805) #7	ACSF2 (ENSMFAG00000042230) #8	CHAD (ENSMFAG00000031869) #9	EME1 (ENSMFAG00000040987) #11	ENSMFAG00000031691 #12	XYLT2 (ENSMFAG00000043415) #13	TMEM92 (ENSMFAG00000040318) #14	COL1A1 (ENSMFAG00000033990) #15	SGCA (ENSMFAG00000029765) #16	PPP1R9B (ENSMFAG00000041494) #18	SAMD14 (ENSMFAG00000045601) #19	PDK2 (ENSMFAG00000042437) #20	ITGA3 (ENSMFAG00000043382) #21	DLX3 (ENSMFAG00000032276) #22	DLX4 (ENSMFAG00000013144) #23	ENSMFAG00000044227	ENSMFAG00000049058	ENSMFAG00000051274	KAT7 (ENSMFAG00000036338) #25	ENSMFAG00000061536	FAM117A (ENSMFAG00000039391) #26	SLC35B1 (ENSMFAG00000025107) #27	SPOP (ENSMFAG00000000752) #28	NXPH3 (ENSMFAG00000041457) #29	NGFR (ENSMFAG00000044019) #30	ENSMFAG00000051302	PHB1 (ENSMFAG00000042554) #31	ZNF652 (ENSMFAG00000039085) #32	PHOSPHO1 (ENSMFAG00000041672) #33
Rhesus	MODERN SPECIES	7	MYCBPAP (ENSMMUG00000017242)	RSAD1 (ENSMMUG00000017240) #7	ACSF2 (ENSMMUG00000017236) #8	CHAD (ENSMMUG00000053287) #9	LRRC59 (ENSMMUG00000017234) #10	EME1 (ENSMMUG00000017233) #11	ENSMMUG00000017231 #12	TMEM92 (ENSMMUG00000056787) #14	COL1A1 (ENSMMUG00000001467) #15	ENSMMUG00000051568	SGCA (ENSMMUG00000001466) #16	PPP1R9B (ENSMMUG00000020061) #18	SAMD14 (ENSMMUG00000014687) #19	PDK2 (ENSMMUG00000014685) #20	ITGA3 (ENSMMUG00000000153) #21	DLX3 (ENSMMUG00000000157) #22	DLX4 (ENSMMUG00000017658) #23	ENSMMUG00000049512	ENSMMUG00000050934	KAT7 (ENSMMUG00000047550) #25	SLC35B1 (ENSMMUG00000008870) #26	SPOP (ENSMMUG00000018752) #28	NXPH3 (ENSMMUG00000003383) #29	ENSMMUG00000064469	NGFR (ENSMMUG00000014603) #30	ENSMMUG00000065166	PHB1 (ENSMMUG00000000156) #31	ZNF652 (ENSMMUG00000003453) #32	PHOSPHO1 (ENSMMUG00000002436) #33	ABI3 (ENSMMUG00000002437) #34	B4GALNT2 (ENSMMUG00000015845) #36
Pig-tailed macaque	MODERN SPECIES	494	RSAD1 (ENSMNEG00000031537) #7	CHAD (ENSMNEG00000042174) #9	ACSF2 (ENSMNEG00000042990) #8	LRRC59 (ENSMNEG00000024016) #10	EME1 (ENSMNEG00000036149) #11	MRPL27 (ENSMNEG00000020495) #12	XYLT2 (ENSMNEG00000038586) #13	TMEM92 (ENSMNEG00000041470) #14	COL1A1 (ENSMNEG00000038612) #15	ENSMNEG00000024961	SGCA (ENSMNEG00000040835) #16	PPP1R9B (ENSMNEG00000033285) #18	SAMD14 (ENSMNEG00000043590) #19	PDK2 (ENSMNEG00000042768) #20	ITGA3 (ENSMNEG00000029777) #21	DLX3 (ENSMNEG00000031310) #22	DLX4 (ENSMNEG00000035926) #23	ENSMNEG00000029555	KAT7 (ENSMNEG00000044419) #25	ENSMNEG00000044360 #26	SLC35B1 (ENSMNEG00000042757) #27	SPOP (ENSMNEG00000044368) #28	NXPH3 (ENSMNEG00000038163) #29	NGFR (ENSMNEG00000043507) #30	ENSMNEG00000026686	ENSMNEG00000030128 #31	ZNF652 (ENSMNEG00000037260) #32	PHOSPHO1 (ENSMNEG00000028521) #33	ABI3 (ENSMNEG00000036355) #34	GNGT2 (ENSMNEG00000029921) #35	B4GALNT2 (ENSMNEG00000044329) #36
Cercopithecinae_b	ANCESTRAL SPECIES	20	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Olive baboon	MODERN SPECIES	8	ENSPANG00000050914	RSAD1 (ENSPANG00000022474) #7	ACSF2 (ENSPANG00000022496) #8	CHAD (ENSPANG00000048455) #9	LRRC59 (ENSPANG00000022494) #10	EME1 (ENSPANG00000022493) #11	MRPL27 (ENSPANG00000022492) #12	XYLT2 (ENSPANG00000022500) #13	ENSPANG00000037162	COL1A1 (ENSPANG00000022601) #15	SGCA (ENSPANG00000022636) #16	PPP1R9B (ENSPANG00000049495) #18	SAMD14 (ENSPANG00000022624) #19	PDK2 (ENSPANG00000022651) #20	ENSPANG00000046741 #21	DLX3 (ENSPANG00000041730) #22	DLX4 (ENSPANG00000022817) #23	KAT7 (ENSPANG00000022824) #25	ENSPANG00000022823 #26	SLC35B1 (ENSPANG00000022822) #27	SPOP (ENSPANG00000022821) #28	NXPH3 (ENSPANG00000022820) #29	NGFR (ENSPANG00000022819) #30	PHB1 (ENSPANG00000022828) #31	ZNF652 (ENSPANG00000022829) #32	PHOSPHO1 (ENSPANG00000018531) #33	ABI3 (ENSPANG00000042285) #34	GNGT2 (ENSPANG00000022835) #35	B4GALNT2 (ENSPANG00000022834) #36	ENSPANG00000038197	ENSPANG00000049141
Cercopithecinae_d	ANCESTRAL SPECIES	7	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000153525.g.b.b.a.b.a.b.b	ENSGT01090000261853	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.i #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.u #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.k #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Drill	MODERN SPECIES	1297	ENSMLEG00000031115	RSAD1 (ENSMLEG00000037409) #7	ACSF2 (ENSMLEG00000001658) #8	CHAD (ENSMLEG00000034621) #9	LRRC59 (ENSMLEG00000041723) #10	EME1 (ENSMLEG00000010071) #11	MRPL27 (ENSMLEG00000038438) #12	XYLT2 (ENSMLEG00000034405) #13	TMEM92 (ENSMLEG00000005643) #14	COL1A1 (ENSMLEG00000034469) #15	SGCA (ENSMLEG00000028724) #16	ENSMLEG00000039748 #18	SAMD14 (ENSMLEG00000042974) #19	PDK2 (ENSMLEG00000041794) #20	ITGA3 (ENSMLEG00000030402) #21	DLX3 (ENSMLEG00000026314) #22	DLX4 (ENSMLEG00000029820) #23	ENSMLEG00000037371	ENSMLEG00000031342	KAT7 (ENSMLEG00000043692) #25	ENSMLEG00000001352 #26	SLC35B1 (ENSMLEG00000028555) #27	SPOP (ENSMLEG00000043280) #28	NXPH3 (ENSMLEG00000043510) #29	NGFR (ENSMLEG00000009406) #30	ENSMLEG00000043194 ##31	ZNF652 (ENSMLEG00000034995) #32	PHOSPHO1 (ENSMLEG00000039410) #33	ABI3 (ENSMLEG00000030652) #34	GNGT2 (ENSMLEG00000036852) #35	B4GALNT2 (ENSMLEG00000020666) #36
Sooty mangabey	MODERN SPECIES	564	RSAD1 (ENSCATG00000042705) #7	ACSF2 (ENSCATG00000035014) #8	CHAD (ENSCATG00000038156) #9	LRRC59 (ENSCATG00000015912) #10	EME1 (ENSCATG00000000384) #11	MRPL27 (ENSCATG00000028901) #12	XYLT2 (ENSCATG00000038951) #13	TMEM92 (ENSCATG00000044818) #14	COL1A1 (ENSCATG00000026514) #15	SGCA (ENSCATG00000004963) #16	ENSCATG00000044884	PPP1R9B (ENSCATG00000037746) #18	SAMD14 (ENSCATG00000031573) #19	PDK2 (ENSCATG00000032247) #20	ITGA3 (ENSCATG00000022073) #21	DLX3 (ENSCATG00000044310) #22	DLX4 (ENSCATG00000036886) #23	ENSCATG00000000745	ENSCATG00000035460	KAT7 (ENSCATG00000030056) #25	ENSCATG00000042140 #26	SLC35B1 (ENSCATG00000036462) #27	SPOP (ENSCATG00000028294) #28	NXPH3 (ENSCATG00000030177) #29	NGFR (ENSCATG00000030822) #30	ENSCATG00000044390 #31	ZNF652 (ENSCATG00000039244) #32	PHOSPHO1 (ENSCATG00000040780) #33	ABI3 (ENSCATG00000044608) #34	GNGT2 (ENSCATG00000040371) #35	B4GALNT2 (ENSCATG00000041984) #36
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00390000011666.x.a	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.q #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000011666.x.a	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.q #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Marmoset	MODERN SPECIES	17	EPN3 (ENSCJAG00000018535)	MYCBPAP (ENSCJAG00000018762)	RSAD1 (ENSCJAG00000018782) #7	CHAD (ENSCJAG00000018813) #9	ENSCJAG00000045929 #10	EME1 (ENSCJAG00000018843) #11	ENSCJAG00000018851 #12	XYLT2 (ENSCJAG00000018858) #13	ENSCJAG00000073201 #14	COL1A1 (ENSCJAG00000003818) #15	SGCA (ENSCJAG00000003794) #16	PPP1R9B (ENSCJAG00000006847) #18	SAMD14 (ENSCJAG00000006872) #19	PDK2 (ENSCJAG00000006896) #20	ITGA3 (ENSCJAG00000006922) #21	DLX3 (ENSCJAG00000006990) #22	DLX4 (ENSCJAG00000054881) #23	TAC4 (ENSCJAG00000007010) #24	KAT7 (ENSCJAG00000007037) #25	FAM117A (ENSCJAG00000007066) #26	SLC35B1 (ENSCJAG00000007077) #27	SPOP (ENSCJAG00000045260) #28	NXPH3 (ENSCJAG00000047530) #29	NGFR (ENSCJAG00000048552) #30	PHB1 (ENSCJAG00000007174) #31	ZNF652 (ENSCJAG00000007206) #32	PHOSPHO1 (ENSCJAG00000047817) #33	ABI3 (ENSCJAG00000007219) #34	GNGT2 (ENSCJAG00000041153) #35	B4GALNT2 (ENSCJAG00000007247) #36	ENSCJAG00000079002
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00390000011666.x.a	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660.q #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000153272.a.b.p.b	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.e #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.m #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Bolivian squirrel monkey	MODERN SPECIES	86	CHAD (ENSSBOG00000027701) #9	ACSF2 (ENSSBOG00000031032) #8	LRRC59 (ENSSBOG00000014866) #10	EME1 (ENSSBOG00000026480) #11	ENSSBOG00000016577 #12	XYLT2 (ENSSBOG00000033568) #13	TMEM92 (ENSSBOG00000030516) #14	ENSSBOG00000031765	COL1A1 (ENSSBOG00000005091) #15	ENSSBOG00000032392	SGCA (ENSSBOG00000035857) #16	PPP1R9B (ENSSBOG00000016072) #18	SAMD14 (ENSSBOG00000035764) #19	PDK2 (ENSSBOG00000020937) #20	ITGA3 (ENSSBOG00000019078) #21	DLX3 (ENSSBOG00000033912) #22	DLX4 (ENSSBOG00000025750) #23	TAC4 (ENSSBOG00000006746) #24	KAT7 (ENSSBOG00000031238) #25	FAM117A (ENSSBOG00000034596) #26	SLC35B1 (ENSSBOG00000032295) #27	SPOP (ENSSBOG00000031919) #28	NXPH3 (ENSSBOG00000028337) #29	NGFR (ENSSBOG00000031345) #30	ENSSBOG00000029361 #31	ZNF652 (ENSSBOG00000029507) #32	PHOSPHO1 (ENSSBOG00000031500) #33	ABI3 (ENSSBOG00000013949) #34	GNGT2 (ENSSBOG00000030712) #35	B4GALNT2 (ENSSBOG00000026556) #36	IGF2BP1 (ENSSBOG00000020973)
Capuchin	MODERN SPECIES	123	RSAD1 (ENSCCAG00000029513) #7	CHAD (ENSCCAG00000038046) #9	ENSCCAG00000036017	ACSF2 (ENSCCAG00000023167) #8	LRRC59 (ENSCCAG00000030588) #10	EME1 (ENSCCAG00000029143) #11	ENSCCAG00000027809 #12	XYLT2 (ENSCCAG00000013243) #13	TMEM92 (ENSCCAG00000028039) #14	COL1A1 (ENSCCAG00000021036) #15	SGCA (ENSCCAG00000021320) #16	PPP1R9B (ENSCCAG00000027982) #18	SAMD14 (ENSCCAG00000035479) #19	PDK2 (ENSCCAG00000032710) #20	ITGA3 (ENSCCAG00000036669) #21	DLX3 (ENSCCAG00000025849) #22	DLX4 (ENSCCAG00000031363) #23	TAC4 (ENSCCAG00000027771) #24	ENSCCAG00000023588 #25	FAM117A (ENSCCAG00000027827) #26	SLC35B1 (ENSCCAG00000035827) #27	SPOP (ENSCCAG00000026049) #28	NXPH3 (ENSCCAG00000027739) #29	NGFR (ENSCCAG00000032956) #30	ENSCCAG00000031356 #31	ZNF652 (ENSCCAG00000034341) #32	PHOSPHO1 (ENSCCAG00000031753) #33	ABI3 (ENSCCAG00000034155) #34	GNGT2 (ENSCCAG00000021230) #35	B4GALNT2 (ENSCCAG00000029481) #36	IGF2BP1 (ENSCCAG00000031817)
Mas night monkey	MODERN SPECIES	1105	CHAD (ENSANAG00000034092) #9	ENSANAG00000034008	ACSF2 (ENSANAG00000032214) #8	LRRC59 (ENSANAG00000021578) #10	EME1 (ENSANAG00000033286) #11	MRPL27 (ENSANAG00000007800) #12	XYLT2 (ENSANAG00000020010) #13	TMEM92 (ENSANAG00000028271) #14	ENSANAG00000037824	COL1A1 (ENSANAG00000028537) #15	SGCA (ENSANAG00000032567) #16	PPP1R9B (ENSANAG00000036149) #18	SAMD14 (ENSANAG00000019972) #19	PDK2 (ENSANAG00000028595) #20	ITGA3 (ENSANAG00000031435) #21	DLX3 (ENSANAG00000034222) #22	DLX4 (ENSANAG00000024696) #23	TAC4 (ENSANAG00000033329) #24	KAT7 (ENSANAG00000032052) #25	FAM117A (ENSANAG00000037059) #26	SLC35B1 (ENSANAG00000036126) #27	SPOP (ENSANAG00000025648) #28	NXPH3 (ENSANAG00000030977) #29
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000161826.C	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Tree shrew	MODERN SPECIES	269																DLX3 (ENSTBEG00000015892) #22	ENSTBEG00000015465 #23
Glires	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Rabbit	MODERN SPECIES	10	MYCBPAP (ENSOCUG00000002706)	ENSOCUG00000036140	RSAD1 (ENSOCUG00000002702) #7	ACSF2 (ENSOCUG00000002690) #8	LRRC59 (ENSOCUG00000004613) #10	EME1 (ENSOCUG00000004604) #11	MRPL27 (ENSOCUG00000004601) #12	XYLT2 (ENSOCUG00000004592) #13	TMEM92 (ENSOCUG00000021058) #14	COL1A1 (ENSOCUG00000012881) #15	SGCA (ENSOCUG00000026736) #16	ENSOCUG00000012304	ENSOCUG00000022357 #20	SAMD14 (ENSOCUG00000022140) #19	ITGA3 (ENSOCUG00000009990) #21	DLX3 (ENSOCUG00000007833) #22	DLX4 (ENSOCUG00000022067) #23	TAC4 (ENSOCUG00000023306) #24	KAT7 (ENSOCUG00000000668) #25	FAM117A (ENSOCUG00000016733) #26	SLC35B1 (ENSOCUG00000023120) #27	SPOP (ENSOCUG00000016723) #28	ENSOCUG00000034391	NXPH3 (ENSOCUG00000013921) #29	NGFR (ENSOCUG00000007635) #30	ENSOCUG00000007209 #31	ZNF652 (ENSOCUG00000002965) #32	PHOSPHO1 (ENSOCUG00000016347) #33	ABI3 (ENSOCUG00000016339) #34	GNGT2 (ENSOCUG00000016331) #35	B4GALNT2 (ENSOCUG00000003531) #36
Pika	MODERN SPECIES	143	EPN3 (ENSOPRG00000013374)	MYCBPAP (ENSOPRG00000013326)	RSAD1 (ENSOPRG00000013309) #7	CHAD (ENSOPRG00000013295) #9	ACSF2 (ENSOPRG00000013276) #8	LRRC59 (ENSOPRG00000013264) #10	EME1 (ENSOPRG00000013249) #11	MRPL27 (ENSOPRG00000013236) #12	XYLT2 (ENSOPRG00000013224) #13	ENSOPRG00000013172	ENSOPRG00000013165	SGCA (ENSOPRG00000013155) #16	PPP1R9B (ENSOPRG00000013133) #18	SAMD14 (ENSOPRG00000013126) #19	ITGA3 (ENSOPRG00000013097) #21	DLX3 (ENSOPRG00000013091) #22	DLX4 (ENSOPRG00000013058) #23
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Myomorpha	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Muroidea	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Prairie vole	MODERN SPECIES	15	Chad (ENSMOCG00000003529) #9	ENSMOCG00000019773	ENSMOCG00000018915	Lrrc59 (ENSMOCG00000014423) #10	Eme1 (ENSMOCG00000005748) #11	ENSMOCG00000013199 #12	Xylt2 (ENSMOCG00000009787) #13	ENSMOCG00000017038	Tmem92 (ENSMOCG00000013915) #14	Col1a1 (ENSMOCG00000022060) #15	Sgca (ENSMOCG00000019942) #16	Ppp1r9b (ENSMOCG00000004637) #18	Samd14 (ENSMOCG00000012339) #19	Pdk2 (ENSMOCG00000019896) #20	Itga3 (ENSMOCG00000007772) #21	Dlx3 (ENSMOCG00000019860) #22	Dlx4 (ENSMOCG00000013049) #23	Tac4 (ENSMOCG00000015203) #24	Kat7 (ENSMOCG00000012946) #25	Fam117a (ENSMOCG00000004559) #26	Slc35b1 (ENSMOCG00000006471) #27	Spop (ENSMOCG00000017955) #28	Nxph3 (ENSMOCG00000019725) #29	Ngfr (ENSMOCG00000011552) #30	ENSMOCG00000013553 #31	Zfp652 (ENSMOCG00000017054) #32	Phospho1 (ENSMOCG00000011323) #33	Abi3 (ENSMOCG00000006282) #34	Gngt2 (ENSMOCG00000009807) #35	B4galnt2 (ENSMOCG00000006515) #36	Igf2bp1 (ENSMOCG00000010232)
Northern American deer mouse	MODERN SPECIES	21	Rsad1 (ENSPEMG00000021383) #7	Acsf2 (ENSPEMG00000020965) #8	Chad (ENSPEMG00000025139) #9	Lrrc59 (ENSPEMG00000029228) #10	Eme1 (ENSPEMG00000006307) #11	Mrpl27 (ENSPEMG00000020655) #12	Xylt2 (ENSPEMG00000021056) #13	Tmem92 (ENSPEMG00000021048) #14	Col1a1 (ENSPEMG00000024212) #15	Sgca (ENSPEMG00000021738) #16	ENSPEMG00000024353	Ppp1r9b (ENSPEMG00000020691) #18	Samd14 (ENSPEMG00000020781) #19	Pdk2 (ENSPEMG00000020540) #20	Itga3 (ENSPEMG00000023588) #21	Dlx3 (ENSPEMG00000028715) #22	Dlx4 (ENSPEMG00000004265) #23	Tac4 (ENSPEMG00000014516) #24	Kat7 (ENSPEMG00000020984) #25	Fam117a (ENSPEMG00000020788) #26	ENSPEMG00000021039 #27	ENSPEMG00000026857	Spop (ENSPEMG00000012191) #28	Nxph3 (ENSPEMG00000027912) #29	Ngfr (ENSPEMG00000020336) #30	Phb (ENSPEMG00000021310) #31	Zfp652 (ENSPEMG00000020862) #32	Phospho1 (ENSPEMG00000026539) #33	Abi3 (ENSPEMG00000014242) #34	Gngt2 (ENSPEMG00000027491) #35	B4galnt2 (ENSPEMG00000020717) #36
Cricetinae	ANCESTRAL SPECIES		ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000163054	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Golden Hamster	MODERN SPECIES	674	Epn3 (ENSMAUG00000009495)	Mycbpap (ENSMAUG00000016107)	Rsad1 (ENSMAUG00000008431) #7	Acsf2 (ENSMAUG00000020585) #8	Chad (ENSMAUG00000020237) #9	Lrrc59 (ENSMAUG00000020384) #10	Eme1 (ENSMAUG00000011175) #11	Mrpl27 (ENSMAUG00000015242) #12	Xylt2 (ENSMAUG00000020996) #13	Col1a1 (ENSMAUG00000019272) #15	Sgca (ENSMAUG00000009888) #16	Ppp1r9b (ENSMAUG00000013974) #18	Samd14 (ENSMAUG00000010153) #19	Pdk2 (ENSMAUG00000020321) #20	Itga3 (ENSMAUG00000013250) #21	Dlx3 (ENSMAUG00000011673) #22	Tac4 (ENSMAUG00000006918) #24	ENSMAUG00000018213	Fam117a (ENSMAUG00000018942) #26	Slc35b1 (ENSMAUG00000001422) #27	Spop (ENSMAUG00000001558) #28	ENSMAUG00000008827	Nxph3 (ENSMAUG00000016785) #29	Ngfr (ENSMAUG00000019765) #30	Phb (ENSMAUG00000013028) #31	Zfp652 (ENSMAUG00000009337) #32	Phospho1 (ENSMAUG00000012074) #33	Abi3 (ENSMAUG00000021085) #34	Gngt2 (ENSMAUG00000019144) #35	B4galnt2 (ENSMAUG00000007916) #36	Gip (ENSMAUG00000009238)
Chinese hamster chok1gshd	MODERN SPECIES	33	Acsf2 (ENSCGRG00001006504) #8	Chad (ENSCGRG00001017300) #9	Lrrc59 (ENSCGRG00001003469) #10	Eme1 (ENSCGRG00001012113) #11	Mrpl27 (ENSCGRG00001018944) #12	Xylt2 (ENSCGRG00001021636) #13	ENSCGRG00001017654	ENSCGRG00001022011	Col1a1 (ENSCGRG00001020668) #15	Sgca (ENSCGRG00001019141) #16	H1f9 (ENSCGRG00001005718)	Ppp1r9b (ENSCGRG00001012352) #18	Samd14 (ENSCGRG00001002338) #19	Pdk2 (ENSCGRG00001014853) #20	Itga3 (ENSCGRG00001021353) #21	Dlx3 (ENSCGRG00001022154) #22	Dlx4 (ENSCGRG00001019843) #23	Tac4 (ENSCGRG00001001077) #24	ENSCGRG00001005107	Fam117a (ENSCGRG00001009494) #26	Slc35b1 (ENSCGRG00001006734) #27	Spop (ENSCGRG00001024062) #28	Nxph3 (ENSCGRG00001014680) #29	Ngfr (ENSCGRG00001022139) #30	Phb (ENSCGRG00001008513) #31	Zfp652 (ENSCGRG00001018513) #32	Phospho1 (ENSCGRG00001009639) #33	Abi3 (ENSCGRG00001013274) #34	Gngt2 (ENSCGRG00001021265) #35	B4galnt2 (ENSCGRG00001014272) #36	ENSCGRG00001000282
Murinae	ANCESTRAL SPECIES	6	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Mus	ANCESTRAL SPECIES	2	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT01090000261338	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT01090000261338	ENSGT01090000262445	ENSGT00940000160356.l	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h.jb #31	ENSGT00860000136060	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
spretus	MODERN SPECIES	2	Acsf2 (MGP_SPRETEiJ_G0017831) #8	Chad (MGP_SPRETEiJ_G0017832) #9	Lrrc59 (MGP_SPRETEiJ_G0017833) #10	Eme1 (MGP_SPRETEiJ_G0017834) #11	Mrpl27 (MGP_SPRETEiJ_G0017835) #12	Xylt2 (MGP_SPRETEiJ_G0017836) #13	MGP_SPRETEiJ_G0017837	Cdc34b (MGP_SPRETEiJ_G0017838)	Col1a1 (MGP_SPRETEiJ_G0017839) #15	Sgca (MGP_SPRETEiJ_G0017840) #16	H1f9 (MGP_SPRETEiJ_G0017841)	Ppp1r9b (MGP_SPRETEiJ_G0017842) #18	Samd14 (MGP_SPRETEiJ_G0017843) #19	Pdk2 (MGP_SPRETEiJ_G0017844) #20	Itga3 (MGP_SPRETEiJ_G0017845) #21	Dlx3 (MGP_SPRETEiJ_G0017846) #22	Dlx4 (MGP_SPRETEiJ_G0017847) #23	Tac4 (MGP_SPRETEiJ_G0017848) #24	Kat7 (MGP_SPRETEiJ_G0017849) #25	Fam117a (MGP_SPRETEiJ_G0017850) #26	Slc35b1 (MGP_SPRETEiJ_G0017851) #27	MGP_SPRETEiJ_G0017852 #28	Nxph3 (MGP_SPRETEiJ_G0017853) #29	Ngfr (MGP_SPRETEiJ_G0017854) #30	Phb (MGP_SPRETEiJ_G0017855) #31	Zfp652 (MGP_SPRETEiJ_G0017856) #32	MGP_SPRETEiJ_G0017857	Phospho1 (MGP_SPRETEiJ_G0017858) #33	MGP_SPRETEiJ_G0017859 #34	Gngt2 (MGP_SPRETEiJ_G0017860) #35	B4galnt2 (MGP_SPRETEiJ_G0017861) #36
Steppe mouse	MODERN SPECIES	3291							ENSMSIG00000020048 #14	ENSMSIG00000020040 #14	Col1a1 (ENSMSIG00000019958) #15	H1f9 (ENSMSIG00000019945)	Sgca (ENSMSIG00000019913) #16	Ppp1r9b (ENSMSIG00000019879) #18	Samd14 (ENSMSIG00000019863) #19	Pdk2 (ENSMSIG00000019841) #20	Itga3 (ENSMSIG00000019761) #21	Dlx3 (ENSMSIG00000019752) #22	Dlx4 (ENSMSIG00000019740) #23	Tac4 (ENSMSIG00000019727) #24	Kat7 (ENSMSIG00000019556) #25	Fam117a (ENSMSIG00000019538) #26	Slc35b1 (ENSMSIG00000019515) #27	Spop (ENSMSIG00000019434) #28	Nxph3 (ENSMSIG00000019422) #29	Ngfr (ENSMSIG00000019412) #30	ENSMSIG00000019393 #31	ENSMSIG00000019388	ENSMSIG00000019385	Zfp652 (ENSMSIG00000019372) #32	Phospho1 (ENSMSIG00000019336) #33	Abi3 (ENSMSIG00000019324) #34	Gngt2 (ENSMSIG00000019268) #35
Mouse	MODERN SPECIES	2	Acsf2 (ENSMUSG00000076435) #8	Chad (ENSMUSG00000039084) #9	Lrrc59 (ENSMUSG00000020869) #10	Eme1 (ENSMUSG00000039055) #11	Mrpl27 (ENSMUSG00000024414) #12	Xylt2 (ENSMUSG00000020868) #13	Cdc34b (ENSMUSG00000020870)	Tmem92 (ENSMUSG00000075610) #14	Col1a1 (ENSMUSG00000001506) #15	Sgca (ENSMUSG00000001508) #16	H1f9 (ENSMUSG00000038994)	Ppp1r9b (ENSMUSG00000038976) #18	Samd14 (ENSMUSG00000047181) #19	Pdk2 (ENSMUSG00000038967) #20	Itga3 (ENSMUSG00000001507) #21	Dlx3 (ENSMUSG00000001510) #22	Dlx4 (ENSMUSG00000020871) #23	Tac4 (ENSMUSG00000020872) #24	Kat7 (ENSMUSG00000038909) #25	Fam117a (ENSMUSG00000038893) #26	Slc35b1 (ENSMUSG00000020873) #27	Spop (ENSMUSG00000057522) #28	Nxph3 (ENSMUSG00000046719) #29	Ngfr (ENSMUSG00000000120) #30	Phb (ENSMUSG00000038845) #31	Zfp652 (ENSMUSG00000075595) #32	Phospho1 (ENSMUSG00000050860) #33	Abi3 (ENSMUSG00000018381) #34	Gngt2 (ENSMUSG00000038811) #35	B4galnt2 (ENSMUSG00000013418) #36	Igf2bp1 (ENSMUSG00000013415)
Ryukyu mouse	MODERN SPECIES	2	Chad (MGP_CAROLIEiJ_G0016986) #9	Lrrc59 (MGP_CAROLIEiJ_G0016987) #10	Eme1 (MGP_CAROLIEiJ_G0016988) #11	Mrpl27 (MGP_CAROLIEiJ_G0016989) #12	Xylt2 (MGP_CAROLIEiJ_G0016990) #13	MGP_CAROLIEiJ_G0016991	Cdc34b (MGP_CAROLIEiJ_G0016992)	MGP_CAROLIEiJ_G0016993 #14	Col1a1 (MGP_CAROLIEiJ_G0016994) #15	Sgca (MGP_CAROLIEiJ_G0016995) #16	H1f9 (MGP_CAROLIEiJ_G0016996)	Ppp1r9b (MGP_CAROLIEiJ_G0016997) #18	Samd14 (MGP_CAROLIEiJ_G0016998) #19	Pdk2 (MGP_CAROLIEiJ_G0016999) #20	Itga3 (MGP_CAROLIEiJ_G0017000) #21	Dlx3 (MGP_CAROLIEiJ_G0017001) #22	MGP_CAROLIEiJ_G0017002 #23	Tac4 (MGP_CAROLIEiJ_G0017003) #24	Kat7 (MGP_CAROLIEiJ_G0017004) #25	Fam117a (MGP_CAROLIEiJ_G0017005) #26	Slc35b1 (MGP_CAROLIEiJ_G0017006) #27	MGP_CAROLIEiJ_G0017007 #28	Nxph3 (MGP_CAROLIEiJ_G0017008) #29	Ngfr (MGP_CAROLIEiJ_G0017009) #30	MGP_CAROLIEiJ_G0017010 #31	MGP_CAROLIEiJ_G0017011 #32	Phospho1 (MGP_CAROLIEiJ_G0017012) #33	Abi3 (MGP_CAROLIEiJ_G0017013) #34	Gngt2 (MGP_CAROLIEiJ_G0017014) #35	B4galnt2 (MGP_CAROLIEiJ_G0017015) #36	Igf2bp1 (MGP_CAROLIEiJ_G0017016)
Shrew mouse	MODERN SPECIES	5	Rsad1 (MGP_PahariEiJ_G0018115) #7	Acsf2 (MGP_PahariEiJ_G0018116) #8	Chad (MGP_PahariEiJ_G0018117) #9	Lrrc59 (MGP_PahariEiJ_G0018118) #10	Eme1 (MGP_PahariEiJ_G0018119) #11	Mrpl27 (MGP_PahariEiJ_G0018120) #12	Xylt2 (MGP_PahariEiJ_G0018121) #13	MGP_PahariEiJ_G0018122	Col1a1 (MGP_PahariEiJ_G0018123) #15	Sgca (MGP_PahariEiJ_G0018124) #16	MGP_PahariEiJ_G0018125	Ppp1r9b (MGP_PahariEiJ_G0018126) #18	Samd14 (MGP_PahariEiJ_G0018127) #19	Pdk2 (MGP_PahariEiJ_G0018128) #20	Itga3 (MGP_PahariEiJ_G0018129) #21	Dlx3 (MGP_PahariEiJ_G0018130) #22	Dlx4 (MGP_PahariEiJ_G0018131) #23	MGP_PahariEiJ_G0018132 #24	Kat7 (MGP_PahariEiJ_G0018133) #25	Fam117a (MGP_PahariEiJ_G0018134) #26	Slc35b1 (MGP_PahariEiJ_G0018135) #27	Spop (MGP_PahariEiJ_G0018136) #28	Nxph3 (MGP_PahariEiJ_G0018137) #29	Ngfr (MGP_PahariEiJ_G0018138) #30	MGP_PahariEiJ_G0018139 #31	Zfp652 (MGP_PahariEiJ_G0018140) #32	MGP_PahariEiJ_G0018141	Phospho1 (MGP_PahariEiJ_G0018142) #33	Abi3 (MGP_PahariEiJ_G0018143) #34	Gngt2 (MGP_PahariEiJ_G0018144) #35	B4galnt2 (MGP_PahariEiJ_G0018145) #36
Rat	MODERN SPECIES	1	Mrpl27 (ENSRNOG00000003724) #12	Xylt2 (ENSRNOG00000003728) #13	ENSRNOG00000062464 #14	ENSRNOG00000067153 #14	LOC103693451 (ENSRNOG00000070607) #14	ENSRNOG00000070925 #14	ENSRNOG00000068780 #14	ENSRNOG00000068575	Col1a1 (ENSRNOG00000003897) #15	Sgca (ENSRNOG00000003998) #16	Hils1 (ENSRNOG00000024041)	Ppp1r9b (ENSRNOG00000052113) #18	Samd14 (ENSRNOG00000004155) #19	Pdk2 (ENSRNOG00000004172) #20	Itga3 (ENSRNOG00000004276) #21	Dlx3 (ENSRNOG00000004278) #22	Dlx4 (ENSRNOG00000004399) #23	Tac4 (ENSRNOG00000004404) #24	Kat7 (ENSRNOG00000022664) #25	AABR07030375.1 (ENSRNOG00000022375)	Fam117a (ENSRNOG00000004417) #26	Slc35b1 (ENSRNOG00000004510) #27	Spop (ENSRNOG00000004686) #28	Nxph3 (ENSRNOG00000005185) #29	Ngfr (ENSRNOG00000005392) #30	Phb1 (ENSRNOG00000046799) #31	Zfp652 (ENSRNOG00000017001) #32	ENSRNOG00000068958	Phospho1 (ENSRNOG00000005569) #33	Abi3 (ENSRNOG00000005575) #34	B4galnt2 (ENSRNOG00000067203) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Epn3 (ENSNGAG00000000845)	Mycbpap (ENSNGAG00000022343)	Rsad1 (ENSNGAG00000021237) #7	Chad (ENSNGAG00000020178) #9	Acsf2 (ENSNGAG00000017923) #8	Lrrc59 (ENSNGAG00000015675) #10	Eme1 (ENSNGAG00000014420) #11	Mrpl27 (ENSNGAG00000011345) #12	Xylt2 (ENSNGAG00000022851) #13	Col1a1 (ENSNGAG00000018018) #15	ENSNGAG00000014768 #16	Ppp1r9b (ENSNGAG00000006328) #18	Samd14 (ENSNGAG00000024291) #19	Pdk2 (ENSNGAG00000022231) #20	Itga3 (ENSNGAG00000001240) #21	Dlx3 (ENSNGAG00000022310) #22	Dlx4 (ENSNGAG00000017759) #23	Tac4 (ENSNGAG00000016792) #24	Kat7 (ENSNGAG00000021224) #25	Fam117a (ENSNGAG00000018414) #26	Slc35b1 (ENSNGAG00000017143) #27	ENSNGAG00000011377 #28	Nxph3 (ENSNGAG00000021464) #29	Ngfr (ENSNGAG00000016145) #30	Phb (ENSNGAG00000012333) #31	Zfp652 (ENSNGAG00000010366) #32	Phospho1 (ENSNGAG00000008704) #33	Abi3 (ENSNGAG00000003386) #34	Gngt2 (ENSNGAG00000001081) #35	B4galnt2 (ENSNGAG00000016426) #36	Igf2bp1 (ENSNGAG00000015679)
Lesser Egyptian jerboa	MODERN SPECIES	56	Epn3 (ENSJJAG00000010839)	Mycbpap (ENSJJAG00000010056)	Rsad1 (ENSJJAG00000010782) #7	Chad (ENSJJAG00000004104) #9	Acsf2 (ENSJJAG00000010167) #8	Lrrc59 (ENSJJAG00000009353) #10	Eme1 (ENSJJAG00000010730) #11	Mrpl27 (ENSJJAG00000006271) #12	Xylt2 (ENSJJAG00000010800) #13	Col1a1 (ENSJJAG00000011070) #15	Sgca (ENSJJAG00000006156) #16	Ppp1r9b (ENSJJAG00000008310) #18	Samd14 (ENSJJAG00000004713) #19	Pdk2 (ENSJJAG00000009652) #20	Itga3 (ENSJJAG00000010876) #21	Dlx3 (ENSJJAG00000002767) #22	Dlx4 (ENSJJAG00000008185) #23	Kat7 (ENSJJAG00000010625) #25	Fam117a (ENSJJAG00000008152) #26	Slc35b1 (ENSJJAG00000003707) #27	Spop (ENSJJAG00000004272) #28	Nxph3 (ENSJJAG00000002621) #29	Ngfr (ENSJJAG00000003615) #30	ENSJJAG00000009251 #31	ENSJJAG00000006327	Zfp652 (ENSJJAG00000010496) #32	Phospho1 (ENSJJAG00000010499) #33	Abi3 (ENSJJAG00000002821) #34	Gngt2 (ENSJJAG00000002044) #35	ENSJJAG00000002566	B4galnt2 (ENSJJAG00000006322) #36
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Naked mole-rat female	MODERN SPECIES	12	ACSF2 (ENSHGLG00000011512) #8	CHAD (ENSHGLG00000012429) #9	LRRC59 (ENSHGLG00000048759) #10	EME1 (ENSHGLG00000019198) #11	MRPL27 (ENSHGLG00000016030) #12	XYLT2 (ENSHGLG00000019283) #13	ENSHGLG00000014714	ENSHGLG00000038977 #14	COL1A1 (ENSHGLG00000012240) #15	ENSHGLG00000050519	SGCA (ENSHGLG00000014247) #16	PPP1R9B (ENSHGLG00000014173) #18	SAMD14 (ENSHGLG00000019370) #19	ENSHGLG00000014448 #20	ITGA3 (ENSHGLG00000012904) #21	DLX3 (ENSHGLG00000013267) #22	ENSHGLG00000012373 #23	ENSHGLG00000041037 #24	KAT7 (ENSHGLG00000012906) #25	FAM117A (ENSHGLG00000013356) #26	SLC35B1 (ENSHGLG00000041055) #27	SPOP (ENSHGLG00000041837) #28	NXPH3 (ENSHGLG00000011832) #29	ENSHGLG00000040671	NGFR (ENSHGLG00000012327) #30	ENSHGLG00000011644 #31	ZNF652 (ENSHGLG00000010452) #32	PHOSPHO1 (ENSHGLG00000011269) #33	ABI3 (ENSHGLG00000012283) #34	GNGT2 (ENSHGLG00000048834) #35	B4GALNT2 (ENSHGLG00000011792) #36
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Guinea pig	MODERN SPECIES	53	EPN3 (ENSCPOG00000020362)	MYCBPAP (ENSCPOG00000013284)	RSAD1 (ENSCPOG00000034976) #7	ACSF2 (ENSCPOG00000013278) #8	CHAD (ENSCPOG00000032331) #9	LRRC59 (ENSCPOG00000036326) #10	EME1 (ENSCPOG00000025251) #11	MRPL27 (ENSCPOG00000025999) #12	XYLT2 (ENSCPOG00000013276) #13	COL1A1 (ENSCPOG00000003329) #15	SGCA (ENSCPOG00000031317) #16	PPP1R9B (ENSCPOG00000020296) #18	SAMD14 (ENSCPOG00000034695) #19	PDK2 (ENSCPOG00000021507) #20	ITGA3 (ENSCPOG00000003582) #21	DLX3 (ENSCPOG00000027011) #22	ENSCPOG00000030117 #24	KAT7 (ENSCPOG00000001822) #25	FAM117A (ENSCPOG00000019906) #26	SLC35B1 (ENSCPOG00000003757) #27	SPOP (ENSCPOG00000010810) #28	NXPH3 (ENSCPOG00000037584) #29	NGFR (ENSCPOG00000001114) #30	PHB1 (ENSCPOG00000000430) #31	ZNF652 (ENSCPOG00000039975) #32	PHOSPHO1 (ENSCPOG00000024347) #33	ENSCPOG00000020987 #34	GNGT2 (ENSCPOG00000030054) #35	B4GALNT2 (ENSCPOG00000006191) #36	IGF2BP1 (ENSCPOG00000020174)	GIP (ENSCPOG00000023966)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000158217	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.e.a #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Long-tailed chinchilla	MODERN SPECIES	158	MYCBPAP (ENSCLAG00000013227)	RSAD1 (ENSCLAG00000011905) #7	ACSF2 (ENSCLAG00000014340) #8	CHAD (ENSCLAG00000011933) #9	LRRC59 (ENSCLAG00000012618) #10	EME1 (ENSCLAG00000014745) #11	MRPL27 (ENSCLAG00000012478) #12	XYLT2 (ENSCLAG00000013675) #13	COL1A1 (ENSCLAG00000016259) #15	ENSCLAG00000015566 #16	ENSCLAG00000015827 #16	PPP1R9B (ENSCLAG00000012282) #18	SAMD14 (ENSCLAG00000014202) #19	PDK2 (ENSCLAG00000012203) #20	ITGA3 (ENSCLAG00000015971) #21	DLX3 (ENSCLAG00000013654) #22	DLX4 (ENSCLAG00000014126) #23	KAT7 (ENSCLAG00000013168) #25	FAM117A (ENSCLAG00000014145) #26	SLC35B1 (ENSCLAG00000014530) #27	SPOP (ENSCLAG00000014002) #28	NXPH3 (ENSCLAG00000014709) #29	NGFR (ENSCLAG00000015829) #30	PHB1 (ENSCLAG00000013248) #31	ZNF652 (ENSCLAG00000013368) #32	PHOSPHO1 (ENSCLAG00000015042) #33	ABI3 (ENSCLAG00000015475) #34	GNGT2 (ENSCLAG00000014970) #35	B4GALNT2 (ENSCLAG00000016224) #36	IGF2BP1 (ENSCLAG00000015853)	ENSCLAG00000014301
Degu	MODERN SPECIES	97	EPN3 (ENSODEG00000016963)	MYCBPAP (ENSODEG00000017339)	ENSODEG00000016573 #7	ACSF2 (ENSODEG00000016960) #8	CHAD (ENSODEG00000016909) #9	LRRC59 (ENSODEG00000016947) #10	EME1 (ENSODEG00000016701) #11	MRPL27 (ENSODEG00000016720) #12	XYLT2 (ENSODEG00000016876) #13	COL1A1 (ENSODEG00000017010) #15	SGCA (ENSODEG00000016840) #16	PPP1R9B (ENSODEG00000017914) #18	SAMD14 (ENSODEG00000017349) #19	PDK2 (ENSODEG00000016830) #20	ITGA3 (ENSODEG00000017066) #21	DLX3 (ENSODEG00000016990) #22	DLX4 (ENSODEG00000017011) #23	ENSODEG00000017148	KAT7 (ENSODEG00000016946) #25	FAM117A (ENSODEG00000016996) #26	SLC35B1 (ENSODEG00000016918) #27	ENSODEG00000017139 #28	NXPH3 (ENSODEG00000017090) #29	NGFR (ENSODEG00000017226) #30	ENSODEG00000017118 #31	ENSODEG00000020479	ZNF652 (ENSODEG00000017173) #32	PHOSPHO1 (ENSODEG00000017221) #33	ABI3 (ENSODEG00000017358) #34	GNGT2 (ENSODEG00000017526) #35	B4GALNT2 (ENSODEG00000018456) #36
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Marmotini	ANCESTRAL SPECIES	8	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.g #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744.g #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b.f #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.h #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Arctic ground squirrel	MODERN SPECIES	46	MYCBPAP (ENSUPAG00010005269)	RSAD1 (ENSUPAG00010005559) #7	ACSF2 (ENSUPAG00010005567) #8	CHAD (ENSUPAG00010005568) #9	LRRC59 (ENSUPAG00010005570) #10	EME1 (ENSUPAG00010005578) #11	MRPL27 (ENSUPAG00010005589) #12	XYLT2 (ENSUPAG00010005593) #13	COL1A1 (ENSUPAG00010005604) #15	SGCA (ENSUPAG00010005661) #16	ENSUPAG00010005686	PPP1R9B (ENSUPAG00010005692) #18	SAMD14 (ENSUPAG00010005699) #19	PDK2 (ENSUPAG00010005730) #20	ITGA3 (ENSUPAG00010005752) #21	DLX3 (ENSUPAG00010005796) #22	DLX4 (ENSUPAG00010005802) #23	ENSUPAG00010005806 #24	KAT7 (ENSUPAG00010005813) #25	ENSUPAG00010005976 #26	SLC35B1 (ENSUPAG00010005981) #27	SPOP (ENSUPAG00010005991) #28	NXPH3 (ENSUPAG00010006022) #29	NGFR (ENSUPAG00010006025) #30	PHB1 (ENSUPAG00010006031) #31	ZNF652 (ENSUPAG00010006043) #32	PHOSPHO1 (ENSUPAG00010006065) #33	ABI3 (ENSUPAG00010006071) #34	GNGT2 (ENSUPAG00010006078) #35	B4GALNT2 (ENSUPAG00010006086) #36	IGF2BP1 (ENSUPAG00010006100)
Squirrel	MODERN SPECIES	90	MYCBPAP (ENSSTOG00000011746)	RSAD1 (ENSSTOG00000011733) #7	ACSF2 (ENSSTOG00000011724) #8	CHAD (ENSSTOG00000011729) #9	LRRC59 (ENSSTOG00000008913) #10	EME1 (ENSSTOG00000008904) #11	MRPL27 (ENSSTOG00000008896) #12	XYLT2 (ENSSTOG00000008881) #13	COL1A1 (ENSSTOG00000001973) #15	SGCA (ENSSTOG00000024920) #16	ENSSTOG00000024093	ENSSTOG00000022256 #18	SAMD14 (ENSSTOG00000014861) #19	PDK2 (ENSSTOG00000014856) #20	ITGA3 (ENSSTOG00000014843) #21	DLX3 (ENSSTOG00000010314) #22	DLX4 (ENSSTOG00000026218) #23	ENSSTOG00000007934 #24	KAT7 (ENSSTOG00000021252) #25	FAM117A (ENSSTOG00000007894) #26	SLC35B1 (ENSSTOG00000007868) #27	SPOP (ENSSTOG00000007851) #28	NXPH3 (ENSSTOG00000023834) #29	NGFR (ENSSTOG00000007836) #30	ENSSTOG00000019929 #31	ZNF652 (ENSSTOG00000011303) #32	PHOSPHO1 (ENSSTOG00000007651) #33	ABI3 (ENSSTOG00000020017) #34	GNGT2 (ENSSTOG00000007644) #35	B4GALNT2 (ENSSTOG00000007604) #36	IGF2BP1 (ENSSTOG00000010643)
Alpin marmot	MODERN SPECIES	42	RSAD1 (ENSMMMG00000022425) #7	ACSF2 (ENSMMMG00000022430) #8	CHAD (ENSMMMG00000022440) #9	LRRC59 (ENSMMMG00000022449) #10	EME1 (ENSMMMG00000022456) #11	MRPL27 (ENSMMMG00000022462) #12	XYLT2 (ENSMMMG00000022476) #13	TMEM92 (ENSMMMG00000022692) #14	COL1A1 (ENSMMMG00000022693) #15	ENSMMMG00000022701	SGCA (ENSMMMG00000022707) #16	PPP1R9B (ENSMMMG00000022710) #18	SAMD14 (ENSMMMG00000022727) #19	PDK2 (ENSMMMG00000022729) #20	ITGA3 (ENSMMMG00000022740) #21	DLX3 (ENSMMMG00000022760) #22	DLX4 (ENSMMMG00000022762) #23	ENSMMMG00000000100 #25	FAM117A (ENSMMMG00000000258) #26	SLC35B1 (ENSMMMG00000000273) #27	ENSMMMG00000000303 #28	ENSMMMG00000000355	NXPH3 (ENSMMMG00000000359) #29	NGFR (ENSMMMG00000000369) #30	PHB1 (ENSMMMG00000000385) #31	ZNF652 (ENSMMMG00000000403) #32	PHOSPHO1 (ENSMMMG00000000434) #33	ABI3 (ENSMMMG00000000452) #34	GNGT2 (ENSMMMG00000000525) #35	B4GALNT2 (ENSMMMG00000000569) #36	IGF2BP1 (ENSMMMG00000000613)
Eurasian red squirrel	MODERN SPECIES	12	RSAD1 (ENSSVLG00005001112) #7	CHAD (ENSSVLG00005001097) #9	ACSF2 (ENSSVLG00005001048) #8	ENSSVLG00005000994 #10	EME1 (ENSSVLG00005000966) #11	MRPL27 (ENSSVLG00005000947) #12	XYLT2 (ENSSVLG00005000923) #13	TMEM92 (ENSSVLG00005000899) #14	COL1A1 (ENSSVLG00005000823) #15	ENSSVLG00005000770	SGCA (ENSSVLG00005000732) #16	PPP1R9B (ENSSVLG00005000675) #18	SAMD14 (ENSSVLG00005000645) #19	PDK2 (ENSSVLG00005000596) #20	ITGA3 (ENSSVLG00005000491) #21	DLX3 (ENSSVLG00005000383) #22	DLX4 (ENSSVLG00005000355) #23	TAC4 (ENSSVLG00005000289) #24	KAT7 (ENSSVLG00005000205) #25	ENSSVLG00005021540 #26	SLC35B1 (ENSSVLG00005021505) #27	SPOP (ENSSVLG00005021469) #28	NXPH3 (ENSSVLG00005021450) #29	NGFR (ENSSVLG00005021364) #30	PHB1 (ENSSVLG00005021310) #31	ZNF652 (ENSSVLG00005021244) #32	ENSSVLG00005021191 #33	ABI3 (ENSSVLG00005021097) #34	GNGT2 (ENSSVLG00005021063) #35	B4GALNT2 (ENSSVLG00005020850) #36	IGF2BP1 (ENSSVLG00005020596)
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158951 #22
Hedgehog	MODERN SPECIES	4734																DLX3 (ENSEEUG00000015157) #22
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Carnivora	ANCESTRAL SPECIES	9	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Caniformia	ANCESTRAL SPECIES	6	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Ferret	MODERN SPECIES	270	MYCBPAP (ENSMPUG00000015480)	RSAD1 (ENSMPUG00000015479) #7	CHAD (ENSMPUG00000015476) #9	ACSF2 (ENSMPUG00000015456) #8	LRRC59 (ENSMPUG00000015455) #10	EME1 (ENSMPUG00000015450) #11	MRPL27 (ENSMPUG00000015445) #12	XYLT2 (ENSMPUG00000015443) #13	TMEM92 (ENSMPUG00000015441) #14	COL1A1 (ENSMPUG00000015438) #15	SGCA (ENSMPUG00000015419) #16	PPP1R9B (ENSMPUG00000015418) #18	SAMD14 (ENSMPUG00000015417) #19	PDK2 (ENSMPUG00000015416) #20	ITGA3 (ENSMPUG00000015414) #21	DLX3 (ENSMPUG00000015413) #22	DLX4 (ENSMPUG00000015410) #23	KAT7 (ENSMPUG00000015409) #25	FAM117A (ENSMPUG00000015406) #26	SLC35B1 (ENSMPUG00000015392) #27	SPOP (ENSMPUG00000015389) #28	NXPH3 (ENSMPUG00000015386) #29	ENSMPUG00000015387	NGFR (ENSMPUG00000015384) #30	PHB1 (ENSMPUG00000015381) #31	ZNF652 (ENSMPUG00000015376) #32	PHOSPHO1 (ENSMPUG00000015375) #33	ABI3 (ENSMPUG00000015374) #34	B4GALNT2 (ENSMPUG00000015373) #36	IGF2BP1 (ENSMPUG00000015358)	GIP (ENSMPUG00000015357)
American mink	MODERN SPECIES	92	RSAD1 (ENSNVIG00000007570) #7	CHAD (ENSNVIG00000007549) #9	ACSF2 (ENSNVIG00000007468) #8	LRRC59 (ENSNVIG00000007451) #10	EME1 (ENSNVIG00000007424) #11	MRPL27 (ENSNVIG00000007388) #12	XYLT2 (ENSNVIG00000007249) #13	TMM92 (ENSNVIG00000007219) #14	COL1A1 (ENSNVIG00000007125) #15	ENSNVIG00000007112	SGCA (ENSNVIG00000007083) #16	PPP1R9B (ENSNVIG00000007068) #18	SAMD14 (ENSNVIG00000007053) #19	PDK2 (ENSNVIG00000007031) #20	ITGA3 (ENSNVIG00000006930) #21	DLX3 (ENSNVIG00000006907) #22	DLX4 (ENSNVIG00000006893) #23	TAC4 (ENSNVIG00000006873) #24	KAT7 (ENSNVIG00000006694) #25	FAM117A (ENSNVIG00000006664) #26	SLC35B1 (ENSNVIG00000006645) #27	SPOP (ENSNVIG00000006608) #28	NXPH3 (ENSNVIG00000006600) #29	NGFR (ENSNVIG00000006576) #30	PHB1 (ENSNVIG00000006553) #31	ZNF652 (ENSNVIG00000006521) #32	PHOSPHO1 (ENSNVIG00000006507) #33	ABI3 (ENSNVIG00000006479) #34	GNGT2 (ENSNVIG00000006461) #35	B4GALNT2 (ENSNVIG00000006432) #36	IGF2BP1 (ENSNVIG00000006377)
Ursidae	ANCESTRAL SPECIES	18	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36
Ursus	ANCESTRAL SPECIES	67	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00940000161380 #34	ENSGT01100000263525.b.a.b #35	ENSGT00390000006679.b #36	ENSGT00940000160427
American black bear	MODERN SPECIES	2872															ITGA3 (ENSUAMG00000014271) #21	DLX3 (ENSUAMG00000014269) #22	DLX4 (ENSUAMG00000014268) #23
Giant Panda	MODERN SPECIES	4	RSAD1 (ENSAMEG00000011792) #7	ACSF2 (ENSAMEG00000011804) #8	CHAD (ENSAMEG00000011848) #9	LRRC59 (ENSAMEG00000011852) #10	EME1 (ENSAMEG00000011867) #11	MRPL27 (ENSAMEG00000011876) #12	XYLT2 (ENSAMEG00000011879) #13	ENSAMEG00000026544 #14	COL1A1 (ENSAMEG00000011903) #15	SGCA (ENSAMEG00000012057) #16	ENSAMEG00000012076	PPP1R9B (ENSAMEG00000012080) #18	SAMD14 (ENSAMEG00000012100) #19	PDK2 (ENSAMEG00000012109) #20	ITGA3 (ENSAMEG00000012157) #21	DLX3 (ENSAMEG00000030071) #22	DLX4 (ENSAMEG00000012238) #23	TAC4 (ENSAMEG00000030850) #24	KAT7 (ENSAMEG00000012243) #25	FAM117A (ENSAMEG00000012286) #26	SLC35B1 (ENSAMEG00000012292) #27	SPOP (ENSAMEG00000012318) #28	ENSAMEG00000027101	NXPH3 (ENSAMEG00000026422) #29	NGFR (ENSAMEG00000012352) #30	PHB1 (ENSAMEG00000012364) #31	ZNF652 (ENSAMEG00000012387) #32	PHOSPHO1 (ENSAMEG00000031233) #33	ABI3 (ENSAMEG00000005141) #34	GNGT2 (ENSAMEG00000005139) #35	B4GALNT2 (ENSAMEG00000005108) #36
Canidae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Dingo	MODERN SPECIES	150	RSAD1 (ENSCAFG00020023548) #7	CHAD (ENSCAFG00020023544) #9	ACSF2 (ENSCAFG00020023536) #8	LRRC59 (ENSCAFG00020023533) #10	EME1 (ENSCAFG00020023528) #11	ENSCAFG00020023525 #12	XYLT2 (ENSCAFG00020023521) #13	TMEM92 (ENSCAFG00020023519) #14	COL1A1 (ENSCAFG00020023500) #15	ENSCAFG00020023495	SGCA (ENSCAFG00020023493) #16	PPP1R9B (ENSCAFG00020023485) #18	SAMD14 (ENSCAFG00020023482) #19	PDK2 (ENSCAFG00020023478) #20	ITGA3 (ENSCAFG00020023474) #21	DLX3 (ENSCAFG00020023473) #22	DLX4 (ENSCAFG00020023471) #23	ENSCAFG00020023469 #24	KAT7 (ENSCAFG00020023453) #25	FAM117A (ENSCAFG00020023448) #26	SLC35B1 (ENSCAFG00020023446) #27	SPOP (ENSCAFG00020023443) #28	NXPH3 (ENSCAFG00020023441) #29	NGFR (ENSCAFG00020023430) #30	ENSCAFG00020023425 #31	ZNF652 (ENSCAFG00020023420) #32	PHOSPHO1 (ENSCAFG00020023419) #33	ABI3 (ENSCAFG00020023410) #34	GNGT2 (ENSCAFG00020023405) #35	B4GALNT2 (ENSCAFG00020023386) #36	ENSCAFG00020023382
Dog	MODERN SPECIES	37	RSAD1 (ENSCAFG00845012992) #7	CHAD (ENSCAFG00845012965) #9	CACNA1G (ENSCAFG00845012854) #8	LRRC59 (ENSCAFG00845012791) #10	EME1 (ENSCAFG00845012727) #11	MRPL27 (ENSCAFG00845012696) #12	XYLT2 (ENSCAFG00845012646) #13	TMEM92 (ENSCAFG00845012596) #14	COL1A1 (ENSCAFG00845012504) #15	ENSCAFG00845012468	SGCA (ENSCAFG00845012386) #16	PPP1R9B (ENSCAFG00845012234) #18	SAMD14 (ENSCAFG00845012179) #19	PDK2 (ENSCAFG00845012105) #20	ITGA3 (ENSCAFG00845011823) #21	DLX3 (ENSCAFG00845011753) #22	DLX4 (ENSCAFG00845011727) #23	TAC4 (ENSCAFG00845011705) #24	KAT7 (ENSCAFG00845011515) #25	FAM117A (ENSCAFG00845011405) #26	SLC35B1 (ENSCAFG00845011328) #27	SPOP (ENSCAFG00845011227) #28	NXPH3 (ENSCAFG00845011191) #29	NGFR (ENSCAFG00845011173) #30	ZNF652 (ENSCAFG00845011079) #32	PHB1 (ENSCAFG00845010966) #31	PHOSPHO1 (ENSCAFG00845010884) #33	ABI3 (ENSCAFG00845010830) #34	ENSCAFG00845010742 #31	B4GALNT2 (ENSCAFG00845010693) #36	IGF2BP1 (ENSCAFG00845010596)
Red fox	MODERN SPECIES	20	RSAD1 (ENSVVUG00000004823) #7	CHAD (ENSVVUG00000004817) #9	ACSF2 (ENSVVUG00000004793) #8	LRRC59 (ENSVVUG00000004778) #10	EME1 (ENSVVUG00000004766) #11	ENSVVUG00000004759	XYLT2 (ENSVVUG00000004748) #13	TMEM92 (ENSVVUG00000004742) #14	COL1A1 (ENSVVUG00000004354) #15	ENSVVUG00000004316	SGCA (ENSVVUG00000004312) #16	PPP1R9B (ENSVVUG00000004297) #18	SAMD14 (ENSVVUG00000004274) #19	PDK2 (ENSVVUG00000004251) #20	ITGA3 (ENSVVUG00000004205) #21	DLX3 (ENSVVUG00000004195) #22	DLX4 (ENSVVUG00000004191) #23	KAT7 (ENSVVUG00000003710) #25	FAM117A (ENSVVUG00000003675) #26	SLC35B1 (ENSVVUG00000003665) #27	SPOP (ENSVVUG00000003631) #28	NXPH3 (ENSVVUG00000003626) #29	NGFR (ENSVVUG00000003610) #30	ENSVVUG00000003547 #31	ZNF652 (ENSVVUG00000003513) #32	PHOSPHO1 (ENSVVUG00000003505) #33	ABI3 (ENSVVUG00000003493) #34	GNGT2 (ENSVVUG00000003489) #35	B4GALNT2 (ENSVVUG00000003458) #36	ENSVVUG00000003456 #31	IGF2BP1 (ENSVVUG00000003451)
Felidae	ANCESTRAL SPECIES	8	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Cat	MODERN SPECIES	245	RSAD1 (ENSFCAG00000012335) #7	ACSF2 (ENSFCAG00000012334) #8	CHAD (ENSFCAG00000011301) #9	LRRC59 (ENSFCAG00000031770) #10	EME1 (ENSFCAG00000012332) #11	MRPL27 (ENSFCAG00000037928) #12	XYLT2 (ENSFCAG00000012330) #13	TMEM92 (ENSFCAG00000042623) #14	COL1A1 (ENSFCAG00000004564) #15	SGCA (ENSFCAG00000004560) #16	H1-9 (ENSFCAG00000053017)	PPP1R9B (ENSFCAG00000026527) #18	SAMD14 (ENSFCAG00000039819) #19	PDK2 (ENSFCAG00000009633) #20	ITGA3 (ENSFCAG00000004558) #21	DLX3 (ENSFCAG00000044465) #22	DLX4 (ENSFCAG00000019055) #23	TAC4 (ENSFCAG00000002641) #24	KAT7 (ENSFCAG00000002640) #25	FAM117A (ENSFCAG00000002639) #26	SPOP (ENSFCAG00000002637) #28	NXPH3 (ENSFCAG00000002636) #29	NGFR (ENSFCAG00000046296) #30	PHB1 (ENSFCAG00000042904) #31	ZNF652 (ENSFCAG00000000115) #32	PHOSPHO1 (ENSFCAG00000000113) #33	ABI3 (ENSFCAG00000018571) #34	GNGT2 (ENSFCAG00000039268) #35	B4GALNT2 (ENSFCAG00000018523) #36	IGF2BP1 (ENSFCAG00000002454)	GIP (ENSFCAG00000008946)
Panthera	ANCESTRAL SPECIES	14	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
leopard	MODERN SPECIES	67	MYCBPAP (ENSPPRG00000020455)	RSAD1 (ENSPPRG00000014726) #7	ACSF2 (ENSPPRG00000013112) #8	CHAD (ENSPPRG00000011428) #9	LRRC59 (ENSPPRG00000010949) #10	EME1 (ENSPPRG00000010883) #11	MRPL27 (ENSPPRG00000009444) #12	XYLT2 (ENSPPRG00000009115) #13	TMEM92 (ENSPPRG00000007766) #14	COL1A1 (ENSPPRG00000006898) #15	SGCA (ENSPPRG00000006346) #16	PPP1R9B (ENSPPRG00000002645) #18	SAMD14 (ENSPPRG00000002112) #19	PDK2 (ENSPPRG00000001480) #20	ITGA3 (ENSPPRG00000000879) #21	DLX3 (ENSPPRG00000023791) #22	DLX4 (ENSPPRG00000023879) #23	KAT7 (ENSPPRG00000024404) #25	FAM117A (ENSPPRG00000017338) #26	SLC35B1 (ENSPPRG00000014682) #27	SPOP (ENSPPRG00000014269) #28	NXPH3 (ENSPPRG00000013606) #29	NGFR (ENSPPRG00000013448) #30	PHB1 (ENSPPRG00000012902) #31	ZNF652 (ENSPPRG00000011680) #32	PHOSPHO1 (ENSPPRG00000010125) #33	ABI3 (ENSPPRG00000009966) #34	GNGT2 (ENSPPRG00000009442) #35	B4GALNT2 (ENSPPRG00000008636) #36	IGF2BP1 (ENSPPRG00000008067)	GIP (ENSPPRG00000007119)
lion	MODERN SPECIES	14	MYCBPAP (ENSPLOG00000018604)	RSAD1 (ENSPLOG00000018765) #7	ACSF2 (ENSPLOG00000018860) #8	CHAD (ENSPLOG00000018910) #9	LRRC59 (ENSPLOG00000018949) #10	EME1 (ENSPLOG00000018985) #11	MRPL27 (ENSPLOG00000019107) #12	XYLT2 (ENSPLOG00000019251) #13	TMEM92 (ENSPLOG00000019296) #14	COL1A1 (ENSPLOG00000019378) #15	SGCA (ENSPLOG00000019756) #16	PPP1R9B (ENSPLOG00000019903) #18	SAMD14 (ENSPLOG00000019994) #19	PDK2 (ENSPLOG00000020045) #20	ITGA3 (ENSPLOG00000020140) #21	DLX3 (ENSPLOG00000020385) #22	DLX4 (ENSPLOG00000020407) #23	TAC4 (ENSPLOG00000020433) #24	KAT7 (ENSPLOG00000020520) #25	FAM117A (ENSPLOG00000020662) #26	SPOP (ENSPLOG00000020757) #28	NXPH3 (ENSPLOG00000020789) #29	NGFR (ENSPLOG00000020808) #30	PHB1 (ENSPLOG00000020854) #31	ZNF652 (ENSPLOG00000020894) #32	PHOSPHO1 (ENSPLOG00000020920) #33	ABI3 (ENSPLOG00000020951) #34	GNGT2 (ENSPLOG00000020997) #35	B4GALNT2 (ENSPLOG00000021030) #36	IGF2BP1 (ENSPLOG00000021207)	GIP (ENSPLOG00000021311)
Tiger	DUPLICATION
Tiger	MODERN SPECIES	230																ENSPTIG00000008120 #22	DLX4 (ENSPTIG00000008632) #23	TAC4 (ENSPTIG00000009789) #24	KAT7 (ENSPTIG00000011639) #25	FAM117A (ENSPTIG00000018860) #26	ENSPTIG00000019125	SLC35B1 (ENSPTIG00000019637) #27	SPOP (ENSPTIG00000019935) #28	NXPH3 (ENSPTIG00000000016) #29	ENSPTIG00000005161 #30	PHB1 (ENSPTIG00000008349) #31	ZNF652 (ENSPTIG00000010615) #32	ABI3 (ENSPTIG00000011177) #34	GNGT2 (ENSPTIG00000011802) #35	B4GALNT2 (ENSPTIG00000012803) #36	IGF2BP1 (ENSPTIG00000013291)
Tiger	MODERN SPECIES	247	ENSPTIG00000018414	MYCBPAP (ENSPTIG00000014495)	RSAD1 (ENSPTIG00000013143) #7	CHAD (ENSPTIG00000012789) #9	ACSF2 (ENSPTIG00000006315) #8	LRRC59 (ENSPTIG00000005798) #10	EME1 (ENSPTIG00000019912) #11	MRPL27 (ENSPTIG00000019684) #12	XYLT2 (ENSPTIG00000018441) #13	TMEM92 (ENSPTIG00000017009) #14	COL1A1 (ENSPTIG00000014103) #15	SGCA (ENSPTIG00000012125) #16	ENSPTIG00000011358 #18	PDK2 (ENSPTIG00000008139) #20	ITGA3 (ENSPTIG00000019020) #21	ENSPTIG00000018729 #22
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Equus	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385.o #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Horse	MODERN SPECIES	2	RSAD1 (ENSECAG00000023248) #7	CHAD (ENSECAG00000053781) #9	ACSF2 (ENSECAG00000019245) #8	ENSECAG00000018072 #10	MRPL27 (ENSECAG00000016779) #12	EME1 (ENSECAG00000017079) #11	XYLT2 (ENSECAG00000012454) #13	TMEM92 (ENSECAG00000012367) #14	COL1A1 (ENSECAG00000013693) #15	ENSECAG00000050948	SGCA (ENSECAG00000047470) #16	PPP1R9B (ENSECAG00000011107) #18	SAMD14 (ENSECAG00000008063) #19	PDK2 (ENSECAG00000022822) #20	ITGA3 (ENSECAG00000015760) #21	DLX3 (ENSECAG00000014884) #22	DLX4 (ENSECAG00000033703) #23	TAC4 (ENSECAG00000014863) #24	KAT7 (ENSECAG00000010150) #25	FAM117A (ENSECAG00000008346) #26	SPOP (ENSECAG00000018287) #28	NXPH3 (ENSECAG00000017359) #29	PHB1 (ENSECAG00000017769) #31	ZNF652 (ENSECAG00000016968) #32	PHOSPHO1 (ENSECAG00000016583) #33	ABI3 (ENSECAG00000016070) #30	GNGT2 (ENSECAG00000016054) #35	B4GALNT2 (ENSECAG00000013354) #36	IGF2BP1 (ENSECAG00000009723)	GIP (ENSECAG00000008172)	ENSECAG00000046431
Donkey	MODERN SPECIES	4	RSAD1 (ENSEASG00005018609) #7	ACSF2 (ENSEASG00005018611) #8	CHAD (ENSEASG00005018613) #9	ENSEASG00005018614 #10	EME1 (ENSEASG00005018615) #11	MRPL27 (ENSEASG00005024935) #12	XYLT2 (ENSEASG00005018617) #13	ENSEASG00005018618 #14	COL1A1 (ENSEASG00005018620) #15	ENSEASG00005026086	SGCA (ENSEASG00005018622) #16	PPP1R9B (ENSEASG00005018624) #18	SAMD14 (ENSEASG00005018625) #19	PDK2 (ENSEASG00005018626) #20	ITGA3 (ENSEASG00005018627) #21	DLX3 (ENSEASG00005031122) #22	DLX4 (ENSEASG00005035049) #23	ENSEASG00005027650 #24	KAT7 (ENSEASG00005018633) #25	FAM117A (ENSEASG00005018634) #26	SLC35B1 (ENSEASG00005018635) #27	SPOP (ENSEASG00005018636) #28	NXPH3 (ENSEASG00005037665) #29	NGFR (ENSEASG00005000062) #30	PHB1 (ENSEASG00005000226) #31	ZNF652 (ENSEASG00005000231) #32	PHOSPHO1 (ENSEASG00005036161) #33	ABI3 (ENSEASG00005000248) #34	ENSEASG00005037167 #35	B4GALNT2 (ENSEASG00005000271) #36	IGF2BP1 (ENSEASG00005000301)
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Megabat	MODERN SPECIES	3947													SAMD14 (ENSPVAG00000006866) #19	PDK2 (ENSPVAG00000006864) #20	ITGA3 (ENSPVAG00000006860) #21	DLX3 (ENSPVAG00000006857) #22	DLX4 (ENSPVAG00000006856) #23
Microchiroptera	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Microbat	MODERN SPECIES	1583		ENSMLUG00000005551 #8	LRRC59 (ENSMLUG00000005547) #10	EME1 (ENSMLUG00000005541) #11	MRPL27 (ENSMLUG00000005539) #12	XYLT2 (ENSMLUG00000005532) #13	ENSMLUG00000022739	ENSMLUG00000025931	COL1A1 (ENSMLUG00000001694) #15	SGCA (ENSMLUG00000028417) #16	PPP1R9B (ENSMLUG00000007345) #18	SAMD14 (ENSMLUG00000007326) #19	PDK2 (ENSMLUG00000007303) #20	ITGA3 (ENSMLUG00000005049) #21	ENSMLUG00000004517	DLX3 (ENSMLUG00000007297) #22
Greater horseshoe bat	MODERN SPECIES	13	RSAD1 (ENSRFEG00010021041) #7	ACSF2 (ENSRFEG00010021075) #8	CHAD (ENSRFEG00010021182) #9	LRRC59 (ENSRFEG00010021200) #10	EME1 (ENSRFEG00010021215) #11	MRPL27 (ENSRFEG00010021224) #12	XYLT2 (ENSRFEG00010021240) #13	TMEM92 (ENSRFEG00010021258) #14	COL1A1 (ENSRFEG00010021284) #15	SGCA (ENSRFEG00010021307) #16	ENSRFEG00010021332	PPP1R9B (ENSRFEG00010021343) #18	SAMD14 (ENSRFEG00010021360) #19	PDK2 (ENSRFEG00010021373) #20	ITGA3 (ENSRFEG00010021408) #21	DLX3 (ENSRFEG00010021445) #22	DLX4 (ENSRFEG00010021455) #23	TAC4 (ENSRFEG00010021468) #24	KAT7 (ENSRFEG00010021504) #25	FAM117A (ENSRFEG00010021534) #26	SLC35B1 (ENSRFEG00010021552) #27	SPOP (ENSRFEG00010021569) #28	ENSRFEG00010021578	NXPH3 (ENSRFEG00010021588) #29	NGFR (ENSRFEG00010021593) #30	ENSRFEG00010021606 #31	ZNF652 (ENSRFEG00010021620) #32	PHOSPHO1 (ENSRFEG00010021635) #33	ABI3 (ENSRFEG00010021659) #34	GNGT2 (ENSRFEG00010021682) #35	B4GALNT2 (ENSRFEG00010021694) #36
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Suina	ANCESTRAL SPECIES		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Pig	MODERN SPECIES	3	LRRC59 (ENSSSCG00000028019) #10	EME1 (ENSSSCG00000017571) #11	ENSSSCG00000061531	MRPL27 (ENSSSCG00000023783) #12	XYLT2 (ENSSSCG00000017573) #13	ENSSSCG00000028962	ENSSSCG00000039259	TMEM92 (ENSSSCG00000037168) #14	COL1A1 (ENSSSCG00000036135) #15	ENSSSCG00000031307	SGCA (ENSSSCG00000017583) #16	PPP1R9B (ENSSSCG00000017584) #18	SAMD14 (ENSSSCG00000017585) #19	PDK2 (ENSSSCG00000027198) #20	ITGA3 (ENSSSCG00000017578) #21	DLX3 (ENSSSCG00000017589) #22	DLX4 (ENSSSCG00000034653) #23	TAC4 (ENSSSCG00000038057) #24	KAT7 (ENSSSCG00000017553) #25	FAM117A (ENSSSCG00000017551) #26	SLC35B1 (ENSSSCG00000033731) #27	SPOP (ENSSSCG00000020796) #28	ENSSSCG00000033501	NXPH3 (ENSSSCG00000017552) #29	NGFR (ENSSSCG00000017548) #30	PHB1 (ENSSSCG00000017549) #31	ZNF652 (ENSSSCG00000017546) #32	ENSSSCG00000026701 #33	ENSSSCG00000035224 #34	ENSSSCG00000045794 #35	ENSSSCG00000048918 #36
Chacoan peccary	MODERN SPECIES	145	CHAD (ENSCWAG00000021977) #9	LRRC59 (ENSCWAG00000021978) #10	EME1 (ENSCWAG00000021979) #11	MRPL27 (ENSCWAG00000021980) #12	XYLT2 (ENSCWAG00000021981) #13	RDM1 (ENSCWAG00000021985)	TMEM92 (ENSCWAG00000021987) #14	COL1A1 (ENSCWAG00000021989) #15	SGCA (ENSCWAG00000021996) #16	ENSCWAG00000021999	ENSCWAG00000022000 #18	ENSCWAG00000022001 #18	SAMD14 (ENSCWAG00000022002) #19	PDK2 (ENSCWAG00000022006) #20	ITGA3 (ENSCWAG00000022008) #21	DLX3 (ENSCWAG00000022010) #22	DLX4 (ENSCWAG00000022011) #23	ENSCWAG00000022012 #24	KAT7 (ENSCWAG00000022020) #25	ENSCWAG00000022022	FAM117A (ENSCWAG00000022023) #26	SLC35B1 (ENSCWAG00000022025) #27	SPOP (ENSCWAG00000022026) #28	ENSCWAG00000022027	NXPH3 (ENSCWAG00000022028) #29	NGFR (ENSCWAG00000022030) #30	PHB1 (ENSCWAG00000022033) #31	ZNF652 (ENSCWAG00000022035) #32	PHOSPHO1 (ENSCWAG00000022036) #33	ABI3 (ENSCWAG00000022038) #34	GNGT2 (ENSCWAG00000022039) #35
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Camelidae	ANCESTRAL SPECIES	110									ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30
Arabian camel	MODERN SPECIES	7	B4GALNT2 (ENSCDRG00005016644) #36	ENSCDRG00005016619 #35	ABI3 (ENSCDRG00005016559) #34	PHOSPHO1 (ENSCDRG00005016526) #33	ZNF652 (ENSCDRG00005016507) #32	ENSCDRG00005016485 #31	TMEM92 (ENSCDRG00005016425) #14	ENSCDRG00005016412	COL1A1 (ENSCDRG00005012316) #15	ENSCDRG00005012081	SGCA (ENSCDRG00005011958) #16	PPP1R9B (ENSCDRG00005011814) #18	SAMD14 (ENSCDRG00005011730) #19	PDK2 (ENSCDRG00005011691) #20	ITGA3 (ENSCDRG00005011434) #21	DLX3 (ENSCDRG00005011379) #22	DLX4 (ENSCDRG00005011355) #23	TAC4 (ENSCDRG00005010878) #24	KAT7 (ENSCDRG00005010423) #25	FAM117A (ENSCDRG00005010358) #26	SLC35B1 (ENSCDRG00005010268) #27	SPOP (ENSCDRG00005010198) #28	NXPH3 (ENSCDRG00005010150) #29	NGFR (ENSCDRG00005010099) #30	ENSCDRG00005010071	ENSCDRG00005010031	ENSCDRG00005009987	UNC45B (ENSCDRG00005009329)	NLE1 (ENSCDRG00005008920)	FNDC8 (ENSCDRG00005008856)	RAD51D (ENSCDRG00005008720)
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Pecora	ANCESTRAL SPECIES	1	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Caprinae	ANCESTRAL SPECIES	1	ENSGT00640000091565	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Goat	MODERN SPECIES	10	MYCBPAP (ENSCHIG00000018463)	RSAD1 (ENSCHIG00000024657) #7	ACSF2 (ENSCHIG00000026707) #8	CHAD (ENSCHIG00000013807) #9	LRRC59 (ENSCHIG00000008137) #10	EME1 (ENSCHIG00000016180) #11	MRPL27 (ENSCHIG00000007881) #12	XYLT2 (ENSCHIG00000018461) #13	ENSCHIG00000018450 #14	COL1A1 (ENSCHIG00000021319) #15	SGCA (ENSCHIG00000014532) #16	PPP1R9B (ENSCHIG00000025841) #18	SAMD14 (ENSCHIG00000018967) #19	PDK2 (ENSCHIG00000022189) #20	ITGA3 (ENSCHIG00000015227) #21	DLX3 (ENSCHIG00000010709) #22	DLX4 (ENSCHIG00000010948) #23	ENSCHIG00000013763 #24	KAT7 (ENSCHIG00000025815) #25	FAM117A (ENSCHIG00000012977) #26	SLC35B1 (ENSCHIG00000017359) #27	SPOP (ENSCHIG00000016662) #28	NXPH3 (ENSCHIG00000027224) #29	NGFR (ENSCHIG00000019080) #30	PHB1 (ENSCHIG00000012405) #31	ZNF652 (ENSCHIG00000025825) #32	PHOSPHO1 (ENSCHIG00000020131) #33	ABI3 (ENSCHIG00000025692) #34	GNGT2 (ENSCHIG00000022700) #35	B4GALNT2 (ENSCHIG00000013924) #36	IGF2BP1 (ENSCHIG00000022316)
Rambouillet Sheep	MODERN SPECIES	2	ACSF2 (ENSOARG00020013282) #8	LRRC59 (ENSOARG00020013205) #10	EME1 (ENSOARG00020013136) #11	MRPL27 (ENSOARG00020013058) #12	XYLT2 (ENSOARG00020012883) #13	ENSOARG00020012853	TMEM92 (ENSOARG00020012815) #14	COL1A1 (ENSOARG00020012432) #15	ENSOARG00020012400	ENSOARG00020012345	SGCA (ENSOARG00020012004) #16	PPP1R9B (ENSOARG00020011862) #18	SAMD14 (ENSOARG00020011664) #19	PDK2 (ENSOARG00020011584) #20	ITGA3 (ENSOARG00020011374) #21	DLX3 (ENSOARG00020011314) #22	DLX4 (ENSOARG00020011261) #23	ENSOARG00020011194 #24	KAT7 (ENSOARG00020010890) #25	FAM117A (ENSOARG00020010734) #26	SLC35B1 (ENSOARG00020010577) #27	SPOP (ENSOARG00020010471) #28	NXPH3 (ENSOARG00020010437) #29	NGFR (ENSOARG00020010364) #30	PHB (ENSOARG00020010257) #31	ZNF652 (ENSOARG00020010202) #32	PHOSPHO1 (ENSOARG00020010143) #33	ABI3 (ENSOARG00020010038) #34	GNGT2 (ENSOARG00020009965) #35	B4GALNT2 (ENSOARG00020022870) #36	ENSOARG00020022839
Bovinae	ANCESTRAL SPECIES		ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bos	ANCESTRAL SPECIES	1	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Bos_a	ANCESTRAL SPECIES		ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT01100000263506.a.e.a.a.b.a.b	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Domestic yak	MODERN SPECIES	10	RSAD1 (ENSBGRG00000006561) #7	CHAD (ENSBGRG00000006506) #9	ACSF2 (ENSBGRG00000006209) #8	LRRC59 (ENSBGRG00000006181) #10	ENSBGRG00000006118 #11	MRPL27 (ENSBGRG00000006073) #12	XYLT2 (ENSBGRG00000006039) #13	TMEM92 (ENSBGRG00000005968) #14	ENSBGRG00000005548	ENSBGRG00000005480	SGCA (ENSBGRG00000005458) #16	PPP1R9B (ENSBGRG00000005352) #18	SAMD14 (ENSBGRG00000005298) #19	PDK2 (ENSBGRG00000005164) #20	ITGA3 (ENSBGRG00000004960) #21	DLX3 (ENSBGRG00000004899) #22	DLX4 (ENSBGRG00000004841) #23	ENSBGRG00000004821	ENSBGRG00000004724 #24	KAT7 (ENSBGRG00000004007) #25	FAM117A (ENSBGRG00000023813) #26	SLC35B1 (ENSBGRG00000023699) #27	SPOP (ENSBGRG00000023618) #28	NXPH3 (ENSBGRG00000023572) #29	NGFR (ENSBGRG00000023500) #30	PHB1 (ENSBGRG00000023342) #31	ENSBGRG00000023290	ZNF652 (ENSBGRG00000023208) #32	PHOSPHO1 (ENSBGRG00000023170) #33	ABI3 (ENSBGRG00000022961) #34	B4GALNT2 (ENSBGRG00000022672) #36
Wild yak	MODERN SPECIES	319	ACSF2 (ENSBMUG00000022074) #8	CHAD (ENSBMUG00000022113) #9	LRRC59 (ENSBMUG00000022125) #10	EME1 (ENSBMUG00000022138) #11	MRPL27 (ENSBMUG00000022160) #12	XYLT2 (ENSBMUG00000022230) #13	TMEM92 (ENSBMUG00000022314) #14	ENSBMUG00000022325	COL1A1 (ENSBMUG00000022360) #15	SGCA (ENSBMUG00000022382) #16	ENSBMUG00000022389	ENSBMUG00000022399 #18	SAMD14 (ENSBMUG00000022417) #19	PDK2 (ENSBMUG00000022453) #20	ITGA3 (ENSBMUG00000022523) #21	DLX3 (ENSBMUG00000022535) #22	DLX4 (ENSBMUG00000022545) #23	ENSBMUG00000022551	ENSBMUG00000022574 #24	KAT7 (ENSBMUG00000022650) #25	FAM117A (ENSBMUG00000022672) #26	SLC35B1 (ENSBMUG00000000165) #27	SPOP (ENSBMUG00000000260) #28	NXPH3 (ENSBMUG00000000281) #29	NGFR (ENSBMUG00000000290) #30	PHB1 (ENSBMUG00000000329) #31	ZNF652 (ENSBMUG00000000351) #32	PHOSPHO1 (ENSBMUG00000000370) #33	ABI3 (ENSBMUG00000000408) #34	GNGT2 (ENSBMUG00000000436) #35	B4GALNT2 (ENSBMUG00000000477) #36
Bos_b	ANCESTRAL SPECIES	15	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00960000190593	ENSGT01100000266401	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35
Cow	MODERN SPECIES	10	RSAD1 (ENSBTAG00000021303) #7	ACSF2 (ENSBTAG00000021301) #8	CHAD (ENSBTAG00000021302) #9	LRRC59 (ENSBTAG00000006072) #10	EME1 (ENSBTAG00000021723) #11	MRPL27 (ENSBTAG00000021720) #12	XYLT2 (ENSBTAG00000009298) #13	TMEM92 (ENSBTAG00000054481) #14	COL1A1 (ENSBTAG00000013103) #15	SGCA (ENSBTAG00000003956) #16	H1-9 (ENSBTAG00000043979)	PPP1R9B (ENSBTAG00000049864) #18	SAMD14 (ENSBTAG00000040521) #19	PDK2 (ENSBTAG00000008744) #20	ITGA3 (ENSBTAG00000019498) #21	DLX3 (ENSBTAG00000017409) #22	DLX4 (ENSBTAG00000007353) #23	ENSBTAG00000045805	ENSBTAG00000049677	KAT7 (ENSBTAG00000018699) #25	FAM117A (ENSBTAG00000006886) #26	SLC35B1 (ENSBTAG00000006881) #27	SPOP (ENSBTAG00000005824) #28	ENSBTAG00000054985	NXPH3 (ENSBTAG00000015293) #29	NGFR (ENSBTAG00000020979) #30	PHB1 (ENSBTAG00000017120) #31	ZNF652 (ENSBTAG00000001919) #32	PHOSPHO1 (ENSBTAG00000000033) #33	ABI3 (ENSBTAG00000000032) #34	GNGT2 (ENSBTAG00000047325) #35
Hybrid Bos Indicus	MODERN SPECIES	10	ACSF2 (ENSBIXG00005009154) #8	CHAD (ENSBIXG00005009042) #9	LRRC59 (ENSBIXG00005000367) #10	EME1 (ENSBIXG00005009016) #11	MRPL27 (ENSBIXG00005008979) #12	XYLT2 (ENSBIXG00005000349) #13	ENSBIXG00005008911 #14	COL1A1 (ENSBIXG00005008769) #15	SGCA (ENSBIXG00005000219) #16	ENSBIXG00005008532	PPP1R9B (ENSBIXG00005008518) #18	SAMD14 (ENSBIXG00005008496) #19	PDK2 (ENSBIXG00005008472) #20	ITGA3 (ENSBIXG00005008421) #21	ENSBIXG00005005679	DLX3 (ENSBIXG00005008339) #22	DLX4 (ENSBIXG00005000154) #23	ENSBIXG00005000149	ENSBIXG00005008304	KAT7 (ENSBIXG00005008270) #25	FAM117A (ENSBIXG00005000136) #26	SPOP (ENSBIXG00005008142) #28	NXPH3 (ENSBIXG00005008120) #29	NGFR (ENSBIXG00005008101) #30	PHB1 (ENSBIXG00005008066) #31	ZNF652 (ENSBIXG00005008029) #32	PHOSPHO1 (ENSBIXG00005007996) #33	ABI3 (ENSBIXG00005007948) #34	B4GALNT2 (ENSBIXG00005007929) #36	IGF2BP1 (ENSBIXG00005007917)	GIP (ENSBIXG00005007892)
American bison	MODERN SPECIES	3101	CHAD (ENSBBBG00000000642) #9	ACSF2 (ENSBBBG00000000555) #8	LRRC59 (ENSBBBG00000000544) #10	EME1 (ENSBBBG00000020418) #11	MRPL27 (ENSBBBG00000020427) #12	XYLT2 (ENSBBBG00000020517) #13	TMEM92 (ENSBBBG00000005542) #14	ENSBBBG00000020538	COL1A1 (ENSBBBG00000020594) #15	ENSBBBG00000020655	SGCA (ENSBBBG00000005577) #16	ENSBBBG00000020689 #18	SAMD14 (ENSBBBG00000005584) #19	PDK2 (ENSBBBG00000005588) #20	ITGA3 (ENSBBBG00000020813) #21	DLX3 (ENSBBBG00000020830) #22	DLX4 (ENSBBBG00000020836) #23	ENSBBBG00000020839	ENSBBBG00000020856 #24	KAT7 (ENSBBBG00000021118) #25	FAM117A (ENSBBBG00000021150) #26	SLC35B1 (ENSBBBG00000021167) #27	SPOP (ENSBBBG00000021196) #28	NXPH3 (ENSBBBG00000021209) #29	NGFR (ENSBBBG00000021212) #30	PHB1 (ENSBBBG00000021247) #31	ZNF652 (ENSBBBG00000007191) #32	PHOSPHO1 (ENSBBBG00000005686) #33	ABI3 (ENSBBBG00000021279) #34	GNGT2 (ENSBBBG00000021294) #35	B4GALNT2 (ENSBBBG00000021305) #36
Siberian musk deer	MODERN SPECIES	1210	ACSF2 (ENSMMSG00000024435) #8	CHAD (ENSMMSG00000024437) #9	LRRC59 (ENSMMSG00000024438) #10	EME1 (ENSMMSG00000024439) #11	MRPL27 (ENSMMSG00000024440) #12	XYLT2 (ENSMMSG00000024441) #13	TMEM92 (ENSMMSG00000024442) #14	ENSMMSG00000024443	COL1A1 (ENSMMSG00000024445) #15	SGCA (ENSMMSG00000024448) #16	ENSMMSG00000024449	PPP1R9B (ENSMMSG00000024450) #18	SAMD14 (ENSMMSG00000024451) #19	PDK2 (ENSMMSG00000024453) #20	ITGA3 (ENSMMSG00000024456) #21	DLX3 (ENSMMSG00000024461) #22	DLX4 (ENSMMSG00000024462) #23	TAC4 (ENSMMSG00000024465) #24	KAT7 (ENSMMSG00000024468) #25	FAM117A (ENSMMSG00000024473) #26	SLC35B1 (ENSMMSG00000024476) #27	ENSMMSG00000024479 #28	NXPH3 (ENSMMSG00000024480) #29	NGFR (ENSMMSG00000024482) #30	ENSMMSG00000024484	PHB1 (ENSMMSG00000024486) #31	ZNF652 (ENSMMSG00000024488) #32	PHOSPHO1 (ENSMMSG00000024489) #33	ABI3 (ENSMMSG00000024491) #34	GNGT2 (ENSMMSG00000024493) #35	ENSMMSG00000024495
Yarkand deer	MODERN SPECIES	28	RSAD1 (ENSCHYG00000002873) #7	ACSF2 (ENSCHYG00000002936) #8	CHAD (ENSCHYG00000003066) #9	LRRC59 (ENSCHYG00000003075) #10	EME1 (ENSCHYG00000003086) #11	MRPL27 (ENSCHYG00000003106) #12	XYLT2 (ENSCHYG00000003132) #13	TMEM92 (ENSCHYG00000003173) #14	COL1A1 (ENSCHYG00000003243) #15	SGCA (ENSCHYG00000003594) #16	ENSCHYG00000003614	PPP1R9B (ENSCHYG00000003627) #18	SAMD14 (ENSCHYG00000003655) #19	PDK2 (ENSCHYG00000003696) #20	ITGA3 (ENSCHYG00000003740) #21	DLX3 (ENSCHYG00000003824) #22	DLX4 (ENSCHYG00000003831) #23	ENSCHYG00000003841	ENSCHYG00000003867 #24	KAT7 (ENSCHYG00000003926) #25	FAM117A (ENSCHYG00000004129) #26	SPOP (ENSCHYG00000004194) #28	NXPH3 (ENSCHYG00000004206) #29	NGFR (ENSCHYG00000004216) #30	PHB1 (ENSCHYG00000004248) #31	ZNF652 (ENSCHYG00000004272) #32	ENSCHYG00000004303 #33	ABI3 (ENSCHYG00000004324) #34	B4GALNT2 (ENSCHYG00000004351) #36	IGF2BP1 (ENSCHYG00000004387)	GIP (ENSCHYG00000004425)
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385.m #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Blue whale	MODERN SPECIES	12	RSAD1 (ENSBMSG00010022500) #7	ACSF2 (ENSBMSG00010022503) #8	CHAD (ENSBMSG00010022506) #9	LRRC59 (ENSBMSG00010022507) #10	EME1 (ENSBMSG00010022508) #11	MRPL27 (ENSBMSG00010022510) #12	XYLT2 (ENSBMSG00010022511) #13	TMEM92 (ENSBMSG00010014945) #14	COL1A1 (ENSBMSG00010014990) #15	SGCA (ENSBMSG00010015088) #16	ENSBMSG00010015139	PPP1R9B (ENSBMSG00010015173) #18	SAMD14 (ENSBMSG00010015203) #19	PDK2 (ENSBMSG00010015249) #20	ITGA3 (ENSBMSG00010015331) #21	DLX3 (ENSBMSG00010015657) #22	DLX4 (ENSBMSG00010015698) #23	TAC4 (ENSBMSG00010015794) #24	KAT7 (ENSBMSG00010016090) #25	FAM117A (ENSBMSG00010016280) #26	ENSBMSG00010016392 #27	SPOP (ENSBMSG00010016457) #28	ENSBMSG00010016496	NXPH3 (ENSBMSG00010016515) #29	NGFR (ENSBMSG00010016537) #30	PHB1 (ENSBMSG00010016580) #31	ZNF652 (ENSBMSG00010016625) #32	ENSBMSG00010016656 #33	ABI3 (ENSBMSG00010016693) #34	GNGT2 (ENSBMSG00010016723) #35	B4GALNT2 (ENSBMSG00010016748) #36
Odontoceti	ANCESTRAL SPECIES	16	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385.m #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Odontoceti_a	ANCESTRAL SPECIES	14	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385.m #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Odontoceti_b	ANCESTRAL SPECIES	16	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385.m #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Monodontidae	ANCESTRAL SPECIES	16	ENSGT00940000154464.a #9	ENSGT00940000156830 #8	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a	ENSGT00390000017385.m #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b.a.a #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a.c.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36
Beluga whale	MODERN SPECIES	26	RSAD1 (ENSDLEG00000005284) #7	CHAD (ENSDLEG00000005274) #9	ACSF2 (ENSDLEG00000005263) #8	ENSDLEG00000005261	LRRC59 (ENSDLEG00000005255) #10	EME1 (ENSDLEG00000005249) #11	ENSDLEG00000005241	XYLT2 (ENSDLEG00000005230) #13	TMEM92 (ENSDLEG00000005220) #14	ENSDLEG00000005129	SGCA (ENSDLEG00000005120) #16	PPP1R9B (ENSDLEG00000005110) #18	SAMD14 (ENSDLEG00000005099) #19	PDK2 (ENSDLEG00000005081) #20	ITGA3 (ENSDLEG00000005065) #21	DLX3 (ENSDLEG00000005062) #22	DLX4 (ENSDLEG00000005046) #23	KAT7 (ENSDLEG00000005028) #25	FAM117A (ENSDLEG00000005017) #26	SLC35B1 (ENSDLEG00000005010) #27	SPOP (ENSDLEG00000004995) #28	ENSDLEG00000004990	NXPH3 (ENSDLEG00000004987) #29	NGFR (ENSDLEG00000004981) #30	PHB (ENSDLEG00000004975) #31	ZNF652 (ENSDLEG00000004967) #32	PHOSPHO1 (ENSDLEG00000004963) #33	ABI3 (ENSDLEG00000004950) #34	GNGT2 (ENSDLEG00000004944) #35	B4GALNT2 (ENSDLEG00000004906) #36	IGF2BP1 (ENSDLEG00000004887)
Narwhal	MODERN SPECIES	316	CHAD (ENSMMNG00015022022) #9	ENSMMNG00015022023	ENSMMNG00015022024 #10	EME1 (ENSMMNG00015022025) #11	MRPL27 (ENSMMNG00015022026) #12	XYLT2 (ENSMMNG00015022027) #13	ENSMMNG00015022028	TMEM92 (ENSMMNG00015022029) #14	COL1A1 (ENSMMNG00015022030) #15	SGCA (ENSMMNG00015022031) #16	ENSMMNG00015022032	PPP1R9B (ENSMMNG00015022033) #18	SAMD14 (ENSMMNG00015022034) #19	PDK2 (ENSMMNG00015022035) #20	ITGA3 (ENSMMNG00015022036) #21	DLX3 (ENSMMNG00015022037) #22	DLX4 (ENSMMNG00015022038) #23	TAC4 (ENSMMNG00015022039) #24	KAT7 (ENSMMNG00015022040) #25	ENSMMNG00015022041 #26	SLC35B1 (ENSMMNG00015022042) #27	SPOP (ENSMMNG00015022043) #28	ENSMMNG00015022044	NXPH3 (ENSMMNG00015022045) #29	NGFR (ENSMMNG00015022046) #30	PHB1 (ENSMMNG00015022047) #31	ZNF652 (ENSMMNG00015022048) #32	ENSMMNG00015022049 #33	ABI3 (ENSMMNG00015022050) #34	GNGT2 (ENSMMNG00015022051) #35	B4GALNT2 (ENSMMNG00015022052) #36
Vaquita	MODERN SPECIES	12	RSAD1 (ENSPSNG00000022620) #7	ACSF2 (ENSPSNG00000022621) #8	CHAD (ENSPSNG00000022625) #9	LRRC59 (ENSPSNG00000013150) #10	EME1 (ENSPSNG00000013179) #11	MRPL27 (ENSPSNG00000013243) #12	XYLT2 (ENSPSNG00000013315) #13	TMEM92 (ENSPSNG00000013385) #14	COL1A1 (ENSPSNG00000013479) #15	SGCA (ENSPSNG00000013631) #16	ENSPSNG00000013967	PPP1R9B (ENSPSNG00000014049) #18	SAMD14 (ENSPSNG00000014101) #19	PDK2 (ENSPSNG00000014164) #20	ITGA3 (ENSPSNG00000014254) #21	DLX3 (ENSPSNG00000014423) #22	DLX4 (ENSPSNG00000014503) #23	ENSPSNG00000014556 #24	KAT7 (ENSPSNG00000014685) #25	ENSPSNG00000014915 #26	SLC35B1 (ENSPSNG00000014969) #27	SPOP (ENSPSNG00000015068) #28	ENSPSNG00000015121	NXPH3 (ENSPSNG00000015160) #29	NGFR (ENSPSNG00000015210) #30	PHB1 (ENSPSNG00000015363) #31	ZNF652 (ENSPSNG00000015435) #32	PHOSPHO1 (ENSPSNG00000015535) #33	ABI3 (ENSPSNG00000015585) #34	GNGT2 (ENSPSNG00000015777) #35	B4GALNT2 (ENSPSNG00000015839) #36
Sperm whale	MODERN SPECIES	5	ANKRD40CL (ENSPCTG00005016774)	LUC7L3 (ENSPCTG00005016897)	ANKRD40 (ENSPCTG00005016980)	ABCC3 (ENSPCTG00005017033)	CACNA1G (ENSPCTG00005018367)	SPATA20 (ENSPCTG00005022503)	ENSPCTG00005022511	MYCBPAP (ENSPCTG00005022515)	RSAD1 (ENSPCTG00005022518) #7	ACSF2 (ENSPCTG00005022522) #8	ENSPCTG00005022524	LRRC59 (ENSPCTG00005022526) #10	EME1 (ENSPCTG00005022527) #11	MRPL27 (ENSPCTG00005022528) #12	XYLT2 (ENSPCTG00005022531) #13	DLX3 (ENSPCTG00005022534) #22	DLX4 (ENSPCTG00005022536) #23	TAC4 (ENSPCTG00005022538) #24	KAT7 (ENSPCTG00005022544) #25	FAM117A (ENSPCTG00005004179) #26	SLC35B1 (ENSPCTG00005004200) #27	SPOP (ENSPCTG00005004228) #28	NXPH3 (ENSPCTG00005004256) #29	NGFR (ENSPCTG00005004279) #30	ZNF652 (ENSPCTG00005004307) #32	B4GALNT2 (ENSPCTG00005004337) #36	IGF2BP1 (ENSPCTG00005004404)	GIP (ENSPCTG00005004443)	ENSPCTG00005004464	SNF8 (ENSPCTG00005004481)	ATP5MC1 (ENSPCTG00005004516)
Atlantogenata	ANCESTRAL SPECIES	1	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Xenarthra	ANCESTRAL SPECIES	120		ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29
Sloth	MODERN SPECIES	4433																DLX3 (ENSCHOG00000002762) #22
Armadillo	MODERN SPECIES	281	RSAD1 (ENSDNOG00000014583) #7	ACSF2 (ENSDNOG00000018581) #8	CHAD (ENSDNOG00000018587) #9	LRRC59 (ENSDNOG00000044387) #10	EME1 (ENSDNOG00000043004) #11	MRPL27 (ENSDNOG00000023845) #12	XYLT2 (ENSDNOG00000044594) #13	TMEM92 (ENSDNOG00000043425) #14	ENSDNOG00000049386	COL1A1 (ENSDNOG00000018271) #15	SGCA (ENSDNOG00000049007) #16	ENSDNOG00000042871	SAMD14 (ENSDNOG00000000633) #19	PDK2 (ENSDNOG00000040768) #20	ITGA3 (ENSDNOG00000019283) #21	DLX3 (ENSDNOG00000019410) #22	DLX4 (ENSDNOG00000003720) #23	ENSDNOG00000031493	TAC4 (ENSDNOG00000005468) #24	KAT7 (ENSDNOG00000005454) #25	FAM117A (ENSDNOG00000009271) #26	SLC35B1 (ENSDNOG00000009256) #27	SPOP (ENSDNOG00000008247) #28	NXPH3 (ENSDNOG00000041598) #29
Afrotheria	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Afrotheria_a	ANCESTRAL SPECIES	2	ENSGT00390000011216 #7	ENSGT00940000156830 #8	ENSGT00940000154464.a #9	ENSGT00390000017385 #10	ENSGT00530000063937.a #11	ENSGT00390000014660 #12	ENSGT00940000158326 #13	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00390000015220 #24	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Hyrax	MODERN SPECIES	10525																DLX3 (ENSPCAG00000012751) #22	DLX4 (ENSPCAG00000012730) #23
Elephant	MODERN SPECIES	310	RSAD1 (ENSLAFG00000007022) #7	ACSF2 (ENSLAFG00000007011) #8	CHAD (ENSLAFG00000009516) #9	LRRC59 (ENSLAFG00000000458) #10	EME1 (ENSLAFG00000029329) #11	MRPL27 (ENSLAFG00000018289) #12	XYLT2 (ENSLAFG00000009189) #13	ENSLAFG00000027483 #14	COL1A1 (ENSLAFG00000003435) #15	SGCA (ENSLAFG00000022047) #16	ENSLAFG00000030707	PPP1R9B (ENSLAFG00000023325) #18	SAMD14 (ENSLAFG00000021674) #19	PDK2 (ENSLAFG00000031711) #20	ITGA3 (ENSLAFG00000002548) #21	DLX3 (ENSLAFG00000028511) #22	DLX4 (ENSLAFG00000013453) #23	TAC4 (ENSLAFG00000015318) #24	KAT7 (ENSLAFG00000002796) #25	FAM117A (ENSLAFG00000029848) #26	SLC35B1 (ENSLAFG00000002794) #27	SPOP (ENSLAFG00000003311) #28	NXPH3 (ENSLAFG00000003309) #29	NGFR (ENSLAFG00000003584) #30	PHB1 (ENSLAFG00000010087) #31	ZNF652 (ENSLAFG00000010084) #32	PHOSPHO1 (ENSLAFG00000031084) #33	ABI3 (ENSLAFG00000001493) #34	GNGT2 (ENSLAFG00000025568) #35	B4GALNT2 (ENSLAFG00000010563) #36	IGF2BP1 (ENSLAFG00000002048)
Marsupialia	ANCESTRAL SPECIES	13	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00730000111487	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Marsupialia_b	ANCESTRAL SPECIES	16	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000111487	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Diprotodontia	ANCESTRAL SPECIES	9	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Diprotodontia_a	ANCESTRAL SPECIES	11	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00530000064295	ENSGT00940000155348.B	ENSGT00390000014943 #14	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000162259 #23	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000185094	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.b #36	ENSGT00940000160427
Common wonbat	MODERN SPECIES	1037	TMUB2 (ENSVURG00010008334)	ASB16 (ENSVURG00010008324)	HROB (ENSVURG00010008307)	HDAC5 (ENSVURG00010008262)	G6PC3 (ENSVURG00010008245)	LSM12 (ENSVURG00010008238)	TMEM101 (ENSVURG00010008234)	NAGS (ENSVURG00010008226)	MPP2 (ENSVURG00010008156)	COL1A1 (ENSVURG00010008141) #15	SGCA (ENSVURG00010008123) #16	PPP1R9B (ENSVURG00010008112) #18	SAMD14 (ENSVURG00010008102) #19	PDK2 (ENSVURG00010008089) #20	ITGA3 (ENSVURG00010008033) #21	DLX3 (ENSVURG00010008014) #22	DLX4 (ENSVURG00010008009) #23	ENSVURG00010007979	KAT7 (ENSVURG00010007939) #25	FAM117A (ENSVURG00010007908) #26	SLC35B1 (ENSVURG00010007896) #27	SPOP (ENSVURG00010007867) #28	NXPH3 (ENSVURG00010007859) #29	NGFR (ENSVURG00010007851) #30	PHB1 (ENSVURG00010007822) #31	ZNF652 (ENSVURG00010007816) #32	PHOSPHO1 (ENSVURG00010007795) #33	ABI3 (ENSVURG00010007788) #34	GNGT2 (ENSVURG00010007781) #35	B4GALNT2 (ENSVURG00010007761) #36	IGF2BP1 (ENSVURG00010007702)
koala	MODERN SPECIES	67	G6PC3 (ENSPCIG00000020242)	LSM12 (ENSPCIG00000020244)	TMEM101 (ENSPCIG00000020245)	NAGS (ENSPCIG00000020247)	ENSPCIG00000020248	ENSPCIG00000031169	ENSPCIG00000002999	MPP2 (ENSPCIG00000020252)	ENSPCIG00000020256 #14	COL1A1 (ENSPCIG00000029160) #15	SGCA (ENSPCIG00000029161) #16	PPP1R9B (ENSPCIG00000029162) #18	SAMD14 (ENSPCIG00000029163) #19	PDK2 (ENSPCIG00000029164) #20	ITGA3 (ENSPCIG00000029165) #21	DLX3 (ENSPCIG00000029166) #22	DLX4 (ENSPCIG00000029167) #23	KAT7 (ENSPCIG00000013089) #25	FAM117A (ENSPCIG00000013096) #26	SLC35B1 (ENSPCIG00000013098) #27	SPOP (ENSPCIG00000013101) #28	ENSPCIG00000013102	NXPH3 (ENSPCIG00000013103) #29	NGFR (ENSPCIG00000014398) #30	PHB1 (ENSPCIG00000013104) #31	ZNF652 (ENSPCIG00000013105) #32	ENSPCIG00000013106	PHOSPHO1 (ENSPCIG00000013107) #33	ABI3 (ENSPCIG00000013108) #34	GNGT2 (ENSPCIG00000013109) #35	B4GALNT2 (ENSPCIG00000003606) #36
Wallaby	MODERN SPECIES	6024																DLX3 (ENSMEUG00000004205) #22
Tasmanian devil	MODERN SPECIES	3	G6PC3 (ENSSHAG00000015015)	ENSSHAG00000022394	NAGS (ENSSHAG00000014836)	ENSSHAG00000030220	ENSSHAG00000025840	ENSSHAG00000021813	ENSSHAG00000026253	ENSSHAG00000014013 #14	COL1A1 (ENSSHAG00000013444) #15	SGCA (ENSSHAG00000013308) #16	ENSSHAG00000026226	SAMD14 (ENSSHAG00000021640) #19	PPP1R9B (ENSSHAG00000029473) #18	PDK2 (ENSSHAG00000012889) #20	ITGA3 (ENSSHAG00000012691) #21	DLX3 (ENSSHAG00000012177) #22	DLX4 (ENSSHAG00000011988) #23	KAT7 (ENSSHAG00000010137) #25	FAM117A (ENSSHAG00000009386) #26	SLC35B1 (ENSSHAG00000028015) #27	SPOP (ENSSHAG00000021587) #28	NXPH3 (ENSSHAG00000007677) #29	NGFR (ENSSHAG00000006168) #30	PHB1 (ENSSHAG00000025219) #31	PHOSPHO1 (ENSSHAG00000020969) #33	ABI3 (ENSSHAG00000023845) #34	ENSSHAG00000014937 #36	ENSSHAG00000014639 #36	IGF2BP1 (ENSSHAG00000014259)	ENSSHAG00000014119	SNF8 (ENSSHAG00000013985)
Opossum	MODERN SPECIES	1	G6PC3 (ENSMODG00000011804)	LSM12 (ENSMODG00000011809)	TMEM101 (ENSMODG00000043632)	NAGS (ENSMODG00000011832)	ENSMODG00000011848	MPP2 (ENSMODG00000011864)	ENSMODG00000011871 #14	COL1A1 (ENSMODG00000011945) #15	ENSMODG00000043992	SGCA (ENSMODG00000011969) #16	ENSMODG00000037352	PPP1R9B (ENSMODG00000012010) #18	SAMD14 (ENSMODG00000024070) #19	PDK2 (ENSMODG00000012026) #20	ITGA3 (ENSMODG00000012090) #21	DLX3 (ENSMODG00000012098) #22	DLX4 (ENSMODG00000012104) #23	ENSMODG00000013640	KAT7 (ENSMODG00000012142) #25	SLC35B1 (ENSMODG00000012166) #26	SPOP (ENSMODG00000046008) #28	NXPH3 (ENSMODG00000037958) #29	NGFR (ENSMODG00000012200) #30	PHB1 (ENSMODG00000012210) #31	ZNF652 (ENSMODG00000012215) #32	PHOSPHO1 (ENSMODG00000012217) #33	ABI3 (ENSMODG00000012233) #34	GNGT2 (ENSMODG00000048984) #35	B4GALNT2 (ENSMODG00000012242) #36	ENSMODG00000047325	IGF2BP1 (ENSMODG00000012268)
Platypus	MODERN SPECIES	2	ENSOANG00000040577	HDAC5 (ENSOANG00000044276)	ENSOANG00000039130	ENSOANG00000037512	LSM12 (ENSOANG00000046842)	TMEM101 (ENSOANG00000043785)	ENSOANG00000020867	MPP2 (ENSOANG00000045593)	ENSOANG00000040238	COL1A1 (ENSOANG00000001736) #15	SGCA (ENSOANG00000009519) #16	PPP1R9B (ENSOANG00000009521) #18	SAMD14 (ENSOANG00000013429) #19	PDK2 (ENSOANG00000039603) #20	ITGA3 (ENSOANG00000000624) #21	DLX3 (ENSOANG00000041076) #22	ENSOANG00000036467 #23	KAT7 (ENSOANG00000044742) #25	FAM117A (ENSOANG00000051323) #26	ENSOANG00000038252 #27	SPOP (ENSOANG00000050936) #28	ENSOANG00000043058 #29	NGFR (ENSOANG00000000447) #30	PHB1 (ENSOANG00000003080) #31	ZNF652 (ENSOANG00000039038) #32	PHOSPHO1 (ENSOANG00000042855) #33	ABI3 (ENSOANG00000050932) #34	GNGT2 (ENSOANG00000037597) #35	B4GALNT2 (ENSOANG00000042946) #36	IGF2BP1 (ENSOANG00000014859)	SNF8 (ENSOANG00000050758)
Sauria	ANCESTRAL SPECIES	26	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Lepidosauria	ANCESTRAL SPECIES	23	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Episquamata	ANCESTRAL SPECIES	5	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Laterata	ANCESTRAL SPECIES	11	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000113862	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Argentine black and white tegu	MODERN SPECIES	32	ETV4 (ENSSMRG00000021778)	TMEM101 (ENSSMRG00000021779)	ENSSMRG00000021780	ENSSMRG00000021781	ENSSMRG00000021782	ENSSMRG00000021783	MPP2 (ENSSMRG00000021784)	COL1A1 (ENSSMRG00000021785) #15	SGCA (ENSSMRG00000021786) #16	ENSSMRG00000021787	PPP1R9B (ENSSMRG00000021788) #18	SAMD14 (ENSSMRG00000021789) #19	PDK2 (ENSSMRG00000021790) #20	ITGA3 (ENSSMRG00000021791) #21	ENSSMRG00000021792	DLX3 (ENSSMRG00000021793) #22	ENSSMRG00000021794	KAT7 (ENSSMRG00000021795) #25	FAM117A (ENSSMRG00000021796) #26	SLC35B1 (ENSSMRG00000021798) #27	SPOP (ENSSMRG00000021800) #28	NXPH3 (ENSSMRG00000021801) #29	NGFR (ENSSMRG00000021802) #30	ENSSMRG00000021803	PHB1 (ENSSMRG00000021805) #31	ZNF652 (ENSSMRG00000021807) #32	PHOSPHO1 (ENSSMRG00000021809) #33	ABI3 (ENSSMRG00000021810) #34	GNGT2 (ENSSMRG00000021812) #35	B4GALNT2 (ENSSMRG00000021814) #36	IGF2BP1 (ENSSMRG00000021826)
Common wall lizard	MODERN SPECIES	4	MEOX1 (ENSPMRG00000012481)	ETV4 (ENSPMRG00000012491)	TMEM101 (ENSPMRG00000012512)	ENSPMRG00000012534	ENSPMRG00000012538	ENSPMRG00000012541	MPP2 (ENSPMRG00000012561)	COL1A1 (ENSPMRG00000012631) #15	ENSPMRG00000012651 #16	ENSPMRG00000012660	ENSPMRG00000012662	PPP1R9B (ENSPMRG00000012665) #18	SAMD14 (ENSPMRG00000012670) #19	PDK2 (ENSPMRG00000012681) #20	ITGA3 (ENSPMRG00000012742) #21	DLX3 (ENSPMRG00000012973) #22	ENSPMRG00000012978	ENSPMRG00000012987	KAT7 (ENSPMRG00000013003) #25	FAM117A (ENSPMRG00000013011) #26	SLC35B1 (ENSPMRG00000013020) #27	SPOP (ENSPMRG00000013026) #28	NXPH3 (ENSPMRG00000013030) #29	NGFR (ENSPMRG00000013033) #30	ENSPMRG00000013039 #31	ZNF652 (ENSPMRG00000013044) #32	PHOSPHO1 (ENSPMRG00000013052) #33	ABI3 (ENSPMRG00000013058) #34	GNGT2 (ENSPMRG00000013069) #35	ENSPMRG00000013076 #36	IGF2BP1 (ENSPMRG00000013095)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744.i #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b.eb #31	ENSGT00940000157416.q #32	ENSGT00390000007741.a #33	ENSGT00940000161380.d.a #34	ENSGT00940000161380.c #34	ENSGT00940000161380.d.b #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427
Elapidae_a	ANCESTRAL SPECIES	62	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000113862	ENSGT00940000158833.e.a #18	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22
Acanthophiinae	ANCESTRAL SPECIES	59	ENSGT00940000169006	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00730000113862	ENSGT00940000158833.e.b #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22
Mainland tiger snake	MODERN SPECIES	29	DUSP3 (ENSNSUG00000006858)	SOST (ENSNSUG00000006859)	MEOX1 (ENSNSUG00000006860)	ETV4 (ENSNSUG00000006861)	TMEM101 (ENSNSUG00000006883)	ENSNSUG00000006884	MPP2 (ENSNSUG00000006889)	COL1A1 (ENSNSUG00000006962) #15	SGCA (ENSNSUG00000006963) #16	ENSNSUG00000006964	ENSNSUG00000006965 #18	ENSNSUG00000006966 #18	SAMD14 (ENSNSUG00000006967) #19	PDK2 (ENSNSUG00000006968) #20	ITGA3 (ENSNSUG00000007042) #21	DLX3 (ENSNSUG00000007074) #22	ENSNSUG00000007075	KAT7 (ENSNSUG00000007077) #25	FAM117A (ENSNSUG00000007391) #26	SLC35B1 (ENSNSUG00000007396) #27	SPOP (ENSNSUG00000007398) #28	NXPH3 (ENSNSUG00000007399) #29	NGFR (ENSNSUG00000007403) #30	ENSNSUG00000007404 #31	ZNF652 (ENSNSUG00000007405) #32	PHOSPHO1 (ENSNSUG00000007407) #33	ABI3 (ENSNSUG00000007411) #34	GNGT2 (ENSNSUG00000007414) #35	IGF2BP1 (ENSNSUG00000007416)	ENSNSUG00000007425	SNF8 (ENSNSUG00000007427)
Eastern brown snake	MODERN SPECIES	49	DUSP3 (ENSPTXG00000013829)	SOST (ENSPTXG00000013830)	MEOX1 (ENSPTXG00000013831)	ETV4 (ENSPTXG00000013833)	TMEM101 (ENSPTXG00000013835)	ENSPTXG00000013836	MPP2 (ENSPTXG00000013837)	COL1A1 (ENSPTXG00000013838) #15	SGCA (ENSPTXG00000013840) #16	ENSPTXG00000013841	PPP1R9B (ENSPTXG00000013842) #18	SAMD14 (ENSPTXG00000013843) #19	PDK2 (ENSPTXG00000013844) #20	ITGA3 (ENSPTXG00000013850) #21	ENSPTXG00000013852	DLX3 (ENSPTXG00000013853) #22	ENSPTXG00000013854	ENSPTXG00000013855 #25	FAM117A (ENSPTXG00000013856) #26	SLC35B1 (ENSPTXG00000013857) #27	SPOP (ENSPTXG00000013861) #28	NXPH3 (ENSPTXG00000013865) #29	NGFR (ENSPTXG00000013867) #30	ENSPTXG00000013869 #31	ZNF652 (ENSPTXG00000013871) #32	PHOSPHO1 (ENSPTXG00000013872) #33	ABI3 (ENSPTXG00000013874) #34	ENSPTXG00000013875	IGF2BP1 (ENSPTXG00000013878)	SNF8 (ENSPTXG00000013881)	UBE2Z (ENSPTXG00000013882)
Blue-lipped sea krait	MODERN SPECIES	3166																DLX3 (ENSLLTG00000005305) #22	ENSLLTG00000005313
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	337	DUSP3 (ENSNNAG00000004188)	SOST (ENSNNAG00000004179)	MEOX1 (ENSNNAG00000004166)	ETV4 (ENSNNAG00000004108)	TMEM101 (ENSNNAG00000004085)	ENSNNAG00000004067	MPP2 (ENSNNAG00000004031)	COL1A1 (ENSNNAG00000003840) #15	ENSNNAG00000003815	SGCA (ENSNNAG00000003757) #16	ENSNNAG00000003735 #18	SAMD14 (ENSNNAG00000003694) #19	PDK2 (ENSNNAG00000003652) #20	ITGA3 (ENSNNAG00000003538) #21	ENSNNAG00000010645	ENSNNAG00000010612 #22	ENSNNAG00000010565	ENSNNAG00000010094 #25	FAM117A (ENSNNAG00000010029) #26	SLC35B1 (ENSNNAG00000009983) #27	SPOP (ENSNNAG00000009952) #28	NXPH3 (ENSNNAG00000009934) #29	NGFR (ENSNNAG00000009911) #30	ENSNNAG00000009883 #31	ENSNNAG00000009859 #32	PHOSPHO1 (ENSNNAG00000009831) #33	ENSNNAG00000009817 #34	ENSNNAG00000009796 #34	GNGT2 (ENSNNAG00000009770) #35	B4GALNT2 (ENSNNAG00000009682) #36	IGF2BP1 (ENSNNAG00000009591)
Indian cobra	MODERN SPECIES	33															ENSNNAG00000010758 #32	ENSNNAG00000010792 #22	ENSNNAG00000010834
Lizard	MODERN SPECIES	5	ENSACAG00000004967	ENSACAG00000035782	MPP2 (ENSACAG00000004972)	ENSACAG00000022717	ENSACAG00000005026	COL1A1 (ENSACAG00000005084) #15	ENSACAG00000039670	ENSACAG00000024181	SGCA (ENSACAG00000023160) #16	PPP1R9B (ENSACAG00000005320) #18	ENSACAG00000044410 #19	ENSACAG00000024778 #19	PDK2 (ENSACAG00000005384) #20	ENSACAG00000005508 #21	ENSACAG00000045206	DLX3 (ENSACAG00000039737) #22	ENSACAG00000040935	KAT7 (ENSACAG00000005025) #25	FAM117A (ENSACAG00000004992) #26	SLC35B1 (ENSACAG00000004966) #27	SPOP (ENSACAG00000004879) #28	NXPH3 (ENSACAG00000040242) #29	NGFR (ENSACAG00000004836) #30	ENSACAG00000004797 #31	ZNF652 (ENSACAG00000006063) #32	PHOSPHO1 (ENSACAG00000006108) #33	ENSACAG00000006110 #34	GNGT2 (ENSACAG00000041539) #35	ENSACAG00000041178	ENSACAG00000034571	ENSACAG00000006165 #36
tuatara	MODERN SPECIES	1841											ENSSPUG00000015257 #16	PPP1R9B (ENSSPUG00000015244) #18	SAMD14 (ENSSPUG00000015172) #19	PDK2 (ENSSPUG00000015124) #20	ITGA3 (ENSSPUG00000015081) #21	DLX3 (ENSSPUG00000015063) #22	ENSSPUG00000015003	KAT7 (ENSSPUG00000014920) #25	FAM117A (ENSSPUG00000014901) #26	SPOP (ENSSPUG00000014851) #28
Archelosauria	ANCESTRAL SPECIES	21	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Archosauria	ANCESTRAL SPECIES	20	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Aves	ANCESTRAL SPECIES	26	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae	ANCESTRAL SPECIES	23	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae_b	ANCESTRAL SPECIES	23	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Neognathae_c	ANCESTRAL SPECIES	26	ENSGT00400000022305	ENSGT00940000160534	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121	ENSGT00390000007843.cb
Golden eagle	MODERN SPECIES	24	ASB16 (ENSACCG00020012606)	HROB (ENSACCG00020012573)	HDAC5 (ENSACCG00020012220)	G6PC3 (ENSACCG00020011848)	LSM12 (ENSACCG00020011812)	TMEM101 (ENSACCG00020011792)	PYY (ENSACCG00020011766)	ENSACCG00020011728	MPP2 (ENSACCG00020011698)	ENSACCG00020011586	SGCA (ENSACCG00020011502) #16	PPP1R9B (ENSACCG00020011480) #18	SAMD14 (ENSACCG00020011440) #19	PDK2 (ENSACCG00020011423) #20	ITGA3 (ENSACCG00020006218) #21	DLX3 (ENSACCG00020006186) #22	ENSACCG00020006173	KAT7 (ENSACCG00020006157) #25	FAM117A (ENSACCG00020006125) #26	SLC35B1 (ENSACCG00020006114) #27	SPOP (ENSACCG00020006096) #28	NXPH3 (ENSACCG00020006088) #29	NGFR (ENSACCG00020006079) #30	PHB1 (ENSACCG00020006063) #31	ZNF652 (ENSACCG00020006049) #32	PHOSPHO1 (ENSACCG00020006039) #33	ABI3 (ENSACCG00020006027) #34	GNGT2 (ENSACCG00020006019) #35	IGF2BP1 (ENSACCG00020006001)	GIP (ENSACCG00020005975)	SNF8 (ENSACCG00020005957)
Kakapo	MODERN SPECIES	12	TBX21 (ENSSHBG00005009578)	OSBPL7 (ENSSHBG00005009643)	MRPL10 (ENSSHBG00005009737)	ENSSHBG00005009744	SCRN2 (ENSSHBG00005009758)	SP6 (ENSSHBG00005009774)	SP2 (ENSSHBG00005009786)	PNPO (ENSSHBG00005009805)	PRR15L (ENSSHBG00005009820)	CDK5RAP3 (ENSSHBG00005009863)	ENSSHBG00005009936	ENSSHBG00005009950	ENSSHBG00005009969	ENSSHBG00005009990	ENSSHBG00005010020	DLX3 (ENSSHBG00005010048) #22	ENSSHBG00005010082	ENSSHBG00005010109	FTSJ3 (ENSSHBG00005010153)	PSMC5 (ENSSHBG00005010198)	SMARCD2 (ENSSHBG00005010280)	ASIC2 (ENSSHBG00005010612)	ENSSHBG00005010657	CRHR1 (ENSSHBG00005010679)	ITGB3 (ENSSHBG00005010742)	ENSSHBG00005010805	ENSSHBG00005010839	TLK2 (ENSSHBG00005010903)	MRC2 (ENSSHBG00005011279)	TANC2 (ENSSHBG00005011840)	CYB561 (ENSSHBG00005011939)
Passeriformes	ANCESTRAL SPECIES	41	ENSGT00940000158253	ENSGT00390000014069.b	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000163054.a.b	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000154957.A	ENSGT00940000160427
Great tit	MODERN SPECIES	271															ITGA3 (ENSPMJG00000007216) #21	DLX3 (ENSPMJG00000007210) #22	ENSPMJG00000007206	ENSPMJG00000006826	SLC35B1 (ENSPMJG00000006824) #27	SPOP (ENSPMJG00000006814) #28	NXPH3 (ENSPMJG00000006810) #29	NGFR (ENSPMJG00000006807) #30	PHB1 (ENSPMJG00000006803) #31	ZNF652 (ENSPMJG00000006802) #32	PHOSPHO1 (ENSPMJG00000006801) #33	ENSPMJG00000006798 #34	ENSPMJG00000006796	ENSPMJG00000006794	ENSPMJG00000006790	HOXB13 (ENSPMJG00000006787)
Passeriformes_d	ANCESTRAL SPECIES	37	ENSGT00940000157423	ENSGT00940000161141	ENSGT00940000158253	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000154957.A	ENSGT00940000160427	ENSGT00940000154298.a.b	ENSGT00940000159091	ENSGT00390000007843.bb.a
Passeriformes_g	ANCESTRAL SPECIES	26	ENSGT00940000157423	ENSGT00940000161141	ENSGT00940000158253	ENSGT00940000160773	ENSGT00400000022305	ENSGT00940000160534.t	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000158833 #18	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000157744 #25	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT00940000160427
Medium ground finch	MODERN SPECIES	383													PPP1R9B (ENSGFOG00000013700) #18	PDK2 (ENSGFOG00000013702) #20	ITGA3 (ENSGFOG00000013706) #21	DLX3 (ENSGFOG00000013711) #22	KAT7 (ENSGFOG00000013720) #25	SLC35B1 (ENSGFOG00000013728) #27	SPOP (ENSGFOG00000013729) ##28	NGFR (ENSGFOG00000013735) #30
Flycatcher	MODERN SPECIES	19	ENSFALG00000004736	ENSFALG00000004713	ENSFALG00000004686	DDX42 (ENSFALG00000004675)	CCDC47 (ENSFALG00000004656)	ENSFALG00000004633	STRADA (ENSFALG00000004644)	MAP3K3 (ENSFALG00000004608)	DCAF7 (ENSFALG00000004584)	KCNH6 (ENSFALG00000004555)	ENSFALG00000004540	CYB561 (ENSFALG00000004533)	TANC2 (ENSFALG00000004525)	PDK2 (ENSFALG00000023655) #20	ITGA3 (ENSFALG00000027559) #21	DLX3 (ENSFALG00000005185) #22	ENSFALG00000027591	KAT7 (ENSFALG00000005202) #25	SLC35B1 (ENSFALG00000007148) #27	SPOP (ENSFALG00000007146) ##28	NGFR (ENSFALG00000006987) #30	ENSFALG00000026685	ENSFALG00000028717	ENSFALG00000025180	PHB1 (ENSFALG00000006992) #31	ZNF652 (ENSFALG00000007003) #32	PHOSPHO1 (ENSFALG00000014803) #33	ENSFALG00000011344	ENSFALG00000025055 #34	ENSFALG00000011366	ENSFALG00000025620
Galloanserae	ANCESTRAL SPECIES	23	ENSGT00940000157423	ENSGT00940000161141.e	ENSGT00940000158253	ENSGT00940000160773	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Anatidae	ANCESTRAL SPECIES	43								ENSGT00940000155348.B	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT00960000189470.a	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000163612	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Pink-footed goose	MODERN SPECIES	200							ENSABRG00000013438	ENSABRG00000013416	ENSABRG00000013413	COL1A1 (ENSABRG00000013387) #15	SGCA (ENSABRG00000013372) #16	PPP1R9B (ENSABRG00000013357) #18	SAMD14 (ENSABRG00000013352) #19	ENSABRG00000013344	ITGA3 (ENSABRG00000013311) #21	DLX3 (ENSABRG00000013302) #22	ENSABRG00000013294	KAT7 (ENSABRG00000013283) #25	FAM117A (ENSABRG00000013279) #26	SLC35B1 (ENSABRG00000013277) #27	SPOP (ENSABRG00000013269) #28	NXPH3 (ENSABRG00000013267) #29	NGFR (ENSABRG00000013265) #30	ENSABRG00000013255	MPP3 (ENSABRG00000013251)	CFAP97D1 (ENSABRG00000013238)	ENSABRG00000013233	DUSP3 (ENSABRG00000013228)	SOST (ENSABRG00000013223)	MEOX1 (ENSABRG00000013215)	ETV4 (ENSABRG00000013199)
Duck	MODERN SPECIES	1570																DLX3 (ENSAPLG00000017667) #22
Phasianidae	ANCESTRAL SPECIES	21	ENSGT00940000161141.f.a	ENSGT00940000158253	ENSGT00940000160773	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT01070000257226	ENSGT00950000185319	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000169006	ENSGT00940000154628.C	ENSGT00940000157325.`b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b
Japanese quail	MODERN SPECIES	19	ATXN7L3 (ENSCJPG00005019309)	ASB16 (ENSCJPG00005019310)	G6PC3 (ENSCJPG00005019312)	LSM12 (ENSCJPG00005019313)	TMEM101 (ENSCJPG00005019314)	ENSCJPG00005019315	ENSCJPG00005019316	ENSCJPG00005019317	ENSCJPG00005019318	ENSCJPG00005019319	SGCA (ENSCJPG00005019320) #16	PPP1R9B (ENSCJPG00005019321) #18	SAMD14 (ENSCJPG00005019322) #19	PDK2 (ENSCJPG00005019323) #20	ITGA3 (ENSCJPG00005019324) #21	DLX3 (ENSCJPG00005019325) #22	ENSCJPG00005019327	KAT7 (ENSCJPG00005019328) #25	FAM117A (ENSCJPG00005019329) #26	SLC35B1 (ENSCJPG00005019330) #27	SPOP (ENSCJPG00005019331) #28	NXPH3 (ENSCJPG00005019333) #29	NGFR (ENSCJPG00005019335) #30	ENSCJPG00005019336	MPP3 (ENSCJPG00005019337)	CFAP97D1 (ENSCJPG00005019338)	ENSCJPG00005019339	ENSCJPG00005019340	SOST (ENSCJPG00005019341)	MEOX1 (ENSCJPG00005019342)	ETV4 (ENSCJPG00005019343)
Phasianidae_b	ANCESTRAL SPECIES	21	ENSGT00940000158922	ENSGT00940000157423	ENSGT00940000161141.f.a	ENSGT00950000183150.b	ENSGT00390000006956	ENSGT00390000011938	ENSGT01070000257226	ENSGT00950000185319	ENSGT00940000163871.d	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01080000257365.b.a.a.b.b	ENSGT00940000157190	ENSGT00390000018148	ENSGT00940000157325.`b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142
Turkey	MODERN SPECIES	817																ENSMGAG00000019822 #22
Chicken	MODERN SPECIES	19	UBTF (ENSGALG00010024910)	ENSGALG00010024923	G6PC3 (ENSGALG00010024934)	LSM12 (ENSGALG00010024961)	TMEM101 (ENSGALG00010024968)	ENSGALG00010024972	PPY (ENSGALG00010024981)	ENSGALG00010025006	COL1A1 (ENSGALG00010025092) #15	ENSGALG00010026410	SGCA (ENSGALG00010025247) #16	PPP1R9B (ENSGALG00010025252) #18	SAMD14 (ENSGALG00010025263) #19	PDK2 (ENSGALG00010025274) #20	ITGA3 (ENSGALG00010025286) #21	DLX3 (ENSGALG00010026116) #22	Dlx4 (ENSGALG00010021149)	KAT7 (ENSGALG00010024189) #25	FAM117A (ENSGALG00010026827) #26	SLC35B1 (ENSGALG00010024199) #27	SPOP (ENSGALG00010024203) #28	NXPH3 (ENSGALG00010024210) #29	NGFR (ENSGALG00010024218) #30	ENSGALG00010024223	MPP3 (ENSGALG00010024243)	C27H17ORF105 (ENSGALG00010024255)	RAB18L (ENSGALG00010024270)	DUSP3 (ENSGALG00010024280)	SOST (ENSGALG00010024290)	MEOX1 (ENSGALG00010024300)	ETV4 (ENSGALG00010024333)
Australian saltwater crocodile	MODERN SPECIES	60	CCDC47 (ENSCPRG00005008240)	DDX42 (ENSCPRG00005008233)	ENSCPRG00005008199	ENSCPRG00005008193	CDC27 (ENSCPRG00005008177)	KANSL1 (ENSCPRG00005008121)	MAPT (ENSCPRG00005008071)	ENSCPRG00005008032	RUNDC3A (ENSCPRG00005008019)	ENSCPRG00005008015	SGCA (ENSCPRG00005008006) #16	PPP1R9B (ENSCPRG00005007993) #18	SAMD14 (ENSCPRG00005007960) #19	PDK2 (ENSCPRG00005007935) #20	ITGA3 (ENSCPRG00005007894) #21	DLX3 (ENSCPRG00005007874) #22	ENSCPRG00005007871	KAT7 (ENSCPRG00005007477) #25	FAM117A (ENSCPRG00005007435) #26	SLC35B1 (ENSCPRG00005007405) #27	SPOP (ENSCPRG00005007390) #28	NXPH3 (ENSCPRG00005007387) #29	NGFR (ENSCPRG00005007361) #30	PHB1 (ENSCPRG00005007358) #31	ZNF652 (ENSCPRG00005007345) #32	PHOSPHO1 (ENSCPRG00005007340) #33	GNGT2 (ENSCPRG00005007334) #35	ABI3 (ENSCPRG00005007322) #34	IGF2BP1 (ENSCPRG00005007311)	GIP (ENSCPRG00005007298)	SNF8 (ENSCPRG00005007296)
Cryptodira	ANCESTRAL SPECIES	23	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Chinese turtle	MODERN SPECIES	873													PDK2 (ENSPSIG00000003745) #20	ENSPSIG00000001779	ITGA3 (ENSPSIG00000003793) #21	DLX3 (ENSPSIG00000003843) #22	ENSPSIG00000003893	KAT7 (ENSPSIG00000003897) #25	FAM117A (ENSPSIG00000004190) #26	SLC35B1 (ENSPSIG00000004219) #27	SPOP (ENSPSIG00000004309) #28	NXPH3 (ENSPSIG00000001781) #29	NGFR (ENSPSIG00000004515) #30	PHB1 (ENSPSIG00000004526) #31	ZNF652 (ENSPSIG00000004682) #32	PHOSPHO1 (ENSPSIG00000004701) #33	ABI3 (ENSPSIG00000004779) #34	GNGT2 (ENSPSIG00000004780) #35	B4GALNT2 (ENSPSIG00000004798) #36	IGF2BP1 (ENSPSIG00000005175)	ENSPSIG00000005451
Testudinoidea	ANCESTRAL SPECIES	19	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b #36	ENSGT00940000160427	ENSGT00390000005121
Testudinidae	ANCESTRAL SPECIES	24	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00390000006679.b.i #36	ENSGT00390000006679.b.j #36	ENSGT00940000160427
Abingdon island giant tortoise	MODERN SPECIES	1609	TMEM101 (ENSCABG00000004634)	NAGS (ENSCABG00000004628)	ENSCABG00000004625	ENSCABG00000004623	MPP2 (ENSCABG00000004616)	ENSCABG00000004336	COL1A1 (ENSCABG00000004322) #15	ENSCABG00000004321	ENSCABG00000004319	SGCA (ENSCABG00000003975) #16	PPP1R9B (ENSCABG00000003949) #18	SAMD14 (ENSCABG00000003847) #19	PDK2 (ENSCABG00000003835) #20	ENSCABG00000003830	ITGA3 (ENSCABG00000003805) #21	DLX3 (ENSCABG00000003791) #22	ENSCABG00000003787	KAT7 (ENSCABG00000003186) #25	FAM117A (ENSCABG00000003167) #26	SLC35B1 (ENSCABG00000003156) #27	SPOP (ENSCABG00000003146) #28	NXPH3 (ENSCABG00000003144) #29	NGFR (ENSCABG00000003086) #30	PHB1 (ENSCABG00000003081) #31	ZNF652 (ENSCABG00000003079) #32	PHOSPHO1 (ENSCABG00000003074) #33	ENSCABG00000003068 #34	GNGT2 (ENSCABG00000003055) #35	ENSCABG00000002867 #36	ENSCABG00000002782 #36	IGF2BP1 (ENSCABG00000002771)
Goode s thornscrub tortoise	MODERN SPECIES	15	HDAC5 (ENSGEVG00005014411)	G6PC3 (ENSGEVG00005014208)	LSM12 (ENSGEVG00005014182)	ENSGEVG00005014090	TMEM101 (ENSGEVG00005014051)	NAGS (ENSGEVG00005013917)	PYY (ENSGEVG00005013834)	ENSGEVG00005013767	MPP2 (ENSGEVG00005013554)	ENSGEVG00005012852	SGCA (ENSGEVG00005012770) #16	PPP1R9B (ENSGEVG00005012736) #18	SAMD14 (ENSGEVG00005012502) #19	PDK2 (ENSGEVG00005012455) #20	ITGA3 (ENSGEVG00005012388) #21	DLX3 (ENSGEVG00005012297) #22	ENSGEVG00005012254	KAT7 (ENSGEVG00005012214) #25	FAM117A (ENSGEVG00005012132) #26	SLC35B1 (ENSGEVG00005012102) #27	SPOP (ENSGEVG00005012058) #28	NXPH3 (ENSGEVG00005012026) #29	NGFR (ENSGEVG00005011998) #30	ENSGEVG00005011943	PHB1 (ENSGEVG00005011915) #31	ZNF652 (ENSGEVG00005018438) #32	PHOSPHO1 (ENSGEVG00005018428) #33	GNGT2 (ENSGEVG00005018400) #35	ABI3 (ENSGEVG00005018348) #34	ENSGEVG00005018310 #36	ENSGEVG00005018261 #36
Emydidae	ANCESTRAL SPECIES	26	ENSGT00390000006956	ENSGT00940000155311.A	ENSGT00390000011938	ENSGT00390000005602	ENSGT00940000160643	ENSGT00950000185319	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00730000113862	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00950000183046.a.b #26	ENSGT00940000157900 #27	ENSGT00940000154376.b #28	ENSGT00950000182883.a.a #29	ENSGT00730000110974 #30	ENSGT01100000264939	ENSGT00950000183070.a.b #31	ENSGT00940000157416 #32	ENSGT00390000007741.a #33	ENSGT00940000161380 #34	ENSGT01100000263525.b.a #35	ENSGT00940000160427	ENSGT00390000005121
Three-toed box turtle	MODERN SPECIES	91	G6PC3 (ENSTMTG00000010425)	LSM12 (ENSTMTG00000010413)	ENSTMTG00000010384	PYY (ENSTMTG00000010361)	MPP2 (ENSTMTG00000010299)	ENSTMTG00000010275	COL1A1 (ENSTMTG00000008995) #15	ENSTMTG00000008884	ENSTMTG00000008848	SGCA (ENSTMTG00000008474) #16	PPP1R9B (ENSTMTG00000008419) #18	ENSTMTG00000008404	SAMD14 (ENSTMTG00000008275) #19	PDK2 (ENSTMTG00000008243) #20	ITGA3 (ENSTMTG00000008194) #21	DLX3 (ENSTMTG00000008162) #22	ENSTMTG00000008151	KAT7 (ENSTMTG00000008127) #25	FAM117A (ENSTMTG00000008108) #26	SLC35B1 (ENSTMTG00000008088) #27	SPOP (ENSTMTG00000008058) #28	NXPH3 (ENSTMTG00000008050) #29	NGFR (ENSTMTG00000008039) #30	ENSTMTG00000008034	PHB1 (ENSTMTG00000008017) #31	ZNF652 (ENSTMTG00000008012) #32	PHOSPHO1 (ENSTMTG00000008002) #33	ABI3 (ENSTMTG00000007978) #34	GNGT2 (ENSTMTG00000007963) #35	IGF2BP1 (ENSTMTG00000007859)	GIP (ENSTMTG00000007840)
painted turtle	MODERN SPECIES	2394	TMEM101 (ENSCPBG00000027107)	NAGS (ENSCPBG00000027108)	PYY (ENSCPBG00000027110)	ENSCPBG00000027111	MPP2 (ENSCPBG00000027112)	ENSCPBG00000027114	COL1A1 (ENSCPBG00000027141) #15	ENSCPBG00000027233	SGCA (ENSCPBG00000027236) #16	ENSCPBG00000027239	PPP1R9B (ENSCPBG00000027241) #18	ENSCPBG00000027244	SAMD14 (ENSCPBG00000027249) #19	PDK2 (ENSCPBG00000027259) #20	ITGA3 (ENSCPBG00000027263) #21	DLX3 (ENSCPBG00000027266) #22	ENSCPBG00000027268	KAT7 (ENSCPBG00000027273) #25	FAM117A (ENSCPBG00000027279) #26	SLC35B1 (ENSCPBG00000027281) #27	SPOP (ENSCPBG00000027284) #28	NXPH3 (ENSCPBG00000027288) #29	NGFR (ENSCPBG00000027292) #30	ENSCPBG00000027294	PHB1 (ENSCPBG00000027296) #31	ZNF652 (ENSCPBG00000027302) #32	PHOSPHO1 (ENSCPBG00000027305) #33	ABI3 (ENSCPBG00000027308) #34	GNGT2 (ENSCPBG00000027311) #35	IGF2BP1 (ENSCPBG00000027315)	GIP (ENSCPBG00000027322)
Anura	ANCESTRAL SPECIES	506															ENSGT00940000157746 #21	ENSGT00940000158951 #22
Leishan spiny toad	MODERN SPECIES	3	HROB (ENSLLEG00000026936)	HDAC5 (ENSLLEG00000027006)	ENSLLEG00000027143	G6PC3 (ENSLLEG00000027161)	LSM12 (ENSLLEG00000027205)	ENSLLEG00000027304	ENSLLEG00000027472 #16	COL1A1 (ENSLLEG00000017276) #15	ENSLLEG00000017909	MPP2 (ENSLLEG00000018006)	ENSLLEG00000018195	ENSLLEG00000018325	NAGS (ENSLLEG00000018403)	TMEM101 (ENSLLEG00000018483)	ITGA3 (ENSLLEG00000018562) #21	DLX3 (ENSLLEG00000019199) #22	ENSLLEG00000019235	ENSLLEG00000019262	ENSLLEG00000019273	KAT7 (ENSLLEG00000019312) #25	SLC35B1 (ENSLLEG00000020066) #27	SPOP (ENSLLEG00000020342) #28	NXPH3 (ENSLLEG00000020801) #29	NGFR (ENSLLEG00000020843) #30	ENSLLEG00000020907	ENSLLEG00000020974	PHB1 (ENSLLEG00000020990) #31	ZNF652 (ENSLLEG00000021148) #32	TMEM98 (ENSLLEG00000021348)	ZNF281 (ENSLLEG00000021456)	ENSLLEG00000021561
Frog	MODERN SPECIES	1	mettl2b (ENSXETG00000007856)	tlk2 (ENSXETG00000007854)	XB996620 [provisional:c1orf198] (ENSXETG00000007853)	tfb1m (ENSXETG00000007852)	crtap (ENSXETG00000007851)	slc13a3 (ENSXETG00000007850)	slc25a39 (ENSXETG00000011613)	grn (ENSXETG00000011614)	fam171a2 (ENSXETG00000011615)	ENSXETG00000049140	itga2b.1 (ENSXETG00000032329)	gpatch8 (ENSXETG00000008843)	fzd2 (ENSXETG00000008840)	MEIOC (ENSXETG00000008838)	itga3 (ENSXETG00000021920) #21	dlx3 (ENSXETG00000021919) #22	dlx4 (ENSXETG00000039707)	ENSXETG00000042209	kat7 (ENSXETG00000021908) #25	slc35b1 (ENSXETG00000015126) #27	spop (ENSXETG00000027799) #28	nxph3 (ENSXETG00000018631) #29	ngfr (ENSXETG00000046328) #30	phb (ENSXETG00000027802) #31	ZNF652 (ENSXETG00000044174) #32	ENSXETG00000042234	phospho1 (ENSXETG00000033588) #33	abi3 (ENSXETG00000031476)	gngt2 (ENSXETG00000033724) #35	b4galnt2 (ENSXETG00000033376) #36	ENSXETG00000031036
Coelacanth	MODERN SPECIES	870																DLX3 (ENSLACG00000014443) #22	dlx4b (ENSLACG00000014169)	KAT7 (ENSLACG00000010542) #25	ENSLACG00000010204	FAM117A (ENSLACG00000009773) #26	SLC35B1 (ENSLACG00000009229) #27	SPOP (ENSLACG00000007328) #28	ENSLACG00000004489	NGFR (ENSLACG00000001167) #30
Actinopterygii	ANCESTRAL SPECIES	4	ENSGT00390000005602	ENSGT00390000011938	ENSGT00940000155311.A	ENSGT00390000006956	ENSGT00950000183150.b	ENSGT00940000160534	ENSGT00940000160643	ENSGT00940000155348.B	ENSGT00940000163871	ENSGT00940000156584 #15	ENSGT00390000005672.a.a #16	ENSGT00940000158833 #18	ENSGT00940000160279 #19	ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00940000157744 #25	ENSGT00470000042293.a.b.a.b	ENSGT00470000042293.a.b.a.a	ENSGT00940000166739	ENSGT00470000042293.a.b.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000164777	ENSGT00950000182950.C	ENSGT00530000063688.b	ENSGT00940000155494.j	ENSGT01030000234570.d.b.a.b.b.a	ENSGT00940000159417	ENSGT00940000154363.B
Neopterygii	ANCESTRAL SPECIES	47												ENSGT01030000234646.B.a.a.a.a #20	ENSGT00940000153704.B	ENSGT00940000166447	ENSGT00940000157746 #21	ENSGT00940000158951 #22	ENSGT00940000165079	ENSGT00650000094974	ENSGT00940000157744 #25	ENSGT00470000042293.a.b.a.b	ENSGT00470000042293.a.b.a.a	ENSGT00940000166739	ENSGT00470000042293.a.b.b	ENSGT00950000183184.b	ENSGT00940000160724	ENSGT00940000160612	ENSGT00940000158410.g	ENSGT00950000182950.C	ENSGT00530000063688.b	ENSGT00940000155494.j	ENSGT01030000234570.d.b.a.b.b.a
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	41	ENSGT00390000005672.a.a #16	ENSGT00940000160279 #19	ENSGT00390000016438	ENSGT00390000017328	ENSGT00940000153653.a.a	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00390000018386	ENSGT00940000159914	ENSGT00940000160643	ENSGT00940000155348.B.d	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079	ENSGT00650000094974	ENSGT00940000157744 #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00950000183150.a.a.a.c	ENSGT00950000183150.a.a.b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00940000155510	ENSGT00940000157917.a.b	ENSGT00950000183178.b.b.b	ENSGT00940000157854
Clupeocephala	ANCESTRAL SPECIES	43	ENSGT00390000017328.a.b	ENSGT00390000017328.a.a	ENSGT00940000153653.a.a	ENSGT00940000154360.B	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00950000183150.a.a.a.c	ENSGT00950000183150.a.a.b	ENSGT00950000183098.a.b	ENSGT00390000016335.h	ENSGT00940000166248.a	ENSGT00940000161341.a.a	ENSGT00940000162682.B.a	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00940000155510
Otomorpha	ANCESTRAL SPECIES	319		ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000157037.b.b.a	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241
Clupeiformes	ANCESTRAL SPECIES	122	ENSGT00940000155830.e.a	ENSGT00940000154741.d	ENSGT00510000047961.c	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000157037.b.b.a	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241
Atlantic herring	MODERN SPECIES	15	myof (ENSCHAG00000012693)	cep55l (ENSCHAG00000014812)	pde6c (ENSCHAG00000014866)	fra10ac1 (ENSCHAG00000017469)	lgi1b (ENSCHAG00000017567)	SLC35G1 (ENSCHAG00000017863)	plce1 (ENSCHAG00000017870)	noc3l (ENSCHAG00000017878)	ENSCHAG00000018201	ENSCHAG00000019984	TNKS2 (ENSCHAG00000020022)	ENSCHAG00000020994	ENSCHAG00000021004	ENSCHAG00000021037	itga3b (ENSCHAG00000021380) #21	dlx3b (ENSCHAG00000021429) #22	dlx4b (ENSCHAG00000021459)	ENSCHAG00000021524	kat7b (ENSCHAG00000021539) #25	ptges3l (ENSCHAG00000022180)	g6pc1a.1 (ENSCHAG00000022186)	g6pc1a.2 (ENSCHAG00000022194)	aarsd1 (ENSCHAG00000022226)	WIPI1 (ENSCHAG00000022532)	prkar1ab (ENSCHAG00000022558)	fam20a (ENSCHAG00000022703)	LRRC45 (ENSCHAG00000022888)	rac3b (ENSCHAG00000022908)	dcxr (ENSCHAG00000022953)	rfng (ENSCHAG00000022977)	GPS1 (ENSCHAG00000023003)
Denticle herring	MODERN SPECIES	11	RND2 (ENSDCDG00000001607)	ENSDCDG00000001643	PHOSPHO1 (ENSDCDG00000001657) #33	ENSDCDG00000001658	VAT1 (ENSDCDG00000001660)	ENSDCDG00000001661	PHOSPHO1 (ENSDCDG00000001662) #33	ENSDCDG00000001663	ENSDCDG00000001664	ADAM11 (ENSDCDG00000001670)	P3H4 (ENSDCDG00000001731)	fkbp10b (ENSDCDG00000001733)	ENSDCDG00000001738	ENSDCDG00000001753	itga3b (ENSDCDG00000002157) #21	dlx3b (ENSDCDG00000002164) #22	dlx4b (ENSDCDG00000002167)	ENSDCDG00000002168	kat7b (ENSDCDG00000002177) #25	ptges3l (ENSDCDG00000002205)	g6pc1a.1 (ENSDCDG00000002209)	g6pc1a.2 (ENSDCDG00000002231)	aarsd1 (ENSDCDG00000002244)	adkb (ENSDCDG00000002266)	KAT6B (ENSDCDG00000002290)	ENSDCDG00000002294	DUSP13 (ENSDCDG00000002297)	ENSDCDG00000002298	SAMD8 (ENSDCDG00000000134)	VDAC2 (ENSDCDG00000000160)	COMTD1 (ENSDCDG00000000256)
Otophysi	ANCESTRAL SPECIES		ENSGT00940000161103.b	ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000157037.b.b.a	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241	ENSGT00390000018409.h	ENSGT00940000158306	ENSGT00390000015792	ENSGT00940000158678	ENSGT00940000165723.a	ENSGT00940000156675.d	ENSGT00940000155309.p	ENSGT00940000155109.a.b
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000159632	ENSGT00940000161103.b	ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e.d #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241	ENSGT00390000018409.h	ENSGT00940000158306	ENSGT00390000015792	ENSGT00940000158678	ENSGT00940000165723.a	ENSGT00940000156675.d	ENSGT00940000155309.p	ENSGT00940000155109.a.b
Channel catfish	MODERN SPECIES	4	ENSIPUG00000011501	CEP55 (ENSIPUG00000011437)	rbp4a (ENSIPUG00000011463)	pde6c (ENSIPUG00000011394)	Fra10ac1 (ENSIPUG00000011338)	lgi1b (ENSIPUG00000011310)	SLC35G1 (ENSIPUG00000011302)	plce1 (ENSIPUG00000011245)	noc3l (ENSIPUG00000011208)	TBC1D12 (ENSIPUG00000011161)	ENSIPUG00000011132	Tnks2 (ENSIPUG00000011046)	ENSIPUG00000011036	ENSIPUG00000010977	itga3b (ENSIPUG00000010851) #21	dlx3 (ENSIPUG00000010823) #22	dlx4b (ENSIPUG00000010804)	ENSIPUG00000010796	kat7 (ENSIPUG00000010773) #25	ptges3l (ENSIPUG00000010758)	g6pc (ENSIPUG00000010733)	g6pc1a.2 (ENSIPUG00000010702)	aarsd1 (ENSIPUG00000010672)	sgms1 (ENSIPUG00000010653)	ENSIPUG00000010643	IFIT5 (ENSIPUG00000010636)	asah2 (ENSIPUG00000010420)	a1cf (ENSIPUG00000010367)	ENSIPUG00000010348	prkg1 (ENSIPUG00000010199)	dkk1 (ENSIPUG00000010173)
Characiphysae_b	ANCESTRAL SPECIES	108	ENSGT00940000159632	ENSGT00940000161103.b	ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e.d #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241	ENSGT00390000018409.h	ENSGT00940000158306	ENSGT00390000015792	ENSGT00940000158678	ENSGT00940000165723.a	ENSGT00940000156675.d	ENSGT00940000155309.p	ENSGT00940000155109.a.b
Characoidei	ANCESTRAL SPECIES	104			ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e.d #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241	ENSGT00390000018409.h.b	ENSGT00940000158306	ENSGT00390000015792	ENSGT00940000158678	ENSGT00940000165723.a	ENSGT00940000179608	ENSGT00940000156675.d	ENSGT00940000155309.p
Mexicana tetra	MODERN SPECIES	19	kif22 (ENSAMXG00000004917)	cep55l (ENSAMXG00000038582)	rbp4 (ENSAMXG00000032567)	pde6c (ENSAMXG00000004926)	fra10ac1 (ENSAMXG00000004929)	lgi1b (ENSAMXG00000004936)	SLC35G1 (ENSAMXG00000033646)	plce1 (ENSAMXG00000004946)	noc3l (ENSAMXG00000004967)	TBC1D12 (ENSAMXG00000004972)	ENSAMXG00000036689	TNKS2 (ENSAMXG00000004975)	ENSAMXG00000041589	ENSAMXG00000004983	itga3b (ENSAMXG00000033569) #21	dlx3b (ENSAMXG00000029370) #22	dlx4b (ENSAMXG00000042142)	ENSAMXG00000034848	kat7b (ENSAMXG00000038714) #25	ptges3l (ENSAMXG00000031922)	g6pc1a.1 (ENSAMXG00000033979)	g6pc1a.2 (ENSAMXG00000018240)	aarsd1 (ENSAMXG00000031615)	sgms1b (ENSAMXG00000031502)	asah2 (ENSAMXG00000018196)	A1CF (ENSAMXG00000018180)	PRKG1 (ENSAMXG00000034003)	dkk1b (ENSAMXG00000018166)	ENSAMXG00000043620	ENSAMXG00000030918	pcdh15b (ENSAMXG00000018085)
Red-bellied piranha	MODERN SPECIES	754												ENSPNAG00000002625	ENSPNAG00000006590	ENSPNAG00000002614	itga3b (ENSPNAG00000013131) #21	dlx3b (ENSPNAG00000002553) #22
Electric eel	MODERN SPECIES	403		ENSEEEG00000018235	cep55l (ENSEEEG00000018237)	rbp4 (ENSEEEG00000018239)	pde6c (ENSEEEG00000018244)	fra10ac1 (ENSEEEG00000018245)	lgi1b (ENSEEEG00000018250)	SLC35G1 (ENSEEEG00000018253)	plce1 (ENSEEEG00000018256)	noc3l (ENSEEEG00000018261)	ENSEEEG00000018334	TNKS2 (ENSEEEG00000018394)	ENSEEEG00000018396	ENSEEEG00000018398	itga3b (ENSEEEG00000018400) #21	dlx3b (ENSEEEG00000018403) #22	dlx4b (ENSEEEG00000018404)	ENSEEEG00000018405	ENSEEEG00000018406	mettl8 (ENSEEEG00000018407)	ENSEEEG00000018409
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00940000161103.b	ENSGT00510000047961.c	ENSGT00510000047107.A	ENSGT00940000157825.a	ENSGT00390000017833	ENSGT00940000164645.b	ENSGT00940000153249.a	ENSGT00940000157356	ENSGT00390000008540	ENSGT00940000156410.g	ENSGT00940000157037.b.b.a	ENSGT00940000159911	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b	ENSGT00950000183150.a.a.a.c	ENSGT00940000156241	ENSGT00390000015792	ENSGT00940000158678	ENSGT00940000165723.a	ENSGT00940000156675.d	ENSGT00940000155309.p	ENSGT00940000155109.a.b	ENSGT00440000039001	ENSGT00390000013948.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000161103.b.a.a	ENSGT00510000047961.c	ENSGT00510000047107.A.g	ENSGT00940000157825.a.b	ENSGT00390000017833.c	ENSGT00940000164645.b.b	ENSGT00940000153249.a.f	ENSGT00940000157356.c	ENSGT00390000008540	ENSGT00940000156410.g.f	ENSGT00940000157037.b.b.a.i	ENSGT00940000159911.f	ENSGT00940000167052	ENSGT00940000163600.g	ENSGT00940000157746.e.a #21	ENSGT00940000158951.e.a #22	ENSGT00940000165079.a.c	ENSGT00650000094974.b.b	ENSGT00940000157744.d.c #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b.c	ENSGT00950000183150.a.a.a.c.e
Goldfish	MODERN SPECIES	3	ENSCARG00000031290	cep55l (ENSCARG00000031280)	rbp4 (ENSCARG00000031250)	pde6c (ENSCARG00000030305)	fra10ac1 (ENSCARG00000030181)	lgi1b (ENSCARG00000030105)	SLC35G1 (ENSCARG00000030093)	plce1 (ENSCARG00000029578)	noc3l (ENSCARG00000029324)	ENSCARG00000027171	ENSCARG00000031596	TNKS2 (ENSCARG00000030628)	ENSCARG00000030531	ENSCARG00000028817	itga3b (ENSCARG00000028734) #21	dlx3b (ENSCARG00000028710) #22	dlx4b (ENSCARG00000028703)	ENSCARG00000028700	ENSCARG00000028697	kat7b (ENSCARG00000028390) #25	ptges3l (ENSCARG00000028322)	g6pc1a.1 (ENSCARG00000028298)	g6pc1a.2 (ENSCARG00000028279)	sgms1b (ENSCARG00000028264)	A1CF (ENSCARG00000028246)	PRKG1 (ENSCARG00000028170)	dkk1b (ENSCARG00000028157)	ENSCARG00000028155	pcdh15b (ENSCARG00000027031)	ipmkb (ENSCARG00000026884)	UBE2D1 (ENSCARG00000026837)
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00940000161103.b.a.a	ENSGT00510000047961.c.g	ENSGT00510000047107.A.g	ENSGT00940000157825.a.b	ENSGT00390000017833.c	ENSGT00940000164645.b.b	ENSGT00940000153249.a.f	ENSGT00940000157356.c	ENSGT00390000008540	ENSGT00940000156410.g.f	ENSGT00940000157037.b.b.a.i	ENSGT00940000159911.f	ENSGT00940000167052	ENSGT00940000163600.g	ENSGT00940000157746.e.a #21	ENSGT00940000158951.e.a #22	ENSGT00940000165079.a.c	ENSGT00650000094974.b.b	ENSGT00940000157744.d.c #25	ENSGT00940000163448	ENSGT00950000183150.a.a.b.c	ENSGT00950000183150.a.a.a.c.e
Common carp reference	MODERN SPECIES	25	ENSCCRG00000016807	cep55l (ENSCCRG00000016817)	rbp4 (ENSCCRG00000016820)	pde6c (ENSCCRG00000016889)	fra10ac1 (ENSCCRG00000019581)	lgi1b (ENSCCRG00000069189)	SLC35G1 (ENSCCRG00000068866)	plce1 (ENSCCRG00000038867)	noc3l (ENSCCRG00000037365)	ENSCCRG00000033725	ENSCCRG00000033385	ENSCCRG00000015822	ENSCCRG00000070535	ENSCCRG00000032217	itga3b (ENSCCRG00000039651) #21	dlx3b (ENSCCRG00000003924) #22	dlx4b (ENSCCRG00000066609)	ENSCCRG00000072733	kat7b (ENSCCRG00000036476) #25	ptges3l (ENSCCRG00000002170)	ENSCCRG00000064700	g6pc1a.2 (ENSCCRG00000081233)	aarsd1 (ENSCCRG00000053368)	sgms1b (ENSCCRG00000033007)	asah2 (ENSCCRG00000017346)	ENSCCRG00000017356	ENSCCRG00000062462	ENSCCRG00000053355	ENSCCRG00000074900	dkk1b (ENSCCRG00000070075)	pcdh15b (ENSCCRG00000062792)
Golden-line barbel	MODERN SPECIES	252	ENSSGRG00000033426	ENSSGRG00000033429	cep55l (ENSSGRG00000033431)	rbp4 (ENSSGRG00000033434)	pde6c (ENSSGRG00000033509)	lgi1b (ENSSGRG00000034239)	SLC35G1 (ENSSGRG00000034273)	plce1 (ENSSGRG00000034277)	noc3l (ENSSGRG00000034354)	ENSSGRG00000034615	ENSSGRG00000034699	TNKS2 (ENSSGRG00000034701)	ENSSGRG00000035127	ENSSGRG00000035136	itga3b (ENSSGRG00000035368) #21	dlx3b (ENSSGRG00000035374) #22	dlx4b (ENSSGRG00000035375)	ENSSGRG00000035377	kat7b (ENSSGRG00000035391) #25	ptges3l (ENSSGRG00000035770)	g6pc1a.1 (ENSSGRG00000035772)	aarsd1 (ENSSGRG00000035776)	sgms1b (ENSSGRG00000035789)	asah2 (ENSSGRG00000035790)
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000155111.pb	ENSGT00950000182860.a.a.a.ub.b.b	ENSGT00940000159632.a	ENSGT00940000161103.b.b	ENSGT00510000047107.A.h	ENSGT00940000157825.a.a	ENSGT00390000017833.d	ENSGT00940000164645.b.a	ENSGT00940000153249.a.e	ENSGT00940000157356.d	ENSGT00940000156410.g.e	ENSGT00940000157037.b.b.a.j	ENSGT00940000159911.e	ENSGT00940000163600.h	ENSGT00940000157746.e.b #21	ENSGT00940000158951.e.b #22	ENSGT00940000165079.a.d	ENSGT00650000094974.b.a	ENSGT00940000157744.d.d #25	ENSGT00950000183150.a.a.b.d	ENSGT00950000183150.a.a.a.c.f	ENSGT00940000156241	ENSGT00940000158306.u.b	ENSGT00390000015792.x	ENSGT00940000158678.k	ENSGT00940000158306.u.a	ENSGT00390000015792.w	ENSGT00940000158678.l	ENSGT00940000154704.d.b.d.b.b	ENSGT00940000161319	ENSGT00940000165723.a.b
Goldfish	MODERN SPECIES	30	ENSCARG00000006102	kif22 (ENSCARG00000006072)	ENSCARG00000028423	cep55l (ENSCARG00000028397)	rbp4 (ENSCARG00000028358)	pde6c (ENSCARG00000027159)	fra10ac1 (ENSCARG00000027070)	lgi1b (ENSCARG00000026945)	SLC35G1 (ENSCARG00000026924)	plce1 (ENSCARG00000025883)	ENSCARG00000025438	ENSCARG00000025397	ENSCARG00000025390	ENSCARG00000025355	itga3b (ENSCARG00000025296) #21	dlx3b (ENSCARG00000025233) #22	dlx4b (ENSCARG00000025218)	ENSCARG00000025165	kat7b (ENSCARG00000023431) #25	g6pc1a.1 (ENSCARG00000023314)	g6pc1a.2 (ENSCARG00000023278)	aarsd1 (ENSCARG00000023127)	sgms1b (ENSCARG00000023104)	asah2 (ENSCARG00000022864)	A1CF (ENSCARG00000022824)	PRKG1 (ENSCARG00000022793)	dkk1b (ENSCARG00000022785)	ENSCARG00000022780	pcdh15b (ENSCARG00000022533)	ipmkb (ENSCARG00000022490)	ENSCARG00000022484
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00950000182860.a.a.a.ub.b.b	ENSGT00940000159632.a	ENSGT00940000161103.b.a.b	ENSGT00510000047961.c.h	ENSGT00510000047107.A.h	ENSGT00940000157825.a.a	ENSGT00390000017833.d	ENSGT00940000164645.b.a	ENSGT00940000153249.a.e	ENSGT00940000157356.d	ENSGT00940000156410.g.e	ENSGT00940000157037.b.b.a.j	ENSGT00940000159911.e	ENSGT00940000163600.h	ENSGT00940000157746.e.b #21	ENSGT00940000158951.e.b #22	ENSGT00940000165079.a.d	ENSGT00650000094974.b.a	ENSGT00940000157744.d.d #25	ENSGT00950000183150.a.a.b.d	ENSGT00950000183150.a.a.a.c.f	ENSGT00940000156241	ENSGT00940000158306.u.a	ENSGT00390000015792.w	ENSGT00940000158678.l	ENSGT00940000158306.u.b	ENSGT00390000015792.x	ENSGT00940000158678.k	ENSGT00940000154704.d.b.d.b.b	ENSGT00940000161319	ENSGT00940000165723.a.b
Common carp reference	MODERN SPECIES	44	cep55l (ENSCCRG00000035117)	rbp4 (ENSCCRG00000035121)	pde6c (ENSCCRG00000035362)	fra10ac1 (ENSCCRG00000019846)	lgi1b (ENSCCRG00000064312)	plce1 (ENSCCRG00000039636)	ENSCCRG00000028425	ENSCCRG00000079411	ENSCCRG00000033395	ENSCCRG00000082904	ENSCCRG00000075036	ENSCCRG00000077586	ENSCCRG00000007722	ENSCCRG00000033437	itga3b (ENSCCRG00000007713) #21	dlx3b (ENSCCRG00000031645) #22	dlx4b (ENSCCRG00000031648)	ENSCCRG00000036450	kat7b (ENSCCRG00000002180) #25	g6pc1a.1 (ENSCCRG00000065767)	g6pc1a.2 (ENSCCRG00000037979)	aarsd1 (ENSCCRG00000047672)	sgms1b (ENSCCRG00000038187)	asah2 (ENSCCRG00000038197)	ENSCCRG00000007736	ENSCCRG00000050067	dkk1b (ENSCCRG00000050071)	pcdh15b (ENSCCRG00000073582)	ipmkb (ENSCCRG00000050608)	ube2d1b (ENSCCRG00000049906)	tfam (ENSCCRG00000049909)
Golden-line barbel	MODERN SPECIES	598	kif22 (ENSSGRG00000045322)	ENSSGRG00000045320	cep55l (ENSSGRG00000045319)	rbp4 (ENSSGRG00000045300)	pde6c (ENSSGRG00000043399)	fra10ac1 (ENSSGRG00000043370)	lgi1b (ENSSGRG00000043369)	ENSSGRG00000043367	SLC35G1 (ENSSGRG00000043366)	plce1 (ENSSGRG00000043325)	ENSSGRG00000042896	ENSSGRG00000042894	ENSSGRG00000042893	ENSSGRG00000042388	itga3b (ENSSGRG00000042378) #21	dlx3b (ENSSGRG00000042377) #22	dlx4b (ENSSGRG00000042376)	ENSSGRG00000042375	kat7b (ENSSGRG00000042374) #25	g6pc1a.1 (ENSSGRG00000042340)	g6pc1a.2 (ENSSGRG00000042338)	ENSSGRG00000042337	sgms1b (ENSSGRG00000042336)	asah2 (ENSSGRG00000042335)	A1CF (ENSSGRG00000042318)	ENSSGRG00000041784	DKK1 (ENSSGRG00000041758)
Zebrafish	MODERN SPECIES	3	kif22 (ENSDARG00000102624)	ENSDARG00000103588	cep55l (ENSDARG00000102349)	rbp4 (ENSDARG00000101199)	pde6c (ENSDARG00000100397)	fra10ac1 (ENSDARG00000102615)	lgi1b (ENSDARG00000058421)	SLC35G1 (ENSDARG00000063268)	plce1 (ENSDARG00000087921)	noc3l (ENSDARG00000002487)	ENSDARG00000073771	ENSDARG00000040765	ENSDARG00000063283	ENSDARG00000079166	itga3b (ENSDARG00000012824) #21	dlx3b (ENSDARG00000014626) #22	dlx4b (ENSDARG00000071560)	ENSDARG00000112024	ENSDARG00000096645	kat7b (ENSDARG00000031770) #25	ptges3l (ENSDARG00000079462)	g6pc1a.1 (ENSDARG00000031616)	g6pc1a.2 (ENSDARG00000013721)	aarsd1 (ENSDARG00000015747)	sgms1b (ENSDARG00000029621)	asah2 (ENSDARG00000012829)	rltgr (ENSDARG00000096533)	A1CF (ENSDARG00000002968)	PRKG1 (ENSDARG00000031702)	dkk1b (ENSDARG00000045219)	ENSDARG00000071772
Euteleosteomorpha	ANCESTRAL SPECIES	62	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000157744.d #25	ENSGT00940000163448
Acanthomorphata	ANCESTRAL SPECIES	23	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Tiger tail seahorse	MODERN SPECIES	36													ENSHCOG00000013204	ENSHCOG00000013262	itga3b (ENSHCOG00000013338) #21	dlx3b (ENSHCOG00000013351) #22	dlx4b (ENSHCOG00000013408)	ENSHCOG00000013420	kat7b (ENSHCOG00000013451) #25	ptges3l (ENSHCOG00000013463)	aarsd1 (ENSHCOG00000013491)	myof (ENSHCOG00000013589)	fam20a (ENSHCOG00000013622)	prkar1ab (ENSHCOG00000013643)	WIPI1 (ENSHCOG00000013693)	arsg (ENSHCOG00000013709)	slc16a6a (ENSHCOG00000013717)	ENSHCOG00000013725	TEPSIN (ENSHCOG00000013755)	ndufaf8 (ENSHCOG00000013800)	SLC38A10 (ENSHCOG00000013825)
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Fugu	MODERN SPECIES		KATNIP (ENSTRUG00000016359)	dcun1d3 (ENSTRUG00000021398)	ENSTRUG00000020666	med24 (ENSTRUG00000016382)	ENSTRUG00000016396	ENSTRUG00000016397	top2a (ENSTRUG00000016398)	rara (ENSTRUG00000016415)	mki67 (ENSTRUG00000016448)	tut1 (ENSTRUG00000016451)	pyyb (ENSTRUG00000028804)	mpp2b (ENSTRUG00000025876)	ENSTRUG00000016469	ENSTRUG00000016473	itga3b (ENSTRUG00000016519) #21	dlx3b (ENSTRUG00000016555) #22	dlx4b (ENSTRUG00000019698)	ENSTRUG00000024979	kat7b (ENSTRUG00000016561) #25	ptges3l (ENSTRUG00000025335)	myof (ENSTRUG00000016582)	ENSTRUG00000027977	fam20a (ENSTRUG00000016656)	prkar1ab (ENSTRUG00000016660)	WIPI1 (ENSTRUG00000016671)	arsg (ENSTRUG00000016680)	slc16a6a (ENSTRUG00000024041)	AMZ2 (ENSTRUG00000020865)	TEPSIN (ENSTRUG00000016718)	ndufaf8 (ENSTRUG00000023628)	SLC38A10 (ENSTRUG00000016720)
Tetraodon	MODERN SPECIES	13	KATNIP (ENSTNIG00000012842)	dcun1d3 (ENSTNIG00000012843)	lyrm1 (ENSTNIG00000012844)	ENSTNIG00000012845	med24 (ENSTNIG00000012846)	ENSTNIG00000012847	top2a (ENSTNIG00000012848)	GJD3 (ENSTNIG00000012849)	ENSTNIG00000012850	ENSTNIG00000012851	tut1 (ENSTNIG00000012852)	pyyb (ENSTNIG00000001330)	mpp2b (ENSTNIG00000012853)	ENSTNIG00000012854	itga3b (ENSTNIG00000012855) #21	dlx3b (ENSTNIG00000012856) #22	dlx4b (ENSTNIG00000012857)	kat7b (ENSTNIG00000012858) #25	aarsd1 (ENSTNIG00000012859)	myof (ENSTNIG00000012860)	fam20a (ENSTNIG00000012861)	prkar1ab (ENSTNIG00000012862)	WIPI1 (ENSTNIG00000012863)	arsg (ENSTNIG00000012864)	slc16a6a (ENSTNIG00000012865)	AMZ2 (ENSTNIG00000012866)	TEPSIN (ENSTNIG00000001700)	ENSTNIG00000012867	BAHCC1 (ENSTNIG00000012868)	fscn2b (ENSTNIG00000012869)	birc5a (ENSTNIG00000012870)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Ballan wrasse	MODERN SPECIES	299																dlx3b (ENSLBEG00000008303) #22	dlx4b (ENSLBEG00000008333)	ENSLBEG00000008343	kat7b (ENSLBEG00000008362) #25	ptges3l (ENSLBEG00000008420)	aarsd1 (ENSLBEG00000008445)	myof (ENSLBEG00000008538)	fam20a (ENSLBEG00000008730)	prkar1ab (ENSLBEG00000008799)	WIPI1 (ENSLBEG00000008863)	arsg (ENSLBEG00000008927)	slc16a6a (ENSLBEG00000008966)	AMZ2 (ENSLBEG00000008989)	ENSLBEG00000009033	ENSLBEG00000009066	SLC38A10 (ENSLBEG00000009144)
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Gilthead seabream	MODERN SPECIES	12	lyrm1 (ENSSAUG00010014210)	med24 (ENSSAUG00010014117)	ENSSAUG00010014098	ENSSAUG00010014096	top2a (ENSSAUG00010011221)	GJD3 (ENSSAUG00010011207)	ENSSAUG00010011102	mki67 (ENSSAUG00010011099)	tut1 (ENSSAUG00010011096)	pyyb (ENSSAUG00010011094)	ENSSAUG00010011093	ENSSAUG00010011091	mpp2b (ENSSAUG00010009316)	ENSSAUG00010004729	itga3b (ENSSAUG00010004634) #21	dlx3b (ENSSAUG00010004628) #22	dlx4b (ENSSAUG00010004623)	ENSSAUG00010004621	kat7b (ENSSAUG00010003447) #25	ptges3l (ENSSAUG00010003430)	aarsd1 (ENSSAUG00010003402)	myof (ENSSAUG00010003386)	ENSSAUG00010003381	fam20a (ENSSAUG00010003380)	prkar1ab (ENSSAUG00010003312)	WIPI1 (ENSSAUG00010003117)	arsg (ENSSAUG00010003106)	slc16a6a (ENSSAUG00010003103)	AMZ2 (ENSSAUG00010003050)	ENSSAUG00010003044	TEPSIN (ENSSAUG00010003034)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Large yellow croaker	MODERN SPECIES	488	lyrm1 (ENSLCRG00005012309)	ENSLCRG00005012312	med24 (ENSLCRG00005012314)	ENSLCRG00005012344	ENSLCRG00005012347	top2a (ENSLCRG00005012363)	ENSLCRG00005014855	ENSLCRG00005014858	mki67 (ENSLCRG00005014899)	tut1 (ENSLCRG00005014904)	pyyb (ENSLCRG00005014906)	mpp2b (ENSLCRG00005014915)	ENSLCRG00005015241	ENSLCRG00005015265	itga3b (ENSLCRG00005016867) #21	dlx3b (ENSLCRG00005016869) #22	dlx4b (ENSLCRG00005016870)	ENSLCRG00005016871	kat7b (ENSLCRG00005016880) #25	ptges3l (ENSLCRG00005017365)	aarsd1 (ENSLCRG00005017366)	myof (ENSLCRG00005017369)	ENSLCRG00005020122	fam20a (ENSLCRG00005020125)	prkar1ab (ENSLCRG00005020132)	WIPI1 (ENSLCRG00005020139)	arsg (ENSLCRG00005020143)	slc16a6a (ENSLCRG00005020148)	AMZ2 (ENSLCRG00005020149)	ENSLCRG00005020150	TEPSIN (ENSLCRG00005020155)
European seabass	MODERN SPECIES	11	luc7l (ENSDLAG00005001212)	ENSDLAG00005029651	ENSDLAG00005001166	LYRM1 (ENSDLAG00005025526)	dcun1d3 (ENSDLAG00005025527)	KCNJ12 (ENSDLAG00005031588)	ENSDLAG00005034292	LRRC3B (ENSDLAG00005031477)	ENSDLAG00005025051	ENSDLAG00005024942	ENSDLAG00005024936	ENSDLAG00005024912	ENSDLAG00005026702	ENSDLAG00005024771	itga3b (ENSDLAG00005024738) #21	DLX3B (ENSDLAG00005029187) #22	DLX4B (ENSDLAG00005034458)	ENSDLAG00005033082	kat7b (ENSDLAG00005024425) #25	ptges3l (ENSDLAG00005024388)	ENSDLAG00005024369	ENSDLAG00005017759	ENSDLAG00005034771	FAM20A (ENSDLAG00005017282)	prkar1ab (ENSDLAG00005017106)	WIPI1 (ENSDLAG00005017031)	ARSG (ENSDLAG00005016974)	SLC16A6 (ENSDLAG00005016962)	ENSDLAG00005016914	TEPSIN (ENSDLAG00005016882)	ndufaf8 (ENSDLAG00005016857)
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000171499	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00390000015076	ENSGT00520000061927	ENSGT00940000159369	ENSGT00950000183157.a.a.a.b
Lumpfish	MODERN SPECIES	10	med24 (ENSCLMG00005007450)	ENSCLMG00005007447	lyrm1 (ENSCLMG00005007444)	dcun1d3 (ENSCLMG00005007442)	KATNIP (ENSCLMG00005007415)	top2a (ENSCLMG00005005013)	GJD3 (ENSCLMG00005022692)	ENSCLMG00005022691	ENSCLMG00005022690	tut1 (ENSCLMG00005022689)	ENSCLMG00005022688	mpp2b (ENSCLMG00005022687)	ENSCLMG00005022686	ENSCLMG00005022616	itga3b (ENSCLMG00005022588) #21	dlx3b (ENSCLMG00005022583) #22	dlx4b (ENSCLMG00005022581)	ENSCLMG00005022578	kat7b (ENSCLMG00005022559) #25	ptges3l (ENSCLMG00005022556)	aarsd1 (ENSCLMG00005022549)	myof (ENSCLMG00005014741)	fam20a (ENSCLMG00005014518)	prkar1ab (ENSCLMG00005014475)	WIPI1 (ENSCLMG00005014473)	arsg (ENSCLMG00005014470)	slc16a6a (ENSCLMG00005014469)	TEPSIN (ENSCLMG00005014468)	ndufaf8 (ENSCLMG00005014466)	SLC38A10 (ENSCLMG00005014308)	fscn2b (ENSCLMG00005014305)
Stickleback	MODERN SPECIES	5	ENSGACG00000010053	ENSGACG00000010049	atad1b (ENSGACG00000010001)	ENSGACG00000009998	rnls (ENSGACG00000009993)	lipf (ENSGACG00000009981)	ankrd22 (ENSGACG00000009975)	ENSGACG00000009972	ENSGACG00000009970	tut1 (ENSGACG00000009956)	ENSGACG00000009947	mpp2b (ENSGACG00000009935)	ENSGACG00000009932	ENSGACG00000009898	ENSGACG00000009893 #21	dlx3b (ENSGACG00000009888) #22	dlx4b (ENSGACG00000009881)	kat7b (ENSGACG00000009872) #25	aarsd1 (ENSGACG00000009815)	myof (ENSGACG00000009759)	fam20a (ENSGACG00000009751)	prkar1ab (ENSGACG00000009745)	WIPI1 (ENSGACG00000009737)	arsg (ENSGACG00000009724)	SLC16A6 (ENSGACG00000009715)	TEPSIN (ENSGACG00000009710)	SLC38A10 (ENSGACG00000009704)	ENSGACG00000009701	fscn2b (ENSGACG00000009694)	ENSGACG00000009690	birc5a (ENSGACG00000009685)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Pike perch	MODERN SPECIES	89	dcun1d3 (ENSSLUG00000017030)	lyrm1 (ENSSLUG00000017035)	med24 (ENSSLUG00000017095)	ENSSLUG00000017293	ENSSLUG00000017300	top2a (ENSSLUG00000017369)	GJD3 (ENSSLUG00000018431)	ENSSLUG00000018442	mki67 (ENSSLUG00000018465)	tut1 (ENSSLUG00000018474)	pyyb (ENSSLUG00000018479)	mpp2b (ENSSLUG00000018511)	ENSSLUG00000019433	ENSSLUG00000019471	itga3b (ENSSLUG00000019560) #21	dlx3b (ENSSLUG00000019567) #22	dlx4b (ENSSLUG00000019572)	ENSSLUG00000019577	kat7b (ENSSLUG00000019595) #25	ptges3l (ENSSLUG00000019746)	aarsd1 (ENSSLUG00000019759)	myof (ENSSLUG00000019986)	fam20a (ENSSLUG00000021271)	prkar1ab (ENSSLUG00000021312)	WIPI1 (ENSSLUG00000021334)	arsg (ENSSLUG00000021352)	slc16a6a (ENSSLUG00000021360)	ENSSLUG00000021364	ENSSLUG00000021373	TEPSIN (ENSSLUG00000021377)	ndufaf8 (ENSSLUG00000021383)
Channel bull blenny	MODERN SPECIES	10	ENSCGOG00000009913	med24 (ENSCGOG00000009948)	ENSCGOG00000010918	ENSCGOG00000010921	top2a (ENSCGOG00000010952)	GJD3 (ENSCGOG00000011748)	rarab (ENSCGOG00000011751)	ENSCGOG00000011759	mki67 (ENSCGOG00000011764)	tut1 (ENSCGOG00000011774)	pyyb (ENSCGOG00000011792)	mpp2b (ENSCGOG00000011795)	ENSCGOG00000011830	ENSCGOG00000011880	itga3b (ENSCGOG00000012938) #21	dlx3b (ENSCGOG00000013002) #22	dlx4b (ENSCGOG00000013004)	ENSCGOG00000013899	kat7b (ENSCGOG00000013050) #25	ptges3l (ENSCGOG00000013903)	aarsd1 (ENSCGOG00000013921)	myof (ENSCGOG00000014108)	ENSCGOG00000015323	fam20a (ENSCGOG00000015330)	prkar1ab (ENSCGOG00000015471)	WIPI1 (ENSCGOG00000015943)	arsg (ENSCGOG00000016033)	SLC16A6 (ENSCGOG00000016058)	ENSCGOG00000016060	TEPSIN (ENSCGOG00000016067)	ENSCGOG00000016074
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Carangaria	ANCESTRAL SPECIES	13	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Seriola	ANCESTRAL SPECIES	1	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Yellowtail amberjack	MODERN SPECIES	3181														ENSSLDG00000001242	itga3b (ENSSLDG00000001391) #21	dlx3b (ENSSLDG00000001506) #22	dlx4b (ENSSLDG00000001524)	ENSSLDG00000001536	kat7b (ENSSLDG00000001552) #25	ptges3l (ENSSLDG00000001633)	aarsd1 (ENSSLDG00000001645)	myof (ENSSLDG00000001755)	ENSSLDG00000002047	fam20a (ENSSLDG00000002104)	prkar1ab (ENSSLDG00000002144)	WIPI1 (ENSSLDG00000002193)	arsg (ENSSLDG00000002245)	slc16a6a (ENSSLDG00000002297)	AMZ2 (ENSSLDG00000002380)	ENSSLDG00000002405	TEPSIN (ENSSLDG00000002419)
Greater amberjack	MODERN SPECIES	27	lyrm1 (ENSSDUG00000003216)	ENSSDUG00000003238	med24 (ENSSDUG00000003291)	ENSSDUG00000003455	ENSSDUG00000003461	top2a (ENSSDUG00000003473)	ENSSDUG00000003531	ENSSDUG00000003548	mki67 (ENSSDUG00000003593)	tut1 (ENSSDUG00000003613)	pyyb (ENSSDUG00000003640)	mpp2b (ENSSDUG00000003649)	ENSSDUG00000003659	ENSSDUG00000003666	itga3b (ENSSDUG00000003724) #21	dlx3b (ENSSDUG00000003780) #22	dlx4b (ENSSDUG00000003790)	ENSSDUG00000003845	kat7b (ENSSDUG00000003868) #25	ptges3l (ENSSDUG00000003888)	aarsd1 (ENSSDUG00000003913)	ENSSDUG00000003954	myof (ENSSDUG00000003974)	ENSSDUG00000004051	fam20a (ENSSDUG00000004077)	prkar1ab (ENSSDUG00000004114)	WIPI1 (ENSSDUG00000004160)	arsg (ENSSDUG00000004196)	AMZ2 (ENSSDUG00000004210)	slc16a6a (ENSSDUG00000004224)	TEPSIN (ENSSDUG00000004232)
Barramundi perch	MODERN SPECIES	38	cox6b1 (ENSLCAG00010010045)	KATNIP (ENSLCAG00010010056)	lyrm1 (ENSLCAG00010010069)	dcun1d3 (ENSLCAG00010010074)	med24 (ENSLCAG00010010092)	ENSLCAG00010010117	ENSLCAG00010010120	top2a (ENSLCAG00010010228)	ENSLCAG00010011088	tut1 (ENSLCAG00010011112)	ENSLCAG00010011114	mpp2b (ENSLCAG00010011138)	ENSLCAG00010011281	ENSLCAG00010011303	itga3b (ENSLCAG00010011427) #21	dlx3b (ENSLCAG00010011440) #22	dlx4b (ENSLCAG00010011446)	ENSLCAG00010011450	kat7b (ENSLCAG00010011495) #25	aarsd1 (ENSLCAG00010011793)	myof (ENSLCAG00010011933)	fam20a (ENSLCAG00010011945)	prkar1ab (ENSLCAG00010011961)	WIPI1 (ENSLCAG00010012018)	arsg (ENSLCAG00010012046)	slc16a6a (ENSLCAG00010012050)	AMZ2 (ENSLCAG00010012054)	ENSLCAG00010012059	TEPSIN (ENSLCAG00010012063)	ndufaf8 (ENSLCAG00010012078)	SLC38A10 (ENSLCAG00010012082)
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Turbot	MODERN SPECIES	9	ENSSMAG00000011778	dcun1d3 (ENSSMAG00000011768)	lyrm1 (ENSSMAG00000028587)	ENSSMAG00000011625	ENSSMAG00000011616	ENSSMAG00000033948	ENSSMAG00000011555	ENSSMAG00000011550	ENSSMAG00000011485	ENSSMAG00000011449	pyyb (ENSSMAG00000011434)	mpp2b (ENSSMAG00000011416)	ENSSMAG00000011400	ENSSMAG00000011368	itga3b (ENSSMAG00000011303) #21	dlx3b (ENSSMAG00000011274) #22	dlx4b (ENSSMAG00000011224)	ENSSMAG00000011204	kat7b (ENSSMAG00000011153) #25	ptges3l (ENSSMAG00000011132)	ENSSMAG00000037801	ENSSMAG00000010989	ENSSMAG00000010963	FAM20A (ENSSMAG00000010929)	prkar1ab (ENSSMAG00000010895)	WIPI1 (ENSSMAG00000010861)	arsg (ENSSMAG00000010845)	SLC16A6 (ENSSMAG00000010828)	ENSSMAG00000010825	TEPSIN (ENSSMAG00000010814)	ndufaf8 (ENSSMAG00000010791)
Tongue sole	MODERN SPECIES	18	ENSCSEG00000019530	trpm4b.2 (ENSCSEG00000019535)	ENSCSEG00000019552	ENSCSEG00000019561	ENSCSEG00000019562	ENSCSEG00000019566	ENSCSEG00000019581	ENSCSEG00000019583	pax10 (ENSCSEG00000019587)	zgc:92313 (ENSCSEG00000019589)	mapk7 (ENSCSEG00000019596)	vkorc1 (ENSCSEG00000019605)	ENSCSEG00000019607	ENSCSEG00000019613	itga3b (ENSCSEG00000019633) #21	dlx3b (ENSCSEG00000019645) #22	dlx4b (ENSCSEG00000019648)	MRTFB (ENSCSEG00000019654)	ercc4 (ENSCSEG00000019658)	cpped1 (ENSCSEG00000019665)	shisa9a (ENSCSEG00000019672)	SNX29 (ENSCSEG00000019675)	rsl1d1 (ENSCSEG00000019693)	ENSCSEG00000019698	ENSCSEG00000019702	gspt1 (ENSCSEG00000019708)	dmc1 (ENSCSEG00000019719)	tomm22 (ENSCSEG00000019726)	maff (ENSCSEG00000019729)	tmem184ba (ENSCSEG00000019733)	csnk1e (ENSCSEG00000019742)
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00390000006695	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00390000004566	ENSGT00940000154944	ENSGT00390000006695	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Climbing perch	MODERN SPECIES	10	ENSATEG00000014853	dcun1d3 (ENSATEG00000014844)	lyrm1 (ENSATEG00000014820)	ENSATEG00000014727	ENSATEG00000014705	ENSATEG00000014699	ENSATEG00000028770	ENSATEG00000014673	ENSATEG00000014623	tut1 (ENSATEG00000014590)	ENSATEG00000014582	mpp2b (ENSATEG00000014563)	ENSATEG00000029752	ENSATEG00000014470	itga3b (ENSATEG00000014441) #21	dlx3b (ENSATEG00000014418) #22	dlx4b (ENSATEG00000014408)	ENSATEG00000014370	ENSATEG00000014335	ptges3l (ENSATEG00000014226)	ENSATEG00000014178	ENSATEG00000014081	ENSATEG00000025355	FAM20A (ENSATEG00000014047)	prkar1ab (ENSATEG00000014019)	WIPI1 (ENSATEG00000013991)	arsg (ENSATEG00000013979)	SLC16A6 (ENSATEG00000013972)	AMZ2 (ENSATEG00000028806)	ENSATEG00000013935	TEPSIN (ENSATEG00000013923)
Siamese fighting fish	MODERN SPECIES	9	dcun1d3 (ENSBSLG00000015133)	lyrm1 (ENSBSLG00000015129)	ENSBSLG00000015127	med24 (ENSBSLG00000014958)	ENSBSLG00000014942	ENSBSLG00000014938	top2a (ENSBSLG00000014346)	ENSBSLG00000014111	mki67 (ENSBSLG00000014054)	tut1 (ENSBSLG00000013727)	pyyb (ENSBSLG00000013716)	mpp2b (ENSBSLG00000013309)	ENSBSLG00000013044	ENSBSLG00000009950	itga3b (ENSBSLG00000009788) #21	dlx3b (ENSBSLG00000009744) #22	dlx4b (ENSBSLG00000009692)	ENSBSLG00000009312	kat7b (ENSBSLG00000008850) #25	ptges3l (ENSBSLG00000008842)	aarsd1 (ENSBSLG00000008829)	ENSBSLG00000008826	myof (ENSBSLG00000007991)	fam20a (ENSBSLG00000007794)	prkar1ab (ENSBSLG00000007141)	WIPI1 (ENSBSLG00000007007)	arsg (ENSBSLG00000006921)	slc16a6a (ENSBSLG00000006909)	AMZ2 (ENSBSLG00000006890)	ENSBSLG00000006863	TEPSIN (ENSBSLG00000006805)
Zig-zag eel	MODERN SPECIES	10	dcun1d3 (ENSMAMG00000024736)	lyrm1 (ENSMAMG00000025899)	ENSMAMG00000008350	ENSMAMG00000027196	ENSMAMG00000008334	ENSMAMG00000008306	ENSMAMG00000008294	ENSMAMG00000008234	mki67 (ENSMAMG00000008209)	tut1 (ENSMAMG00000008173)	pyyb (ENSMAMG00000008164)	mpp2b (ENSMAMG00000008146)	ENSMAMG00000024846	ENSMAMG00000008076	itga3b (ENSMAMG00000008049) #21	dlx3b (ENSMAMG00000008034) #22	dlx4b (ENSMAMG00000008029)	ENSMAMG00000008017	kat7b (ENSMAMG00000007970) #25	ptges3l (ENSMAMG00000007949)	ENSMAMG00000007918	ENSMAMG00000007815	ENSMAMG00000007795	FAM20A (ENSMAMG00000007760)	prkar1ab (ENSMAMG00000026209)	WIPI1 (ENSMAMG00000007688)	arsg (ENSMAMG00000007670)	SLC16A6 (ENSMAMG00000007661)	ENSMAMG00000007650	ENSMAMG00000027537	TEPSIN (ENSMAMG00000007622)
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.f.a.b	ENSGT01090000260005.a.b.a.a.e	ENSGT01090000260005.a.b.a.a.f.a.a	ENSGT01090000260005.a.b.a.a.f.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.f.a.b	ENSGT01090000260005.a.b.a.a.e	ENSGT01090000260005.a.b.a.a.f.a.a	ENSGT01090000260005.a.b.a.a.f.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.f.a.b	ENSGT01090000260005.a.b.a.a.e.a	ENSGT01090000260005.a.b.a.a.f.a.a	ENSGT01090000260005.a.b.a.a.f.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.f.a.b	ENSGT01090000260005.a.b.a.a.e.a	ENSGT01090000260005.a.b.a.a.f.a.a	ENSGT01090000260005.a.b.a.a.f.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.f.a.b	ENSGT01090000260005.a.b.a.a.e.a	ENSGT01090000260005.a.b.a.a.f.a.a	ENSGT01090000260005.a.b.a.a.f.b	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Eastern happy	MODERN SPECIES	20	ENSACLG00000013044	top2a (ENSACLG00000013052)	GJD3 (ENSACLG00000013087)	GJD3 (ENSACLG00000013089)	GJD3 (ENSACLG00000013094)	GJD3 (ENSACLG00000013096)	GJD3 (ENSACLG00000013113)	ENSACLG00000013375	mki67 (ENSACLG00000013395)	tut1 (ENSACLG00000013406)	pyyb (ENSACLG00000013424)	mpp2b (ENSACLG00000013432)	ENSACLG00000013473	ENSACLG00000013478	itga3b (ENSACLG00000013522) #21	dlx3b (ENSACLG00000013558) #22	dlx4b (ENSACLG00000013582)	ENSACLG00000013583	ENSACLG00000013586	kat7b (ENSACLG00000013593) #25	ENSACLG00000013632	ptges3l (ENSACLG00000013643)	aarsd1 (ENSACLG00000013655)	myof (ENSACLG00000013706)	ENSACLG00000014085	fam20a (ENSACLG00000014112)	prkar1ab (ENSACLG00000014175)	WIPI1 (ENSACLG00000014240)	arsg (ENSACLG00000014285)	slc16a6a (ENSACLG00000014306)	AMZ2 (ENSACLG00000014332)
Zebra mbuna	MODERN SPECIES	1111	med24 (ENSMZEG00005010058)	ENSMZEG00005010039	ENSMZEG00005010031	top2a (ENSMZEG00005009940)	GJD3 (ENSMZEG00005009897)	GJD3 (ENSMZEG00005009888)	GJD3 (ENSMZEG00005009882)	ENSMZEG00005009857	ENSMZEG00005009812	tut1 (ENSMZEG00005009777)	pyyb (ENSMZEG00005009769)	mpp2b (ENSMZEG00005009710)	ENSMZEG00005009682	ENSMZEG00005009619	itga3b (ENSMZEG00005009569) #21	dlx3b (ENSMZEG00005009550) #22	dlx4b (ENSMZEG00005009543)	ENSMZEG00005009536	kat7b (ENSMZEG00005009518) #25	ENSMZEG00005009508	ptges3l (ENSMZEG00005009498)	aarsd1 (ENSMZEG00005009412)	myof (ENSMZEG00005009340)	ENSMZEG00005009325	fam20a (ENSMZEG00005009297)	prkar1ab (ENSMZEG00005009276)	WIPI1 (ENSMZEG00005009246)	arsg (ENSMZEG00005009237)	ENSMZEG00005009229	slc16a6a (ENSMZEG00005009217)	AMZ2 (ENSMZEG00005009195)
P. nyererei	MODERN SPECIES	300	ENSPNYG00000018297	ENSPNYG00000018310	top2a (ENSPNYG00000018347)	GJD3 (ENSPNYG00000018610)	GJD3 (ENSPNYG00000018629)	GJD3 (ENSPNYG00000018641)	GJD3 (ENSPNYG00000018651)	ENSPNYG00000018679	ENSPNYG00000018732	tut1 (ENSPNYG00000018764)	ENSPNYG00000018776	mpp2b (ENSPNYG00000018817)	ENSPNYG00000018853	ENSPNYG00000018871	itga3b (ENSPNYG00000018940) #21	dlx3b (ENSPNYG00000018958) #22	dlx4b (ENSPNYG00000018976)	ENSPNYG00000018985	kat7b (ENSPNYG00000019001) #25	ptges3l (ENSPNYG00000019036)	aarsd1 (ENSPNYG00000019048)	myof (ENSPNYG00000019120)	ENSPNYG00000019220	fam20a (ENSPNYG00000019244)	prkar1ab (ENSPNYG00000019294)	WIPI1 (ENSPNYG00000019324)	arsg (ENSPNYG00000019371)	slc16a6a (ENSPNYG00000019382)	AMZ2 (ENSPNYG00000019390)	TEPSIN (ENSPNYG00000019399)	ndufaf8 (ENSPNYG00000019416)
Burton s mouthbrooder	MODERN SPECIES	419								ENSHBUG00000022888	mki67 (ENSHBUG00000022872)	tut1 (ENSHBUG00000022855)	pyyb (ENSHBUG00000022839)	mpp2b (ENSHBUG00000022827)	ENSHBUG00000022733	ENSHBUG00000022706	itga3b (ENSHBUG00000022594) #21	dlx3 (ENSHBUG00000022535) #22	dlx4b (ENSHBUG00000022515)	ENSHBUG00000022497	kat7b (ENSHBUG00000022480) #25	ptges3l (ENSHBUG00000022414)	aarsd1 (ENSHBUG00000022391)	myof (ENSHBUG00000022303)	ENSHBUG00000022179	fam20a (ENSHBUG00000022168)	prkar1ab (ENSHBUG00000022126)	WIPI1 (ENSHBUG00000022078)	arsg (ENSHBUG00000022043)	slc16a6a (ENSHBUG00000022033)	AMZ2 (ENSHBUG00000022025)	TEPSIN (ENSHBUG00000022018)	ndufaf8 (ENSHBUG00000021990)
Lyretail cichlid	MODERN SPECIES	366	ENSNBRG00000022201	ENSNBRG00000022189	ENSNBRG00000022169	GJD3 (ENSNBRG00000022157)	GJD3 (ENSNBRG00000022144)	GJD3 (ENSNBRG00000022134)	GJD3 (ENSNBRG00000022122)	ENSNBRG00000022104	tut1 (ENSNBRG00000022055)	ENSNBRG00000022028	mpp2b (ENSNBRG00000021990)	ENSNBRG00000021974	ENSNBRG00000021926	ENSNBRG00000021908	itga3b (ENSNBRG00000021868) #21	dlx3b (ENSNBRG00000021853) #22	dlx4b (ENSNBRG00000021808)	ENSNBRG00000021786	kat7b (ENSNBRG00000021749) #25	ptges3l (ENSNBRG00000021656)	aarsd1 (ENSNBRG00000021624)	myof (ENSNBRG00000021525)	fam20a (ENSNBRG00000021476)	prkar1ab (ENSNBRG00000021437)	WIPI1 (ENSNBRG00000021405)	arsg (ENSNBRG00000021392)	slc16a6a (ENSNBRG00000021381)	AMZ2 (ENSNBRG00000021371)	TEPSIN (ENSNBRG00000021362)	ndufaf8 (ENSNBRG00000021357)	SLC38A10 (ENSNBRG00000021319)
Nile tilapia	MODERN SPECIES	20	med24 (ENSONIG00000019926)	ENSONIG00000040074	ENSONIG00000021204	top2a (ENSONIG00000019923)	ENSONIG00000041139	GJD3 (ENSONIG00000038018)	GJD3 (ENSONIG00000028106)	ENSONIG00000019915	mki67 (ENSONIG00000019914)	tut1 (ENSONIG00000019913)	pyyb (ENSONIG00000019912)	mpp2b (ENSONIG00000019910)	ENSONIG00000019909	ENSONIG00000019905	itga3b (ENSONIG00000019898) #21	dlx3 (ENSONIG00000038305) #22	dlx4b (ENSONIG00000019896)	ENSONIG00000035383	kat7b (ENSONIG00000019895) #25	ptges3l (ENSONIG00000031806)	aarsd1 (ENSONIG00000019893)	myof (ENSONIG00000019881)	ENSONIG00000019876	prkar1ab (ENSONIG00000019872)	fam20a (ENSONIG00000019874)	WIPI1 (ENSONIG00000019871)	arsg (ENSONIG00000019870)	slc16a6a (ENSONIG00000019866)	AMZ2 (ENSONIG00000019865)	TEPSIN (ENSONIG00000019864)	ndufaf8 (ENSONIG00000040245)
Midas cichlid	MODERN SPECIES	194	dcun1d3 (ENSACIG00000000658)	lyrm1 (ENSACIG00000000669)	med24 (ENSACIG00000000740)	ENSACIG00000000817	ENSACIG00000000829	ENSACIG00000000841	ENSACIG00000000862	ENSACIG00000000892	mki67 (ENSACIG00000000913)	tut1 (ENSACIG00000000948)	pyyb (ENSACIG00000001036)	mpp2b (ENSACIG00000001055)	ENSACIG00000001082	ENSACIG00000001117	itga3b (ENSACIG00000001194) #21	dlx3b (ENSACIG00000001390) #22	dlx4b (ENSACIG00000001402)	ENSACIG00000001413	kat7b (ENSACIG00000001428) #25	ptges3l (ENSACIG00000001466)	aarsd1 (ENSACIG00000001519)	myof (ENSACIG00000001558)	fam20a (ENSACIG00000001697)	prkar1ab (ENSACIG00000001726)	WIPI1 (ENSACIG00000001750)	arsg (ENSACIG00000001784)	slc16a6a (ENSACIG00000001813)	AMZ2 (ENSACIG00000001850)	ENSACIG00000001871	TEPSIN (ENSACIG00000001879)	ndufaf8 (ENSACIG00000001906)
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438.gb.b	ENSGT00390000016438.fb	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT00390000015076	ENSGT00520000061927
Amphiprion	ANCESTRAL SPECIES	28	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438.gb.a	ENSGT00390000016438.fb	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d
Orange clownfish	MODERN SPECIES	10	lyrm1 (ENSAPEG00000005661)	ENSAPEG00000005599	med24 (ENSAPEG00000005476)	ENSAPEG00000005405	ENSAPEG00000005391	top2a (ENSAPEG00000005374)	GJD3 (ENSAPEG00000005309)	ENSAPEG00000005260	mki67 (ENSAPEG00000005238)	tut1 (ENSAPEG00000005144)	pyyb (ENSAPEG00000005129)	mpp2b (ENSAPEG00000005068)	ENSAPEG00000004973	ENSAPEG00000004884	itga3b (ENSAPEG00000004868) #21	dlx3b (ENSAPEG00000004851) #22	dlx4b (ENSAPEG00000004834)	ENSAPEG00000004808	kat7b (ENSAPEG00000004738) #25	ptges3l (ENSAPEG00000004713)	aarsd1 (ENSAPEG00000004670)	myof (ENSAPEG00000004503)	ENSAPEG00000004479	ENSAPEG00000004452	ENSAPEG00000004431	ercc4 (ENSAPEG00000004385)	QRFPR (ENSAPEG00000004347)	ENSAPEG00000004262	ENSAPEG00000004223	ENSAPEG00000004113	ENSAPEG00000004068
Clown anemonefish	MODERN SPECIES	1065	ENSAOCG00000001800	mettl26 (ENSAOCG00000015462)	wfikkn1 (ENSAOCG00000015440)	rab40c (ENSAOCG00000015431)	zp3c (ENSAOCG00000015396)	ENSAOCG00000001067	CALHM1 (ENSAOCG00000015350)	zgc:175214 (ENSAOCG00000015327)	pdcd11 (ENSAOCG00000015287)	taf5 (ENSAOCG00000001060)	atp5md (ENSAOCG00000015202)	inab (ENSAOCG00000001059)	ENSAOCG00000015178	ENSAOCG00000015119	itga3b (ENSAOCG00000002539) #21	dlx3b (ENSAOCG00000014963) #22	dlx4b (ENSAOCG00000014952)	ENSAOCG00000014899	kat7b (ENSAOCG00000014886) #25	ptges3l (ENSAOCG00000014828)	aarsd1 (ENSAOCG00000014735)	myof (ENSAOCG00000014674)	ENSAOCG00000014327	ash1l (ENSAOCG00000014299)	ENSAOCG00000014280	scamp3 (ENSAOCG00000014254)	crabp2b (ENSAOCG00000014237)	mrps21 (ENSAOCG00000014214)	ciarta (ENSAOCG00000014201)	ENSAOCG00000014188	cand1 (ENSAOCG00000000921)
Spiny chromis	MODERN SPECIES	926												mibp2 (ENSAPOG00000006230)	ENSAPOG00000006249	ENSAPOG00000006368	itga3b (ENSAPOG00000006569) #21	dlx3b (ENSAPOG00000006602) #22	dlx4b (ENSAPOG00000006609)	ENSAPOG00000006615	kat7b (ENSAPOG00000006694) #25	ptges3l (ENSAPOG00000006707)	aarsd1 (ENSAPOG00000006776)	myof (ENSAPOG00000007258)	ENSAPOG00000007280	fam20a (ENSAPOG00000007340)	prkar1ab (ENSAPOG00000000200)	WIPI1 (ENSAPOG00000007423)	ARSG (ENSAPOG00000007441)
Bicolor damselfish	MODERN SPECIES	2055													ENSSPAG00000008103	ENSSPAG00000008121	itga3b (ENSSPAG00000008189) #21	dlx3b (ENSSPAG00000008224) #22	dlx4b (ENSSPAG00000008234)
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Oryzias	ANCESTRAL SPECIES	11	ENSGT00390000016401	ENSGT00940000162787.d	ENSGT00520000055570.A.a	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.c	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.m.a	ENSGT00940000163600.n	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.c	ENSGT00940000165576.b	ENSGT01090000260005.a.b.a.a.d	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.m.b	ENSGT01000000216334	ENSGT00940000163600.n	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00390000015076	ENSGT00520000061927	ENSGT00940000159369	ENSGT00940000160116.a
Javanese ricefish	MODERN SPECIES	10	ghdc (ENSOJAG00000013440)	ENSOJAG00000013417	GPAM (ENSOJAG00000013344)	ENSOJAG00000013330	top2a (ENSOJAG00000011020)	GJD3 (ENSOJAG00000010936)	rarab (ENSOJAG00000010801)	mki67 (ENSOJAG00000010778)	tut1 (ENSOJAG00000010729)	pyyb (ENSOJAG00000010716)	mpp2b (ENSOJAG00000010194)	ENSOJAG00000010118	ENSOJAG00000010107	ENSOJAG00000009873	itga3b (ENSOJAG00000009815) #21	dlx3b (ENSOJAG00000009789) #22	dlx4b (ENSOJAG00000009752)	ENSOJAG00000009742	ENSOJAG00000009501	aarsd1 (ENSOJAG00000009158)	fam20a (ENSOJAG00000006435)	WIPI1 (ENSOJAG00000005621)	arsg (ENSOJAG00000005572)	SLC16A6 (ENSOJAG00000005557)	TEPSIN (ENSOJAG00000005543)	ENSOJAG00000005528	SLC38A10 (ENSOJAG00000005471)	fscn2b (ENSOJAG00000005439)	FAAP100 (ENSOJAG00000005375)	birc5a (ENSOJAG00000005361)	TMEM235 (ENSOJAG00000005352)
Indian medaka	MODERN SPECIES	17	top2a (ENSOMEG00000005005)	ENSOMEG00000005022	ENSOMEG00000005034	ENSOMEG00000005084	mki67 (ENSOMEG00000005118)	tut1 (ENSOMEG00000005129)	pyyb (ENSOMEG00000005149)	mpp2b (ENSOMEG00000005227)	ENSOMEG00000005247	ENSOMEG00000005257	ENSOMEG00000005262	ENSOMEG00000005294	ENSOMEG00000005316	ENSOMEG00000005380	itga3b (ENSOMEG00000005453) #21	dlx3b (ENSOMEG00000005465) #22	dlx4b (ENSOMEG00000005475)	ENSOMEG00000005494	kat7b (ENSOMEG00000005532) #25	ptges3l (ENSOMEG00000005562)	aarsd1 (ENSOMEG00000000122)	myof (ENSOMEG00000005620)	fam20a (ENSOMEG00000005711)	prkar1ab (ENSOMEG00000005745)	WIPI1 (ENSOMEG00000005782)	arsg (ENSOMEG00000005829)	SLC16A6 (ENSOMEG00000005840)	TEPSIN (ENSOMEG00000005864)	ndufaf8 (ENSOMEG00000005876)	SLC38A10 (ENSOMEG00000005920)	BAHCC1 (ENSOMEG00000005958)
Oryzias_a	ANCESTRAL SPECIES	32	ENSGT00940000162787.d	ENSGT00520000055570.A.a	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a.d	ENSGT01090000260005.a.b.a.a.c	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600.m.a	ENSGT00940000163600.n	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Chinese medaka	MODERN SPECIES	537															itga3b (ENSOSIG00000017613) #21	dlx3b (ENSOSIG00000018579) #22	dlx4b (ENSOSIG00000018583)	ENSOSIG00000018588	kat7b (ENSOSIG00000018599) #25	aarsd1 (ENSOSIG00000018800)	ENSOSIG00000019161	fam20a (ENSOSIG00000019170)	prkar1ab (ENSOSIG00000019180)	WIPI1 (ENSOSIG00000019196)	ARSG (ENSOSIG00000019207)	SLC16A6 (ENSOSIG00000019212)	ENSOSIG00000019216	ENSOSIG00000019218	TEPSIN (ENSOSIG00000019221)	ndufaf8 (ENSOSIG00000019338)	SLC38A10 (ENSOSIG00000019369)
Japanese Medaka HdrR	MODERN SPECIES	10	ENSORLG00000004451	GPAM (ENSORLG00000004440)	ENSORLG00000030545	top2a (ENSORLG00000004407)	ENSORLG00000026741	ENSORLG00000004380	ENSORLG00000004373	mki67 (ENSORLG00000004358)	tut1 (ENSORLG00000004342)	pyyb (ENSORLG00000028594)	mpp2b (ENSORLG00000004328)	ENSORLG00000004315	ENSORLG00000004312	ENSORLG00000004282	itga3b (ENSORLG00000004209) #21	dlx3b (ENSORLG00000004116) #22	dlx4b (ENSORLG00000004106)	ENSORLG00000024634	kat7b (ENSORLG00000004096) #25	ptges3l (ENSORLG00000004068)	aarsd1 (ENSORLG00000022752)	ENSORLG00000026111	myof (ENSORLG00000004031)	ENSORLG00000022716	fam20a (ENSORLG00000003869)	prkar1ab (ENSORLG00000003858)	WIPI1 (ENSORLG00000003834)	arsg (ENSORLG00000003750)	slc16a6a (ENSORLG00000003719)	ENSORLG00000028540	TEPSIN (ENSORLG00000027971)
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Cyprinodontoidei	ANCESTRAL SPECIES	28						ENSGT00510000047886.a.a	ENSGT00940000161824	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713	ENSGT00940000155381	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000163600.l	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000164818.c.a	ENSGT00510000047886.a.a	ENSGT00940000161824	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000163600.l	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000166206	ENSGT00940000164818.c.a	ENSGT00510000047886.a.a	ENSGT00940000161824	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000178666	ENSGT00940000163600.l	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
NAME_6	ANCESTRAL SPECIES		ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00940000164818.c.a	ENSGT00510000047886.a.a	ENSGT00940000161824	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713	ENSGT00940000158652	ENSGT00940000168282	ENSGT00940000155381	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000163600.l	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076	ENSGT00520000061927
Sailfin molly	MODERN SPECIES	1628							pvalb9 (ENSPLAG00000011848)	ccz1 (ENSPLAG00000011830)	dlgap5 (ENSPLAG00000011788)	ENSPLAG00000011775	PMS2 (ENSPLAG00000011696)	eif2ak1 (ENSPLAG00000011689)	ENSPLAG00000011678	ENSPLAG00000011662	ENSPLAG00000011646	dlx3b (ENSPLAG00000011637) #22	dlx4b (ENSPLAG00000011627)
Amazon molly	MODERN SPECIES	256	MBTD1 (ENSPFOG00000012998)	tdrkh (ENSPFOG00000013032)	nme2a (ENSPFOG00000013046)	TECPR1 (ENSPFOG00000013231)	bhlha15 (ENSPFOG00000013242)	pvalb3 (ENSPFOG00000013254)	pvalb9 (ENSPFOG00000021837)	ccz1 (ENSPFOG00000013364)	dlgap5 (ENSPFOG00000013416)	rsph10b (ENSPFOG00000013464)	PMS2 (ENSPFOG00000013622)	eif2ak1 (ENSPFOG00000013722)	ENSPFOG00000013759	ENSPFOG00000013796	ENSPFOG00000013833	dlx3b (ENSPFOG00000013899) #22	dlx4b (ENSPFOG00000013933)	kat7b (ENSPFOG00000014010) #25	ENSPFOG00000021958	aarsd1 (ENSPFOG00000014083)	MYOF (ENSPFOG00000014487)	fam20a (ENSPFOG00000014572)	prkar1ab (ENSPFOG00000014645)	WIPI1 (ENSPFOG00000014721)	arsg (ENSPFOG00000014812)	slc16a6a (ENSPFOG00000014875)	AMZ2 (ENSPFOG00000014904)	ENSPFOG00000023844	TEPSIN (ENSPFOG00000014936)	SLC38A10 (ENSPFOG00000014982)	ENSPFOG00000015049
Guppy	MODERN SPECIES	449	TMEM94 (ENSPREG00000004033)	MBTD1 (ENSPREG00000004175)	tdrkh (ENSPREG00000004213)	nme2a (ENSPREG00000004292)	TECPR1 (ENSPREG00000004319)	bhlha15 (ENSPREG00000004388)	pvalb3 (ENSPREG00000004400)	pvalb9 (ENSPREG00000004410)	ccz1 (ENSPREG00000004429)	dlgap5 (ENSPREG00000004478)	rsph10b (ENSPREG00000004527)	PMS2 (ENSPREG00000004603)	eif2ak1 (ENSPREG00000004617)	ENSPREG00000004645	ENSPREG00000004651	dlx3b (ENSPREG00000004660) #22	dlx4b (ENSPREG00000004689)	ENSPREG00000004693	kat7b (ENSPREG00000004716) #25	ptges3l (ENSPREG00000004771)	aarsd1 (ENSPREG00000004827)	ENSPREG00000004870
Platyfish	MODERN SPECIES	1	tdrkh (ENSXMAG00000014756)	nme2a (ENSXMAG00000027226)	ENSXMAG00000014785	bhlha15 (ENSXMAG00000024592)	pvalb3 (ENSXMAG00000014664)	pvalb9 (ENSXMAG00000014851)	ccz1 (ENSXMAG00000014852)	dlgap5 (ENSXMAG00000014870)	rsph10b (ENSXMAG00000014874)	ENSXMAG00000029423	PMS2 (ENSXMAG00000014877)	ENSXMAG00000014911	eif2ak1 (ENSXMAG00000014906)	ENSXMAG00000014915	ENSXMAG00000028186	dlx3b (ENSXMAG00000014973) #22	dlx4b (ENSXMAG00000025075)	ENSXMAG00000022703	ENSXMAG00000023684	kat7b (ENSXMAG00000016262) #25	ptges3l (ENSXMAG00000026237)	aarsd1 (ENSXMAG00000016266)	myof (ENSXMAG00000016283)	fam20a (ENSXMAG00000016300)	prkar1ab (ENSXMAG00000016321)	WIPI1 (ENSXMAG00000024218)	arsg (ENSXMAG00000016403)	slc16a6a (ENSXMAG00000016424)	AMZ2 (ENSXMAG00000016432)	ENSXMAG00000028052	TEPSIN (ENSXMAG00000016437)
NAME_4	ANCESTRAL SPECIES	177	ENSGT00390000009005	ENSGT00940000154696	ENSGT00390000016052	ENSGT00940000154335.b	ENSGT00550000074823.b.a	ENSGT00390000018409.g	ENSGT00510000047886.a.a	ENSGT00940000161824	ENSGT00940000163144.a.a.a	ENSGT00940000163861.b	ENSGT00390000004713	ENSGT00940000155381	ENSGT00940000157605	ENSGT00940000154596.b	ENSGT00940000163600.l	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000157744.d #25	ENSGT00940000176912	ENSGT00940000163448	ENSGT00940000156241
Mummichog	MODERN SPECIES	374	ptena (ENSFHEG00000019837)	atad1b (ENSFHEG00000019807)	minpp1b (ENSFHEG00000019781)	TECPR1 (ENSFHEG00000019768)	bhlha15 (ENSFHEG00000019607)	pvalb3 (ENSFHEG00000019594)	pvalb9 (ENSFHEG00000019572)	ccz1 (ENSFHEG00000019553)	dlgap5 (ENSFHEG00000000500)	rsph10b (ENSFHEG00000019458)	PMS2 (ENSFHEG00000019449)	eif2ak1 (ENSFHEG00000019443)	ENSFHEG00000019434	ENSFHEG00000019423	ENSFHEG00000019412	dlx3b (ENSFHEG00000019384) #22	dlx4b (ENSFHEG00000019376)	ENSFHEG00000019363	kat7b (ENSFHEG00000000497) #25	ENSFHEG00000019281	ptges3l (ENSFHEG00000019265)	aarsd1 (ENSFHEG00000019252)
Sheepshead minnow	MODERN SPECIES	734								shcbp1 (ENSCVAG00000019201)	ADAMTS17 (ENSCVAG00000019188)	ENSCVAG00000019001	ENSCVAG00000018968	ccz1 (ENSCVAG00000018954)	PMS2 (ENSCVAG00000018884)	eif2ak1 (ENSCVAG00000018782)	ENSCVAG00000018761	dlx3b (ENSCVAG00000018749) #22	dlx4b (ENSCVAG00000018735)	ENSCVAG00000018719	kat7b (ENSCVAG00000018705) #25	ptges3l (ENSCVAG00000018627)	aarsd1 (ENSCVAG00000018616)
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00390000006695	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00940000176912	ENSGT00940000157744.d #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00940000154741.d	ENSGT00940000166249	ENSGT00950000182951.A.b	ENSGT00940000155148.a.b	ENSGT00940000156833.a	ENSGT00940000159093	ENSGT00940000155575.i.a	ENSGT00530000063996.a	ENSGT01030000234951	ENSGT00390000015076
Mangrove rivulus	MODERN SPECIES	43	ENSKMAG00000010572	med24 (ENSKMAG00000010458)	ENSKMAG00000010414	ENSKMAG00000010406	top2a (ENSKMAG00000010170)	GJD3 (ENSKMAG00000010108)	ENSKMAG00000010075	mki67 (ENSKMAG00000010044)	tut1 (ENSKMAG00000010023)	pyyb (ENSKMAG00000009997)	mpp2b (ENSKMAG00000009935)	ENSKMAG00000009898	ENSKMAG00000009871	itga3b (ENSKMAG00000009831) #21	ENSKMAG00000009792	dlx3b (ENSKMAG00000009764) #22	dlx4b (ENSKMAG00000009742)	ENSKMAG00000009717	kat7b (ENSKMAG00000009669) #25	ptges3l (ENSKMAG00000009650)	aarsd1 (ENSKMAG00000009612)	myof (ENSKMAG00000009442)	fam20a (ENSKMAG00000009403)	prkar1ab (ENSKMAG00000009362)	WIPI1 (ENSKMAG00000009313)	arsg (ENSKMAG00000009288)	slc16a6a (ENSKMAG00000009269)	AMZ2 (ENSKMAG00000009252)	ENSKMAG00000009226	TEPSIN (ENSKMAG00000009169)	ndufaf8 (ENSKMAG00000009139)
Turquoise killifish	MODERN SPECIES	1621	med24 (ENSNFUG00015008148)	Nfu_g_1_023257 (ENSNFUG00015008189)	ENSNFUG00015008193	ENSNFUG00015008195	top2a (ENSNFUG00015008345)	GJD3 (ENSNFUG00015011048)	RARAB (ENSNFUG00015011070)	ENSNFUG00015011149	mki67 (ENSNFUG00015011162)	tut1 (ENSNFUG00015011175)	pyyb (ENSNFUG00015011210)	mpp2b (ENSNFUG00015011549)	ENSNFUG00015012961	ENSNFUG00015012996	ITGA3B (ENSNFUG00015013241) #21	DLX3B (ENSNFUG00015013248) #22	DLX4B (ENSNFUG00015013249)	SI (ENSNFUG00015013251)	KAT7 (ENSNFUG00015013264) #25	ENSNFUG00015013381	ENSNFUG00015013392	ENSNFUG00015013399	ENSNFUG00015013409	NUF2 (ENSNFUG00015013438)	ENSNFUG00015013445	ENSNFUG00015013449	hbbe3 (ENSNFUG00015013458)	ENSNFUG00015013463	hbae5 (ENSNFUG00015013469)	ENSNFUG00015013475	lcmt1 (ENSNFUG00015013483)
Pinecone sodierfish	MODERN SPECIES	10	KATNIP (ENSMMDG00005015362)	dcun1d3 (ENSMMDG00005015577)	lyrm1 (ENSMMDG00005015579)	med24 (ENSMMDG00005015597)	ENSMMDG00005015676	ENSMMDG00005015680	top2a (ENSMMDG00005015774)	ENSMMDG00005020512	mki67 (ENSMMDG00005020518)	tut1 (ENSMMDG00005020522)	pyyb (ENSMMDG00005020523)	mpp2b (ENSMMDG00005020526)	ENSMMDG00005020530	ENSMMDG00005020542	itga3b (ENSMMDG00005020569) #21	dlx3b (ENSMMDG00005020572) #22	dlx4b (ENSMMDG00005020574)	ENSMMDG00005020575	kat7b (ENSMMDG00005020586) #25	ptges3l (ENSMMDG00005020946)	aarsd1 (ENSMMDG00005020956)	MYOF (ENSMMDG00005021144)	fam20a (ENSMMDG00005021147)	prkar1ab (ENSMMDG00005021180)	WIPI1 (ENSMMDG00005021393)	arsg (ENSMMDG00005021402)	slc16a6a (ENSMMDG00005021429)	AMZ2 (ENSMMDG00005021430)	ENSMMDG00005021431	TEPSIN (ENSMMDG00005021432)	ndufaf8 (ENSMMDG00005021434)
Cod	MODERN SPECIES	9	ENSGMOG00000011594	ENSGMOG00000011603	ENSGMOG00000020237	ENSGMOG00000006520	ENSGMOG00000006509	ENSGMOG00000020236	ENSGMOG00000026895	ENSGMOG00000013405	tut1 (ENSGMOG00000013378)	pyyb (ENSGMOG00000013374)	mpp2b (ENSGMOG00000013359)	ENSGMOG00000029165	ENSGMOG00000013301	ENSGMOG00000024415	itga3b (ENSGMOG00000026588) #21	dlx3b (ENSGMOG00000013282) #22	dlx4b (ENSGMOG00000029167)	ENSGMOG00000036416	ENSGMOG00000035873	kat7b (ENSGMOG00000013251) #25	ptges3l (ENSGMOG00000024320)	ENSGMOG00000013229	ENSGMOG00000013184	ENSGMOG00000013169	FAM20A (ENSGMOG00000013155)	prkar1ab (ENSGMOG00000013144)	WIPI1 (ENSGMOG00000013132)	ARSG (ENSGMOG00000013121)	SLC16A6 (ENSGMOG00000029788)	TEPSIN (ENSGMOG00000013093)	ndufaf8 (ENSGMOG00000027123)
Protacanthopterygii	ANCESTRAL SPECIES	54	ENSGT00940000154959	ENSGT00390000006695.m	ENSGT01030000234586.A.a.a.a	ENSGT00390000016438	ENSGT00390000017328.a.b	ENSGT00940000164208	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j	ENSGT00940000155348.B.d	ENSGT00940000167052	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079.a	ENSGT00650000094974.b	ENSGT00940000157744.d #25
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	794																ENSGT00940000158951.e.c #22	ENSGT00940000165079.a.b	ENSGT00650000094974.b.c	ENSGT00940000157744.d.e #25	ENSGT00940000155111.vb.b	ENSGT00940000160317.h	ENSGT00940000157186.c.c	ENSGT00390000004495.l	ENSGT00940000154078.a.a.a.d
Salmoninae_a	ANCESTRAL SPECIES	86	ENSGT00940000159110.a.j.a	ENSGT00940000163157.a.a	ENSGT00940000158125.a.g	ENSGT00950000183213.a.a.b.c	ENSGT00390000004566.f	ENSGT00940000154944.x	ENSGT00390000006695.m	ENSGT01030000234586.A.a.a.a.d	ENSGT00390000016438.jb.a	ENSGT00940000164208.c	ENSGT00940000163149.a.a.b.c.b.b	ENSGT00940000165576.a.b.f.a.a	ENSGT00940000160643.j.a	ENSGT00940000155348.B.d.d	ENSGT00940000163600.o	ENSGT00940000158951.e.c #22	ENSGT00940000165079.a.b	ENSGT00650000094974.b.c	ENSGT00940000157744.d.e #25	ENSGT00940000155111.vb.b	ENSGT00940000160317.h	ENSGT00940000157186.c.c	ENSGT00970000196788.G	ENSGT00390000004495.l	ENSGT00940000154078.a.a.a.d	ENSGT00940000164511.C.k.a.b	ENSGT00940000164903.a.e.b	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000160261.h.b	ENSGT00940000156355.n.b.b	ENSGT00390000001260.e
Salmo	ANCESTRAL SPECIES	78	ENSGT00940000163157.a.a	ENSGT00940000158125.a.g	ENSGT00950000183213.a.a.b.c	ENSGT00390000004566.f	ENSGT00390000008812.b.b.a.b.a	ENSGT00940000154944.x	ENSGT00390000006695.m	ENSGT01030000234586.A.a.a.a.d	ENSGT00390000016438.jb.a	ENSGT00940000164208.c	ENSGT00940000163149.a.a.b.c.b.b	ENSGT00940000165576.a.b.f.a.a	ENSGT00940000160643.j.a	ENSGT00940000155348.B.d.d	ENSGT00940000163600.o	ENSGT00940000158951.e.c #22	ENSGT00940000165079.a.b	ENSGT00650000094974.b.c	ENSGT00940000157744.d.e #25	ENSGT00940000155111.vb.b	ENSGT00940000160317.h	ENSGT00940000157186.c.c	ENSGT00970000196788.G	ENSGT00390000004495.l	ENSGT00940000154078.a.a.a.d	ENSGT00940000164511.C.k.a.b	ENSGT00940000164903.a.e.b	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000160261.h.b	ENSGT00940000156355.n.b.b	ENSGT00390000001260.e
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000051442	ENSSSAG00000072237	ENSSSAG00000055104	ENSSSAG00000055128	ENSSSAG00000055144	ENSSSAG00000055169	lyrm1 (ENSSSAG00000055177)	ENSSSAG00000110482	ENSSSAG00000055207	ENSSSAG00000055333	ENSSSAG00000055336	ENSSSAG00000066193	ENSSSAG00000102730	ENSSSAG00000115984	ENSSSAG00000056126	dlx3b (ENSSSAG00000060327) #22	dlx4b (ENSSSAG00000105630)	KAT7 (ENSSSAG00000115485) #25	ENSSSAG00000060862	ENSSSAG00000060911	mfsd13a (ENSSSAG00000060936)	SEMA4G (ENSSSAG00000061057)	ENSSSAG00000112698	ENSSSAG00000063113	LZTS2 (ENSSSAG00000063123)	ENSSSAG00000063179	ENSSSAG00000063669	ENSSSAG00000063754	ENSSSAG00000105349	ENSSSAG00000065323	ENSSSAG00000065327
River trout	MODERN SPECIES	1	slc6a16b (ENSSTUG00000013145)	ENSSTUG00000013153	luc7l (ENSSTUG00000013161)	ENSSTUG00000013180	cdk5r1b (ENSSTUG00000013293)	dcun1d3 (ENSSTUG00000013301)	lyrm1 (ENSSTUG00000013308)	ENSSTUG00000013320	med24 (ENSSTUG00000013342)	ENSSTUG00000013592	ENSSTUG00000013596	ENSSTUG00000013606	ENSSTUG00000013658	mpp2b (ENSSTUG00000013668)	ENSSTUG00000013957	dlx3b (ENSSTUG00000014516) #22	dlx4b (ENSSTUG00000014526)	kat7b (ENSSTUG00000002061) #25	ENSSTUG00000004356	plekhm1 (ENSSTUG00000004373)	mfsd13a (ENSSTUG00000004408)	SEMA4G (ENSSTUG00000004453)	ENSSTUG00000004649	LZTS2 (ENSSTUG00000004661)	selenou1b (ENSSTUG00000004669)	ENSSTUG00000004691	ENSSTUG00000004704	PPFIA3 (ENSSTUG00000004765)	LRRC4B (ENSSTUG00000005890)	USP31 (ENSSTUG00000005899)	cog7 (ENSSTUG00000005934)
Oncorhynchus	ANCESTRAL SPECIES	63	ENSGT01000000220396	ENSGT00940000159110.a.j.a	ENSGT00940000158125.a.g	ENSGT00950000183213.a.a.b.c	ENSGT00390000004566.f	ENSGT00940000154944.x	ENSGT00390000006695.m	ENSGT01030000234586.A.a.a.a.d	ENSGT00390000016438.jb.a	ENSGT00940000164208.c	ENSGT00940000163149.a.a.b.c.b.b	ENSGT00940000165576.a.b.f.a.a	ENSGT00940000160643.j.a	ENSGT00940000155348.B.d.d	ENSGT00940000163600.o	ENSGT00940000158951.e.c #22	ENSGT00940000165079.a.b	ENSGT00650000094974.b.c	ENSGT00940000157744.d.e #25	ENSGT00940000155111.vb.b	ENSGT00940000160317.h	ENSGT00940000157186.c.c	ENSGT00970000196788.G	ENSGT00390000004495.l	ENSGT00940000154078.a.a.a.d	ENSGT00940000164511.C.k.a.b	ENSGT00940000164903.a.e.b	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000160261.h.b	ENSGT00940000156355.n.b.b	ENSGT00390000001260.e
Oncorhynchus_a	ANCESTRAL SPECIES	69	ENSGT00940000164729.a.b.c	ENSGT00940000159110.a.j.a	ENSGT00940000158125.a.g	ENSGT00950000183213.a.a.b.c	ENSGT00390000004566.f	ENSGT00940000154944.x	ENSGT00390000006695.m	ENSGT01030000234586.A.a.a.a.d	ENSGT00390000016438.jb.a	ENSGT00940000164208.c	ENSGT00940000163149.a.a.b.c.b.b	ENSGT00940000165576.a.b.f.a.a	ENSGT00940000160643.j.a	ENSGT00940000155348.B.d.d	ENSGT00940000163600.o	ENSGT00940000158951.e.c #22	ENSGT00940000165079.a.b	ENSGT00650000094974.b.c	ENSGT00940000157744.d.e #25	ENSGT00940000155111.vb.b	ENSGT00940000160317.h	ENSGT00940000157186.c.c	ENSGT00390000004495.l	ENSGT00940000154078.a.a.a.d	ENSGT00940000164511.C.k.a.b	ENSGT00940000164903.a.e.b	ENSGT01050000244900.a.b.f.b.n	ENSGT00940000160261.h.b	ENSGT00940000156355.n.b.b	ENSGT00390000001260.e	ENSGT00550000074873.ob.a.a.a.b
Coho salmon	MODERN SPECIES	17	ENSOKIG00005047658	ENSOKIG00005047653	LUC7L (ENSOKIG00005047650)	ENSOKIG00005047572	dcun1d3 (ENSOKIG00005047544)	lyrm1 (ENSOKIG00005047538)	ENSOKIG00005047533	ENSOKIG00005047529	med24 (ENSOKIG00005047339)	ENSOKIG00005047304	ENSOKIG00005047298	ENSOKIG00005047197	ENSOKIG00005047182	MPP2 (ENSOKIG00005047157)	ENSOKIG00005045722	dlx3b (ENSOKIG00005045624) #22	dlx4b (ENSOKIG00005045618)	ENSOKIG00005045602	kat7b (ENSOKIG00005044008) #25	ENSOKIG00005043869	mfsd13a (ENSOKIG00005043823)	SEMA4G (ENSOKIG00005043078)	ENSOKIG00005043019	LZTS2 (ENSOKIG00005043012)	ENSOKIG00005040324	ENSOKIG00005040103	PPFIA3 (ENSOKIG00005039714)	LRRC4B (ENSOKIG00005039656)	COG7 (ENSOKIG00005039438)	ATP6V0C (ENSOKIG00005039365)	TBC1D24 (ENSOKIG00005039344)
Chinook salmon	MODERN SPECIES	17	SLC17A7 (ENSOTSG00005044162)	ENSOTSG00005044142	luc7l (ENSOTSG00005044141)	KATNIP (ENSOTSG00005044137)	dcun1d3 (ENSOTSG00005044134)	lyrm1 (ENSOTSG00005044133)	ENSOTSG00005044131	med24 (ENSOTSG00005044026)	ENSOTSG00005044020	ENSOTSG00005044019	ENSOTSG00005044018	ENSOTSG00005043904	ENSOTSG00005043896	mpp2b (ENSOTSG00005043820)	ENSOTSG00005040963	dlx3b (ENSOTSG00005040918) #22	dlx4b (ENSOTSG00005040915)	ENSOTSG00005040914	ENSOTSG00005040913	kat7b (ENSOTSG00005035604) #25	plekhm1 (ENSOTSG00005035583)	mfsd13a (ENSOTSG00005043281)	SEMA4G (ENSOTSG00005043033)	ENSOTSG00005043032	LZTS2 (ENSOTSG00005043031)	ENSOTSG00005042775	ENSOTSG00005042773	PPFIA3 (ENSOTSG00005041475)	LRRC4B (ENSOTSG00005041467)	ENSOTSG00005041466	cog7 (ENSOTSG00005041460)
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000015427	ENSOMYG00000015376	dcun1d3 (ENSOMYG00000015352)	lyrm1 (ENSOMYG00000015344)	ENSOMYG00000015340	ENSOMYG00000015186	ENSOMYG00000015111	ENSOMYG00000061116	ENSOMYG00000015101	ENSOMYG00000070713	ENSOMYG00000056717	ENSOMYG00000014969	ENSOMYG00000014903	ENSOMYG00000014396	ENSOMYG00000011491	dlx3b (ENSOMYG00000011345) #22	dlx4b (ENSOMYG00000011327)	ENSOMYG00000011320	kat7b (ENSOMYG00000010365) #25	ENSOMYG00000010027	ENSOMYG00000075097	ENSOMYG00000068332	ENSOMYG00000049001	ENSOMYG00000009577	ENSOMYG00000009307	ENSOMYG00000071694	ENSOMYG00000009264	ENSOMYG00000021455	ENSOMYG00000009225	ENSOMYG00000050481	ENSOMYG00000008899
Huchen	MODERN SPECIES	628																dlx3b (ENSHHUG00000030735) #22	dlx4b (ENSHHUG00000030745)	ENSHHUG00000030751	kat7b (ENSHHUG00000030763) #25	plekhm1 (ENSHHUG00000030872)	aplnr2 (ENSHHUG00000030879)	mfsd13a (ENSHHUG00000030897)	SEMA4G (ENSHHUG00000030903)	ENSHHUG00000030914	LZTS2 (ENSHHUG00000030918)	selenou1b (ENSHHUG00000030926)	ENSHHUG00000030931	ENSHHUG00000031345	ENSHHUG00000031366	ENSHHUG00000031378	ENSHHUG00000031380
Salmoninae	ANCESTRAL SPECIES	23	ENSGT01030000234586.A.a.a.a.c	ENSGT00390000016438.jb.b	ENSGT00390000016438.kb	ENSGT00390000017328.a.b	ENSGT00940000164208.d	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.b.f.a.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j.b	ENSGT00940000155348.B.d.c	ENSGT00940000167052	ENSGT00940000163600.p	ENSGT00940000157746.e #21	ENSGT00940000158951.e.d #22	ENSGT00940000165079.a.a	ENSGT00650000094974.b.d	ENSGT00940000157744.d.f #25	ENSGT00940000155111.vb.a	ENSGT00940000160317.g	ENSGT00940000157186.c.d	ENSGT00390000015375	ENSGT00390000004495.k	ENSGT00940000154078.a.a.a.c	ENSGT00950000183002.C.c.b	ENSGT00940000165336.a.b	ENSGT01100000265829	ENSGT00940000165336.a.a.a	ENSGT00940000177233	ENSGT00940000167117
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.c	ENSGT00390000016438.jb.b	ENSGT00390000017328.a.b	ENSGT00940000164208.d	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.b.f.a.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j.b	ENSGT00940000155348.B.d.c	ENSGT00940000167052	ENSGT00940000163600.p	ENSGT00940000157746.e #21	ENSGT00940000158951.e.d #22	ENSGT00940000165079.a.a	ENSGT00650000094974.b.d	ENSGT00940000157744.d.f #25	ENSGT00940000155111.vb.a	ENSGT00940000160317.g	ENSGT00940000157186.c.d	ENSGT00390000015375	ENSGT00390000004495.k	ENSGT00940000154078.a.a.a.c	ENSGT01070000254256.c	ENSGT00950000183002.C.c.b	ENSGT00940000165336.a.b	ENSGT01100000265829	ENSGT00940000165336.a.a.a	ENSGT00940000177233
Salmo	ANCESTRAL SPECIES	3	ENSGT01030000234586.A.a.a.a.c	ENSGT00390000016438.jb.b	ENSGT00390000016438.kb	ENSGT00390000017328.a.b	ENSGT00940000164208.d	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.b.f.a.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j.b	ENSGT00940000155348.B.d.c	ENSGT00940000168654	ENSGT00940000163600.p	ENSGT00940000157746.e #21	ENSGT00940000158951.e.d #22	ENSGT00940000165079.a.a	ENSGT00650000094974.b.d	ENSGT00940000157744.d.f #25	ENSGT00940000155111.vb.a	ENSGT00940000160317.g	ENSGT00940000157186.c.d	ENSGT00390000015375	ENSGT00390000004495.k	ENSGT00940000154078.a.a.a.c	ENSGT01070000254256.c	ENSGT00950000183002.C.c.b	ENSGT00940000165336.a.b	ENSGT01100000265829	ENSGT00940000165336.a.a.a	ENSGT00940000167117
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000071863	ENSSSAG00000120716	ENSSSAG00000112600	ENSSSAG00000114148	ENSSSAG00000087403	ENSSSAG00000071784	ENSSSAG00000066721	ENSSSAG00000086185	ENSSSAG00000054685	ENSSSAG00000066170	tut1 (ENSSSAG00000066158)	ENSSSAG00000064232	ENSSSAG00000108930 #34	ENSSSAG00000054045	itga3b (ENSSSAG00000053873) #21	dlx3b (ENSSSAG00000053863) #22	dlx4b (ENSSSAG00000053856)	ENSSSAG00000110554	kat7b (ENSSSAG00000082572) #25	ENSSSAG00000051679	mfsd13a (ENSSSAG00000051664)	sema4g (ENSSSAG00000051399)	RM43 (ENSSSAG00000051379)	LZTS2 (ENSSSAG00000051362)	ENSSSAG00000051337	ENSSSAG00000116885	ENSSSAG00000051297	ENSSSAG00000049793	ENSSSAG00000049756	ENSSSAG00000104628	ENSSSAG00000049312
River trout	MODERN SPECIES	11	ENSSTUG00000010244	ENSSTUG00000010237	ENSSTUG00000010230	ENSSTUG00000010217	ENSSTUG00000010208	top2a (ENSSTUG00000004672)	GJD3 (ENSSTUG00000004521)	ENSSTUG00000004440	mki67 (ENSSTUG00000004378)	tut1 (ENSSTUG00000004362)	pyyb (ENSSTUG00000004350)	mpp2b (ENSSTUG00000002516)	ENSSTUG00000002474	ENSSTUG00000002052	itga3b (ENSSTUG00000002013) #21	dlx3b (ENSSTUG00000001996) #22	dlx4b (ENSSTUG00000001989)	ENSSTUG00000001979	kat7b (ENSSTUG00000001374) #25	plekhm1 (ENSSTUG00000001323)	mfsd13a (ENSSTUG00000001308)	SEMA4G (ENSSTUG00000001220)	mrpl43 (ENSSTUG00000001207)	twnk (ENSSTUG00000001198)	ENSSTUG00000001194	LZTS2 (ENSSTUG00000001187)	ENSSTUG00000001180	PDZD7 (ENSSTUG00000001149)	ENSSTUG00000001145	selenou1b (ENSSTUG00000001142)	ENSSTUG00000001137
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000154959	ENSGT01030000234586.A.a.a.a.c	ENSGT00390000016438.jb.b	ENSGT00390000017328.a.b	ENSGT00940000164208.d	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.b.f.a.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j.b	ENSGT00940000155348.B.d.c	ENSGT00940000167052	ENSGT00940000163600.p	ENSGT00940000157746.e #21	ENSGT00940000158951.e.d #22	ENSGT00940000165079.a.a	ENSGT00650000094974.b.d	ENSGT00940000157744.d.f #25	ENSGT00940000155111.vb.a	ENSGT00940000160317.g	ENSGT00940000157186.c.d	ENSGT00390000015375	ENSGT00390000004495.k	ENSGT00940000154078.a.a.a.c	ENSGT01070000254256.c	ENSGT00950000183002.C.c.b	ENSGT00940000165336.a.b	ENSGT01100000265829	ENSGT00940000164872.a	ENSGT00940000165336.a.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT01030000234586.A.a.a.a.c	ENSGT00390000016438.jb.b	ENSGT00390000017328.a.b	ENSGT00940000164208.d	ENSGT00940000157539	ENSGT01090000260005.a.b.a.a	ENSGT00940000165576.a.b.f.a.b	ENSGT00940000154352.A	ENSGT00940000159914	ENSGT00940000160643.j.b	ENSGT00940000155348.B.d.c	ENSGT00940000154811.A.n	ENSGT00940000168654	ENSGT00940000163600.p	ENSGT00940000157746.e #21	ENSGT00940000158951.e.d #22	ENSGT00940000165079.a.a	ENSGT00650000094974.b.d	ENSGT00940000157744.d.f #25	ENSGT00940000155111.vb.a	ENSGT00940000160317.g	ENSGT00940000157186.c.d	ENSGT00390000015375	ENSGT00390000004495.k	ENSGT00940000154078.a.a.a.c	ENSGT01070000254256.c	ENSGT00950000183002.C.c.b	ENSGT00940000165336.a.b	ENSGT01100000265829	ENSGT00940000165336.a.a.a	ENSGT00940000177233
Coho salmon	MODERN SPECIES	12	DNAH3 (ENSOKIG00005018422)	ENSOKIG00005018242	ENSOKIG00005018179	ENSOKIG00005018145	ENSOKIG00005018140	top2a (ENSOKIG00005014247)	GJD3 (ENSOKIG00005014072)	ENSOKIG00005013985	mki67 (ENSOKIG00005013958)	tut1 (ENSOKIG00005013942)	pyyb (ENSOKIG00005013937)	mpp2b (ENSOKIG00005013089)	ENSOKIG00005019894	ENSOKIG00005018150	itga3b (ENSOKIG00005018018) #21	dlx3b (ENSOKIG00005018002) #22	dlx4b (ENSOKIG00005017996)	ENSOKIG00005017986	kat7b (ENSOKIG00005017659) #25	plekhm1 (ENSOKIG00005017621)	mfsd13a (ENSOKIG00005017600)	SEMA4G (ENSOKIG00005017564)	twnk (ENSOKIG00005017555)	LZTS2 (ENSOKIG00005017547)	ENSOKIG00005017539	PDZD7 (ENSOKIG00005017531)	ENSOKIG00005017521	ENSOKIG00005017512	selenou1b (ENSOKIG00005017497)	ENSOKIG00005017479	ENSOKIG00005017422
Chinook salmon	MODERN SPECIES	16	ENSOTSG00005045671	ENSOTSG00005045670	ENSOTSG00005045669	ENSOTSG00005045667	ENSOTSG00005045666	top2a (ENSOTSG00005043286)	GJD3 (ENSOTSG00005043266)	ENSOTSG00005043250	mki67 (ENSOTSG00005043243)	tut1 (ENSOTSG00005043239)	pyyb (ENSOTSG00005043238)	mpp2b (ENSOTSG00005042157)	ENSOTSG00005042148	ENSOTSG00005042082	itga3b (ENSOTSG00005042077) #21	dlx3b (ENSOTSG00005042075) #22	dlx4b (ENSOTSG00005042073)	ENSOTSG00005042070	kat7b (ENSOTSG00005041646) #25	plekhm1 (ENSOTSG00005041627)	mfsd13a (ENSOTSG00005041623)	mrpl43 (ENSOTSG00005041620)	twnk (ENSOTSG00005041619)	LZTS2 (ENSOTSG00005041618)	ENSOTSG00005041617	PDZD7 (ENSOTSG00005041616)	ENSOTSG00005041614	selenou1b (ENSOTSG00005041613)	ENSOTSG00005041611	ENSOTSG00005041610	ENSOTSG00005041608
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000071277	ENSOMYG00000017297	ENSOMYG00000017291	ENSOMYG00000017276	ENSOMYG00000074840	ENSOMYG00000011026	ENSOMYG00000010221	ENSOMYG00000010146	mki67 (ENSOMYG00000048244)	tut1 (ENSOMYG00000010040)	pyyb (ENSOMYG00000010030)	mpp2b (ENSOMYG00000009901)	ENSOMYG00000055408	ENSOMYG00000009595	itga3b (ENSOMYG00000009385) #21	dlx3b (ENSOMYG00000009308) #22	dlx4b (ENSOMYG00000009273)	ENSOMYG00000071311	ENSOMYG00000009252	kat7b (ENSOMYG00000009046) #25	ENSOMYG00000008820	mfsd13a (ENSOMYG00000008788)	SEMA4G (ENSOMYG00000008591)	RM43 (ENSOMYG00000008425)	twnk (ENSOMYG00000008412)	LZTS2 (ENSOMYG00000008395)	ENSOMYG00000008373	PDZD7 (ENSOMYG00000008358)	ENSOMYG00000008322	ENSOMYG00000008305	ENSOMYG00000057843
Huchen	MODERN SPECIES	15	ENSHHUG00000042126	ENSHHUG00000042116	ENSHHUG00000042113	ENSHHUG00000042108	ENSHHUG00000042103	top2a (ENSHHUG00000041153)	ENSHHUG00000041097	mki67 (ENSHHUG00000041087)	ENSHHUG00000041084	tut1 (ENSHHUG00000041078)	pyyb (ENSHHUG00000041074)	mpp2b (ENSHHUG00000040931)	ENSHHUG00000040912	ENSHHUG00000040828	itga3b (ENSHHUG00000040803) #21	dlx3b (ENSHHUG00000040790) #22	dlx4b (ENSHHUG00000040782)	ENSHHUG00000040779	kat7b (ENSHHUG00000040570) #25	plekhm1 (ENSHHUG00000040557)	mfsd13a (ENSHHUG00000040541)	SEMA4G (ENSHHUG00000040506)	mrpl43 (ENSHHUG00000040483)	twnk (ENSHHUG00000040480)	LZTS2 (ENSHHUG00000040476)	PDZD7 (ENSHHUG00000040470)	ENSHHUG00000040465	ENSHHUG00000040446	ENSHHUG00000040433	ENSHHUG00000040261	ENSHHUG00000040258
Northern pike	MODERN SPECIES	4	DNAH3 (ENSELUG00000001478)	ENSELUG00000010960	med24 (ENSELUG00000011080)	ENSELUG00000011117	ENSELUG00000000397	top2a (ENSELUG00000011305)	GJD3 (ENSELUG00000011365)	ENSELUG00000011435	mki67 (ENSELUG00000011512)	tut1 (ENSELUG00000011532)	pyyb (ENSELUG00000011536)	mpp2b (ENSELUG00000011637)	ENSELUG00000011728	ENSELUG00000011851	itga3b (ENSELUG00000011922) #21	dlx3b (ENSELUG00000011948) #22	dlx4b (ENSELUG00000011968)	ENSELUG00000011981	ENSELUG00000012032	plekhm1 (ENSELUG00000012064)	ENSELUG00000032812	ENSELUG00000034413	KCNK12 (ENSELUG00000012112)	GOLGA4 (ENSELUG00000012185)	ENSELUG00000030092	itga9 (ENSELUG00000026895)	ZC3H6 (ENSELUG00000012256)	ENSELUG00000012290	TMEM87B (ENSELUG00000000459)	MERTK (ENSELUG00000012415)	ENSELUG00000012425
Osteoglossiformes	ANCESTRAL SPECIES	43	ENSGT00390000005672.a.a #16	ENSGT00940000160279 #19	ENSGT00390000016438	ENSGT00390000017328	ENSGT00940000153653.a.a.a	ENSGT00940000164208	ENSGT00940000157539	ENSGT00940000165576.a.b	ENSGT00390000018386	ENSGT00940000159914	ENSGT00940000160643	ENSGT00940000155348.B.d	ENSGT00940000154811.A	ENSGT00940000163600	ENSGT00940000157746.e #21	ENSGT00940000158951.e #22	ENSGT00940000165079	ENSGT00650000094974	ENSGT00940000157744 #25	ENSGT00940000163448	ENSGT00940000156241	ENSGT00950000183150.a.a.a.c	ENSGT00950000183150.a.a.b	ENSGT00950000183207.b	ENSGT00950000183098.a.b	ENSGT00390000016335.h	ENSGT00940000166248.a	ENSGT00940000161341.a.a	ENSGT00940000154152.b.b	ENSGT00940000162682.B	ENSGT00390000014900.b.b.b
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	32																ENSSFOG00015015813 #22
Asian bonytongue	MODERN SPECIES	15															ENSSFOG00015024745	ENSSFOG00015027251 #22	ENSSFOG00015025087 #22	ASTE1 (ENSSFOG00015023745)	ENSSFOG00015023714	ENSSFOG00015023689	mrpl3 (ENSSFOG00015023683)	CPNE4 (ENSSFOG00015023677)	ENSSFOG00015024899	ENSSFOG00015019904	dync1li1 (ENSSFOG00015023670)	ENSSFOG00015027431	CMTM7 (ENSSFOG00015032282)	ctnnb1 (ENSSFOG00015019803)	ENSSFOG00015019711	ccka (ENSSFOG00015019680)	ENSSFOG00015019668
Asian bonytongue	MODERN SPECIES	20	pcsk1 (ENSSFOG00015018312)	ENSSFOG00015028137	MYORG (ENSSFOG00015026192)	ENSSFOG00015024293	tpgs2 (ENSSFOG00015022563)	zgc:64106 (ENSSFOG00015022576)	ENSSFOG00015022638	ubap1 (ENSSFOG00015022641)	nudt2 (ENSSFOG00015028450)	ENSSFOG00015030379	ENSSFOG00015018598	SDR42E2 (ENSSFOG00015010073)	ENSSFOG00015032860 #22	SRSF1 (ENSSFOG00015025942)	ENSSFOG00015027473	ENSSFOG00015026808 #22	THSD4 (ENSSFOG00015023344)	ENSSFOG00015023287	larp6a (ENSSFOG00015028721)	tm2d3 (ENSSFOG00015025263)	ENSSFOG00015017057	ulk3 (ENSSFOG00015017018)	ENSSFOG00015024692	cplx3a (ENSSFOG00015016994)	csk (ENSSFOG00015016959)	edc3 (ENSSFOG00015028440)	cyp1a (ENSSFOG00015016922)	ENSSFOG00015016912	ENSSFOG00015032142	ENSSFOG00015024959	ENSSFOG00015033055
Asian bonytongue	MODERN SPECIES	20	gnrh2 (ENSSFOG00015018387)	cd8a (ENSSFOG00015018371)	ENSSFOG00015032844	pcsk1 (ENSSFOG00015018312)	ENSSFOG00015028137	MYORG (ENSSFOG00015026192)	ENSSFOG00015024293	tpgs2 (ENSSFOG00015022563)	zgc:64106 (ENSSFOG00015022576)	ENSSFOG00015022638	ubap1 (ENSSFOG00015022641)	nudt2 (ENSSFOG00015028450)	ENSSFOG00015030379	ENSSFOG00015018598	SDR42E2 (ENSSFOG00015010073)	ENSSFOG00015032860 #22	SRSF1 (ENSSFOG00015025942)	ENSSFOG00015027473	ENSSFOG00015026808 #22	THSD4 (ENSSFOG00015023344)	ENSSFOG00015023287	larp6a (ENSSFOG00015028721)	tm2d3 (ENSSFOG00015025263)	ENSSFOG00015017057	ulk3 (ENSSFOG00015017018)	ENSSFOG00015024692	cplx3a (ENSSFOG00015016994)	csk (ENSSFOG00015016959)	edc3 (ENSSFOG00015028440)	cyp1a (ENSSFOG00015016922)	ENSSFOG00015016912
Asian bonytongue	MODERN SPECIES	8	mafaa (ENSSFOG00015031154)	RNF31 (ENSSFOG00015014539)	psme2 (ENSSFOG00015014509)	kbtbd2 (ENSSFOG00015032100)	buc (ENSSFOG00015014484)	ENSSFOG00015014461	CDH20 (ENSSFOG00015014425)	gad3 (ENSSFOG00015014406)	zgc:56556 (ENSSFOG00015014352)	ENSSFOG00015028890	ENSSFOG00015024999	cdh6 (ENSSFOG00015014328)	ENSSFOG00015014314	ENSSFOG00015028901	ENSSFOG00015032796	ENSSFOG00015031619 #22
Asian bonytongue	MODERN SPECIES	15	fam210aa (ENSSFOG00015019627)	ENSSFOG00015019668	ccka (ENSSFOG00015019680)	ENSSFOG00015019711	ctnnb1 (ENSSFOG00015019803)	CMTM7 (ENSSFOG00015032282)	ENSSFOG00015027431	dync1li1 (ENSSFOG00015023670)	ENSSFOG00015019904	ENSSFOG00015024899	CPNE4 (ENSSFOG00015023677)	mrpl3 (ENSSFOG00015023683)	ENSSFOG00015023689	ENSSFOG00015023714	ASTE1 (ENSSFOG00015023745)	ENSSFOG00015025087 #22	ENSSFOG00015027251 #22	ENSSFOG00015024745
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	61															ENSSFOG00015026278	ENSSFOG00015028055 #22
Asian bonytongue	MODERN SPECIES	16								rab3ip (ENSSFOG00015015605)	BEST3 (ENSSFOG00015031655)	nots (ENSSFOG00015015639)	ENSSFOG00015015660	cct2 (ENSSFOG00015015673)	frs2a (ENSSFOG00015015749)	yeats4 (ENSSFOG00015027415)	CPSF6 (ENSSFOG00015015803)	ENSSFOG00015031472 #22	cpm (ENSSFOG00015015823)	ENSSFOG00015015847	arhgef39 (ENSSFOG00015015883)	LMO3 (ENSSFOG00015015894)	mgst1.1 (ENSSFOG00015015909)	SLC15A5 (ENSSFOG00015015960)	dera (ENSSFOG00015016021)	ENSSFOG00015025220	msrb3 (ENSSFOG00015016152)	lemd3 (ENSSFOG00015030272)	wif1 (ENSSFOG00015016205)	tmbim4 (ENSSFOG00015016235)	b2m (ENSSFOG00015016254)	HELB (ENSSFOG00015016267)	GRIP1 (ENSSFOG00015016385)
Asian bonytongue	MODERN SPECIES	40																ENSSFOG00015032971 #22	ENSSFOG00015032346	ENSSFOG00015031583	ENSSFOG00015027105	ENSSFOG00015028452	ENSSFOG00015028739	ENSSFOG00015033262
Asian bonytongue	MODERN SPECIES	17													ENSSFOG00015031627	ENSSFOG00015028168	ENSSFOG00015032201	dlx3b (ENSSFOG00015030338) #22	dlx4b (ENSSFOG00015009114)	ENSSFOG00015009093	kat7b (ENSSFOG00015008976) #25	ptges3l (ENSSFOG00015008932)	aarsd1 (ENSSFOG00015008880)	g6pc1a.1 (ENSSFOG00015008872)	g6pc1a.2 (ENSSFOG00015027300)	ENSSFOG00015024966	aoc2 (ENSSFOG00015008829)	psme3 (ENSSFOG00015026184)	nbr1a (ENSSFOG00015008795)	tmem106a (ENSSFOG00015008781)	arl4d (ENSSFOG00015008747)	ENSSFOG00015026663	ENSSFOG00015008693
P. kingsleyae	MODERN SPECIES	181	GSPT1 (ENSPKIG00000022644)	NTAN1 (ENSPKIG00000022597)	pdxdc1 (ENSPKIG00000022530)	psmd3 (ENSPKIG00000022477)	ENSPKIG00000022449	top2a (ENSPKIG00000022362)	GJD3 (ENSPKIG00000022315)	ENSPKIG00000022295	rarab (ENSPKIG00000022206)	ndc80 (ENSPKIG00000022149)	tut1 (ENSPKIG00000022062)	pyya (ENSPKIG00000022007)	mpp2b (ENSPKIG00000021923)	ENSPKIG00000021793	itga3b (ENSPKIG00000021663) #21	dlx3b (ENSPKIG00000021616) #22	dlx4b (ENSPKIG00000021603)	ENSPKIG00000021578	kat7b (ENSPKIG00000021511) #25	csf3a (ENSPKIG00000021465)	med24 (ENSPKIG00000021411)	SAMD14 (ENSPKIG00000021388) #19	ENSPKIG00000021367	ENSPKIG00000021334	PPP1R9B (ENSPKIG00000021274) #18	SGCA (ENSPKIG00000021231) #16	col1a1b (ENSPKIG00000021151) #15	retsatl (ENSPKIG00000021116)	gngt2a (ENSPKIG00000021106) #35	TMEM101 (ENSPKIG00000021086)	lsm12b (ENSPKIG00000021058)
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000158951.f #22
Clupeocephala	ANCESTRAL SPECIES	5	ENSGT00940000158410.h	ENSGT00940000157015.j	ENSGT00390000018397	ENSGT01000000214430	ENSGT00940000171795	ENSGT00510000050089.b	ENSGT00950000182860.a.a.a.ub.a	ENSGT01000000215678	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000154811.A	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i	ENSGT01050000245366	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b
Otomorpha	ANCESTRAL SPECIES	358								ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT00940000155223.a.a	ENSGT00940000157746.f #21	ENSGT00390000008812.b.b.b	ENSGT00530000063301.a.a.d	ENSGT00530000064085.d	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b
Clupeiformes	ANCESTRAL SPECIES	213	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00940000154811.A	ENSGT00530000063991.a	ENSGT00390000004038	ENSGT00390000003628.a.b	ENSGT00940000166711	ENSGT00390000004690.a.a	ENSGT00940000155223.a.a	ENSGT00940000157746.f #21	ENSGT00390000008812.b.b.b	ENSGT00530000063301.a.a.d	ENSGT00530000064085.d	ENSGT00940000157917.a.a	ENSGT00940000162682.B.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00950000183150.a.a.a.d	ENSGT00950000183207.b	ENSGT00950000183098.a.a.a	ENSGT00390000016335.g	ENSGT00940000166248.b	ENSGT00940000161341.a.b	ENSGT00940000154507.t
Atlantic herring	MODERN SPECIES		rpl23 (ENSCHAG00000003462)	ENSCHAG00000003686	smarce1 (ENSCHAG00000003698)	kif2c (ENSCHAG00000003855)	ccdc103 (ENSCHAG00000004096)	FAM187A (ENSCHAG00000004112)	abi3a (ENSCHAG00000004138)	ENSCHAG00000004183	mpp2a (ENSCHAG00000004293)	pyya (ENSCHAG00000006180)	ENSCHAG00000006209	rarab (ENSCHAG00000006222)	ENSCHAG00000006487	ENSCHAG00000006498	dusp3b (ENSCHAG00000006511)	DLX3 (ENSCHAG00000006520) #22	dlx4a (ENSCHAG00000006600)	ENSCHAG00000006630	KAT7 (ENSCHAG00000006721) #25	G6PC1 (ENSCHAG00000008572)	aoc2 (ENSCHAG00000008581)	PSME3 (ENSCHAG00000008598)	ENSCHAG00000008794	ENSCHAG00000008827	ARL4D (ENSCHAG00000008844)	ENSCHAG00000008861	RTN4R (ENSCHAG00000008872)	rab11fip4a (ENSCHAG00000008893)	coil (ENSCHAG00000009249)	scpep1 (ENSCHAG00000009274)	engase (ENSCHAG00000010143)
Denticle herring	MODERN SPECIES	17	mpp2a (ENSDCDG00000018379)	ENSDCDG00000018360	abi3a (ENSDCDG00000018353)	FAM187A (ENSDCDG00000018347)	ccdc103 (ENSDCDG00000018343)	smarce1 (ENSDCDG00000018337)	ENSDCDG00000018333	rpl23 (ENSDCDG00000018328)	CA10 (ENSDCDG00000018204)	ENSDCDG00000018183 #21	cdk5r1a (ENSDCDG00000018178)	psmd11a (ENSDCDG00000017299)	nsfa (ENSDCDG00000015372)	THRA (ENSDCDG00000015154)	dusp3b (ENSDCDG00000015097)	ENSDCDG00000015093 #22	dlx4a (ENSDCDG00000015090)	ENSDCDG00000015082	KAT7 (ENSDCDG00000014057) #25	G6PC1 (ENSDCDG00000027372)	aoc2 (ENSDCDG00000027370)	PSME3 (ENSDCDG00000027368)	NBR1 (ENSDCDG00000027365)	ENSDCDG00000027364	ARL4D (ENSDCDG00000027363)	ENSDCDG00000027361	cd2bp2 (ENSDCDG00000027360)	ENSDCDG00000027357	rusf1 (ENSDCDG00000027337)	ENSDCDG00000027333	ENSDCDG00000027331
Euteleosteomorpha	ANCESTRAL SPECIES	159	ENSGT01100000263614	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00940000160292	ENSGT00940000153222.a.b.a	ENSGT00940000154700	ENSGT00950000182838.A.a.a	ENSGT00940000167194	ENSGT00940000160972	ENSGT00940000158268.b	ENSGT00440000037417.B.a	ENSGT00390000014700.b.a.b.b.a	ENSGT00950000183205.b.a.b.a.a	ENSGT00940000158693.A	ENSGT00990000207765	ENSGT01040000240919	ENSGT00390000015505
Acanthomorphata	ANCESTRAL SPECIES	232			ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b
Euacanthomorphacea	ANCESTRAL SPECIES	118		ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000156584.e.b #15	ENSGT00940000174909	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000159997	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00390000003628.a.b
Tiger tail seahorse	MODERN SPECIES	338												nsfa (ENSHCOG00000009674)	cdk5r1a (ENSHCOG00000009684)	rpain (ENSHCOG00000009690)	PSMD11 (ENSHCOG00000009712)	DLX3 (ENSHCOG00000009721) #22	ENSHCOG00000000580	nags (ENSHCOG00000009836)	ENSHCOG00000009867	col1a1a (ENSHCOG00000000752) #15	smg1 (ENSHCOG00000010132)	fbxl16 (ENSHCOG00000010182)	ABCC1 (ENSHCOG00000010243)	ENSHCOG00000010253	snrnp70 (ENSHCOG00000010270)	lin7b (ENSHCOG00000010299)	hao1 (ENSHCOG00000010339)	ENSHCOG00000010355	pex12 (ENSHCOG00000010407)	HDAC5 (ENSHCOG00000010467)	cyb561 (ENSHCOG00000010499)
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000159997	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000159997	ENSGT00940000168246	ENSGT00940000160643.i
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000165576.a.b	ENSGT00940000159997	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785	ENSGT00940000168246
Carangaria	ANCESTRAL SPECIES	4	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00980000198722	ENSGT00940000164625.o.b.a.b	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000159997	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000165576.a.b	ENSGT00940000159997	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c
Turbot	MODERN SPECIES	10	aldh16a1 (ENSSMAG00000017940)	ENSSMAG00000027834	syt5a (ENSSMAG00000017896)	tnnt1 (ENSSMAG00000017882)	pih1d1 (ENSSMAG00000017873)	ENSSMAG00000017839	ENSSMAG00000001103	ENSSMAG00000017780	prl (ENSSMAG00000017763)	ENSSMAG00000037864	ENSSMAG00000017730	ENSSMAG00000017696	ENSSMAG00000031015	ENSSMAG00000017671	ENSSMAG00000017634	ENSSMAG00000036838 #22	ENSSMAG00000017604	ENSSMAG00000017590	ENSSMAG00000025161	ENSSMAG00000017480 #15	ENSSMAG00000017412	ENSSMAG00000017402	ENSSMAG00000017392	ENSSMAG00000017319	cyb561 (ENSSMAG00000017285)	ENSSMAG00000034880	ENSSMAG00000017154	rarab (ENSSMAG00000017131)	ENSSMAG00000017113	ENSSMAG00000035162	ENSSMAG00000017097
Tongue sole	MODERN SPECIES	8	hoxb1a (ENSCSEG00000012675)	hoxb2a (ENSCSEG00000012699)	hoxb3a (ENSCSEG00000012710)	hoxb4a (ENSCSEG00000012720)	ENSCSEG00000012724	hoxb8a (ENSCSEG00000012733)	hoxb9a (ENSCSEG00000012735)	eve1 (ENSCSEG00000012743)	hoxb13a (ENSCSEG00000012749)	ENSCSEG00000012766	zgc:158403 (ENSCSEG00000012776)	tspan35 (ENSCSEG00000012782)	ZNF653 (ENSCSEG00000012787)	rpain (ENSCSEG00000012792)	PSMD11 (ENSCSEG00000012804)	DLX3 (ENSCSEG00000012819) #22	ENSCSEG00000012821	nags (ENSCSEG00000012835)	coa3b (ENSCSEG00000012849)	col1a1a (ENSCSEG00000012919) #15	ENSCSEG00000013423	pyya (ENSCSEG00000013429)	ENSCSEG00000013433	RARA (ENSCSEG00000013437)	ENSCSEG00000013441	ENSCSEG00000013447	ENSCSEG00000013452	cyb561 (ENSCSEG00000013459)	HDAC5 (ENSCSEG00000013473)	pex12 (ENSCSEG00000013515)	ENSCSEG00000013524
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000177154	ENSGT00970000198135	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000159997	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785	ENSGT00940000168246	ENSGT00940000160643.i
Barramundi perch	MODERN SPECIES	435							ENSLCAG00010018294	ENSLCAG00010018168	prl (ENSLCAG00010018133)	dusp3b (ENSLCAG00010018132)	thraa (ENSLCAG00010018125)	nsfa (ENSLCAG00010017941)	cdk5r1a (ENSLCAG00010017907)	rpain (ENSLCAG00010017903)	PSMD11 (ENSLCAG00010017874)	DLX3 (ENSLCAG00010017862) #22	ENSLCAG00010017861	nags (ENSLCAG00010017859)
Seriola	ANCESTRAL SPECIES	23	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT00940000164286.j.b.a.a.a	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i	ENSGT00940000168246	ENSGT01030000234785	ENSGT00950000183145.B.a.b.c	ENSGT00940000159997	ENSGT00940000156447.a.b	ENSGT00950000183197.a	ENSGT00940000160534
Yellowtail amberjack	MODERN SPECIES	2955	aldh16a1 (ENSSLDG00000015707)	fthl31 (ENSSLDG00000015658)	syt5a (ENSSLDG00000015628)	tnnt1 (ENSSLDG00000015604)	pih1d1 (ENSSLDG00000015582)	ENSSLDG00000015534	ENSSLDG00000015474	si:dkey-16p21.8 (ENSSLDG00000015459)	prl (ENSSLDG00000014273)	dusp3b (ENSSLDG00000013974)	thraa (ENSSLDG00000013953)	nsfa (ENSSLDG00000013833)	cdk5r1a (ENSSLDG00000013777)	rpain (ENSSLDG00000013756)	PSMD11 (ENSSLDG00000013717)	DLX3 (ENSSLDG00000013683) #22	ENSSLDG00000013663	ENSSLDG00000013653	ENSSLDG00000013635	rpl23 (ENSSLDG00000013573)	ENSSLDG00000013555	smarce1 (ENSSLDG00000013531)	ENSSLDG00000013513	ENSSLDG00000013486	mpp2a (ENSSLDG00000013449)	pyya (ENSSLDG00000013426)	ENSSLDG00000013406	ENSSLDG00000013393	ENSSLDG00000013369	RARA (ENSSLDG00000013339)	TANC2 (ENSSLDG00000012929)
Greater amberjack	MODERN SPECIES	50	aldh16a1 (ENSSDUG00000007340)	fthl31 (ENSSDUG00000007323)	syt5a (ENSSDUG00000007236)	tnnt1 (ENSSDUG00000007148)	pih1d1 (ENSSDUG00000007123)	ENSSDUG00000007071	ENSSDUG00000007024	si:dkey-16p21.8 (ENSSDUG00000007015)	prl (ENSSDUG00000006996)	dusp3b (ENSSDUG00000006978)	thraa (ENSSDUG00000006951)	nsfa (ENSSDUG00000006845)	cdk5r1a (ENSSDUG00000006827)	rpain (ENSSDUG00000006821)	PSMD11 (ENSSDUG00000006787)	DLX3 (ENSSDUG00000006765) #22	ENSSDUG00000006757	ENSSDUG00000006740	rpl23 (ENSSDUG00000006698)	ENSSDUG00000006658	smarce1 (ENSSDUG00000006627)	ENSSDUG00000006614	ENSSDUG00000006592	mpp2a (ENSSDUG00000006569)	pyya (ENSSDUG00000006560)	ENSSDUG00000006557	ENSSDUG00000006550	ENSSDUG00000006537	RARA (ENSSDUG00000006498)	ENSSDUG00000006484	TANC2 (ENSSDUG00000006452)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000165576.a.b	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000017008 #25	ENSMAMG00000017076	ENSMAMG00000017104	syt5a (ENSMAMG00000017152)	tnnt1 (ENSMAMG00000017171)	pih1d1 (ENSMAMG00000017192)	ENSMAMG00000017238	ENSMAMG00000017315	prl (ENSMAMG00000017357)	ENSMAMG00000017365	ENSMAMG00000017402	ENSMAMG00000024678	ENSMAMG00000017422	ENSMAMG00000017466	ENSMAMG00000017496	ENSMAMG00000017532 #22	ENSMAMG00000017542	ENSMAMG00000017550	ENSMAMG00000017557	ENSMAMG00000017579	ENSMAMG00000028217	ENSMAMG00000017590	ENSMAMG00000017598	ENSMAMG00000024437	ENSMAMG00000025220	ENSMAMG00000017633	ENSMAMG00000024527	ENSMAMG00000025844	JMJD6 (ENSMAMG00000017683)	ENSMAMG00000017691	ENSMAMG00000017736
Anabantoidei	ANCESTRAL SPECIES	25	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.u	ENSGT00950000182841.a.v.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000163612	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000165576.a.b	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c
Climbing perch	MODERN SPECIES	21	ENSATEG00000015469	ENSATEG00000015447	ENSATEG00000012625	syt5a (ENSATEG00000012334)	tnnt1 (ENSATEG00000012281)	pih1d1 (ENSATEG00000012265)	ENSATEG00000012219	ENSATEG00000012149	prl (ENSATEG00000012113)	ENSATEG00000025272	ENSATEG00000012062	ENSATEG00000012004	ENSATEG00000011996	ENSATEG00000011989	ENSATEG00000011929	ENSATEG00000011914 #22	ENSATEG00000011897	ENSATEG00000011890	ENSATEG00000011778 #15	ENSATEG00000029173	ENSATEG00000011696	ENSATEG00000011672	ENSATEG00000011659	ENSATEG00000011624	cyb561 (ENSATEG00000011593)	ENSATEG00000011514	ENSATEG00000011486	ENSATEG00000011472	ENSATEG00000030018	ENSATEG00000026298	ENSATEG00000011392
Siamese fighting fish	MODERN SPECIES	19	ENSBSLG00000006454	tnnt1 (ENSBSLG00000006475)	pih1d1 (ENSBSLG00000006541)	ENSBSLG00000006772	ENSBSLG00000007085	prl (ENSBSLG00000007481)	DUSP3 (ENSBSLG00000007501)	thraa (ENSBSLG00000007938)	ENSBSLG00000008818	ENSBSLG00000008900	ENSBSLG00000008926	nsfa (ENSBSLG00000009092)	CDK5R1 (ENSBSLG00000010409)	rpain (ENSBSLG00000010417)	PSMD11 (ENSBSLG00000010706)	DLX3 (ENSBSLG00000010984) #22	dlx4a (ENSBSLG00000011067)	ENSBSLG00000011076	nags (ENSBSLG00000011679)	ENSBSLG00000011881	ENSBSLG00000012242 #15	pex12 (ENSBSLG00000017649)	ENSBSLG00000017656	HDAC5 (ENSBSLG00000017679)	ENSBSLG00000008228	cyb561 (ENSBSLG00000008238)	mpp2a (ENSBSLG00000008277)	pyya (ENSBSLG00000008698)	ENSBSLG00000008708	ENSBSLG00000008726
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b
Tetraodontidae	ANCESTRAL SPECIES	192												ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602
Fugu	DUPLICATION
Fugu	MODERN SPECIES	17	ENSTRUG00000028002	ENSTRUG00000030079	ENSTRUG00000027169	ENSTRUG00000032437	prl (ENSTRUG00000005607)	ENSTRUG00000005865	thraa (ENSTRUG00000005981)	nsfa (ENSTRUG00000006590)	cdk5r1a (ENSTRUG00000007028)	rpain (ENSTRUG00000007150)	PSMD11 (ENSTRUG00000007262)	DLX3 (ENSTRUG00000024182) #22	dlx4a (ENSTRUG00000025226)	ENSTRUG00000026264	rpain (ENSTRUG00000032064)	DLX3 (ENSTRUG00000032474) #22	nags (ENSTRUG00000007852)	ENSTRUG00000026727	ENSTRUG00000007901	aoc2 (ENSTRUG00000008235)	ENSTRUG00000032403	ENSTRUG00000008416	kcnc3a (ENSTRUG00000008518)	pdk2b (ENSTRUG00000008711) #20	ENSTRUG00000020232	GGA1 (ENSTRUG00000009076)	ENSTRUG00000009294	TMEM184B (ENSTRUG00000027470)	TMEM184B (ENSTRUG00000009770)	CSNK1E (ENSTRUG00000010037)	ENSTRUG00000010177
Fugu	MODERN SPECIES	17	nfixb (ENSTRUG00000022784)	GADD45GIP1 (ENSTRUG00000013786)	zgc:158403 (ENSTRUG00000013806)	col1a1a (ENSTRUG00000013913) #15	ENSTRUG00000028002	ENSTRUG00000030079	ENSTRUG00000027169	ENSTRUG00000032437	prl (ENSTRUG00000005607)	ENSTRUG00000005865	thraa (ENSTRUG00000005981)	nsfa (ENSTRUG00000006590)	cdk5r1a (ENSTRUG00000007028)	rpain (ENSTRUG00000007150)	PSMD11 (ENSTRUG00000007262)	DLX3 (ENSTRUG00000024182) #22	dlx4a (ENSTRUG00000025226)	ENSTRUG00000026264	rpain (ENSTRUG00000032064)	DLX3 (ENSTRUG00000032474) #22	nags (ENSTRUG00000007852)	ENSTRUG00000026727	ENSTRUG00000007901	aoc2 (ENSTRUG00000008235)	ENSTRUG00000032403	ENSTRUG00000008416	kcnc3a (ENSTRUG00000008518)	pdk2b (ENSTRUG00000008711) #20	ENSTRUG00000020232	GGA1 (ENSTRUG00000009076)	ENSTRUG00000009294
Tetraodon	MODERN SPECIES	26	dnase1 (ENSTNIG00000001098)	nat15 (ENSTNIG00000011151)	ENSTNIG00000011152	carhsp1 (ENSTNIG00000011153)	mpp2a (ENSTNIG00000011154)	pyya (ENSTNIG00000011155)	ENSTNIG00000011156	RARA (ENSTNIG00000011157)	nsfa (ENSTNIG00000011158)	prl (ENSTNIG00000011159)	DUSP3 (ENSTNIG00000011160)	CDK5R1 (ENSTNIG00000011161)	THRA (ENSTNIG00000011162)	rpain (ENSTNIG00000011163)	PSMD11 (ENSTNIG00000011164)	DLX3 (ENSTNIG00000011165) #22	dlx4a (ENSTNIG00000011166)	nags (ENSTNIG00000011167)	col1a1a (ENSTNIG00000011168) #15	zgc:158403 (ENSTNIG00000011169)	nfixb (ENSTNIG00000011170)	traf7 (ENSTNIG00000014016)	CASKIN1 (ENSTNIG00000014015)	prpsap2 (ENSTNIG00000014014)	PPP1R9B (ENSTNIG00000014013) #18	CA10 (ENSTNIG00000014012)	rpl23 (ENSTNIG00000014011)	ENSTNIG00000014010	smarce1 (ENSTNIG00000014009)	carm1 (ENSTNIG00000014008)	clpp (ENSTNIG00000014007)
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b
Ballan wrasse	MODERN SPECIES	632															PSMD11 (ENSLBEG00000019913)	DLX3 (ENSLBEG00000019886) #22	dlx4a (ENSLBEG00000019821)	nags (ENSLBEG00000019797)	ENSLBEG00000019780 #36	coa3b (ENSLBEG00000019757)
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000163460.a.a.b	ENSGT00940000156584.e.b #15	ENSGT00940000177241.e	ENSGT00940000174883	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000157593
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	26	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000163460.a.a.b	ENSGT00940000156584.e.b #15	ENSGT00940000174883	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000157593	ENSGT00940000168246
Large yellow croaker	MODERN SPECIES	483	aldh16a1 (ENSLCRG00005014294)	ENSLCRG00005014300 #25	ENSLCRG00005015490	ENSLCRG00005015492	eci1 (ENSLCRG00005015495)	dnase1 (ENSLCRG00005015503)	dnase1 (ENSLCRG00005015504)	nat15 (ENSLCRG00005015506)	carhsp1 (ENSLCRG00005015508)	dusp3b (ENSLCRG00005015510)	thraa (ENSLCRG00005015522)	nsfa (ENSLCRG00005015738)	cdk5r1a (ENSLCRG00005017151)	rpain (ENSLCRG00005017152)	PSMD11 (ENSLCRG00005017156)	DLX3 (ENSLCRG00005017174) #22	ENSLCRG00005017175	nags (ENSLCRG00005017176)	ENSLCRG00005017177	ENSLCRG00005017178 #36	coa3b (ENSLCRG00005017181)	col1a1a (ENSLCRG00005017192) #15	ENSLCRG00005019213	ENSLCRG00005019214	ENSLCRG00005019215	ENSLCRG00005019217	ENSLCRG00005019218	pex12 (ENSLCRG00005002581)	HDAC5 (ENSLCRG00005002606)	cyb561 (ENSLCRG00005002972)	TANC2 (ENSLCRG00005003021)
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010019937 #25	aldh16a1 (ENSSAUG00010019869)	fthl31 (ENSSAUG00010019861)	syt5a (ENSSAUG00010019859)	sTnT1 (ENSSAUG00010019858)	pih1d1 (ENSSAUG00010019855)	ENSSAUG00010018348	ENSSAUG00010018270	prl (ENSSAUG00010018269)	dusp3b (ENSSAUG00010018268)	thraa (ENSSAUG00010017310)	nsfa (ENSSAUG00010017283)	cdk5r1a (ENSSAUG00010017277)	rpain (ENSSAUG00010026054)	PSMD11 (ENSSAUG00010026051)	DLX3 (ENSSAUG00010026049) #22	ENSSAUG00010026048	nags (ENSSAUG00010026047)	ENSSAUG00010026046	ENSSAUG00010026045	coa3b (ENSSAUG00010026043)	col1a1a (ENSSAUG00010019190) #15	ENSSAUG00010018971	pex12 (ENSSAUG00010018968)	HDAC5 (ENSSAUG00010017838)	cyb561 (ENSSAUG00010017773)	TANC2 (ENSSAUG00010013053)	slc18a2 (ENSSAUG00010012977)	ENSSAUG00010012973	rbfox1 (ENSSAUG00010012921)	JUP (ENSSAUG00010010947)
Perciformes	ANCESTRAL SPECIES	1	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000157593	ENSGT00950000182995.e.a.b	ENSGT01030000234785
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.b.a.b	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00940000157593	ENSGT00950000182995.e.a.b	ENSGT00940000168246	ENSGT00940000160643.i
Channel bull blenny	MODERN SPECIES	22	ENSCGOG00000009150 #25	aldh16a1 (ENSCGOG00000010469)	fthl31 (ENSCGOG00000010489)	syt5a (ENSCGOG00000010695)	tnnt1 (ENSCGOG00000010716)	pih1d1 (ENSCGOG00000010772)	ENSCGOG00000010881	ENSCGOG00000015959	prl (ENSCGOG00000016226)	ENSCGOG00000016244	thraa (ENSCGOG00000016253)	nsfa (ENSCGOG00000016413)	cdk5r1a (ENSCGOG00000017738)	rpain (ENSCGOG00000017739)	PSMD11 (ENSCGOG00000017742)	DLX3 (ENSCGOG00000017774) #22	ENSCGOG00000017778	nags (ENSCGOG00000017779)	ENSCGOG00000017783	coa3b (ENSCGOG00000017788)	col1a1a (ENSCGOG00000017849) #15	ENSCGOG00000020028	pex12 (ENSCGOG00000020030)	HDAC5 (ENSCGOG00000020048)	cyb561 (ENSCGOG00000020481)	ENSCGOG00000020485	TANC2 (ENSCGOG00000020542)	SLC18A2 (ENSCGOG00000021297)	ENSCGOG00000021298	RARA (ENSCGOG00000021300)	ENSCGOG00000021307
Pike perch	MODERN SPECIES	91	ENSSLUG00000017171	prmt1 (ENSSLUG00000013226)	AP2A1 (ENSSLUG00000012995)	ENSSLUG00000012971	rras (ENSSLUG00000012961)	prrg2 (ENSSLUG00000012955)	PRR12 (ENSSLUG00000012950)	tspan4b (ENSSLUG00000012941)	ENSSLUG00000012937	nosip (ENSSLUG00000012932)	rcn3 (ENSSLUG00000012922)	mettl22 (ENSSLUG00000024740)	abat (ENSSLUG00000024683)	rpain (ENSSLUG00000024671)	PSMD11 (ENSSLUG00000024664)	DLX3 (ENSSLUG00000024647) #22	ENSSLUG00000024641	nags (ENSSLUG00000024637)	B4GALNT2 (ENSSLUG00000024632) #36	ENSSLUG00000024627 #36	coa3b (ENSSLUG00000024621)	col1a1a (ENSSLUG00000024030) #15	ENSSLUG00000023956	ENSSLUG00000023953	ENSSLUG00000023951	pex12 (ENSSLUG00000023949)	HDAC5 (ENSSLUG00000023934)	cyb561 (ENSSLUG00000023925)	TANC2 (ENSSLUG00000023586)	ENSSLUG00000022751	ENSSLUG00000022479
Cottioidei	ANCESTRAL SPECIES	1	ENSGT00390000005678	ENSGT00950000182846.b	ENSGT00390000008314	ENSGT00390000000022.a	ENSGT00940000158833.a.a #18	ENSGT00950000182803.A.a.a	ENSGT00940000158025.a.a.b.h	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT00390000012078.a.b	ENSGT00950000182916.a.b.a.a.a.b.a.b	ENSGT00390000013719	ENSGT00950000182917.a.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b	ENSGT01030000234785	ENSGT00940000168246
Lumpfish	MODERN SPECIES	23	eci1 (ENSCLMG00005017360)	dnase1 (ENSCLMG00005017359)	nat15 (ENSCLMG00005017358)	carhsp1 (ENSCLMG00005017357)	PPP1R9B (ENSCLMG00005017355) #18	prpsap2 (ENSCLMG00005016507)	ENSCLMG00005016504	traf7 (ENSCLMG00005013926)	gng13b (ENSCLMG00005013910)	rad23aa (ENSCLMG00005013909)	nfixb (ENSCLMG00005013907)	ENSCLMG00005013906	zgc:158403 (ENSCLMG00005013061)	rpain (ENSCLMG00005013053)	PSMD11 (ENSCLMG00005013049)	DLX3 (ENSCLMG00005013048) #22	ENSCLMG00005013047	nags (ENSCLMG00005013045)	ENSCLMG00005013041 #36	coa3b (ENSCLMG00005013039)	ENSCLMG00005013038	col1a1a (ENSCLMG00005011583) #15	ENSCLMG00005011571	pex12 (ENSCLMG00005011570)	HDAC5 (ENSCLMG00005006315)	cyb561 (ENSCLMG00005006257)	TANC2 (ENSCLMG00005006254)	ENSCLMG00005006252	SLC18A2 (ENSCLMG00005006241)	RARA (ENSCLMG00005006219)	ENSCLMG00005006217
Stickleback	MODERN SPECIES	10	ENSGACG00000004798	tspan4b (ENSGACG00000004802)	PRR12 (ENSGACG00000004828)	prrg2 (ENSGACG00000004841)	rras (ENSGACG00000004844)	ENSGACG00000004854	AP2A1 (ENSGACG00000004857)	prmt1 (ENSGACG00000004897)	trpm4a (ENSGACG00000004950)	hao1 (ENSGACG00000004960)	smg1 (ENSGACG00000004970)	GADD45GIP1 (ENSGACG00000005000)	zgc:158403 (ENSGACG00000005008)	rpain (ENSGACG00000005060)	PSMD11 (ENSGACG00000005084)	DLX3 (ENSGACG00000005117) #22	dlx4a (ENSGACG00000005120)	ENSGACG00000005125	nags (ENSGACG00000005126)	ENSGACG00000005130	ENSGACG00000005131 #36	ENSGACG00000005138	ENSGACG00000005139	col1a1a (ENSGACG00000005143) #15	ENSGACG00000005239	ENSGACG00000005245	pex12 (ENSGACG00000005249)	HDAC5 (ENSGACG00000005250)	cyb561 (ENSGACG00000005261)	ENSGACG00000005267	TANC2 (ENSGACG00000005270)
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT00390000006679.b #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b	ENSGT00950000183145.B.a.b.c
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT00390000006679.b.n #36	ENSGT00940000173491	ENSGT00940000177154	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b
Pomacentridae	ANCESTRAL SPECIES	63	ENSGT00390000018541	ENSGT01030000234606.a.b.i.a	ENSGT00940000155223.a.a	ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT01090000260162	ENSGT01100000263473.a.b.g.a.a.b.a.a.b	ENSGT00940000164286.j.b.a.a.a	ENSGT00940000177763	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i	ENSGT00940000168246	ENSGT01070000254843.a	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT00390000006679.b.m #36	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b
Pomacentridae_A	ANCESTRAL SPECIES	21	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT01030000234606.a.b.i.a	ENSGT00940000155223.a.a	ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT01090000260162	ENSGT01100000263473.a.b.g.a.a.b.a.a.b	ENSGT00940000164286.j.b.a.a.a	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i	ENSGT00940000168246	ENSGT01070000254843.a	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m #36	ENSGT00940000173491	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000165576.a.b	ENSGT00530000063301.a.a.c.b	ENSGT00390000006416	ENSGT00390000008812.b.b.b
Amphiprion	ANCESTRAL SPECIES	179			ENSGT01030000234606.a.b.i.a.k	ENSGT01030000234606.a.b.i.a.l	ENSGT00940000155223.a.a	ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT01090000260162	ENSGT01100000263473.a.b.g.a.a.b.a.a.b	ENSGT00940000164286.j.b.a.a.a	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i	ENSGT00940000168246	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000156584.e.b #15	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00940000159997
Orange clownfish	MODERN SPECIES	5	timm29 (ENSAPEG00000021078)	ENSAPEG00000021057	ENSAPEG00000021036	CA10 (ENSAPEG00000020965)	rpl23 (ENSAPEG00000020938)	ENSAPEG00000020933	smarce1 (ENSAPEG00000020901)	ENSAPEG00000020884	ENSAPEG00000020868	ENSAPEG00000020852	ENSAPEG00000020839	ENSAPEG00000020609	mpp2a (ENSAPEG00000020561)	pyya (ENSAPEG00000020549)	ENSAPEG00000020542	DLX3 (ENSAPEG00000020512) #22	dlx4a (ENSAPEG00000020469)	nags (ENSAPEG00000020385)	col1a1a (ENSAPEG00000020275) #15	ENSAPEG00000020252	pex12 (ENSAPEG00000020244)	HDAC5 (ENSAPEG00000020144)	cyb561 (ENSAPEG00000020038)	TANC2 (ENSAPEG00000019908)	ENSAPEG00000019752	RARA (ENSAPEG00000019710)	PSMD11 (ENSAPEG00000019666)	rpain (ENSAPEG00000019626)	CDK5R1 (ENSAPEG00000019609)	nsfa (ENSAPEG00000019522)	ENSAPEG00000019508
Clown anemonefish	MODERN SPECIES	2078																DLX3 (ENSAOCG00000015427) #22	ENSAOCG00000015488	nags (ENSAOCG00000015522)
Spiny chromis	MODERN SPECIES	534												col1a1a (ENSAPOG00000009538) #15	coa3b (ENSAPOG00000009561)	ENSAPOG00000009566 #36	ENSAPOG00000009581	DLX3 (ENSAPOG00000009603) #22	ENSAPOG00000009696	nags (ENSAPOG00000009708)	ENSAPOG00000009728	ENSAPOG00000009774	ENSAPOG00000009783	pyya (ENSAPOG00000009793)	mpp2a (ENSAPOG00000009858)	ENSAPOG00000009875	ENSAPOG00000009902
Bicolor damselfish	MODERN SPECIES	959		smarce1 (ENSSPAG00000017868)	ENSSPAG00000017856	ENSSPAG00000017844	ENSSPAG00000017831	ENSSPAG00000017823	ENSSPAG00000017819	ENSSPAG00000017808	ENSSPAG00000017801	ENSSPAG00000017794	ENSSPAG00000017776	mpp2a (ENSSPAG00000017742)	pyya (ENSSPAG00000017729)	ENSSPAG00000017724	ENSSPAG00000017705	DLX3 (ENSSPAG00000017687) #22	ENSSPAG00000017673	nags (ENSSPAG00000017633)	ENSSPAG00000017592	coa3b (ENSSPAG00000017575)
Cichlidae	ANCESTRAL SPECIES	19	ENSGT00950000182846.b	ENSGT00390000005678	ENSGT01100000263484.C.b.b	ENSGT00650000094974.a	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.o.a	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m #36	ENSGT00970000198135	ENSGT00940000156584.e.b #15	ENSGT00980000198722.b	ENSGT00940000166007.c.a.a.b	ENSGT00940000174883.h	ENSGT00940000177241	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.o.a.c.a	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A.s	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m.a #36	ENSGT00940000177154.d	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b	ENSGT00950000183145.B.a.b.c	ENSGT01030000234785.j.d	ENSGT00940000168246
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	38	ENSGT00950000182841.a.o.a.c.a	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A.s	ENSGT00950000182818.A.t	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m.a #36	ENSGT00390000006679.b.n.a.b #36	ENSGT00390000006679.b.n.b.a #36	ENSGT00940000173491	ENSGT00390000006679.b.n.a.a #36	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b	ENSGT00950000182995.e.a.b
Haplochromini	ANCESTRAL SPECIES	57	ENSGT00950000182841.a.o.a.c.a.a	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A.s	ENSGT00950000182818.A.t	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m.a #36	ENSGT00390000006679.b.n.a.b #36	ENSGT00390000006679.b.n.b.a #36	ENSGT00940000173491	ENSGT00940000177154.c	ENSGT00390000006679.b.n.a.a #36	ENSGT00940000156584.e.b #15	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209	ENSGT00940000160534	ENSGT00950000183197.a	ENSGT00940000156447.a.b
Burton s mouthbrooder	MODERN SPECIES	633					ENSHBUG00000009891	ENSHBUG00000009782	si:dkey-16p21.8 (ENSHBUG00000009726)	prl (ENSHBUG00000009708)	prl (ENSHBUG00000009682)	dusp3b (ENSHBUG00000009667)	thraa (ENSHBUG00000009639)	nsfa (ENSHBUG00000009607)	cdk5r1a (ENSHBUG00000009502)	rpain (ENSHBUG00000009479)	PSMD11 (ENSHBUG00000009457)	DLX3 (ENSHBUG00000009425) #22	dlx4a (ENSHBUG00000009402)
Haplochromini_A	ANCESTRAL SPECIES	43	ENSGT00950000182917.a.b.b	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A.s	ENSGT00950000182818.A.t	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m.a #36	ENSGT00940000179732	ENSGT00390000006679.b.n.b.a #36	ENSGT00940000173491	ENSGT00940000177154.c	ENSGT00390000006679.b.n.a.a #36	ENSGT00940000156584.e.b #15	ENSGT01060000249103	ENSGT00940000177241	ENSGT00940000174883.h	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a	ENSGT00390000016209
P. nyererei	MODERN SPECIES	589					ENSPNYG00000019485	ENSPNYG00000019432	si:dkey-16p21.8 (ENSPNYG00000019417)	prl (ENSPNYG00000019408)	prl (ENSPNYG00000019398)	dusp3b (ENSPNYG00000019374)	thraa (ENSPNYG00000019352)	nsfa (ENSPNYG00000019302)	cdk5r1a (ENSPNYG00000019291)	rpain (ENSPNYG00000019275)	PSMD11 (ENSPNYG00000019232)	DLX3 (ENSPNYG00000019215) #22	ENSPNYG00000019206	nags (ENSPNYG00000019192)
Haplochromini_B	ANCESTRAL SPECIES	31	ENSGT00950000182841.a.o.a.c.a.a.a.a	ENSGT01060000248575.D.c.b.b.a.l	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a.b	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A.s	ENSGT00950000182818.A.t	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00390000006679.b.m.a #36	ENSGT00390000006679.b.n.a.b #36	ENSGT00940000179732	ENSGT00390000006679.b.n.b.a #36	ENSGT00940000173491	ENSGT00940000177154.c	ENSGT00390000006679.b.n.a.a #36	ENSGT00940000156584.e.b #15	ENSGT01060000249103	ENSGT00940000177241	ENSGT00940000174883.h	ENSGT00940000164625.o.a	ENSGT00940000155311.A.a
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005022677	ENSMZEG00005022675	ENSMZEG00005022671	ENSMZEG00005022667	ENSMZEG00005018971	ENSMZEG00005018859	si:dkey-16p21.8 (ENSMZEG00005018855)	prl (ENSMZEG00005018848)	prl (ENSMZEG00005018843)	dusp3b (ENSMZEG00005018840)	thraa (ENSMZEG00005018835)	nsfa (ENSMZEG00005018814)	rpain (ENSMZEG00005018807)	PSMD11 (ENSMZEG00005018796)	cdk5r1a (ENSMZEG00005018790)	DLX3 (ENSMZEG00005018784) #22	ENSMZEG00005018781	nags (ENSMZEG00005018774)	ENSMZEG00005018769 #36	ENSMZEG00005018765	ENSMZEG00005018763 #36	ENSMZEG00005018760	ENSMZEG00005018746 #36	coa3b (ENSMZEG00005018739)	ENSMZEG00005018733 #36	ENSMZEG00005018731	col1a1a (ENSMZEG00005018722) #15	ENSMZEG00005018716	ENSMZEG00005018714	ENSMZEG00005018710	ENSMZEG00005018704
Eastern happy	MODERN SPECIES	16	ENSACLG00000008092	ENSACLG00000008067	ENSACLG00000007402	ENSACLG00000007398	ENSACLG00000007357	si:dkey-16p21.8 (ENSACLG00000007348)	prl (ENSACLG00000007341)	prl (ENSACLG00000007323)	ENSACLG00000007318	dusp3b (ENSACLG00000007299)	thraa (ENSACLG00000007247)	nsfa (ENSACLG00000007069)	cdk5r1a (ENSACLG00000007067)	rpain (ENSACLG00000007056)	PSMD11 (ENSACLG00000007023)	DLX3 (ENSACLG00000007018) #22	ENSACLG00000007015	nags (ENSACLG00000007000)	ENSACLG00000006986 #36	ENSACLG00000006981	ENSACLG00000006968	ENSACLG00000006958	ENSACLG00000006948 #36	ENSACLG00000006944	ENSACLG00000006873 #36	coa3b (ENSACLG00000006868)	ENSACLG00000006866	ENSACLG00000006468 #36	col1a1a (ENSACLG00000006444) #15	ENSACLG00000006438	ENSACLG00000006427
Lyretail cichlid	MODERN SPECIES	424	ENSNBRG00000012493	syt5a (ENSNBRG00000012503)	tnnt1 (ENSNBRG00000012511)	ENSNBRG00000012528	ENSNBRG00000012560	ENSNBRG00000012571	si:dkey-16p21.8 (ENSNBRG00000012621)	prl (ENSNBRG00000012633)	prl (ENSNBRG00000012705)	dusp3b (ENSNBRG00000013098)	thraa (ENSNBRG00000013365)	nsfa (ENSNBRG00000014850)	cdk5r1a (ENSNBRG00000015130)	rpain (ENSNBRG00000015144)	PSMD11 (ENSNBRG00000015159)	DLX3 (ENSNBRG00000015183) #22	ENSNBRG00000015209	nags (ENSNBRG00000015229)	ENSNBRG00000015267
Nile tilapia	MODERN SPECIES	16	ENSONIG00000039129	ENSONIG00000028131	ENSONIG00000030610	ENSONIG00000038602	ENSONIG00000006479	ENSONIG00000006476	prl (ENSONIG00000006467)	ENSONIG00000031940	DUSP3 (ENSONIG00000038734)	thraa (ENSONIG00000006456)	ENSONIG00000029578	nsfa (ENSONIG00000006446)	CDK5R1 (ENSONIG00000006445)	rpain (ENSONIG00000006442)	PSMD11 (ENSONIG00000006439)	DLX3 (ENSONIG00000041536) #22	ENSONIG00000006433	nags (ENSONIG00000006432)	ENSONIG00000040133	ENSONIG00000039339	ENSONIG00000035670	ENSONIG00000039706 #36	ENSONIG00000030637	ENSONIG00000032145	ENSONIG00000031163	ENSONIG00000006424 #36	ENSONIG00000006419 #36	ENSONIG00000006420 #36	coa3b (ENSONIG00000037228)	ENSONIG00000037286	ENSONIG00000038611
Midas cichlid	MODERN SPECIES	563	ENSACIG00000003306	ENSACIG00000003332	gjb9b (ENSACIG00000003352)	pef1 (ENSACIG00000003379)	smim12 (ENSACIG00000003391)	gja4 (ENSACIG00000003399)	dlgap3 (ENSACIG00000003520)	FUCA1 (ENSACIG00000003591)	ENSACIG00000003605	ENSACIG00000003610	zbtb8b (ENSACIG00000003626)	heyl (ENSACIG00000003688)	cdk5r1a (ENSACIG00000003725)	rpain (ENSACIG00000003733)	PSMD11 (ENSACIG00000003753)	DLX3 (ENSACIG00000003789) #22	ENSACIG00000003811	nags (ENSACIG00000003826)	ENSACIG00000003895	ENSACIG00000003909	ENSACIG00000003920 #36	ENSACIG00000003955 #36	ENSACIG00000003999
Atherinomorphae	ANCESTRAL SPECIES	25	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000163460.a.a.b	ENSGT00940000168246	ENSGT00940000160643.i	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00390000003628.a.b	ENSGT00940000166711	ENSGT00390000004690.a.a	ENSGT00940000155223.a.a	ENSGT01030000234606.a.b.i.a	ENSGT00390000018541	ENSGT00390000010157.b
Oryzias	ANCESTRAL SPECIES													ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000153578.B	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00390000003628.a.b	ENSGT00940000166711	ENSGT00510000048539	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00990000204611.c	ENSGT01030000234606.a.b.i.a	ENSGT00390000004690.a.a	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310
Oryzias_a	ANCESTRAL SPECIES	104												ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000153578.B	ENSGT00940000155348.B.c	ENSGT00940000163871.b	ENSGT00390000003628.a.b	ENSGT00940000166711	ENSGT00510000048539	ENSGT00390000010157.b	ENSGT00390000018541	ENSGT00990000204611.c	ENSGT01030000234606.a.b.i.a	ENSGT00390000004690.a.a	ENSGT00390000018717.b.a.a	ENSGT00940000154776	ENSGT00940000159138	ENSGT00940000158310
Japanese Medaka HdrR	MODERN SPECIES	22	aoc2 (ENSORLG00000017488)	actr10 (ENSORLG00000017497)	ENSORLG00000025261	ENSORLG00000023217	ENSORLG00000025514	ENSORLG00000029125	RRN3 (ENSORLG00000026398)	gspt1l (ENSORLG00000026597)	ENSORLG00000026353	pdxdc1 (ENSORLG00000018963)	NSF (ENSORLG00000018913)	ENSORLG00000023908	ENSORLG00000018877	ENSORLG00000025977	ENSORLG00000018831	ENSORLG00000022293 #22	nags (ENSORLG00000018756)	ENSORLG00000028318	ppl (ENSORLG00000018743)	mpp2a (ENSORLG00000018697)	ENSORLG00000018666	smarce1 (ENSORLG00000018629)	ENSORLG00000023639	ENSORLG00000023559	ENSORLG00000025492	mettl22 (ENSORLG00000025302)	yipf2 (ENSORLG00000019602)	timm29 (ENSORLG00000019592)	ENSORLG00000023365	ENSORLG00000026339	ENSORLG00000019141
Chinese medaka	MODERN SPECIES	2264																ENSOSIG00000012813 #22
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT00940000157744.c #25	ENSGT00940000161135	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000163460.a.a.b
Aplocheiloidei	ANCESTRAL SPECIES	272											ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b
Mangrove rivulus	MODERN SPECIES	249	ENSKMAG00000012959	ENSKMAG00000012989	si:dkey-16p21.8 (ENSKMAG00000013074)	prl (ENSKMAG00000013086)	ENSKMAG00000013145	ENSKMAG00000013158	dusp3b (ENSKMAG00000013170)	ENSKMAG00000013200	ENSKMAG00000013256	GAL3ST2 (ENSKMAG00000013266)	thraa (ENSKMAG00000013299)	nsfa (ENSKMAG00000013366)	cdk5r1a (ENSKMAG00000013498)	rpain (ENSKMAG00000013511)	PSMD11 (ENSKMAG00000013540)	DLX3 (ENSKMAG00000013672) #22	dlx4a (ENSKMAG00000013682)
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015002648	Nfu_g_1_019576 (ENSNFUG00015002624)	ENSNFUG00015002552 #25	ALDH16A1 (ENSNFUG00015002487)	FTL (ENSNFUG00015002448)	ENSNFUG00015002428	syt5a (ENSNFUG00015002424)	tnnt1 (ENSNFUG00015002416)	ENSNFUG00015002413	dusp3b (ENSNFUG00015002412)	thraa (ENSNFUG00015002280)	NSFA (ENSNFUG00015002129)	CDK5R1 (ENSNFUG00015002104)	RPAIN (ENSNFUG00015002100)	PSMD11 (ENSNFUG00015002058)	DLX3 (ENSNFUG00015002037) #22	ENSNFUG00015002031	ENSNFUG00015002027	ENG (ENSNFUG00015001805)	ENSNFUG00015001798	Nfu_g_1_019756 (ENSNFUG00015001794)	DDX39A (ENSNFUG00015001735)	ENSNFUG00015001721	TXN2 (ENSNFUG00015001719)	ENSNFUG00015001716	MYH9 (ENSNFUG00015001458)	slc25a38a (ENSNFUG00015001388)	RPSA (ENSNFUG00015001374)	UBN2 (ENSNFUG00015001361)	C3H19ORF43 (ENSNFUG00015001354)	hook2 (ENSNFUG00015000942)
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00940000161135	ENSGT00950000182841.a.o.a	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000163460.a.a.b.c.b
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00940000161135	ENSGT00950000182841.a.o.a	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000163460.a.a.b.c.b.b	ENSGT00940000163460.a.a.b.c.a	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b	ENSGT00940000156833.b
Poecilia	ANCESTRAL SPECIES	18	ENSGT00940000161135	ENSGT00950000182841.a.o.a	ENSGT00950000182841.a.p	ENSGT00940000166981	ENSGT00940000160609.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000163460.a.a.b.c.b.b	ENSGT00940000163460.a.a.b.c.a.b	ENSGT00940000163460.a.a.b.c.a.a	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a	ENSGT00940000155575.i.b
NAME_6	ANCESTRAL SPECIES	146								ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491	ENSGT00940000177154.e	ENSGT00940000163460.a.a.b.c.b.b	ENSGT00940000163460.a.a.b.c.a.b	ENSGT00940000163460.a.a.b.c.a.a	ENSGT00940000164817	ENSGT00940000153578.B	ENSGT00940000156435	ENSGT00390000007164	ENSGT00940000171636	ENSGT00390000017136	ENSGT00940000156505.t	ENSGT00940000157054.c.a
Sailfin molly	MODERN SPECIES	795												nsfa (ENSPLAG00000016623)	CDK5R1 (ENSPLAG00000016575)	rpain (ENSPLAG00000016565)	PSMD11 (ENSPLAG00000016554)	ENSPLAG00000016520 #22	ENSPLAG00000016466
Amazon molly	MODERN SPECIES	470						ENSPFOG00000013658	ENSPFOG00000013670	ENSPFOG00000013976	prl (ENSPFOG00000014103)	dusp3b (ENSPFOG00000014124)	thraa (ENSPFOG00000014136)	nsfa (ENSPFOG00000014187)	CDK5R1 (ENSPFOG00000014375)	rpain (ENSPFOG00000014385)	PSMD11 (ENSPFOG00000014420)	DLX3 (ENSPFOG00000014463) #22	ENSPFOG00000014479	nags (ENSPFOG00000014497)	ENSPFOG00000014546	ENSPFOG00000014563	ENSPFOG00000014565	ENSPFOG00000022331	ENSPFOG00000014593	ppl (ENSPFOG00000014679)	glyr1 (ENSPFOG00000014804)	COG1 (ENSPFOG00000014872)	rgs9a (ENSPFOG00000014989)	GNA13 (ENSPFOG00000015068)	SLC16A6 (ENSPFOG00000015089)	wipi1 (ENSPFOG00000015124)	ENSPFOG00000020932
Guppy	MODERN SPECIES	460	syt5a (ENSPREG00000012368)	tnnt1 (ENSPREG00000012247)	pih1d1 (ENSPREG00000012193)	ENSPREG00000012179	ENSPREG00000012140	ENSPREG00000012125	ENSPREG00000012086	si:dkey-16p21.8 (ENSPREG00000012071)	prl (ENSPREG00000012058)	dusp3b (ENSPREG00000012040)	thraa (ENSPREG00000011986)	nsfa (ENSPREG00000011863)	CDK5R1 (ENSPREG00000011818)	rpain (ENSPREG00000011787)	PSMD11 (ENSPREG00000011747)	ENSPREG00000011723 #22	ENSPREG00000011713	nags (ENSPREG00000011693)	coa3b (ENSPREG00000011679)	ENSPREG00000011672	ENSPREG00000011660	cbln10 (ENSPREG00000011645)	ENSPREG00000011637	ENSPREG00000011590	ppl (ENSPREG00000011553)	glyr1 (ENSPREG00000011531)	rogdi (ENSPREG00000011501)	ENSPREG00000011491	COG1 (ENSPREG00000011446)	rgs9a (ENSPREG00000011416)	gna13a (ENSPREG00000011390)
Platyfish	MODERN SPECIES	7	syt5a (ENSXMAG00000018006)	tnnt1 (ENSXMAG00000008583)	pih1d1 (ENSXMAG00000008571)	ENSXMAG00000010850	ENSXMAG00000010845	si:dkey-16p21.8 (ENSXMAG00000020973)	prl (ENSXMAG00000010841)	dusp3b (ENSXMAG00000028844)	thraa (ENSXMAG00000010829)	ENSXMAG00000028514	nsfa (ENSXMAG00000010812)	ENSXMAG00000025449	cdk5r1a (ENSXMAG00000010811)	rpain (ENSXMAG00000010808)	PSMD11 (ENSXMAG00000010693)	DLX3 (ENSXMAG00000010690) #22	ENSXMAG00000021845	nags (ENSXMAG00000013316)	coa3b (ENSXMAG00000025633)	ENSXMAG00000028747	ENSXMAG00000022744	ENSXMAG00000026028	ENSXMAG00000007211	ENSXMAG00000021747	ppl (ENSXMAG00000014943)	glyr1 (ENSXMAG00000015002)	rogdi (ENSXMAG00000007200)	ENSXMAG00000021006	COG1 (ENSXMAG00000007164)	rgs9a (ENSXMAG00000007142)	ENSXMAG00000029593
NAME_4	ANCESTRAL SPECIES	292								ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C	ENSGT00980000198607	ENSGT00950000182818.A	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00390000006416	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00390000005602	ENSGT00940000173491
Mummichog	MODERN SPECIES	344							ENSFHEG00000016263	ENSFHEG00000016320	si:dkey-16p21.8 (ENSFHEG00000016345)	prl (ENSFHEG00000016360)	thraa (ENSFHEG00000016382)	nsfa (ENSFHEG00000016431)	CDK5R1 (ENSFHEG00000016446)	rpain (ENSFHEG00000016471)	PSMD11 (ENSFHEG00000016537)	DLX3 (ENSFHEG00000016572) #22	ENSFHEG00000016599	nags (ENSFHEG00000016620)	coa3b (ENSFHEG00000016626)
Sheepshead minnow	MODERN SPECIES	1335															PSMD11 (ENSCVAG00000014788)	DLX3 (ENSCVAG00000014754) #22	ENSCVAG00000014721
Pinecone sodierfish	MODERN SPECIES	22	fthl31 (ENSMMDG00005009892)	syt5a (ENSMMDG00005009885)	tnnt1 (ENSMMDG00005009881)	pih1d1 (ENSMMDG00005009877)	ENSMMDG00005005749	ENSMMDG00005005640	ENSMMDG00005005633	prl (ENSMMDG00005005630)	ENSMMDG00005005628	DUSP3 (ENSMMDG00005005625)	THRA (ENSMMDG00005004347)	nsfa (ENSMMDG00005003684)	cdk5r1a (ENSMMDG00005003592)	rpain (ENSMMDG00005003583)	PSMD11 (ENSMMDG00005003557)	DLX3 (ENSMMDG00005003519) #22	ENSMMDG00005003513	carhsp1 (ENSMMDG00005003511)	nat15 (ENSMMDG00005003510)	ENSMMDG00005003508	ENSMMDG00005003202	eci1 (ENSMMDG00005003170)	dnase1 (ENSMMDG00005003124)	ENSMMDG00005003111	arhgdig (ENSMMDG00005003106)	ENSMMDG00005003103	clcn7 (ENSMMDG00005002459)	ENSMMDG00005002427	SLC2A6 (ENSMMDG00005002413)	si:ch211-157c3.4 (ENSMMDG00005002409)	USP7 (ENSMMDG00005000860)
Cod	MODERN SPECIES	11	ENSGMOG00000012683	ENSGMOG00000027372	ENSGMOG00000033190	ENSGMOG00000016730	ENSGMOG00000016739	ENSGMOG00000008386	ENSGMOG00000022294	ENSGMOG00000008388	ENSGMOG00000024456	ENSGMOG00000016982	ENSGMOG00000002108	ENSGMOG00000019217	ENSGMOG00000027036	ENSGMOG00000018536	ENSGMOG00000018547	ENSGMOG00000018564 #22	ENSGMOG00000033856	ENSGMOG00000029804	ENSGMOG00000026796	ENSGMOG00000007172	ENSGMOG00000003498	ENSGMOG00000036840	ENSGMOG00000009721	ENSGMOG00000009678	ENSGMOG00000009709	ENSGMOG00000010953	ENSGMOG00000030390	ENSGMOG00000035364	ENSGMOG00000029591	ENSGMOG00000024986	ENSGMOG00000032571
Protacanthopterygii	ANCESTRAL SPECIES	54	ENSGT00940000164903.a.e	ENSGT00940000167839	ENSGT00940000165368	ENSGT00940000167630	ENSGT00940000166481	ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000164511.C	ENSGT00950000182818.A	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b	ENSGT00530000064085.d	ENSGT00390000008812.b.b.b	ENSGT00530000063301.a.a.c.b	ENSGT00940000158951.f #22	ENSGT00940000165079.b	ENSGT00940000159275.b	ENSGT00940000154664.h.j
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	767									ENSGT00940000164511.C.k.b.b	ENSGT00950000182818.A.o	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b.b	ENSGT00530000064085.d.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00940000158951.f.c #22	ENSGT00940000165079.b.b	ENSGT00940000163377.a.b.b.a.b
Salmoninae_a	ANCESTRAL SPECIES	120						ENSGT00950000182841.a.m.b	ENSGT00940000166981.e.a	ENSGT00940000160609.f.e	ENSGT00940000164511.C.k.b.b	ENSGT00950000182818.A.o.a	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b.b	ENSGT00530000064085.d.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00940000158951.f.c #22	ENSGT00940000165079.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000159252.b.b.b	ENSGT00940000160492.f	ENSGT00950000183143.c.b.m	ENSGT00390000002810.l	ENSGT00550000074873.ob.a.a.b.b	ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.b.a	ENSGT00940000153496.a.a.r.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a
Salmo	ANCESTRAL SPECIES	64							ENSGT00940000166981.e.a	ENSGT00940000160609.f.e	ENSGT00940000164511.C.k.b.b	ENSGT00950000182818.A.o.a	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b.b	ENSGT00530000064085.d.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00940000158951.f.c #22	ENSGT00940000165079.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000159252.b.b.b	ENSGT00940000160492.f	ENSGT00950000183143.c.b.m	ENSGT00390000002810.l	ENSGT00550000074873.ob.a.a.b.b	ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f
River trout	MODERN SPECIES	33	ENSSTUG00000023560	dnaja1 (ENSSTUG00000023788)	ENSSTUG00000023848	ENSSTUG00000023852	ENSSTUG00000023865	syt5a (ENSSTUG00000023918)	tnnt1 (ENSSTUG00000023957)	ENSSTUG00000024016	ENSSTUG00000024119	prl (ENSSTUG00000025286)	dusp3b (ENSSTUG00000025300)	THRA (ENSSTUG00000025312)	nsfa (ENSSTUG00000025460)	cdk5r1a (ENSSTUG00000027621)	PSMD11 (ENSSTUG00000027628)	DLX3 (ENSSTUG00000027720) #22	dlx4a (ENSSTUG00000027729)	ENSSTUG00000027742	ENSSTUG00000027796	ENSSTUG00000027813	SEZ6L2 (ENSSTUG00000027824)	kctd13 (ENSSTUG00000027924)	xpo6 (ENSSTUG00000027955)	ENSSTUG00000029153	ATP6V0C (ENSSTUG00000029160)	spsb3a (ENSSTUG00000029182)	mapk8ip3 (ENSSTUG00000029202)	jpt2 (ENSSTUG00000029523)	CRAMP1 (ENSSTUG00000029545)	tmem11 (ENSSTUG00000029578)	ENSSTUG00000029582
Atlantic salmon	MODERN SPECIES	15					ENSSSAG00000031377	ENSSSAG00000015328	ENSSSAG00000065652	ENSSSAG00000034084	ENSSSAG00000031162	ENSSSAG00000088009	ENSSSAG00000057762	ENSSSAG00000102800	ENSSSAG00000041588	ENSSSAG00000083996	ENSSSAG00000120584	ENSSSAG00000082098 #22	HEBP2 (ENSSSAG00000045682)	ENSSSAG00000045730	ENSSSAG00000045889	ENSSSAG00000052647	ENSSSAG00000102969	ENSSSAG00000106267	ENSSSAG00000095306	ENSSSAG00000114586	mapk8ip3 (ENSSSAG00000053437)	jpt2 (ENSSSAG00000095240)	ENSSSAG00000061415	tmem11 (ENSSSAG00000000270)	ENSSSAG00000105245	ENSSSAG00000095953	ENSSSAG00000097370
Oncorhynchus	ANCESTRAL SPECIES							ENSGT00950000182841.a.m.b	ENSGT00940000166981.e.a	ENSGT00940000164511.C.k.b.b	ENSGT00950000182818.A.o.a	ENSGT00950000182818.A.o.b	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b.b	ENSGT00530000064085.d.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00940000158951.f.c #22	ENSGT00940000165079.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000160492.f	ENSGT00550000074873.ob.a.a.b.b	ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.b.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT00940000158837.g.b.b	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b
Oncorhynchus_a	ANCESTRAL SPECIES							ENSGT00950000182841.a.m.b	ENSGT00940000166981.e.a	ENSGT00940000160609.f.e	ENSGT00940000164511.C.k.b.b	ENSGT00950000182818.A.o.a	ENSGT00940000162682.B.b	ENSGT00940000157917.a.a.b.b	ENSGT00530000064085.d.b	ENSGT00390000008812.b.b.b.b	ENSGT00530000063301.a.a.c.b.a.b	ENSGT00940000158951.f.c #22	ENSGT00940000165079.b.b	ENSGT00940000163377.a.b.b.a.b	ENSGT00940000160492.f	ENSGT00550000074873.ob.a.a.b.b	ENSGT01030000234629.E.a.b.c	ENSGT00940000153496.a.a.r.b.a	ENSGT00390000007652.c	ENSGT00390000003337.f.b	ENSGT00390000006617.f	ENSGT00940000158837.g.b.b	ENSGT01030000234586.A.a.a.b.h	ENSGT00940000180096.a	ENSGT00940000154700.f	ENSGT00950000182838.A.a.a.k.b	ENSGT00940000167194.b
Coho salmon	MODERN SPECIES	1	ENSOKIG00005034731	ENSOKIG00005034693	STXBP2 (ENSOKIG00005034430)	ENSOKIG00005034389	XAB2 (ENSOKIG00005033079)	ENSOKIG00005032994	ENSOKIG00005032824	ENSOKIG00005032481	ENSOKIG00005032442	ENSOKIG00005032418	dusp3b (ENSOKIG00005032411)	THRA (ENSOKIG00005032167)	NSF (ENSOKIG00005030932)	CDK5R1 (ENSOKIG00005030823)	PSMD11 (ENSOKIG00005030783)	DLX3 (ENSOKIG00005030773) #22	ENSOKIG00005030742	ENSOKIG00005030686	SEZ6L2 (ENSOKIG00005030576)	SPSB3 (ENSOKIG00005030546)	mapk8ip3 (ENSOKIG00005029868)	ENSOKIG00005029815	jpt2 (ENSOKIG00005029781)	CRAMP1 (ENSOKIG00005029739)	tmem11 (ENSOKIG00005029724)	ENSOKIG00005029359	ENSOKIG00005029333	ENSOKIG00005029316	prmt1 (ENSOKIG00005026770)	AP2A1 (ENSOKIG00005026192)	ENSOKIG00005026159
Chinook salmon	MODERN SPECIES		sprn (ENSOTSG00005010756)	ENSOTSG00005010755	ENSOTSG00005010754	SRF (ENSOTSG00005010753)	ENSOTSG00005010751	ENSOTSG00005010749	syt5a (ENSOTSG00005010748)	tnnt1 (ENSOTSG00005010747)	ENSOTSG00005010733	prl2 (ENSOTSG00005010731)	dusp3b (ENSOTSG00005010730)	THRA (ENSOTSG00005009816)	nsfa (ENSOTSG00005009601)	cdk5r1a (ENSOTSG00005009599)	PSMD11 (ENSOTSG00005009598)	DLX3 (ENSOTSG00005009596) #22	dlx4a (ENSOTSG00005009595)	ENSOTSG00005009594	SEZ6L2 (ENSOTSG00005009418)	ATP6V0C (ENSOTSG00005009413)	spsb3a (ENSOTSG00005009412)	mapk8ip3 (ENSOTSG00005009375)	CRAMP1 (ENSOTSG00005009373)	tmem11 (ENSOTSG00005009371)	ENSOTSG00005009357	ENSOTSG00005009356	ENSOTSG00005009346	prmt1 (ENSOTSG00005008317)	AP2A1 (ENSOTSG00005007807)	ENSOTSG00005007801	rras (ENSOTSG00005007799)
Rainbow trout	MODERN SPECIES	22				ENSOMYG00000021406	ENSOMYG00000046940	ENSOMYG00000071216	ENSOMYG00000046921	ENSOMYG00000046919	ENSOMYG00000053599	ENSOMYG00000046850	ENSOMYG00000046756	ENSOMYG00000063379	ENSOMYG00000053810	ENSOMYG00000051375	ENSOMYG00000046708	ENSOMYG00000046701 #22	ENSOMYG00000046697	ENSOMYG00000046695	ENSOMYG00000046626	ENSOMYG00000046565	ENSOMYG00000046560	ENSOMYG00000057237	mapk8ip3 (ENSOMYG00000046505)	jpt2 (ENSOMYG00000046462)	ENSOMYG00000046444	tmem11 (ENSOMYG00000046436)	ENSOMYG00000046434	ENSOMYG00000046426	ENSOMYG00000074210	ENSOMYG00000071171	ENSOMYG00000046415
Huchen	MODERN SPECIES	747													nsfa (ENSHHUG00000029008)	cdk5r1a (ENSHHUG00000030043)	PSMD11 (ENSHHUG00000030057)	DLX3 (ENSHHUG00000030155) #22	dlx4a (ENSHHUG00000030161)	ENSHHUG00000030163	CAMSAP3 (ENSHHUG00000030210)	xab2 (ENSHHUG00000030223)	stxbp2 (ENSHHUG00000000034)	brd4 (ENSHHUG00000000493)	LPAR2 (ENSHHUG00000000521)	pbx4 (ENSHHUG00000000554)	ENSHHUG00000000558
Salmoninae	ANCESTRAL SPECIES	25	ENSGT00950000182841.a.n.b	ENSGT00940000166981.e	ENSGT00940000160609.f.e	ENSGT00950000182841.a.n.a.b	ENSGT00940000166981.f	ENSGT00940000160609.f.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.k.b.a	ENSGT00950000182818.A.p	ENSGT00990000212733	ENSGT00940000157917.a.a.b.a	ENSGT00530000064085.d.a	ENSGT00390000008812.b.b.b.a	ENSGT00530000063301.a.a.c.b.a.a	ENSGT00940000158951.f.d #22	ENSGT00940000165079.b.a	ENSGT00940000163377.a.b.b.a.a.a	ENSGT00940000163377.a.b.b.a.a.b	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b.a.a.h	ENSGT00950000182975.a.b.b	ENSGT00950000182975.a.b.a.b.e	ENSGT00980000198723	ENSGT00550000075140.e	ENSGT00940000154308.A.a.b.a.b.a.b.a	ENSGT00940000160045.w	ENSGT00390000016884	ENSGT00940000162790.a.u.b.a	ENSGT00940000156233.yb	ENSGT01050000244941.B.c.b.b
Salmoninae_a	ANCESTRAL SPECIES	60	ENSGT00940000161135	ENSGT00950000182841.a.n.b.a.b	ENSGT00940000166981.e.b	ENSGT00950000182841.a.n.b.a.a	ENSGT00940000166981.f	ENSGT00940000160609.f.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.k.b.a	ENSGT00950000182818.A.p	ENSGT00990000212733	ENSGT00940000157917.a.a.b.a	ENSGT00530000064085.d.a	ENSGT00390000008812.b.b.b.a	ENSGT00530000063301.a.a.c.b.a.a	ENSGT00940000158951.f.d #22	ENSGT00940000165079.b.a	ENSGT00940000163377.a.b.b.a.a.a	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b.a.a.h	ENSGT00950000182975.a.b.b	ENSGT00950000182975.a.b.a.b.e	ENSGT00980000198723	ENSGT00550000075140.e	ENSGT00940000154308.A.a.b.a.b.a.b.a	ENSGT01000000220576	ENSGT00940000160045.w	ENSGT00390000016884	ENSGT00940000162790.a.u.b.a	ENSGT00940000156233.yb	ENSGT01050000244941.B.c.b.b
Oncorhynchus	ANCESTRAL SPECIES	33	ENSGT00940000166981.f	ENSGT00950000182841.a.n.b.a.a	ENSGT00950000182841.a.n.b.a.b.f	ENSGT00940000166981.e.b	ENSGT00940000160609.f.e	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.l	ENSGT00940000164511.C.k.b.a	ENSGT00950000182818.A.p	ENSGT00990000212733	ENSGT00940000157917.a.a.b.a	ENSGT00530000064085.d.a	ENSGT00390000008812.b.b.b.a	ENSGT00530000063301.a.a.c.b.a.a	ENSGT00940000158951.f.d #22	ENSGT00940000165079.b.a	ENSGT00940000163377.a.b.b.a.a.a	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b.a.a.h	ENSGT00550000075140.e	ENSGT00940000154308.A.a.b.a.b.a.b.a	ENSGT01000000220576	ENSGT00940000160045.w	ENSGT00390000016884	ENSGT00940000162790.a.u.b.a	ENSGT00940000156233.yb	ENSGT01050000244941.B.c.b.b	ENSGT00940000165175.b.c	ENSGT00390000011347.f	ENSGT00550000075064.g
Oncorhynchus_a	ANCESTRAL SPECIES	49	ENSGT00950000182841.a.n.b.a.b.f	ENSGT00940000166981.e.b	ENSGT00940000161135	ENSGT00950000182841.a.n.b.a.a	ENSGT00940000166981.f	ENSGT00940000160609.f.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.l	ENSGT00950000182818.A.p	ENSGT00990000212733	ENSGT00940000157917.a.a.b.a	ENSGT00530000064085.d.a	ENSGT00390000008812.b.b.b.a	ENSGT00530000063301.a.a.c.b.a.a	ENSGT00940000158951.f.d #22	ENSGT00940000165079.b.a	ENSGT00940000163377.a.b.b.a.a.a	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b.a.a.h	ENSGT00550000075140.e	ENSGT00940000154308.A.a.b.a.b.a.b.a	ENSGT01000000220576	ENSGT00940000160045.w	ENSGT00390000016884	ENSGT00940000162790.a.u.b.a	ENSGT00940000156233.yb	ENSGT01050000244941.B.c.b.b	ENSGT00940000165175.b.c	ENSGT00390000011347.f	ENSGT00550000075064.g
Chinook salmon	MODERN SPECIES	33	ENSOTSG00005032786	ENSOTSG00005032787	ENSOTSG00005032788	ENSOTSG00005032816	syt5a (ENSOTSG00005032817)	tnnt1 (ENSOTSG00005032818)	pih1d1 (ENSOTSG00005032825)	ENSOTSG00005032848	ENSOTSG00005033495	prl (ENSOTSG00005033496)	ENSOTSG00005033497	THRA (ENSOTSG00005033500)	nsfa (ENSOTSG00005034995)	cdk5r1a (ENSOTSG00005042060)	PSMD11 (ENSOTSG00005042061)	DLX3 (ENSOTSG00005042072) #22	dlx4a (ENSOTSG00005042074)	ENSOTSG00005042078	nr5a5 (ENSOTSG00005042079)	ENSOTSG00005042080	ENSOTSG00005042081	xab2 (ENSOTSG00005042085)	ENSOTSG00005042877	ENSOTSG00005042878	ENSOTSG00005042880	ENSOTSG00005042881	stxbp2 (ENSOTSG00005042891)	pet100 (ENSOTSG00005043451)	brd4 (ENSOTSG00005043452)	ENSOTSG00005043453	lpar2a (ENSOTSG00005043457)
Coho salmon	MODERN SPECIES	26	ENSOKIG00005036066	syt5a (ENSOKIG00005036166)	tnnt1 (ENSOKIG00005036186)	pih1d1 (ENSOKIG00005036210)	ENSOKIG00005036256	ENSOKIG00005036283	ENSOKIG00005036532	ENSOKIG00005001704	ENSOKIG00005001733	prl (ENSOKIG00005001744)	ENSOKIG00005001753	THRA (ENSOKIG00005001841)	nsfa (ENSOKIG00005002310)	CDK5R1 (ENSOKIG00005002417)	PSMD11 (ENSOKIG00005002435)	DLX3 (ENSOKIG00005002490) #22	dlx4a (ENSOKIG00005002496)	ENSOKIG00005002529	nr5a5 (ENSOKIG00005002608)	CAMSAP3 (ENSOKIG00005002620)	xab2 (ENSOKIG00005002776)	ENSOKIG00005003600	ENSOKIG00005003603	stxbp2 (ENSOKIG00005003822)	pet100 (ENSOKIG00005008401)	brd4 (ENSOKIG00005008414)	ENSOKIG00005008451	lpar2a (ENSOKIG00005008465)	pbx4 (ENSOKIG00005008487)	ENSOKIG00005008539	atp13a1 (ENSOKIG00005008605)
Rainbow trout	MODERN SPECIES	3	syt5a (ENSOMYG00000060679)	tnnt1 (ENSOMYG00000021446)	ENSOMYG00000051568	pih1d1 (ENSOMYG00000021516)	ENSOMYG00000021870	ENSOMYG00000071965	ENSOMYG00000074647	prl (ENSOMYG00000024343)	ENSOMYG00000024354	ENSOMYG00000024631	ENSOMYG00000055042	ENSOMYG00000025536	ENSOMYG00000025792	ENSOMYG00000025835	ENSOMYG00000075080	ENSOMYG00000025935 #22	ENSOMYG00000025942	ENSOMYG00000026050	nr5a5 (ENSOMYG00000026132)	ENSOMYG00000026157	xab2 (ENSOMYG00000030311)	ENSOMYG00000032223	ENSOMYG00000032228	stxbp2 (ENSOMYG00000033039)	pet100 (ENSOMYG00000038679)	ENSOMYG00000038780	ENSOMYG00000055948	ENSOMYG00000038877	lpar2a (ENSOMYG00000038892)	pbx4 (ENSOMYG00000038928)	ENSOMYG00000038957
Salmo	ANCESTRAL SPECIES	28	ENSGT01100000263614.g	ENSGT00940000161135	ENSGT00950000182841.a.n.b.a.b	ENSGT00940000166981.e.b	ENSGT00940000160609.f.f	ENSGT00510000048192	ENSGT01060000248595.b.a.b.b.a.a	ENSGT00940000164511.C.k.b.a	ENSGT00950000182818.A.p	ENSGT00950000182818.A.o.b	ENSGT00990000212733	ENSGT00940000157917.a.a.b.a	ENSGT00530000064085.d.a	ENSGT00390000008812.b.b.b.a	ENSGT00530000063301.a.a.c.b.a.a	ENSGT00940000158951.f.d #22	ENSGT00940000165079.b.a	ENSGT00940000163377.a.b.b.a.a.b	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b.a.a.h	ENSGT00950000182975.a.b.b	ENSGT00980000198723	ENSGT00550000075140.e	ENSGT00940000154308.A.a.b.a.b.a.b.a	ENSGT01000000220576	ENSGT00940000160045.w	ENSGT00390000016884	ENSGT00940000162790.a.u.b.a	ENSGT00940000156233.yb	ENSGT01050000244941.B.c.b.b	ENSGT00940000165175.b.c
River trout	MODERN SPECIES	25	ENSSTUG00000005608	aldh16a1 (ENSSTUG00000005636)	ENSSTUG00000005804	ENSSTUG00000005875	ENSSTUG00000005938	syt5a (ENSSTUG00000005998)	tnnt1 (ENSSTUG00000006007)	pih1d1 (ENSSTUG00000006019)	ENSSTUG00000006113	ENSSTUG00000007993	THRA (ENSSTUG00000008217)	prl (ENSSTUG00000008325)	nsfa (ENSSTUG00000008361)	cdk5r1a (ENSSTUG00000009230)	PSMD11 (ENSSTUG00000009233)	DLX3 (ENSSTUG00000009275) #22	dlx4a (ENSSTUG00000009283)	ENSSTUG00000009294	ENSSTUG00000009433	ENSSTUG00000010551	ENSSTUG00000010740	ENSSTUG00000010924	nr5a5 (ENSSTUG00000011016)	ENSSTUG00000011020	ENSSTUG00000011027	xab2 (ENSSTUG00000011057)	ENSSTUG00000012319	ENSSTUG00000012399	ENSSTUG00000012408	stxbp2 (ENSSTUG00000012445)	pet100 (ENSSTUG00000013446)
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000090829	ENSSSAG00000008351	ENSSSAG00000004738	ENSSSAG00000008219	syt5a (ENSSSAG00000008464)	tnnt1 (ENSSSAG00000008475)	pih1d1 (ENSSSAG00000008498)	ENSSSAG00000009307	ENSSSAG00000057340	prl (ENSSSAG00000057719)	ENSSSAG00000057732	tr-alpha (ENSSSAG00000102595)	nsf (ENSSSAG00000058975)	ENSSSAG00000121832	ENSSSAG00000084100	ENSSSAG00000062915 #22	ENSSSAG00000107946	ENSSSAG00000113207	ENSSSAG00000062926	nr5a5 (ENSSSAG00000062963)	ENSSSAG00000037099	xab2 (ENSSSAG00000038320)	ENSSSAG00000106818	ENSSSAG00000113439	stxbp2 (ENSSSAG00000042439)	ENSSSAG00000117411	ENSSSAG00000118646	ENSSSAG00000043262	lpar2a (ENSSSAG00000109865)	ENSSSAG00000087257	pbx4 (ENSSSAG00000043285)
Huchen	MODERN SPECIES	470									ENSHHUG00000048744	prl (ENSHHUG00000048750)	ENSHHUG00000048801	THRA (ENSHHUG00000048806)	nsfa (ENSHHUG00000049779)	cdk5r1a (ENSHHUG00000049855)	PSMD11 (ENSHHUG00000049866)	ENSHHUG00000049931 #22	dlx4a (ENSHHUG00000049934)	ENSHHUG00000049939	ENSHHUG00000049953	nr5a5 (ENSHHUG00000049995)	CAMSAP3 (ENSHHUG00000050001)	xab2 (ENSHHUG00000050042)	ENSHHUG00000050120	stxbp2 (ENSHHUG00000050124)	pet100 (ENSHHUG00000050171)	brd4 (ENSHHUG00000050176)	ENSHHUG00000050190	lpar2a (ENSHHUG00000050208)	pbx4 (ENSHHUG00000050215)	ENSHHUG00000050248	atp13a1 (ENSHHUG00000050285)
Northern pike	MODERN SPECIES	10	tnnt1 (ENSELUG00000008433)	pih1d1 (ENSELUG00000000327)	ENSELUG00000028506	ENSELUG00000033764	ENSELUG00000026431	ENSELUG00000029483	ENSELUG00000022166	ENSELUG00000031307	ENSELUG00000001624	prl (ENSELUG00000022249)	DUSP3 (ENSELUG00000022276)	THRA (ENSELUG00000022367)	nsfa (ENSELUG00000022546)	ENSELUG00000021322	PSMD11 (ENSELUG00000022637)	DLX3 (ENSELUG00000001505) #22	dlx4a (ENSELUG00000022662)	ENSELUG00000028527	ENSELUG00000026605	PPP4C (ENSELUG00000022771)	cln3 (ENSELUG00000022817)	ENSELUG00000022824	ENSELUG00000022853	ENSELUG00000026558	ENSELUG00000000981	ALDOA (ENSELUG00000022947)	ENSELUG00000031100	ENSELUG00000008834	ENSELUG00000023127	ENSELUG00000022983	ENSELUG00000031790
Spotted gar	MODERN SPECIES	653	hoxb3a (ENSLOCG00000013436)	HOXB1 (ENSLOCG00000013432)	skap1 (ENSLOCG00000013427)	snx11 (ENSLOCG00000013423)	cbx1b (ENSLOCG00000013417)	NFE2L1 (ENSLOCG00000013411)	copz2 (ENSLOCG00000013403)	cdk5rap3 (ENSLOCG00000013394)	pnpo (ENSLOCG00000013387)	mrpl10 (ENSLOCG00000013385)	osbpl7 (ENSLOCG00000013354)	pdk2b (ENSLOCG00000013349) #20	TBKBP1 (ENSLOCG00000013343)	tbx21 (ENSLOCG00000013335)	itga3b (ENSLOCG00000013315) #21	dlx3b (ENSLOCG00000013312) #22	dlx4b (ENSLOCG00000013307)	ENSLOCG00000013301	kat7b (ENSLOCG00000013296) #25	ENSLOCG00000013294	slc25a39 (ENSLOCG00000013283)	FAM171A2 (ENSLOCG00000013275)	itga2b (ENSLOCG00000013257)	CRHR1 (ENSLOCG00000013245)	cdc27 (ENSLOCG00000013232)	KANSL1 (ENSLOCG00000013228)	ENSLOCG00000013222	zgc:163073 (ENSLOCG00000013218)	ghrhr2 (ENSLOCG00000013211)	SCN4A (ENSLOCG00000013195)	ENSLOCG00000013192
Reedfish	MODERN SPECIES	425																dlx3b (ENSECRG00000016032) #22
Elephant shark	MODERN SPECIES	1573											PPP1R9B (ENSCMIG00000009956) #18	ENSCMIG00000009950 #19	pdk2b (ENSCMIG00000009838) #20	ENSCMIG00000009792	ENSCMIG00000009788 #21	dlx3b (ENSCMIG00000009785) #22	ENSCMIG00000009783	ENSCMIG00000009781	kat7b (ENSCMIG00000009719) #25	ENSCMIG00000009705 #26	psmc5 (ENSCMIG00000009696)	SMARCD2 (ENSCMIG00000009468)	ASIC2 (ENSCMIG00000009373)	ENSCMIG00000009364	ENSCMIG00000009363	asb16 (ENSCMIG00000009358)	tmub2 (ENSCMIG00000009353)	atxn7l3a (ENSCMIG00000009345)	ENSCMIG00000009188	slc4a1a (ENSCMIG00000009100)	slc35b1 (ENSCMIG00000009087) #27