Murinae	ANCESTRAL SPECIES	31	ENSGT00390000010557	ENSGT00940000161049 #7	ENSGT00940000159301 #8	ENSGT00940000159945 #9	ENSGT00950000183019.f.a #10	ENSGT00940000162156 #11	ENSGT00940000158227 #12	ENSGT00940000155281 #14	ENSGT00940000163221 #15	ENSGT00390000020445	ENSGT00940000158304 #17	ENSGT00940000156280 #18	ENSGT00940000155757 #19	ENSGT01010000222287.B.a.b.a #20	ENSGT00580000081600.c.a #21	ENSGT00940000159935 #22	ENSGT00940000161119 #23	ENSGT00530000063891 #24	ENSGT00940000159119.b #25	ENSGT00390000003759 #26	ENSGT00390000007809.b #27	ENSGT00940000153458.A ##28	ENSGT00940000160059.a.a #29	ENSGT00940000156321 #30	ENSGT00940000154205.h #32	ENSGT00390000000878 #33
Mus	ANCESTRAL SPECIES	24	ENSGT00940000161049 #7	ENSGT00940000159301 #8	ENSGT00940000159945 #9	ENSGT00950000183019.f.a #10	ENSGT00940000162156 #11	ENSGT00800000125329 #13	ENSGT00940000158227 #12	ENSGT00940000155281 #14	ENSGT00940000163221 #15	ENSGT00390000020445	ENSGT00940000158304 #17	ENSGT00940000156280 #18	ENSGT00940000155757 #19	ENSGT01010000222287.B.a.b.a #20	ENSGT00580000081600.c.a #21	ENSGT00940000159935 #22	ENSGT00940000161119 #23	ENSGT00530000063891 #24	ENSGT00940000159119.b #25	ENSGT00390000003759 #26	ENSGT00390000007809.b #27	ENSGT00940000153458.A ##28	ENSGT00940000160059.a.a #29	ENSGT00940000156321 #30	ENSGT00860000136054 #31	ENSGT00940000154205.h #32	ENSGT00390000000878 #33	ENSGT00390000014786 #34
Shrew mouse	MODERN SPECIES	11	Wdr86 (MGP_PahariEiJ_G0021795) #7	Crygn (MGP_PahariEiJ_G0021796) #8	Rheb (MGP_PahariEiJ_G0021797) #9	Prkag2 (MGP_PahariEiJ_G0021798) #10	Galntl5 (MGP_PahariEiJ_G0021799) #11	Galnt11 (MGP_PahariEiJ_G0021800) #12	MGP_PahariEiJ_G0021801 #13	Kmt2c (MGP_PahariEiJ_G0021802) #14	Cct8l1 (MGP_PahariEiJ_G0021803) #15	MGP_PahariEiJ_G0021804 #16	MGP_PahariEiJ_G0021805 #17	Dpp6 (MGP_PahariEiJ_G0021806) #18	Paxip1 (MGP_PahariEiJ_G0021807) #19	Htr5a (MGP_PahariEiJ_G0021808) #20	Insig1 (MGP_PahariEiJ_G0021809) #21	En2 (MGP_PahariEiJ_G0021810) #22	MGP_PahariEiJ_G0021811 #23	Rbm33 (MGP_PahariEiJ_G0021812) #24	Shh (MGP_PahariEiJ_G0021813) #25	Rnf32 (MGP_PahariEiJ_G0021814) #26	Lmbr1 (MGP_PahariEiJ_G0021815) #27	MGP_PahariEiJ_G0021816 #28	Mnx1 (MGP_PahariEiJ_G0021817) #29	Ube3c (MGP_PahariEiJ_G0021818) #30	MGP_PahariEiJ_G0021819 #31	MGP_PahariEiJ_G0021820 #32	Il6 (MGP_PahariEiJ_G0021821) #33	MGP_PahariEiJ_G0021822 #34	Samd9l (MGP_PahariEiJ_G0021823) #35	Hepacam2 (MGP_PahariEiJ_G0021824) #36	Vps50 (MGP_PahariEiJ_G0021825) #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000161049 #7	ENSGT00940000159301 #8	ENSGT00940000159945 #9	ENSGT00950000183019.f.a #10	ENSGT00940000162156 #11	ENSGT00800000125329 #13	ENSGT00940000158227 #12	ENSGT00940000155281 #14	ENSGT00940000163221 #15	ENSGT00390000020445	ENSGT00940000158304 #17	ENSGT00940000156280 #18	ENSGT00940000155757 #19	ENSGT01010000222287.B.a.b.a #20	ENSGT00580000081600.c.a #21	ENSGT00940000159935 #22	ENSGT00940000161119 #23	ENSGT00530000063891 #24	ENSGT00940000159119.b #25	ENSGT00390000003759 #26	ENSGT00390000007809.b #27	ENSGT00940000153458.A ##28	ENSGT00940000160059.a.a #29	ENSGT00940000156321 #30	ENSGT00860000136054 #31	ENSGT00940000154205.h #32	ENSGT00390000000878 #33	ENSGT00390000014786 #34	ENSGT00700000106164	ENSGT00530000063834.e.b	ENSGT00940000154677
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000161049 #7	ENSGT00940000159301 #8	ENSGT00940000159945 #9	ENSGT00950000183019.f.a #10	ENSGT00940000162156 #11	ENSGT00800000125329 #13	ENSGT00940000158227 #12	ENSGT00940000155281 #14	ENSGT00940000163221 #15	ENSGT00390000020445	ENSGT00940000158304 #17	ENSGT00940000156280 #18	ENSGT00940000155757 #19	ENSGT01010000222287.B.a.b.a #20	ENSGT00580000081600.c.a #21	ENSGT00940000159935 #22	ENSGT00940000161119 #23	ENSGT00530000063891 #24	ENSGT00940000159119.b #25	ENSGT00390000003759 #26	ENSGT00390000007809.b #27	ENSGT00940000153458.A ##28	ENSGT00940000160059.a.a #29	ENSGT00940000156321 #30	ENSGT00860000136054 #31	ENSGT00940000154205.h #32	ENSGT00390000000878 #33	ENSGT00390000014786 #34	ENSGT00700000106164	ENSGT00530000063834.e.b	ENSGT00940000154677
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000161049 #7	ENSGT00940000159301 #8	ENSGT00940000159945 #9	ENSGT00950000183019.f.a #10	ENSGT00940000162156 #11	ENSGT00800000125329 #13	ENSGT00940000158227 #12	ENSGT00940000155281 #14	ENSGT00940000163221 #15	ENSGT00390000020445	ENSGT00940000158304 #17	ENSGT00940000156280 #18	ENSGT00940000155757 #19	ENSGT01010000222287.B.a.b.a #20	ENSGT00580000081600.c.a #21	ENSGT00940000159935 #22	ENSGT00940000161119 #23	ENSGT00530000063891 #24	ENSGT00940000159119.b #25	ENSGT00390000003759 #26	ENSGT00390000007809.b #27	ENSGT00940000153458.A ##28	ENSGT00940000160059.a.a #29	ENSGT00940000156321 #30	ENSGT00860000136054 #31	ENSGT00940000154205.h #32	ENSGT00390000000878 #33	ENSGT00390000014786 #34	ENSGT00700000106164	ENSGT00530000063834.e.b	ENSGT00940000154677
spretus	MODERN SPECIES	14	Wdr86 (MGP_SPRETEiJ_G0028018) #7	Crygn (MGP_SPRETEiJ_G0028019) #8	Rheb (MGP_SPRETEiJ_G0028020) #9	Prkag2 (MGP_SPRETEiJ_G0028021) #10	Galntl5 (MGP_SPRETEiJ_G0028022) #11	Galnt11 (MGP_SPRETEiJ_G0028023) #12	E130116L18Rik (MGP_SPRETEiJ_G0028024) #13	Kmt2c (MGP_SPRETEiJ_G0028025) #14	Cct8l1 (MGP_SPRETEiJ_G0028026) #15	Xrcc2 (MGP_SPRETEiJ_G0028027)	Actr3b (MGP_SPRETEiJ_G0028028) #17	Dpp6 (MGP_SPRETEiJ_G0028029) #18	Paxip1 (MGP_SPRETEiJ_G0028030) #19	Htr5a (MGP_SPRETEiJ_G0028031) #20	Insig1 (MGP_SPRETEiJ_G0028032) #21	En2 (MGP_SPRETEiJ_G0028033) #22	MGP_SPRETEiJ_G0028034 #23	Rbm33 (MGP_SPRETEiJ_G0028035) #24	Shh (MGP_SPRETEiJ_G0028036) #25	MGP_SPRETEiJ_G0028037 #26	Lmbr1 (MGP_SPRETEiJ_G0028038) #27	MGP_SPRETEiJ_G0028039 ##28	Mnx1 (MGP_SPRETEiJ_G0028040) #29	MGP_SPRETEiJ_G0028041 #30	MGP_SPRETEiJ_G0028042 #31	MGP_SPRETEiJ_G0028043 #32	Il6 (MGP_SPRETEiJ_G0028044) #33	MGP_SPRETEiJ_G0028045 #34	MGP_SPRETEiJ_G0028046	Garem2 (MGP_SPRETEiJ_G0028047)	Hadha (MGP_SPRETEiJ_G0028048)
Mouse	MODERN SPECIES	14	Gm21680 (ENSMUSG00000106627)	Gm21698 (ENSMUSG00000096045)	Gm1979 (ENSMUSG00000091049)	Gm5862 (ENSMUSG00000067700)	Speer4a (ENSMUSG00000073119)	Gm7347 (ENSMUSG00000073117)	Gm10471 (ENSMUSG00000073116)	5031410I06Rik (ENSMUSG00000051940)	Gm10220 (ENSMUSG00000067698)	Gm7361 (ENSMUSG00000059645)	Dpp6 (ENSMUSG00000061576) #18	Speer4b (ENSMUSG00000048703)	Paxip1 (ENSMUSG00000002221) #19	Htr5a (ENSMUSG00000039106) #20	Insig1 (ENSMUSG00000045294) #21	En2 (ENSMUSG00000039095) #22	Cnpy1 (ENSMUSG00000044681) #23	Rbm33 (ENSMUSG00000048271) #24	Shh (ENSMUSG00000002633) #25	Rnf32 (ENSMUSG00000029130) #26	Lmbr1 (ENSMUSG00000010721) #27	Nom1 (ENSMUSG00000001569) ##28	Mnx1 (ENSMUSG00000001566) #29	Ube3c (ENSMUSG00000039000) #30	Dnajb6 (ENSMUSG00000029131) #32	Il6 (ENSMUSG00000025746) #33	Tyms (ENSMUSG00000025747) #34	Garem2 (ENSMUSG00000044576)	Hadha (ENSMUSG00000025745)	Hadhb (ENSMUSG00000059447)	Adgrf3 (ENSMUSG00000067642)
Ryukyu mouse	MODERN SPECIES	14	Nub1 (MGP_CAROLIEiJ_G0027021)	MGP_CAROLIEiJ_G0027022 #7	Crygn (MGP_CAROLIEiJ_G0027023) #8	Rheb (MGP_CAROLIEiJ_G0027024) #9	Prkag2 (MGP_CAROLIEiJ_G0027025) #10	Galntl5 (MGP_CAROLIEiJ_G0027026) #11	Galnt11 (MGP_CAROLIEiJ_G0027027) #12	E130116L18Rik (MGP_CAROLIEiJ_G0027028) #13	Kmt2c (MGP_CAROLIEiJ_G0027029) #14	Cct8l1 (MGP_CAROLIEiJ_G0027030) #15	Xrcc2 (MGP_CAROLIEiJ_G0027031)	Dpp6 (MGP_CAROLIEiJ_G0027033) #18	Paxip1 (MGP_CAROLIEiJ_G0027034) #19	Htr5a (MGP_CAROLIEiJ_G0027035) #20	Insig1 (MGP_CAROLIEiJ_G0027036) #21	En2 (MGP_CAROLIEiJ_G0027037) #22	Cnpy1 (MGP_CAROLIEiJ_G0027038) #23	Rbm33 (MGP_CAROLIEiJ_G0027039) #24	Shh (MGP_CAROLIEiJ_G0027040) #25	Rnf32 (MGP_CAROLIEiJ_G0027041) #26	Lmbr1 (MGP_CAROLIEiJ_G0027042) #27	MGP_CAROLIEiJ_G0027043 ##28	Mnx1 (MGP_CAROLIEiJ_G0027044) #29	Ube3c (MGP_CAROLIEiJ_G0027045) #30	MGP_CAROLIEiJ_G0027046 #31	MGP_CAROLIEiJ_G0027047 #32	Il6 (MGP_CAROLIEiJ_G0027048) #33	MGP_CAROLIEiJ_G0027049 #34	MGP_CAROLIEiJ_G0027050	Garem2 (MGP_CAROLIEiJ_G0027051)	Hadha (MGP_CAROLIEiJ_G0027052)
Rat	MODERN SPECIES	14	Rheb (ENSRNOG00000050578) #9	Prkag2 (ENSRNOG00000009085) #10	LOC120102456 (ENSRNOG00000062492)	Galntl5 (ENSRNOG00000040301) #11	Galnt11 (ENSRNOG00000008117) #12	Kmt2c (ENSRNOG00000061080) #14	Cct8l2 (ENSRNOG00000047114) #15	Rpl10a-ps9 (ENSRNOG00000047067)	AABR07059161.1 (ENSRNOG00000051942)	Xrcc2 (ENSRNOG00000007493)	Actr3b (ENSRNOG00000031855) #17	Dpp6 (ENSRNOG00000030547) #18	Paxip1 (ENSRNOG00000007131) #19	Htr5a (ENSRNOG00000007066) #20	Insig1 (ENSRNOG00000006859) #21	En2 (ENSRNOG00000006846) #22	Cnpy1 (ENSRNOG00000028311) #23	Rbm33 (ENSRNOG00000006718) #24	Shh (ENSRNOG00000006120) #25	Rnf32 (ENSRNOG00000005691) #26	Lmbr1 (ENSRNOG00000059589) #27	Nom1 (ENSRNOG00000048969) ##28	Mnx1 (ENSRNOG00000046959) #29	LOC681193 (ENSRNOG00000042507)	Ube3c (ENSRNOG00000010702) #30	Dnajb6 (ENSRNOG00000010353) #32	Il6 (ENSRNOG00000010278) #33	ENSRNOG00000067309