Euteleostomi	ANCESTRAL SPECIES	30	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00980000201244	ENSGT00950000183003.a.b	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Sarcopterygii	ANCESTRAL SPECIES	38	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Tetrapoda	ANCESTRAL SPECIES	16	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Amniota	ANCESTRAL SPECIES	25	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Mammalia	ANCESTRAL SPECIES	62			ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Theria	ANCESTRAL SPECIES	17	ENSGT00940000155883.a.a	ENSGT00940000154623 #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Eutheria	ANCESTRAL SPECIES	19	ENSGT00940000154623 #7	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00390000008759	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00390000008759	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Primates	ANCESTRAL SPECIES	21	ENSGT00940000154623 #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Haplorrhini	ANCESTRAL SPECIES	21	ENSGT00940000154623 #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Simiiformes	ANCESTRAL SPECIES	21	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Catarrhini	ANCESTRAL SPECIES	11	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Hominoidea	ANCESTRAL SPECIES	9	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00390000016567.f #36	ENSGT00940000154837.f #37
Gibbon	MODERN SPECIES	11	ENSNLEG00000001480 #7	SLC6A2 (ENSNLEG00000001314) #8	LPCAT2 (ENSNLEG00000001258) #9	MMP2 (ENSNLEG00000001210) #10	IRX6 (ENSNLEG00000001193) #11	IRX5 (ENSNLEG00000001190) #12	ENSNLEG00000035629 #13	IRX3 (ENSNLEG00000032462) #14	FTO (ENSNLEG00000033330) #15	RPGRIP1L (ENSNLEG00000001149) #16	AKTIP (ENSNLEG00000031116) #17	RBL2 (ENSNLEG00000001036) #18	CHD9 (ENSNLEG00000001026) #19	ENSNLEG00000013975 #20	ENSNLEG00000034210 #21	SALL1 (ENSNLEG00000001008) #22	CYLD (ENSNLEG00000000923) #23	NOD2 (ENSNLEG00000000910) #24	SNX20 (ENSNLEG00000033286) #25	NKD1 (ENSNLEG00000029864) #26	BRD7 (ENSNLEG00000000834) #27	ADCY7 (ENSNLEG00000000816) #28	TENT4B (ENSNLEG00000000797) #29	HEATR3 (ENSNLEG00000000745) #30	CNEP1R1 (ENSNLEG00000034194) #31	ZNF423 (ENSNLEG00000000697) #32	C16orf78 (ENSNLEG00000027879) #33	CBLN1 (ENSNLEG00000000675) #34	N4BP1 (ENSNLEG00000000653) #35	ENSNLEG00000033251 #36	SIAH1 (ENSNLEG00000035150) #37
Hominidae	ANCESTRAL SPECIES	9	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00390000016567.f #36	ENSGT00940000154837.f #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	19	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125.k #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00390000016567.f #36	ENSGT00940000154837.f #37
Gorilla	MODERN SPECIES	7	SLC6A2 (ENSGGOG00000005154) #8	LPCAT2 (ENSGGOG00000005144) #9	MMP2 (ENSGGOG00000021966) #10	IRX6 (ENSGGOG00000004496) #11	IRX5 (ENSGGOG00000027776) #12	ENSGGOG00000036175 #13	IRX3 (ENSGGOG00000014067) #14	FTO (ENSGGOG00000011151) #15	RPGRIP1L (ENSGGOG00000011141) #16	AKTIP (ENSGGOG00000014821) #17	RBL2 (ENSGGOG00000025953) #18	CHD9 (ENSGGOG00000014816) #19	CHD9NB (ENSGGOG00000037829)	ENSGGOG00000036262	TOX3 (ENSGGOG00000009117) #21	SALL1 (ENSGGOG00000000663) #22	CYLD (ENSGGOG00000008448) #23	NOD2 (ENSGGOG00000010795) #24	SNX20 (ENSGGOG00000042612) #25	NKD1 (ENSGGOG00000008141) #26	ENSGGOG00000014824 #27	ADCY7 (ENSGGOG00000014807) #28	TENT4B (ENSGGOG00000006316) #29	HEATR3 (ENSGGOG00000000878) #30	CNEP1R1 (ENSGGOG00000025211) #31	ZNF423 (ENSGGOG00000016641) #32	C16orf78 (ENSGGOG00000008081) #33	CBLN1 (ENSGGOG00000015205) #34	N4BP1 (ENSGGOG00000015565) #35	ENSGGOG00000026977 #36	SIAH1 (ENSGGOG00000000938) #37
Homo/Pan group	ANCESTRAL SPECIES	19	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125.k #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00390000016567.f #36	ENSGT00940000154837.f #37
Human	MODERN SPECIES	7	SLC6A2 (ENSG00000103546) #8	CAPNS2 (ENSG00000256812)	LPCAT2 (ENSG00000087253) #9	MMP2 (ENSG00000087245) #10	IRX6 (ENSG00000159387) #11	IRX5 (ENSG00000176842) #12	IRX3 (ENSG00000177508) #14	FTO (ENSG00000140718) #15	RPGRIP1L (ENSG00000103494) #16	AKTIP (ENSG00000166971) #17	RBL2 (ENSG00000103479) #18	CHD9 (ENSG00000177200) #19	CHD9NB (ENSG00000277639)	TOX3 (ENSG00000103460) #21	HNRNPA1L3 (ENSG00000224578)	SALL1 (ENSG00000103449) #22	CYLD (ENSG00000083799) #23	NOD2 (ENSG00000167207) #24	SNX20 (ENSG00000167208) #25	NKD1 (ENSG00000140807) #26	BRD7 (ENSG00000166164) #27	ADCY7 (ENSG00000121281) #28	TENT4B (ENSG00000121274) #29	HEATR3 (ENSG00000155393) #30	CNEP1R1 (ENSG00000205423) #31	ZNF423 (ENSG00000102935) #32	C16orf78 (ENSG00000166152) #33	CBLN1 (ENSG00000102924) #34	N4BP1 (ENSG00000102921) #35	SIAH1 (ENSG00000196470) #37	LONP2 (ENSG00000102910)
Pan	ANCESTRAL SPECIES	19	ENSGT00940000154623.d #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125.k #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT01030000234542.b.a.a.a.b.b	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00390000016567.f #36	ENSGT00940000154837.f #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	7	CES1 (ENSPTRG00000022723) ##7	SLC6A2 (ENSPTRG00000008126) #8	LPCAT2 (ENSPTRG00000008124) #9	MMP2 (ENSPTRG00000008123) #10	IRX6 (ENSPTRG00000008122) #11	IRX5 (ENSPTRG00000044627) #12	ENSPTRG00000043727 #13	IRX3 (ENSPTRG00000008120) #14	FTO (ENSPTRG00000008118) #15	RPGRIP1L (ENSPTRG00000008117) #16	AKTIP (ENSPTRG00000008116) #17	RBL2 (ENSPTRG00000008115) #18	CHD9 (ENSPTRG00000008113) #19	ENSPTRG00000045090	TOX3 (ENSPTRG00000008110) #21	SALL1 (ENSPTRG00000008108) #22	CYLD (ENSPTRG00000008107) #23	NOD2 (ENSPTRG00000008106) #24	SNX20 (ENSPTRG00000008105) #25	NKD1 (ENSPTRG00000008104) #26	BRD7 (ENSPTRG00000008103) #27	ADCY7 (ENSPTRG00000008102) #28	TENT4B (ENSPTRG00000008101) #29	HEATR3 (ENSPTRG00000008100) #30	CNEP1R1 (ENSPTRG00000041682) #31	ZNF423 (ENSPTRG00000008099) #32	C16H16orf78 (ENSPTRG00000008098) #33	CBLN1 (ENSPTRG00000008097) #34	N4BP1 (ENSPTRG00000008096) #35	ENSPTRG00000051824 #36	SIAH1 (ENSPTRG00000008094) #37
Chimpanzee	MODERN SPECIES	972	MAGED1 (ENSPTRG00000021914)	ENSPTRG00000046536	ENSPTRG00000047771	CENPVL3 (ENSPTRG00000051936)	ENSPTRG00000046232	ENSPTRG00000050633	ENSPTRG00000044134	BMP15 (ENSPTRG00000021908)	SHROOM4 (ENSPTRG00000021905)	DGKK (ENSPTRG00000048026)	CCNB3 (ENSPTRG00000048758)	AKAP4 (ENSPTRG00000049957)	CLCN5 (ENSPTRG00000021899)	PAGE4 (ENSPTRG00000021896)	ENSPTRG00000021894	ENSPTRG00000045256 #22	ENSPTRG00000048439	GAGE10 (ENSPTRG00000021892)	PPP1R3F (ENSPTRG00000046513)	FOXP3 (ENSPTRG00000021890)	CCDC22 (ENSPTRG00000021889)	ENSPTRG00000049813	CACNA1F (ENSPTRG00000021888)	SYP (ENSPTRG00000021887)	PRICKLE3 (ENSPTRG00000045748)	PLP2 (ENSPTRG00000021885)	MAGIX (ENSPTRG00000047576)	GPKOW (ENSPTRG00000047603)	WDR45 (ENSPTRG00000021882)	CCDC120 (ENSPTRG00000021880)	TFE3 (ENSPTRG00000021879)
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	7	SLC6A2 (ENSPPAG00000030886) #8	LPCAT2 (ENSPPAG00000031029) #9	MMP2 (ENSPPAG00000040209) #10	IRX6 (ENSPPAG00000016478) #11	IRX5 (ENSPPAG00000033596) #12	ENSPPAG00000041131 #13	IRX3 (ENSPPAG00000004040) #14	FTO (ENSPPAG00000028022) #15	RPGRIP1L (ENSPPAG00000039576) #16	AKTIP (ENSPPAG00000031822) #17	RBL2 (ENSPPAG00000037125) #18	ENSPPAG00000039388 #19	ENSPPAG00000028107 #19	ENSPPAG00000030984	TOX3 (ENSPPAG00000042135) #21	SALL1 (ENSPPAG00000035657) #22	CYLD (ENSPPAG00000027949) #23	NOD2 (ENSPPAG00000042973) #24	SNX20 (ENSPPAG00000031596) #25	ENSPPAG00000017627 #26	BRD7 (ENSPPAG00000038742) #27	ADCY7 (ENSPPAG00000026254) #28	TENT4B (ENSPPAG00000033650) #29	HEATR3 (ENSPPAG00000040469) #30	CNEP1R1 (ENSPPAG00000028006) #31	ZNF423 (ENSPPAG00000038999) #32	C16orf78 (ENSPPAG00000030795) #33	CBLN1 (ENSPPAG00000037058) #34	N4BP1 (ENSPPAG00000034858) #35	ENSPPAG00000030753 #36	SIAH1 (ENSPPAG00000031633) #37
Bonobo	MODERN SPECIES	369	ENSPPAG00000041779	ENSPPAG00000027565	MAGED1 (ENSPPAG00000037605)	CENPVL3 (ENSPPAG00000005217)	EZHIP (ENSPPAG00000005586)	ENSPPAG00000022094	BMP15 (ENSPPAG00000005038)	SHROOM4 (ENSPPAG00000039023)	DGKK (ENSPPAG00000034077)	CCNB3 (ENSPPAG00000027314)	AKAP4 (ENSPPAG00000034394)	CLCN5 (ENSPPAG00000029912)	USP27X (ENSPPAG00000012284)	PAGE4 (ENSPPAG00000037679)	PAGE1 (ENSPPAG00000030309)	ENSPPAG00000035136 #22	ENSPPAG00000043153	ENSPPAG00000027179	ENSPPAG00000027948	FOXP3 (ENSPPAG00000028117)	CCDC22 (ENSPPAG00000039638)	CACNA1F (ENSPPAG00000027619)	SYP (ENSPPAG00000033248)	PRICKLE3 (ENSPPAG00000040750)	PLP2 (ENSPPAG00000040820)	MAGIX (ENSPPAG00000037324)	GPKOW (ENSPPAG00000040116)	WDR45 (ENSPPAG00000042027)	CCDC120 (ENSPPAG00000026576)	TFE3 (ENSPPAG00000028832)	GRIPAP1 (ENSPPAG00000040230)
Cercopithecidae	ANCESTRAL SPECIES	8	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT01020000230346.C.c.a.b.a	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Cercopithecinae	ANCESTRAL SPECIES	10	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT01020000230346.C.c.a.b.a	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Vervet Monkey	MODERN SPECIES	24	LPCAT2 (ENSCSAG00000005278) #9	MMP2 (ENSCSAG00000005282) #10	IRX6 (ENSCSAG00000005285) #11	IRX5 (ENSCSAG00000005287) #12	ENSCSAG00000005289 #13	IRX3 (ENSCSAG00000005290) #14	ENSCSAG00000005293	FTO (ENSCSAG00000005296) #15	RPGRIP1L (ENSCSAG00000005297) #16	AKTIP (ENSCSAG00000005299) #17	RBL2 (ENSCSAG00000005301) #18	ENSCSAG00000018863	ENSCSAG00000005305	CHD9 (ENSCSAG00000005311) #19	TOX3 (ENSCSAG00000005317) #21	SALL1 (ENSCSAG00000005319) #22	CYLD (ENSCSAG00000005324) #23	NOD2 (ENSCSAG00000005331) #24	SNX20 (ENSCSAG00000005339) #25	NKD1 (ENSCSAG00000005349) #26	BRD7 (ENSCSAG00000005361) #27	ADCY7 (ENSCSAG00000005371) #28	TENT4B (ENSCSAG00000005390) #29	HEATR3 (ENSCSAG00000005398) #30	CNEP1R1 (ENSCSAG00000005400) #31	ZNF423 (ENSCSAG00000005405) #32	C16orf78 (ENSCSAG00000005410) #33	CBLN1 (ENSCSAG00000005415) #34	N4BP1 (ENSCSAG00000005417) #35	SIAH1 (ENSCSAG00000005422) #37	ENSCSAG00000018862
Cercopithecinae_a	ANCESTRAL SPECIES	10	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT01020000230346.C.c.a.b.a	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Macaca	ANCESTRAL SPECIES	8	ENSGT00940000154623.d #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT01020000230346.C.c.a.b.a	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Macaca_a	ANCESTRAL SPECIES	14	ENSGT00940000154623.c ##7	ENSGT00940000154623.d #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000166898.a.a.b.b.a.a.a.b.b.a.a.b.b.a.a.b.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000167556.b.b.a.b.a.a.a.b.b.b.b.b.a.a.a.a.b.a.a.a.a.b.b	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.b.b.a.b.b	ENSGT00940000159811 #34
Rhesus	MODERN SPECIES	12	SLC6A2 (ENSMMUG00000020238) #8	LPCAT2 (ENSMMUG00000004478) #9	MMP2 (ENSMMUG00000004475) #10	IRX6 (ENSMMUG00000011658) #11	IRX5 (ENSMMUG00000017440) #12	IRX3 (ENSMMUG00000001389) #14	FTO (ENSMMUG00000020583) #15	RPGRIP1L (ENSMMUG00000020580) #16	AKTIP (ENSMMUG00000008657) #17	RBL2 (ENSMMUG00000043440) #18	ENSMMUG00000051469	CHD9 (ENSMMUG00000016310) #19	ENSMMUG00000061289	ENSMMUG00000049893	TOX3 (ENSMMUG00000013967) #21	SALL1 (ENSMMUG00000017200) #22	ENSMMUG00000055889	CYLD (ENSMMUG00000012209) #23	NOD2 (ENSMMUG00000012207) #24	SNX20 (ENSMMUG00000019869) #25	NKD1 (ENSMMUG00000019868) #26	BRD7 (ENSMMUG00000003119) #27	ADCY7 (ENSMMUG00000003118) #28	TENT4B (ENSMMUG00000003116) #29	HEATR3 (ENSMMUG00000020065) #30	ENSMMUG00000051827	CNEP1R1 (ENSMMUG00000008365) #31	ENSMMUG00000065197	ZNF423 (ENSMMUG00000021261) #32	C20H16orf78 (ENSMMUG00000019881) #33	ENSMMUG00000057032
Crab-eating macaque	MODERN SPECIES	12	LPCAT2 (ENSMFAG00000032289) #9	MMP2 (ENSMFAG00000037156) #10	IRX6 (ENSMFAG00000046096) #11	IRX5 (ENSMFAG00000002928) #12	IRX3 (ENSMFAG00000032048) #14	ENSMFAG00000065181	FTO (ENSMFAG00000033026) #15	RPGRIP1L (ENSMFAG00000043106) #16	AKTIP (ENSMFAG00000044514) #17	ENSMFAG00000059726	RBL2 (ENSMFAG00000039132) #18	CHD9 (ENSMFAG00000041354) #19	ENSMFAG00000060755	ENSMFAG00000056521	TOX3 (ENSMFAG00000032933) #21	SALL1 (ENSMFAG00000003298) #22	CYLD (ENSMFAG00000043501) #23	NOD2 (ENSMFAG00000037753) #24	ENSMFAG00000033996 #25	NKD1 (ENSMFAG00000044696) #26	BRD7 (ENSMFAG00000035566) #27	ADCY7 (ENSMFAG00000037814) #28	ENSMFAG00000002315 #29	HEATR3 (ENSMFAG00000002184) #30	CNEP1R1 (ENSMFAG00000001901) #31	ENSMFAG00000054799	ZNF423 (ENSMFAG00000045032) #32	C16orf78 (ENSMFAG00000001439) #33	ENSMFAG00000053236	ENSMFAG00000056302	ENSMFAG00000059766
Pig-tailed macaque	MODERN SPECIES	188														TOX3 (ENSMNEG00000031324) #21	ENSMNEG00000030103	SALL1 (ENSMNEG00000034770) #22	CYLD (ENSMNEG00000030288) #23	NOD2 (ENSMNEG00000032525) #24	SNX20 (ENSMNEG00000000544) #25	NKD1 (ENSMNEG00000029629) #26	BRD7 (ENSMNEG00000041585) #27	ADCY7 (ENSMNEG00000028598) #28	TENT4B (ENSMNEG00000036382) #29	HEATR3 (ENSMNEG00000044688) #30	CNEP1R1 (ENSMNEG00000040247) #31	ZNF423 (ENSMNEG00000007103) #32	C16orf78 (ENSMNEG00000044619) #33	CBLN1 (ENSMNEG00000039224) #34	N4BP1 (ENSMNEG00000035504) #35	SIAH1 (ENSMNEG00000032985) #37	LONP2 (ENSMNEG00000033321)
Cercopithecinae_b	ANCESTRAL SPECIES	5	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b.b	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Cercopithecinae_d	ANCESTRAL SPECIES	4	ENSGT00940000154623.d #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000163338.b.b.b	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000006350.m.a.c.a.lb.b	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Sooty mangabey	MODERN SPECIES	96	SLC6A2 (ENSCATG00000031249) #8	LPCAT2 (ENSCATG00000044509) #9	MMP2 (ENSCATG00000014549) #10	IRX6 (ENSCATG00000035256) #11	IRX5 (ENSCATG00000044712) #12	ENSCATG00000021759 #13	IRX3 (ENSCATG00000035868) #14	FTO (ENSCATG00000030692) #15	RPGRIP1L (ENSCATG00000037264) #16	AKTIP (ENSCATG00000033583) #17	RBL2 (ENSCATG00000009941) #18	ENSCATG00000009432	CHD9 (ENSCATG00000036753) #19	ENSCATG00000030774 ##20	TOX3 (ENSCATG00000008040) #21	SALL1 (ENSCATG00000004982) #22	CYLD (ENSCATG00000025694) #23	NOD2 (ENSCATG00000032818) #24	SNX20 (ENSCATG00000031155) #25	NKD1 (ENSCATG00000033443) #26	BRD7 (ENSCATG00000027818) #27	ENSCATG00000003671	ADCY7 (ENSCATG00000022081) #28	TENT4B (ENSCATG00000031641) #29	HEATR3 (ENSCATG00000021656) #30	CNEP1R1 (ENSCATG00000015240) #31	ZNF423 (ENSCATG00000034661) #32	C16orf78 (ENSCATG00000021615) #33	CBLN1 (ENSCATG00000042192) #34	ENSCATG00000028377	N4BP1 (ENSCATG00000036429) #35
Drill	MODERN SPECIES	984										AKTIP (ENSMLEG00000035100) #17	RBL2 (ENSMLEG00000038469) #18	ENSMLEG00000036960	CHD9 (ENSMLEG00000043219) #19	ENSMLEG00000039258 ##20	TOX3 (ENSMLEG00000009471) #21	SALL1 (ENSMLEG00000036406) #22	CYLD (ENSMLEG00000005317) #23	NOD2 (ENSMLEG00000036716) #24	SNX20 (ENSMLEG00000036378) #25	NKD1 (ENSMLEG00000032515) #26	BRD7 (ENSMLEG00000041253) #27	ADCY7 (ENSMLEG00000015089) #28	TENT4B (ENSMLEG00000034283) #29
Olive baboon	MODERN SPECIES	9	SLC6A2 (ENSPANG00000018478) #8	LPCAT2 (ENSPANG00000006269) #9	MMP2 (ENSPANG00000006408) #10	IRX6 (ENSPANG00000024570) #11	IRX5 (ENSPANG00000007155) #12	IRX3 (ENSPANG00000041905) #14	ENSPANG00000017095	FTO (ENSPANG00000016386) #15	RPGRIP1L (ENSPANG00000015743) #16	AKTIP (ENSPANG00000018701) #17	RBL2 (ENSPANG00000021504) #18	CHD9 (ENSPANG00000019307) #19	CHD9NB (ENSPANG00000047104)	ENSPANG00000034612	TOX3 (ENSPANG00000016176) #21	SALL1 (ENSPANG00000024176) #22	CYLD (ENSPANG00000019153) #23	NOD2 (ENSPANG00000019150) #24	SNX20 (ENSPANG00000000812) #25	NKD1 (ENSPANG00000009782) #26	BRD7 (ENSPANG00000024571) #27	ADCY7 (ENSPANG00000011498) #28	TENT4B (ENSPANG00000006934) #29	HEATR3 (ENSPANG00000024573) #30	CNEP1R1 (ENSPANG00000016962) #31	ZNF423 (ENSPANG00000022231) #32	ENSPANG00000038448	C16orf78 (ENSPANG00000022694) #33	CBLN1 (ENSPANG00000009450) #34	ENSPANG00000051011	N4BP1 (ENSPANG00000007118) #35
Rhinopithecus	ANCESTRAL SPECIES	476														ENSGT00940000158043 #21	ENSGT01020000230346.C.c.a.b.a	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29
Black snub-nosed monkey	MODERN SPECIES	718														TOX3 (ENSRBIG00000043696) #21	ENSRBIG00000035141	SALL1 (ENSRBIG00000015707) #22	CYLD (ENSRBIG00000036085) #23	NOD2 (ENSRBIG00000014904) #24	SNX20 (ENSRBIG00000035946) #25	NKD1 (ENSRBIG00000032570) #26
Golden snub-nosed monkey	MODERN SPECIES	2960																SALL1 (ENSRROG00000035777) #22	CYLD (ENSRROG00000007505) #23
Platyrrhini	ANCESTRAL SPECIES	21	ENSGT00940000154623.e #7	ENSGT00940000154623.f #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.h ##31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Cebidae	ANCESTRAL SPECIES	21	ENSGT00940000154623.f #7	ENSGT00940000161596	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934.a #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.h ##31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Marmoset	MODERN SPECIES	12	IRX6 (ENSCJAG00000012962) #11	IRX5 (ENSCJAG00000012968) #12	ENSCJAG00000084160 #13	IRX3 (ENSCJAG00000001418) #14	FTO (ENSCJAG00000001425) #15	RPGRIP1L (ENSCJAG00000001445) #16	ENSCJAG00000001498 #17	RBL2 (ENSCJAG00000001518) #18	ENSCJAG00000038895	CHD9 (ENSCJAG00000001573) #19	ENSCJAG00000070155	ENSCJAG00000073882	TOX3 (ENSCJAG00000001731) #21	ENSCJAG00000040416	ENSCJAG00000073253	SALL1 (ENSCJAG00000001740) #22	CYLD (ENSCJAG00000001749) #23	ENSCJAG00000041425 #24	ENSCJAG00000057779	ENSCJAG00000060946	ENSCJAG00000078065	ENSCJAG00000075236	SNX20 (ENSCJAG00000001791) #25	NKD1 (ENSCJAG00000001801) #26	BRD7 (ENSCJAG00000001832) #27	ADCY7 (ENSCJAG00000001898) #28	TENT4B (ENSCJAG00000001932) #29	ENSCJAG00000075120	HEATR3 (ENSCJAG00000001972) #30	CNEP1R1 (ENSCJAG00000001997) ##31	ZNF423 (ENSCJAG00000011975) #32
Cebidae_a	ANCESTRAL SPECIES	95	ENSGT00940000154623.f #7	ENSGT00940000161596	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00910000146868 #13	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934.a #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576.g.a #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Capuchin	MODERN SPECIES	63	IRX5 (ENSCCAG00000035591) #12	ENSCCAG00000035759 #13	ENSCCAG00000033265	IRX3 (ENSCCAG00000029708) #14	FTO (ENSCCAG00000025984) #15	RPGRIP1L (ENSCCAG00000026356) #16	AKTIP (ENSCCAG00000034526) #17	RBL2 (ENSCCAG00000035540) #18	CHD9 (ENSCCAG00000036178) #19	ENSCCAG00000022180	ENSCCAG00000020240	TOX3 (ENSCCAG00000024480) #21	ENSCCAG00000022165	ENSCCAG00000022450	ENSCCAG00000021070	SALL1 (ENSCCAG00000001639) #22	CYLD (ENSCCAG00000030271) #23	NOD2 (ENSCCAG00000034885) #24	ENSCCAG00000026084	SNX20 (ENSCCAG00000036877) #25	NKD1 (ENSCCAG00000033942) #26	ENSCCAG00000011713	BRD7 (ENSCCAG00000023437) #27	ADCY7 (ENSCCAG00000023487) #28	TENT4B (ENSCCAG00000035345) #29	HEATR3 (ENSCCAG00000031847) #30	ENSCCAG00000035613 ##31	ZNF423 (ENSCCAG00000009645) #32	C16orf78 (ENSCCAG00000036138) #33	CBLN1 (ENSCCAG00000023628) #34	N4BP1 (ENSCCAG00000013512) #35
Bolivian squirrel monkey	MODERN SPECIES	133	SLC6A2 (ENSSBOG00000024899) #8	LPCAT2 (ENSSBOG00000025828) #9	MMP2 (ENSSBOG00000031949) #10	IRX6 (ENSSBOG00000035547) #11	IRX5 (ENSSBOG00000027403) #12	ENSSBOG00000030191 #13	ENSSBOG00000016301	IRX3 (ENSSBOG00000030739) #14	FTO (ENSSBOG00000031008) #15	RPGRIP1L (ENSSBOG00000029639) #16	ENSSBOG00000028267 #17	RBL2 (ENSSBOG00000035559) #18	CHD9 (ENSSBOG00000030240) #19	TOX3 (ENSSBOG00000031439) #21	ENSSBOG00000032298	SALL1 (ENSSBOG00000032186) #22	CYLD (ENSSBOG00000023333) #23	NOD2 (ENSSBOG00000024291) #24	ENSSBOG00000025917	SNX20 (ENSSBOG00000029064) #25	NKD1 (ENSSBOG00000033910) #26	ENSSBOG00000029661 #27	ADCY7 (ENSSBOG00000030162) #28	TENT4B (ENSSBOG00000020525) #29	HEATR3 (ENSSBOG00000026626) #30	CNEP1R1 (ENSSBOG00000000332) #31	ZNF423 (ENSSBOG00000029124) #32	C16orf78 (ENSSBOG00000024244) #33	CBLN1 (ENSSBOG00000028668) #34	N4BP1 (ENSSBOG00000019911) #35	SIAH1 (ENSSBOG00000027075) #37
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	968	ENSANAG00000032650 #7	SLC6A2 (ENSANAG00000023105) #8	LPCAT2 (ENSANAG00000028308) #9	MMP2 (ENSANAG00000029632) #10	IRX6 (ENSANAG00000021405) #11	IRX5 (ENSANAG00000030825) #12	ENSANAG00000037324 #13	IRX3 (ENSANAG00000024444) #14	FTO (ENSANAG00000036534) #15	RPGRIP1L (ENSANAG00000023174) #16	AKTIP (ENSANAG00000032426) #17	RBL2 (ENSANAG00000034864) #18	CHD9 (ENSANAG00000015630) #19	ENSANAG00000018076	TOX3 (ENSANAG00000033705) #21	SALL1 (ENSANAG00000027238) #22
Mas night monkey	MODERN SPECIES	1206			ENSANAG00000020179	NUDT11 (ENSANAG00000027486)	EZHIP (ENSANAG00000027291)	BMP15 (ENSANAG00000028806)	SHROOM4 (ENSANAG00000020629)	DGKK (ENSANAG00000024570)	ENSANAG00000035064	AKAP4 (ENSANAG00000033875)	CLCN5 (ENSANAG00000000063)	USP27X (ENSANAG00000019357)	PAGE4 (ENSANAG00000029457)	PAGE1 (ENSANAG00000024656)	ENSANAG00000037052	ENSANAG00000031014 #22	ENSANAG00000030824	ENSANAG00000029419	PPP1R3F (ENSANAG00000027387)	FOXP3 (ENSANAG00000036359)	CCDC22 (ENSANAG00000028058)	CACNA1F (ENSANAG00000020527)	SYP (ENSANAG00000034953)	PRICKLE3 (ENSANAG00000024859)	PLP2 (ENSANAG00000029245)	MAGIX (ENSANAG00000038043)	ENSANAG00000030473	WDR45 (ENSANAG00000036620)	CCDC120 (ENSANAG00000021812)	TFE3 (ENSANAG00000037525)	GRIPAP1 (ENSANAG00000036795)
Tarsier	MODERN SPECIES	4177																SALL1 (ENSTSYG00000029464) #22	CYLD (ENSTSYG00000008717) #23	NOD2 (ENSTSYG00000030355) #24	SNX20 (ENSTSYG00000037310) #25	NKD1 (ENSTSYG00000008581) #26	BRD7 (ENSTSYG00000003829) #27	ADCY7 (ENSTSYG00000034052) #28	ENSTSYG00000009001 #29	HEATR3 (ENSTSYG00000008392) #30	ENSTSYG00000027545 #31
Strepsirrhini	ANCESTRAL SPECIES	17	ENSGT00940000161596	ENSGT00940000154623 #7	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.q #37	ENSGT00530000063553.b.b
Lemuriformes	ANCESTRAL SPECIES	69				ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.q #37	ENSGT00530000063553.b.b
Lemuriformes_a	ANCESTRAL SPECIES	151														ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.q #37	ENSGT00530000063553.b.b
Coquerels sifaka	MODERN SPECIES	260													CHD9 (ENSPCOG00000028433) #19	ENSPCOG00000026724	TOX3 (ENSPCOG00000006464) #21	SALL1 (ENSPCOG00000028192) #22	CYLD (ENSPCOG00000028255) #23	NOD2 (ENSPCOG00000027246) #24	SNX20 (ENSPCOG00000024752) #25	NKD1 (ENSPCOG00000021629) #26	BRD7 (ENSPCOG00000017346) #27	ADCY7 (ENSPCOG00000024234) #28	TENT4B (ENSPCOG00000015505) #29	HEATR3 (ENSPCOG00000025339) #30	CNEP1R1 (ENSPCOG00000027939) #31	ZNF423 (ENSPCOG00000013159) #32
Mouse lemur	MODERN SPECIES	12	ENSMICG00000003822 #7	SLC6A2 (ENSMICG00000003810) #8	LPCAT2 (ENSMICG00000003798) #9	MMP2 (ENSMICG00000003792) #10	IRX6 (ENSMICG00000003780) #11	IRX5 (ENSMICG00000027848) #12	IRX3 (ENSMICG00000016860) #14	FTO (ENSMICG00000016837) #15	ENSMICG00000038175	RPGRIP1L (ENSMICG00000016808) #16	ENSMICG00000010810 #17	RBL2 (ENSMICG00000016772) #18	ENSMICG00000009260	CHD9 (ENSMICG00000016679) #19	TOX3 (ENSMICG00000014881) #21	SALL1 (ENSMICG00000036486) #22	CYLD (ENSMICG00000008179) #23	NOD2 (ENSMICG00000008172) #24	SNX20 (ENSMICG00000044589) #25	VPS35 (ENSMICG00000011393)	ORC6 (ENSMICG00000028393)	MYLK3 (ENSMICG00000046381)	C16orf87 (ENSMICG00000005922)	GPT2 (ENSMICG00000013187)	ENSMICG00000043798	DNAJA2 (ENSMICG00000017777)	NETO2 (ENSMICG00000029065)	ITFG1 (ENSMICG00000012296)	PHKB (ENSMICG00000012314)	ENSMICG00000036396	ENSMICG00000026987
Bushbaby	MODERN SPECIES	173	CES5A (ENSOGAG00000012524)	ENSOGAG00000014900	ENSOGAG00000012518	SLC6A2 (ENSOGAG00000004224) #8	LPCAT2 (ENSOGAG00000004221) #9	MMP2 (ENSOGAG00000030370) #10	IRX6 (ENSOGAG00000026649) #11	IRX5 (ENSOGAG00000004133) #12	IRX3 (ENSOGAG00000029236) #14	FTO (ENSOGAG00000005135) #15	RPGRIP1L (ENSOGAG00000005128) #16	AKTIP (ENSOGAG00000014495) #17	RBL2 (ENSOGAG00000014491) #18	CHD9 (ENSOGAG00000002110) #19	TOX3 (ENSOGAG00000009531) #21	SALL1 (ENSOGAG00000027316) #22	CYLD (ENSOGAG00000014666) #23	NOD2 (ENSOGAG00000014655) #24	SNX20 (ENSOGAG00000014652) #25	NKD1 (ENSOGAG00000024948) #26	BRD7 (ENSOGAG00000011289) #27	ADCY7 (ENSOGAG00000011284) #28	TENT4B (ENSOGAG00000011282) #29	HEATR3 (ENSOGAG00000011658) #30	CNEP1R1 (ENSOGAG00000015665) #31	ZNF423 (ENSOGAG00000029813) #32	C16orf78 (ENSOGAG00000012618) #33	CBLN1 (ENSOGAG00000026093) #34	N4BP1 (ENSOGAG00000012341) #35	ENSOGAG00000027052 #37	LONP2 (ENSOGAG00000000674)
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00390000008759	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Tree shrew	MODERN SPECIES	7676																ENSTBEG00000002119 #22
Glires	ANCESTRAL SPECIES	6	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000155938 #22
Pika	MODERN SPECIES	5829																SALL1 (ENSOPRG00000005645) #22
Rodentia	ANCESTRAL SPECIES	8	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000158564.c.a	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Hystricomorpha	ANCESTRAL SPECIES	22	ENSGT00940000158564.d	ENSGT00940000158564.c.a.a	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090
Hystricomorpha_a	ANCESTRAL SPECIES	22	ENSGT00940000154623.j.b #7	ENSGT00940000154623.i.a #7	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090
Hystricomorpha_b	ANCESTRAL SPECIES	15	ENSGT00940000154623.j.a #7	ENSGT00940000154623.i.a #7	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT01030000235152	ENSGT00390000003175.a.b	ENSGT00940000162090
Long-tailed chinchilla	MODERN SPECIES	140	CES1 (ENSCLAG00000005623) #7	ENSCLAG00000006039	SLC6A2 (ENSCLAG00000005787) #8	LPCAT2 (ENSCLAG00000004725) #9	MMP2 (ENSCLAG00000004390) #10	IRX6 (ENSCLAG00000008231) #11	IRX5 (ENSCLAG00000009884) #12	IRX3 (ENSCLAG00000013650) #14	FTO (ENSCLAG00000013952) #15	RPGRIP1L (ENSCLAG00000004568) #16	AKTIP (ENSCLAG00000006949) #17	RBL2 (ENSCLAG00000005451) #18	ENSCLAG00000005008	CHD9 (ENSCLAG00000007137) #19	TOX3 (ENSCLAG00000006478) #21	SALL1 (ENSCLAG00000006380) #22	CYLD (ENSCLAG00000010166) #23	NOD2 (ENSCLAG00000009024) #24	SNX20 (ENSCLAG00000008955) #25	NKD1 (ENSCLAG00000008184) #26	BRD7 (ENSCLAG00000007993) #27	ADCY7 (ENSCLAG00000006365) #28	TENT4B (ENSCLAG00000004921) #29	HEATR3 (ENSCLAG00000004335) #30	ENSCLAG00000003975 #31	ZNF423 (ENSCLAG00000007342) #32	ENSCLAG00000011514 #33	CBLN1 (ENSCLAG00000014044) #34	ENSCLAG00000013152	SEC31A (ENSCLAG00000011336)	SCD5 (ENSCLAG00000009253)
Degu	MODERN SPECIES	214													TOX3 (ENSODEG00000003744) #21	ENSODEG00000003720	ENSODEG00000003699	SALL1 (ENSODEG00000003685) #22	CYLD (ENSODEG00000003603) #23	NOD2 (ENSODEG00000003540) #24	SNX20 (ENSODEG00000003520) #25	NKD1 (ENSODEG00000003504) #26	ENSODEG00000018926	BRD7 (ENSODEG00000003460) #27	ADCY7 (ENSODEG00000002761) #28	TENT4B (ENSODEG00000002528) #29	HEATR3 (ENSODEG00000002446) #30	CNEP1R1 (ENSODEG00000002403) #31	ENSODEG00000018831	ZNF423 (ENSODEG00000002057) #32	ENSODEG00000001942 #33	CBLN1 (ENSODEG00000001925) #34	ENSODEG00000002724
Guinea pig	MODERN SPECIES	5	CDC16 (ENSCPOG00000005324)	UPF3A (ENSCPOG00000006824)	ENSCPOG00000032917 #7	SLC6A2 (ENSCPOG00000002271) #8	LPCAT2 (ENSCPOG00000002265) #9	MMP2 (ENSCPOG00000020846) #10	IRX6 (ENSCPOG00000013677) #11	IRX5 (ENSCPOG00000011984) #12	IRX3 (ENSCPOG00000034825) #14	FTO (ENSCPOG00000012935) #15	RPGRIP1L (ENSCPOG00000012922) #16	ENSCPOG00000006523	RBL2 (ENSCPOG00000006507) #18	CHD9 (ENSCPOG00000036544) #19	ENSCPOG00000003093	SALL1 (ENSCPOG00000006564) #22	CYLD (ENSCPOG00000010061) #23	NOD2 (ENSCPOG00000010054) #24	SNX20 (ENSCPOG00000031640) #25	NKD1 (ENSCPOG00000002660) #26	BRD7 (ENSCPOG00000015462) #27	ADCY7 (ENSCPOG00000003271) #28	TENT4B (ENSCPOG00000011799) #29	HEATR3 (ENSCPOG00000013804) #30	CNEP1R1 (ENSCPOG00000036484) #31	ZNF423 (ENSCPOG00000000162) #32	ENSCPOG00000020523 #33	CBLN1 (ENSCPOG00000035039) #34	THAP9 (ENSCPOG00000030627)	SEC31A (ENSCPOG00000007967)	SCD5 (ENSCPOG00000003242)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	26	LPCAT2 (ENSHGLG00000006950) #9	MMP2 (ENSHGLG00000003708) #10	IRX6 (ENSHGLG00000003805) #11	IRX5 (ENSHGLG00000004006) #12	IRX3 (ENSHGLG00000004630) #14	FTO (ENSHGLG00000005386) #15	ENSHGLG00000050695	RPGRIP1L (ENSHGLG00000008154) #16	AKTIP (ENSHGLG00000008426) #17	RBL2 (ENSHGLG00000012893) #18	ENSHGLG00000014938 #19	ENSHGLG00000003452	ENSHGLG00000003522	ENSHGLG00000003699	ENSHGLG00000046400 #21	ENSHGLG00000004288 #22	ENSHGLG00000005762 #23	NOD2 (ENSHGLG00000003967) #24	SNX20 (ENSHGLG00000004254) #25	NKD1 (ENSHGLG00000041852) #26	BRD7 (ENSHGLG00000005800) #27	ADCY7 (ENSHGLG00000006152) #28	TENT4B (ENSHGLG00000004206) #29	HEATR3 (ENSHGLG00000004488) #30	CNEP1R1 (ENSHGLG00000046645) #31	ENSHGLG00000021434	ZNF423 (ENSHGLG00000007674) #32	ENSHGLG00000008302 #33	CBLN1 (ENSHGLG00000039996) #34	ENSHGLG00000014792	ENSHGLG00000045263
Naked mole-rat female	MODERN SPECIES	5	HOXA13 (ENSHGLG00000039960)	EVX1 (ENSHGLG00000005868)	HIBADH (ENSHGLG00000005354)	ENSHGLG00000047390	ENSHGLG00000016256	JAZF1 (ENSHGLG00000049016)	ENSHGLG00000016063	CREB5 (ENSHGLG00000018417)	TRIL (ENSHGLG00000037451)	CPVL (ENSHGLG00000016195)	CHN2 (ENSHGLG00000033880)	ENSHGLG00000017765	PRR15 (ENSHGLG00000047965)	SCRN1 (ENSHGLG00000008257)	FKBP14 (ENSHGLG00000006567)	ENSHGLG00000007305 #22	PLEKHA8 (ENSHGLG00000005404)	ENSHGLG00000011844	MTURN (ENSHGLG00000044384)	ENSHGLG00000016122	ZNRF2 (ENSHGLG00000039084)	ENSHGLG00000032561	GGCT (ENSHGLG00000034422)	GARS1 (ENSHGLG00000016342)	CRHR2 (ENSHGLG00000018699)	ENSHGLG00000049417	INMT (ENSHGLG00000035929)	MINDY4 (ENSHGLG00000004247)	AQP1 (ENSHGLG00000045736)	ENSHGLG00000035477	ADCYAP1R1 (ENSHGLG00000005424)
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000158564.c.a.c.a	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000175746.a.a
Marmotini	ANCESTRAL SPECIES	17	ENSGT00940000158564.c.a.c.a	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000175746.a.a.a
Marmotini_b	ANCESTRAL SPECIES	7	ENSGT00940000158564.c.a.c.a	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000175746.a.a.a
Arctic ground squirrel	MODERN SPECIES	99	ENSUPAG00010015119	ENSUPAG00010014531	SLC6A2 (ENSUPAG00010014487) #8	LPCAT2 (ENSUPAG00010014437) #9	MMP2 (ENSUPAG00010014403) #10	IRX6 (ENSUPAG00010014372) #11	IRX5 (ENSUPAG00010014365) #12	IRX3 (ENSUPAG00010014349) #14	FTO (ENSUPAG00010014295) #15	RPGRIP1L (ENSUPAG00010014243) #16	AKTIP (ENSUPAG00010014223) #17	RBL2 (ENSUPAG00010014149) #18	CHD9 (ENSUPAG00010014099) #19	CHD9NB (ENSUPAG00010014093)	TOX3 (ENSUPAG00010014088) #21	SALL1 (ENSUPAG00010014078) #22	CYLD (ENSUPAG00010013856) #23	NOD2 (ENSUPAG00010013810) #24	SNX20 (ENSUPAG00010013805) #25	NKD1 (ENSUPAG00010013779) #26	ENSUPAG00010013770	BRD7 (ENSUPAG00010013735) #27	ADCY7 (ENSUPAG00010013680) #28	TENT4B (ENSUPAG00010013654) #29	ENSUPAG00010013643	ENSUPAG00010013639	HEATR3 (ENSUPAG00010013623) #30	CNEP1R1 (ENSUPAG00010013602) #31
Squirrel	MODERN SPECIES	75	ENSSTOG00000022544	ENSSTOG00000011565	ENSSTOG00000027091	SLC6A2 (ENSSTOG00000011549) #8	LPCAT2 (ENSSTOG00000011536) #9	MMP2 (ENSSTOG00000022615) #10	IRX6 (ENSSTOG00000015121) #11	IRX5 (ENSSTOG00000023408) #12	IRX3 (ENSSTOG00000019902) #14	FTO (ENSSTOG00000023410) #15	RPGRIP1L (ENSSTOG00000012672) #16	AKTIP (ENSSTOG00000008656) #17	RBL2 (ENSSTOG00000008636) #18	CHD9 (ENSSTOG00000022273) #19	TOX3 (ENSSTOG00000009587) #21	SALL1 (ENSSTOG00000020885) #22	CYLD (ENSSTOG00000010194) #23	NOD2 (ENSSTOG00000025139) #24	SNX20 (ENSSTOG00000031296) #25	NKD1 (ENSSTOG00000027729) #26	BRD7 (ENSSTOG00000024547) #27	ADCY7 (ENSSTOG00000001199) #28	ENSSTOG00000001196 #29	HEATR3 (ENSSTOG00000001183) #30	CNEP1R1 (ENSSTOG00000001179) #31	ZNF423 (ENSSTOG00000028569) #32	ENSSTOG00000005303 #33	CBLN1 (ENSSTOG00000027557) #34	N4BP1 (ENSSTOG00000006205) #35	SIAH1 (ENSSTOG00000008805) #37	LONP2 (ENSSTOG00000008780)
Alpin marmot	MODERN SPECIES	23	ENSMMMG00000011414	ENSMMMG00000011513	SLC6A2 (ENSMMMG00000011536) #8	LPCAT2 (ENSMMMG00000011587) #9	MMP2 (ENSMMMG00000011634) #10	IRX6 (ENSMMMG00000011652) #11	IRX5 (ENSMMMG00000011673) #12	IRX3 (ENSMMMG00000011681) #14	FTO (ENSMMMG00000011704) #15	RPGRIP1L (ENSMMMG00000011727) #16	AKTIP (ENSMMMG00000011767) #17	RBL2 (ENSMMMG00000011833) #18	CHD9 (ENSMMMG00000012811) #19	CHD9NB (ENSMMMG00000012935)	TOX3 (ENSMMMG00000012986) #21	SALL1 (ENSMMMG00000013047) #22	CYLD (ENSMMMG00000013093) #23	NOD2 (ENSMMMG00000013415) #24	SNX20 (ENSMMMG00000013445) #25	NKD1 (ENSMMMG00000013451) #26	BRD7 (ENSMMMG00000013473) #27	ADCY7 (ENSMMMG00000013505) #28	ENSMMMG00000014304 #29	HEATR3 (ENSMMMG00000014311) #30	CNEP1R1 (ENSMMMG00000014341) #31	ZNF423 (ENSMMMG00000014383) #32	ENSMMMG00000014403 #33	CBLN1 (ENSMMMG00000014438) #34	N4BP1 (ENSMMMG00000014453) #35	ENSMMMG00000014456	ENSMMMG00000014468
Eurasian red squirrel	MODERN SPECIES	8	SLC6A2 (ENSSVLG00005025519) #8	LPCAT2 (ENSSVLG00005025612) #9	MMP2 (ENSSVLG00005025625) #10	IRX6 (ENSSVLG00005025641) #11	IRX5 (ENSSVLG00005025650) #12	IRX3 (ENSSVLG00005025657) #14	FTO (ENSSVLG00005025671) #15	ENSSVLG00005025681	RPGRIP1L (ENSSVLG00005025692) #16	ENSSVLG00005025703 #17	RBL2 (ENSSVLG00005025712) #18	CHD9 (ENSSVLG00005025759) #19	CHD9NB (ENSSVLG00005025793)	ENSSVLG00005025795	TOX3 (ENSSVLG00005025797) #21	SALL1 (ENSSVLG00005025799) #22	CYLD (ENSSVLG00005025804) #23	NOD2 (ENSSVLG00005025812) #24	SNX20 (ENSSVLG00005025820) #25	NKD1 (ENSSVLG00005025829) #26	ENSSVLG00005025838 #27	ADCY7 (ENSSVLG00005025857) #28	TENT4B (ENSSVLG00005025875) #29	HEATR3 (ENSSVLG00005025878) #30	ENSSVLG00005025884 #31	ENSSVLG00005025890	ENSSVLG00005025893	ENSSVLG00005025899	ZNF423 (ENSSVLG00005016875) #32	ENSSVLG00005016966 #33	CBLN1 (ENSSVLG00005017023) #34
Rodentia_B	ANCESTRAL SPECIES	21	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Kangaroo rat	MODERN SPECIES	425	Slc6a2 (ENSDORG00000009330) #8	Capns2 (ENSDORG00000027062)	Lpcat2 (ENSDORG00000013193) #9	ENSDORG00000013188 #10	Irx6 (ENSDORG00000012265) #11	Irx5 (ENSDORG00000005903) #12	Irx3 (ENSDORG00000011798) #14	Fto (ENSDORG00000009325) #15	ENSDORG00000023916	Rpgrip1l (ENSDORG00000009323) #16	Aktip (ENSDORG00000009519) #17	Rbl2 (ENSDORG00000009516) #18	ENSDORG00000008523 #19	ENSDORG00000026215 #19	Tox3 (ENSDORG00000003305) #21	ENSDORG00000004249 #22	Cyld (ENSDORG00000004192) #23	Nod2 (ENSDORG00000026607) #24	ENSDORG00000029324 #25	Nkd1 (ENSDORG00000008529) #26	Brd7 (ENSDORG00000010508) #27	Adcy7 (ENSDORG00000010503) #28	Tent4b (ENSDORG00000000031) #29	Heatr3 (ENSDORG00000004409) #30	ENSDORG00000026472 #31	Zfp423 (ENSDORG00000023772) #32	ENSDORG00000001017 #33	Cbln1 (ENSDORG00000025356) #34	ENSDORG00000024454	N4bp1 (ENSDORG00000002154) #35	ENSDORG00000025633 #37
Myomorpha	ANCESTRAL SPECIES	22	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Muroidea	ANCESTRAL SPECIES	19	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.a #37	ENSGT00530000063553.b.b
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00390000015797.d	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.a #37	ENSGT00530000063553.b.b
Cricetinae	DUPLICATION
Cricetinae	ANCESTRAL SPECIES	16	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00390000015797.d	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.s #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.a #37	ENSGT00530000063553.b.b
Chinese hamster chok1gshd	MODERN SPECIES	112	Irx6 (ENSCGRG00001005135) #11	ENSCGRG00001021640	Irx5 (ENSCGRG00001019317) #12	Irx3 (ENSCGRG00001022254) #14	Fto (ENSCGRG00001013545) #15	Rpgrip1l (ENSCGRG00001020196) #16	ENSCGRG00001013457	ENSCGRG00001024361 #17	Rbl2 (ENSCGRG00001012793) #18	Chd9 (ENSCGRG00001016150) #19	ENSCGRG00001012667	Gm19935 (ENSCGRG00001012263)	ENSCGRG00001010471	ENSCGRG00001001946	Tox3 (ENSCGRG00001021816) #21	ENSCGRG00001023314 #22	ENSCGRG00001019423	Cyld (ENSCGRG00001000533) #23	Nod2 (ENSCGRG00001011531) #24	Snx20 (ENSCGRG00001020312) #25	Nkd1 (ENSCGRG00001011787) #26	Brd7 (ENSCGRG00001003449) #27	Adcy7 (ENSCGRG00001014504) #28	Tent4b (ENSCGRG00001023597) #29	Heatr3 (ENSCGRG00001024755) #30	Cnep1r1 (ENSCGRG00001009199) #31	Zfp423 (ENSCGRG00001023063) #32	4933402J07Rik (ENSCGRG00001021069) #33	Cbln1 (ENSCGRG00001018308) #34	N4bp1 (ENSCGRG00001014095) #35	Siah1b (ENSCGRG00001006463) #37
Golden Hamster	MODERN SPECIES	706	ENSMAUG00000013993 #7	Ces1a (ENSMAUG00000011697)	Slc6a2 (ENSMAUG00000004570) #8	Lpcat2 (ENSMAUG00000016612) #9	Mmp2 (ENSMAUG00000010513) #10	Irx6 (ENSMAUG00000009996) #11	Irx5 (ENSMAUG00000007656) #12	Irx3 (ENSMAUG00000017323) #14	Fto (ENSMAUG00000000439) #15	Rpgrip1l (ENSMAUG00000017292) #16	Rbl2 (ENSMAUG00000014633) #18	ENSMAUG00000000526 #19	ENSMAUG00000011087 #19	ENSMAUG00000018971	Tox3 (ENSMAUG00000000550) #21	Sall1 (ENSMAUG00000019093) #22	ENSMAUG00000018753	Cyld (ENSMAUG00000001344) #23	Nod2 (ENSMAUG00000004325) #24	Snx20 (ENSMAUG00000020254) #25	Nkd1 (ENSMAUG00000000515) #26	Brd7 (ENSMAUG00000000695) #27	Adcy7 (ENSMAUG00000005638) #28	Tent4b (ENSMAUG00000018042) #29	Heatr3 (ENSMAUG00000020748) #30	Cnep1r1 (ENSMAUG00000012481) #31	ENSMAUG00000013750	Zfp423 (ENSMAUG00000015448) #32	ENSMAUG00000019410	ENSMAUG00000015721	4933402J07Rik (ENSMAUG00000017355) #33
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000155938.t #22
Chinese hamster chok1gshd	MODERN SPECIES	66							Gbp2 (ENSCGRG00001023495)	Gbp3 (ENSCGRG00001022090)	Gbp7 (ENSCGRG00001000702)	Gbp5 (ENSCGRG00001014326)	Pdlim5 (ENSCGRG00001025015)	Bmpr1b (ENSCGRG00001019865)	Unc5c (ENSCGRG00001024324)	Pdha2 (ENSCGRG00001012024)	Stpg2 (ENSCGRG00001011952)	ENSCGRG00001006395 #22	Rap1gds1 (ENSCGRG00001017066)	Tspan5 (ENSCGRG00001001260)	ENSCGRG00001000181	Metap1 (ENSCGRG00001002302)	Adh5 (ENSCGRG00001000437)	Adh6b (ENSCGRG00001011022)	ENSCGRG00001012224	Adh6a (ENSCGRG00001013383)	ENSCGRG00001000595	ENSCGRG00001017351	Adh7 (ENSCGRG00001008109)	4930579F01Rik (ENSCGRG00001000415)	Trmt10a (ENSCGRG00001020257)	Mttp (ENSCGRG00001013195)	1110002E22Rik (ENSCGRG00001005404)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00390000015797.d	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.a #37	ENSGT00530000063553.b.b
Northern American deer mouse	MODERN SPECIES	18	Lpcat2 (ENSPEMG00000024158) #9	Mmp2 (ENSPEMG00000023486) #10	Irx6 (ENSPEMG00000022413) #11	Irx5 (ENSPEMG00000021761) #12	Irx3 (ENSPEMG00000022357) #14	Fto (ENSPEMG00000021137) #15	Rpgrip1l (ENSPEMG00000021815) #16	Aktip (ENSPEMG00000022468) #17	Rbl2 (ENSPEMG00000021671) #18	Chd9 (ENSPEMG00000021464) #19	ENSPEMG00000028298	Gm19935 (ENSPEMG00000026446)	Tox3 (ENSPEMG00000019689) #21	ENSPEMG00000026839	ENSPEMG00000005035	Sall1 (ENSPEMG00000012331) #22	Cyld (ENSPEMG00000011322) #23	Nod2 (ENSPEMG00000016933) #24	Snx20 (ENSPEMG00000015231) #25	Nkd1 (ENSPEMG00000028031) #26	Brd7 (ENSPEMG00000015843) #27	Adcy7 (ENSPEMG00000018675) #28	Tent4b (ENSPEMG00000029372) #29	Heatr3 (ENSPEMG00000016174) #30	Cnep1r1 (ENSPEMG00000017702) #31	ENSPEMG00000002704	Zfp423 (ENSPEMG00000015523) #32	4933402J07Rik (ENSPEMG00000016843) #33	Cbln1 (ENSPEMG00000029511) #34	N4bp1 (ENSPEMG00000016429) #35	Siah1b (ENSPEMG00000008065) #37
Prairie vole	MODERN SPECIES	98														Tox3 (ENSMOCG00000019988) #21	ENSMOCG00000004921	ENSMOCG00000002231 #22	ENSMOCG00000009848	Nod2 (ENSMOCG00000021721) #24	Snx20 (ENSMOCG00000015078) #25	Nkd1 (ENSMOCG00000019054) #26	Brd7 (ENSMOCG00000022495) #27	Adcy7 (ENSMOCG00000000434) #28	ENSMOCG00000016736	Tent4b (ENSMOCG00000013042) #29	Heatr3 (ENSMOCG00000019132) #30	ENSMOCG00000019184 #31	Zfp423 (ENSMOCG00000002689) #32	4933402J07Rik (ENSMOCG00000020575) #33	Cbln1 (ENSMOCG00000003934) #34	ENSMOCG00000017947	N4bp1 (ENSMOCG00000016652) #35
Murinae	ANCESTRAL SPECIES	15	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.b #37	ENSGT00530000063553.b.b
Mus	ANCESTRAL SPECIES	6	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.b #37	ENSGT00530000063553.b.b
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00900000143414	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.b #37	ENSGT00860000136300
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00900000143414	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.b #37	ENSGT00860000136300
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000158564.c.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00900000143414	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.y.b #37	ENSGT00860000136300
spretus	MODERN SPECIES	17	Slc6a2 (MGP_SPRETEiJ_G0032495) #8	Capns2 (MGP_SPRETEiJ_G0032494)	Lpcat2 (MGP_SPRETEiJ_G0032493) #9	Mmp2 (MGP_SPRETEiJ_G0032492) #10	Irx6 (MGP_SPRETEiJ_G0032491) #11	Irx5 (MGP_SPRETEiJ_G0032490) #12	Irx3 (MGP_SPRETEiJ_G0032489) #14	Fto (MGP_SPRETEiJ_G0032488) #15	Rpgrip1l (MGP_SPRETEiJ_G0032487) #16	Aktip (MGP_SPRETEiJ_G0032486) #17	Rbl2 (MGP_SPRETEiJ_G0032485) #18	MGP_SPRETEiJ_G0032484	Chd9 (MGP_SPRETEiJ_G0032483) #19	Tox3 (MGP_SPRETEiJ_G0032482) #21	MGP_SPRETEiJ_G0032481	Sall1 (MGP_SPRETEiJ_G0032480) #22	Cyld (MGP_SPRETEiJ_G0032479) #23	Nod2 (MGP_SPRETEiJ_G0032478) #24	Snx20 (MGP_SPRETEiJ_G0032477) #25	Nkd1 (MGP_SPRETEiJ_G0032476) #26	Brd7 (MGP_SPRETEiJ_G0032475) #27	Adcy7 (MGP_SPRETEiJ_G0032474) #28	Tent4b (MGP_SPRETEiJ_G0032473) #29	Heatr3 (MGP_SPRETEiJ_G0032472) #30	Cnep1r1 (MGP_SPRETEiJ_G0032471) #31	Zfp423 (MGP_SPRETEiJ_G0032470) #32	4933402J07Rik (MGP_SPRETEiJ_G0032469) #33	Cbln1 (MGP_SPRETEiJ_G0032468) #34	N4bp1 (MGP_SPRETEiJ_G0032467) #35	MGP_SPRETEiJ_G0032466	MGP_SPRETEiJ_G0032465 #37
Steppe mouse	MODERN SPECIES	3333	Mmp2 (ENSMSIG00000022035) #10	Irx6 (ENSMSIG00000022060) #11	ENSMSIG00000022098 #12	ENSMSIG00000022154	Irx3 (ENSMSIG00000022187) #14	Fto (ENSMSIG00000022229) #15	Rpgrip1l (ENSMSIG00000022275) #16	Rbl2 (ENSMSIG00000022400) #18	Aktip (ENSMSIG00000022576) #17	Chd9 (ENSMSIG00000022627) #19	Gm19935 (ENSMSIG00000022743)	ENSMSIG00000022761	Tox3 (ENSMSIG00000022770) #21	ENSMSIG00000022804	ENSMSIG00000022807	Sall1 (ENSMSIG00000022842) #22	Cyld (ENSMSIG00000022860) #23	Nod2 (ENSMSIG00000023038) #24	Snx20 (ENSMSIG00000023092) #25	Nkd1 (ENSMSIG00000023101) #26	Brd7 (ENSMSIG00000023142) #27	Adcy7 (ENSMSIG00000023201) #28
Mouse	MODERN SPECIES	17	Ces1a (ENSMUSG00000071047)	Slc6a2 (ENSMUSG00000055368) #8	Capns2 (ENSMUSG00000078144)	Lpcat2 (ENSMUSG00000033192) #9	Mmp2 (ENSMUSG00000031740) #10	Irx6 (ENSMUSG00000031738) #11	Irx5 (ENSMUSG00000031737) #12	Irx3 (ENSMUSG00000031734) #14	Fto (ENSMUSG00000055932) #15	Rpgrip1l (ENSMUSG00000033282) #16	Aktip (ENSMUSG00000031667) #17	Rbl2 (ENSMUSG00000031666) #18	Chd9 (ENSMUSG00000056608) #19	Gm19935 (ENSMUSG00000110332)	Tox3 (ENSMUSG00000043668) #21	Sall1 (ENSMUSG00000031665) #22	Cyld (ENSMUSG00000036712) #23	Nod2 (ENSMUSG00000055994) #24	Snx20 (ENSMUSG00000031662) #25	Nkd1 (ENSMUSG00000031661) #26	Brd7 (ENSMUSG00000031660) #27	Adcy7 (ENSMUSG00000031659) #28	Tent4b (ENSMUSG00000036779) #29	Heatr3 (ENSMUSG00000031657) #30	Cnep1r1 (ENSMUSG00000036810) #31	Zfp423 (ENSMUSG00000045333) #32	4933402J07Rik (ENSMUSG00000069971) #33	Cbln1 (ENSMUSG00000031654) #34	N4bp1 (ENSMUSG00000031652) #35	Siah1a (ENSMUSG00000036840) #37	Lonp2 (ENSMUSG00000047866)
Ryukyu mouse	MODERN SPECIES	17	Ces1a (MGP_CAROLIEiJ_G0031377)	Slc6a2 (MGP_CAROLIEiJ_G0031376) #8	Capns2 (MGP_CAROLIEiJ_G0031375)	Lpcat2 (MGP_CAROLIEiJ_G0031374) #9	Mmp2 (MGP_CAROLIEiJ_G0031373) #10	Irx6 (MGP_CAROLIEiJ_G0031372) #11	Irx5 (MGP_CAROLIEiJ_G0031371) #12	Irx3 (MGP_CAROLIEiJ_G0031370) #14	Fto (MGP_CAROLIEiJ_G0031369) #15	Rpgrip1l (MGP_CAROLIEiJ_G0031368) #16	Aktip (MGP_CAROLIEiJ_G0031367) #17	Rbl2 (MGP_CAROLIEiJ_G0031366) #18	MGP_CAROLIEiJ_G0031365	Chd9 (MGP_CAROLIEiJ_G0031364) #19	Tox3 (MGP_CAROLIEiJ_G0031363) #21	Sall1 (MGP_CAROLIEiJ_G0031362) #22	Cyld (MGP_CAROLIEiJ_G0031361) #23	Nod2 (MGP_CAROLIEiJ_G0031360) #24	Snx20 (MGP_CAROLIEiJ_G0031359) #25	Nkd1 (MGP_CAROLIEiJ_G0031358) #26	Brd7 (MGP_CAROLIEiJ_G0031357) #27	Adcy7 (MGP_CAROLIEiJ_G0031356) #28	Tent4b (MGP_CAROLIEiJ_G0031355) #29	Heatr3 (MGP_CAROLIEiJ_G0031354) #30	Cnep1r1 (MGP_CAROLIEiJ_G0031353) #31	Zfp423 (MGP_CAROLIEiJ_G0031352) #32	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #33	Cbln1 (MGP_CAROLIEiJ_G0031350) #34	N4bp1 (MGP_CAROLIEiJ_G0031349) #35	MGP_CAROLIEiJ_G0031348	MGP_CAROLIEiJ_G0031347 #37
Shrew mouse	MODERN SPECIES	12	Ces1a (MGP_PahariEiJ_G0022976)	Slc6a2 (MGP_PahariEiJ_G0022975) #8	Capns2 (MGP_PahariEiJ_G0022974)	Lpcat2 (MGP_PahariEiJ_G0022973) #9	Mmp2 (MGP_PahariEiJ_G0022972) #10	Irx6 (MGP_PahariEiJ_G0022971) #11	Irx5 (MGP_PahariEiJ_G0022970) #12	Irx3 (MGP_PahariEiJ_G0022969) #14	Fto (MGP_PahariEiJ_G0022968) #15	Rpgrip1l (MGP_PahariEiJ_G0022967) #16	Aktip (MGP_PahariEiJ_G0022966) #17	Rbl2 (MGP_PahariEiJ_G0022965) #18	Chd9 (MGP_PahariEiJ_G0022964) #19	MGP_PahariEiJ_G0022963	Tox3 (MGP_PahariEiJ_G0022962) #21	Sall1 (MGP_PahariEiJ_G0022961) #22	Cyld (MGP_PahariEiJ_G0022960) #23	Nod2 (MGP_PahariEiJ_G0022959) #24	Snx20 (MGP_PahariEiJ_G0022958) #25	Nkd1 (MGP_PahariEiJ_G0022957) #26	Brd7 (MGP_PahariEiJ_G0022956) #27	Adcy7 (MGP_PahariEiJ_G0022955) #28	Tent4b (MGP_PahariEiJ_G0022954) #29	Zfp423 (MGP_PahariEiJ_G0022953) #32	4933402J07Rik (MGP_PahariEiJ_G0022952) #33	Cbln1 (MGP_PahariEiJ_G0022951) #34	N4bp1 (MGP_PahariEiJ_G0022950) #35	Siah1a (MGP_PahariEiJ_G0022949) #37	Lonp2 (MGP_PahariEiJ_G0022948)	Abcc12 (MGP_PahariEiJ_G0022947)	Phkb (MGP_PahariEiJ_G0022946)
Rat	MODERN SPECIES	10	Ces1c (ENSRNOG00000069004)	Ces1a (ENSRNOG00000039725)	Slc6a2 (ENSRNOG00000016311) #8	Lpcat2 (ENSRNOG00000016643) #9	Mmp2 (ENSRNOG00000016695) #10	Irx6 (ENSRNOG00000011037) #11	Irx5 (ENSRNOG00000011180) #12	Irx3 (ENSRNOG00000011533) #14	Fto (ENSRNOG00000011728) #15	Rpgrip1l (ENSRNOG00000011829) #16	Aktip (ENSRNOG00000011956) #17	Rbl2 (ENSRNOG00000012153) #18	Chd9 (ENSRNOG00000049302) #19	Tox3 (ENSRNOG00000028649) #21	ENSRNOG00000069574	Sall1 (ENSRNOG00000013907) #22	Cyld (ENSRNOG00000014048) #23	Nod2 (ENSRNOG00000014124) #24	Snx20 (ENSRNOG00000014202) #25	Nkd1 (ENSRNOG00000014293) #26	Brd7 (ENSRNOG00000014419) #27	Adcy7 (ENSRNOG00000014776) #28	Tent4b (ENSRNOG00000024212) #29	Heatr3 (ENSRNOG00000015459) #30	Cnep1r1 (ENSRNOG00000015534) #31	Zfp423 (ENSRNOG00000014658) #32	LOC680913 (ENSRNOG00000024182) #33	Cbln1 (ENSRNOG00000000010) #34	Rps15a-ps3 (ENSRNOG00000055046)	N4bp1 (ENSRNOG00000015121) #35	Siah1 (ENSRNOG00000015143) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	608																ENSNGAG00000014092 #22
Lesser Egyptian jerboa	MODERN SPECIES	114	Ces1a (ENSJJAG00000012358)	Slc6a2 (ENSJJAG00000022105) #8	Lpcat2 (ENSJJAG00000001079) #9	Mmp2 (ENSJJAG00000010703) #10	Irx6 (ENSJJAG00000003082) #11	Irx5 (ENSJJAG00000016102) #12	Irx3 (ENSJJAG00000021503) #14	Fto (ENSJJAG00000013186) #15	Rpgrip1l (ENSJJAG00000021992) #16	Aktip (ENSJJAG00000007409) #17	Rbl2 (ENSJJAG00000021032) #18	ENSJJAG00000015741 #19	ENSJJAG00000010948 #19	ENSJJAG00000015094	Tox3 (ENSJJAG00000022737) #21	ENSJJAG00000022677 #22	Cyld (ENSJJAG00000013829) #23	Nod2 (ENSJJAG00000017441) #24	Snx20 (ENSJJAG00000022175) #25	Nkd1 (ENSJJAG00000016347) #26	Brd7 (ENSJJAG00000024144) #27	Adcy7 (ENSJJAG00000010449) #28	Tent4b (ENSJJAG00000015670) #29	Heatr3 (ENSJJAG00000016795) #30	Cnep1r1 (ENSJJAG00000016846) #31	Zfp423 (ENSJJAG00000019328) #32	4933402J07Rik (ENSJJAG00000013910) #33	Cbln1 (ENSJJAG00000021584) #34	N4bp1 (ENSJJAG00000017340) #35	ENSJJAG00000016189 #37	ENSJJAG00000022493
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00390000008759	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155938 #22
Common shrew	MODERN SPECIES	337																SALL1 (ENSSARG00000000661) #22
Hedgehog	MODERN SPECIES	15961																SALL1 (ENSEEUG00000002014) #22
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Suina	ANCESTRAL SPECIES	2	ENSGT00940000154623.k #7	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Chacoan peccary	MODERN SPECIES	106	ENSCWAG00000010543 #7	ENSCWAG00000009471	SLC6A2 (ENSCWAG00000008247) #8	LPCAT2 (ENSCWAG00000008045) #9	MMP2 (ENSCWAG00000007874) #10	IRX6 (ENSCWAG00000007821) #11	IRX5 (ENSCWAG00000003331) #12	IRX3 (ENSCWAG00000003322) #14	FTO (ENSCWAG00000003286) #15	RPGRIP1L (ENSCWAG00000003236) #16	AKTIP (ENSCWAG00000003213) #17	RBL2 (ENSCWAG00000003187) #18	CHD9 (ENSCWAG00000003020) #19	CHD9NB (ENSCWAG00000002973)	TOX3 (ENSCWAG00000002960) #21	SALL1 (ENSCWAG00000002947) #22	CYLD (ENSCWAG00000002909) #23	NOD2 (ENSCWAG00000002862) #24	SNX20 (ENSCWAG00000002848) #25	NKD1 (ENSCWAG00000002836) #26	BRD7 (ENSCWAG00000002824) #27
Pig	MODERN SPECIES	14	SLC6A2 (ENSSSCG00000002827) #8	LPCAT2 (ENSSSCG00000002828) #9	MMP2 (ENSSSCG00000002829) #10	IRX6 (ENSSSCG00000002830) #11	IRX5 (ENSSSCG00000032145) #12	IRX3 (ENSSSCG00000002831) #14	FTO (ENSSSCG00000035949) #15	RPGRIP1L (ENSSSCG00000031652) #16	AKTIP (ENSSSCG00000026181) #17	RBL2 (ENSSSCG00000032648) #18	CHD9 (ENSSSCG00000033591) #19	ENSSSCG00000043977	CHD9NB (ENSSSCG00000055857)	ENSSSCG00000058098	TOX3 (ENSSSCG00000002835) #21	SALL1 (ENSSSCG00000002836) #22	CYLD (ENSSSCG00000040286) #23	NOD2 (ENSSSCG00000038073) #24	SNX20 (ENSSSCG00000025741) #25	NKD1 (ENSSSCG00000039875) #26	BRD7 (ENSSSCG00000021644) #27	ADCY7 (ENSSSCG00000039408) #28	TENT4B (ENSSSCG00000062607) #29	HEATR3 (ENSSSCG00000040887) #30	CNEP1R1 (ENSSSCG00000036005) #31	ZNF423 (ENSSSCG00000002838) #32	C16orf78 (ENSSSCG00000002839) #33	CBLN1 (ENSSSCG00000040652) #34	N4BP1 (ENSSSCG00000002841) #35	SIAH1 (ENSSSCG00000037263) #37	LONP2 (ENSSSCG00000023391)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000166964	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000012524.a.b	ENSGT00940000158682 #35
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000012524.a.b	ENSGT00940000158682 #35
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00950000182967.a.a.a.a.a.a.m.b.b.b.a	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000012524.a.b	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Dolphin	MODERN SPECIES	2948																SALL1 (ENSTTRG00000015152) #22	CYLD (ENSTTRG00000015136) #23
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00950000182967.a.a.a.a.a.a.m.b.b.b.a	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000012524.a.b	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Vaquita	MODERN SPECIES	10	ENSPSNG00000018207	ENSPSNG00000018070	SLC6A2 (ENSPSNG00000017229) #8	LPCAT2 (ENSPSNG00000017054) #9	MMP2 (ENSPSNG00000016865) #10	IRX6 (ENSPSNG00000016785) #11	IRX5 (ENSPSNG00000016694) #12	IRX3 (ENSPSNG00000016643) #14	FTO (ENSPSNG00000016453) #15	RPGRIP1L (ENSPSNG00000016190) #16	AKTIP (ENSPSNG00000016106) #17	RBL2 (ENSPSNG00000016027) #18	CHD9 (ENSPSNG00000015827) #19	CHD9NB (ENSPSNG00000015748)	TOX3 (ENSPSNG00000015650) #21	SALL1 (ENSPSNG00000015573) #22	CYLD (ENSPSNG00000015466) #23	NOD2 (ENSPSNG00000015318) #24	SNX20 (ENSPSNG00000015147) #25	NKD1 (ENSPSNG00000015073) #26	BRD7 (ENSPSNG00000014996) #27	ENSPSNG00000014944 #28	TENT4B (ENSPSNG00000014186) #29	HEATR3 (ENSPSNG00000014045) #30	CNEP1R1 (ENSPSNG00000013955) #31	ZNF423 (ENSPSNG00000013840) #32	C16orf78 (ENSPSNG00000013755) #33	CBLN1 (ENSPSNG00000013689) #34	ENSPSNG00000013659	N4BP1 (ENSPSNG00000013602) #35	SIAH1 (ENSPSNG00000013519) #37
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00950000182967.a.a.a.a.a.a.m.b.b.a	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00390000012524.a.b	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Beluga whale	MODERN SPECIES	3	ENSDLEG00000007594	ENSDLEG00000007413	SLC6A2 (ENSDLEG00000007299) #8	LPCAT2 (ENSDLEG00000007275) #9	MMP2 (ENSDLEG00000007268) #10	IRX6 (ENSDLEG00000007256) #11	IRX5 (ENSDLEG00000007253) #12	IRX3 (ENSDLEG00000007250) #14	FTO (ENSDLEG00000007239) #15	RPGRIP1L (ENSDLEG00000006851) #16	AKTIP (ENSDLEG00000006795) #17	RBL2 (ENSDLEG00000006650) #18	CHD9 (ENSDLEG00000004714) #19	CHD9NB (ENSDLEG00000004490)	TOX3 (ENSDLEG00000004483) #21	SALL1 (ENSDLEG00000004477) #22	CYLD (ENSDLEG00000004470) #23	NOD2 (ENSDLEG00000004464) #24	SNX20 (ENSDLEG00000004455) #25	NKD1 (ENSDLEG00000004447) #26	BRD7 (ENSDLEG00000004432) #27	ADCY7 (ENSDLEG00000004403) #28	TENT4B (ENSDLEG00000004389) #29	HEATR3 (ENSDLEG00000004380) #30	CNEP1R1 (ENSDLEG00000004375) #31	ZNF423 (ENSDLEG00000004357) #32	C16orf78 (ENSDLEG00000004349) #33	CBLN1 (ENSDLEG00000004341) #34	ENSDLEG00000004338	N4BP1 (ENSDLEG00000004331) #35	SIAH1 (ENSDLEG00000004325) #37
Narwhal	MODERN SPECIES	296	ENSMMNG00015008888	SLC6A2 (ENSMMNG00015009267) #8	LPCAT2 (ENSMMNG00015009321) #9	MMP2 (ENSMMNG00015009342) #10	IRX6 (ENSMMNG00015009363) #11	IRX5 (ENSMMNG00015009375) #12	IRX3 (ENSMMNG00015009381) #14	FTO (ENSMMNG00015009401) #15	RPGRIP1L (ENSMMNG00015009433) #16	AKTIP (ENSMMNG00015009460) #17	RBL2 (ENSMMNG00015009484) #18	CHD9 (ENSMMNG00015009549) #19	ENSMMNG00015009586	CHD9NB (ENSMMNG00015009592)	TOX3 (ENSMMNG00015009598) #21	SALL1 (ENSMMNG00015009605) #22	CYLD (ENSMMNG00015009618) #23	NOD2 (ENSMMNG00015009637) #24	SNX20 (ENSMMNG00015009652) #25	NKD1 (ENSMMNG00015009664) #26	BRD7 (ENSMMNG00015009678) #27	ADCY7 (ENSMMNG00015009697) #28	TENT4B (ENSMMNG00015009736) #29	HEATR3 (ENSMMNG00015009780) #30	CNEP1R1 (ENSMMNG00015009819) #31	ZNF423 (ENSMMNG00015009834) #32	C16orf78 (ENSMMNG00015009847) #33	CBLN1 (ENSMMNG00015009855) #34	ENSMMNG00015009863	N4BP1 (ENSMMNG00015009871) #35	SIAH1 (ENSMMNG00015000049) #37
Pecora	ANCESTRAL SPECIES	4	ENSGT00950000182967.a.a.a.a.a.a.n.c	ENSGT00940000158564.e	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000158564.e	ENSGT00940000154623.k.a.b #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000158564.e	ENSGT00940000154623.k.a.b #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00910000148543	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00910000148543	ENSGT01040000240503.B.cb.b	ENSGT00940000158043 #21	ENSGT00960000189733	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Bos	ANCESTRAL SPECIES	4	ENSGT00940000154623.k.a.b #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00910000148543	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00960000187150	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37
Bos_b	ANCESTRAL SPECIES		ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00910000148543	ENSGT00940000158043 #21	ENSGT00390000018141.i.a.b.b.b.a.b.b.a.b.b	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Cow	MODERN SPECIES	9	CES1 (ENSBTAG00000011021) #7	SLC6A2 (ENSBTAG00000003353) #8	LPCAT2 (ENSBTAG00000019272) #9	MMP2 (ENSBTAG00000019267) #10	IRX6 (ENSBTAG00000016407) #11	IRX5 (ENSBTAG00000004838) #12	IRX3 (ENSBTAG00000012083) #14	FTO (ENSBTAG00000012501) #15	RPGRIP1L (ENSBTAG00000012499) #16	AKTIP (ENSBTAG00000016250) #17	RBL2 (ENSBTAG00000016243) #18	CHD9 (ENSBTAG00000002287) #19	ENSBTAG00000049705	TOX3 (ENSBTAG00000000418) #21	ENSBTAG00000051871	SALL1 (ENSBTAG00000008544) #22	CYLD (ENSBTAG00000006291) #23	NOD2 (ENSBTAG00000020936) #24	SNX20 (ENSBTAG00000003961) #25	NKD1 (ENSBTAG00000012295) #26	BRD7 (ENSBTAG00000021575) #27	ADCY7 (ENSBTAG00000006208) #28	TENT4B (ENSBTAG00000007942) #29	HEATR3 (ENSBTAG00000016640) #30	CNEP1R1 (ENSBTAG00000033078) #31	ENSBTAG00000052469	ENSBTAG00000051062	ZNF423 (ENSBTAG00000017397) #32	C18H16orf78 (ENSBTAG00000008720) #33	CBLN1 (ENSBTAG00000015194) #34	N4BP1 (ENSBTAG00000019938) #35
Hybrid Bos Indicus	MODERN SPECIES	9	LPCAT2 (ENSBIXG00005015276) #9	MMP2 (ENSBIXG00005005977) #10	IRX6 (ENSBIXG00005002212) #11	ENSBIXG00005015047	IRX5 (ENSBIXG00005015036) #12	IRX3 (ENSBIXG00005002200) #14	FTO (ENSBIXG00005002186) #15	RPGRIP1L (ENSBIXG00005014864) #16	AKTIP (ENSBIXG00005014732) #17	RBL2 (ENSBIXG00005014700) #18	CHD9 (ENSBIXG00005014635) #19	CHD9NB (ENSBIXG00005014531)	ENSBIXG00005014525	TOX3 (ENSBIXG00005014497) #21	ENSBIXG00005014430	SALL1 (ENSBIXG00005006737) #22	CYLD (ENSBIXG00005014346) #23	NOD2 (ENSBIXG00005014215) #24	SNX20 (ENSBIXG00005005704) #25	NKD1 (ENSBIXG00005005932) #26	BRD7 (ENSBIXG00005014141) #27	ADCY7 (ENSBIXG00005014084) #28	TENT4B (ENSBIXG00005007491) #29	HEATR3 (ENSBIXG00005013925) #30	ENSBIXG00005005400	CNEP1R1 (ENSBIXG00005001738) #31	ZNF423 (ENSBIXG00005005395) #32	C16orf78 (ENSBIXG00005013700) #33	CBLN1 (ENSBIXG00005001667) #34	N4BP1 (ENSBIXG00005013624) #35	ENSBIXG00005013587 #37
Bos_a	ANCESTRAL SPECIES	22	ENSGT00940000154623.k.a.b #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00910000148543	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00390000003561.m.c.a	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00960000187150	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Domestic yak	MODERN SPECIES	12	LPCAT2 (ENSBGRG00000023829) #9	MMP2 (ENSBGRG00000023889) #10	IRX6 (ENSBGRG00000024080) #11	IRX5 (ENSBGRG00000024137) #12	IRX3 (ENSBGRG00000024169) #14	FTO (ENSBGRG00000024270) #15	ENSBGRG00000024677	RPGRIP1L (ENSBGRG00000024721) #16	AKTIP (ENSBGRG00000024918) #17	RBL2 (ENSBGRG00000024969) #18	CHD9 (ENSBGRG00000025060) #19	ENSBGRG00000025379	ENSBGRG00000025389	ENSBGRG00000025395	ENSBGRG00000025407 #21	SALL1 (ENSBGRG00000025421) #22	CYLD (ENSBGRG00000005642) #23	NOD2 (ENSBGRG00000006201) #24	SNX20 (ENSBGRG00000006807) #25	NKD1 (ENSBGRG00000007093) #26	ENSBGRG00000007550	BRD7 (ENSBGRG00000007865) #27	ADCY7 (ENSBGRG00000008786) #28	TENT4B (ENSBGRG00000009967) #29	ENSBGRG00000010894	ENSBGRG00000010983	HEATR3 (ENSBGRG00000011232) #30	ENSBGRG00000011559	CNEP1R1 (ENSBGRG00000011705) #31	ZNF423 (ENSBGRG00000012116) #32	C16orf78 (ENSBGRG00000012467) #33
Wild yak	MODERN SPECIES	1175															ENSBMUG00000010065	SALL1 (ENSBMUG00000010082) #22
American bison	MODERN SPECIES	2214													ENSBBBG00000017485	TOX3 (ENSBBBG00000004332) #21	ENSBBBG00000004334	SALL1 (ENSBBBG00000017538) #22	CYLD (ENSBBBG00000017785) #23	NOD2 (ENSBBBG00000017827) #24	SNX20 (ENSBBBG00000017855) #25	NKD1 (ENSBBBG00000017887) #26	BRD7 (ENSBBBG00000017931) #27	ADCY7 (ENSBBBG00000018007) #28	TENT4B (ENSBBBG00000018039) #29	HEATR3 (ENSBBBG00000018055) #30	CNEP1R1 (ENSBBBG00000018100) #31
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000154623.k.a.a #7	ENSGT00940000158564.e	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00910000148543	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.a.a #37	ENSGT00530000063553.b.b
Goat	MODERN SPECIES	9	CDK10 (ENSCHIG00000009612)	SPATA2L (ENSCHIG00000017204)	VPS9D1 (ENSCHIG00000025705)	ZNF276 (ENSCHIG00000017992)	FANCA (ENSCHIG00000003612)	SPIRE2 (ENSCHIG00000019449)	TCF25 (ENSCHIG00000020771)	MC1R (ENSCHIG00000010476)	TUBB3 (ENSCHIG00000026725)	DEF8 (ENSCHIG00000025811)	ENSCHIG00000011696	DBNDD1 (ENSCHIG00000015185)	GAS8 (ENSCHIG00000021451)	ENSCHIG00000009006	TOX3 (ENSCHIG00000009545) #21	SALL1 (ENSCHIG00000026074) #22	ENSCHIG00000011085	CYLD (ENSCHIG00000026390) #23	NOD2 (ENSCHIG00000024746) #24	SNX20 (ENSCHIG00000026020) #25	NKD1 (ENSCHIG00000022144) #26	BRD7 (ENSCHIG00000023787) #27	ADCY7 (ENSCHIG00000025184) #28	TENT4B (ENSCHIG00000021933) #29	HEATR3 (ENSCHIG00000016750) #30	CNEP1R1 (ENSCHIG00000021937) #31	ZNF423 (ENSCHIG00000027139) #32	C16orf78 (ENSCHIG00000026888) #33	CBLN1 (ENSCHIG00000016657) #34	ENSCHIG00000020063	N4BP1 (ENSCHIG00000019641) #35
Rambouillet Sheep	MODERN SPECIES	5	SLC6A2 (ENSOARG00020009128) #8	LPCAT2 (ENSOARG00020008951) #9	MMP2 (ENSOARG00020008789) #10	IRX6 (ENSOARG00020008760) #11	IRX5 (ENSOARG00020008717) #12	IRX3 (ENSOARG00020008675) #14	ENSOARG00020008643	FTO (ENSOARG00020008419) #15	RPGRIP1L (ENSOARG00020008133) #16	AKTIP (ENSOARG00020008060) #17	RBL2 (ENSOARG00020007785) #18	CHD9 (ENSOARG00020007553) #19	CHD9NB (ENSOARG00020007518)	ENSOARG00020007504	TOX3 (ENSOARG00020007461) #21	SALL1 (ENSOARG00020007355) #22	ENSOARG00020007302	CYLD (ENSOARG00020007008) #23	NOD2 (ENSOARG00020006729) #24	SNX20 (ENSOARG00020006621) #25	NKD1 (ENSOARG00020006504) #26	ENSOARG00020006477	BRD7 (ENSOARG00020006275) #27	ADCY7 (ENSOARG00020006198) #28	TENT4B (ENSOARG00020006032) #29	HEATR3 (ENSOARG00020005991) #30	CNEP1R1 (ENSOARG00020005909) #31	ENSOARG00020005883	ZNF423 (ENSOARG00020005823) #32	C16orf78 (ENSOARG00020005789) #33	CBLN1 (ENSOARG00020005764) #34
Siberian musk deer	MODERN SPECIES	1192	ENSMMSG00000012191 #7	ENSMMSG00000012156 #7	SLC6A2 (ENSMMSG00000011050) #8	LPCAT2 (ENSMMSG00000010940) #9	MMP2 (ENSMMSG00000010869) #10	IRX6 (ENSMMSG00000010817) #11	IRX5 (ENSMMSG00000010766) #12	IRX3 (ENSMMSG00000010728) #14	FTO (ENSMMSG00000010603) #15	RPGRIP1L (ENSMMSG00000010119) #16	AKTIP (ENSMMSG00000010049) #17	RBL2 (ENSMMSG00000009982) #18	CHD9 (ENSMMSG00000009559) #19	ENSMMSG00000009494	TOX3 (ENSMMSG00000009435) #21	SALL1 (ENSMMSG00000009393) #22	CYLD (ENSMMSG00000009139) #23	NOD2 (ENSMMSG00000009067) #24	SNX20 (ENSMMSG00000008973) #25	NKD1 (ENSMMSG00000008933) #26	BRD7 (ENSMMSG00000008887) #27	ADCY7 (ENSMMSG00000008792) #28	TENT4B (ENSMMSG00000008637) #29	HEATR3 (ENSMMSG00000008588) #30	CNEP1R1 (ENSMMSG00000008491) #31	ZNF423 (ENSMMSG00000008456) #32	ENSMMSG00000008432 #33	CBLN1 (ENSMMSG00000008404) #34
Yarkand deer	MODERN SPECIES	27	ENSCHYG00000007377	ENSCHYG00000006954	SLC6A2 (ENSCHYG00000006837) #8	LPCAT2 (ENSCHYG00000006753) #9	MMP2 (ENSCHYG00000006606) #10	IRX6 (ENSCHYG00000006545) #11	IRX5 (ENSCHYG00000006511) #12	IRX3 (ENSCHYG00000006454) #14	FTO (ENSCHYG00000006304) #15	RPGRIP1L (ENSCHYG00000006115) #16	AKTIP (ENSCHYG00000006066) #17	RBL2 (ENSCHYG00000005980) #18	ENSCHYG00000005967	CHD9 (ENSCHYG00000005567) #19	ENSCHYG00000005452	SALL1 (ENSCHYG00000005364) #22	CYLD (ENSCHYG00000005179) #23	NOD2 (ENSCHYG00000005036) #24	SNX20 (ENSCHYG00000004988) #25	NKD1 (ENSCHYG00000004944) #26	BRD7 (ENSCHYG00000004908) #27	ADCY7 (ENSCHYG00000004827) #28	TENT4B (ENSCHYG00000004780) #29	HEATR3 (ENSCHYG00000004729) #30	CNEP1R1 (ENSCHYG00000004697) #31	ZNF423 (ENSCHYG00000004665) #32	C16orf78 (ENSCHYG00000004643) #33	CBLN1 (ENSCHYG00000004635) #34	N4BP1 (ENSCHYG00000004618) #35	ENSCHYG00000004605 #37	LONP2 (ENSCHYG00000004582)
Camelidae	ANCESTRAL SPECIES	9	ENSGT00940000161596	ENSGT00940000154623.l #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Arabian camel	MODERN SPECIES	35	ENSCDRG00005001870 #7	SLC6A2 (ENSCDRG00005001765) #8	LPCAT2 (ENSCDRG00005001714) #9	MMP2 (ENSCDRG00005001638) #10	IRX6 (ENSCDRG00005001597) #11	IRX5 (ENSCDRG00005001574) #12	IRX3 (ENSCDRG00005001552) #14	FTO (ENSCDRG00005001486) #15	RPGRIP1L (ENSCDRG00005001382) #16	AKTIP (ENSCDRG00005001331) #17	RBL2 (ENSCDRG00005001292) #18	CHD9 (ENSCDRG00005001229) #19	CHD9NB (ENSCDRG00005001186)	ENSCDRG00005001171	TOX3 (ENSCDRG00005001153) #21	SALL1 (ENSCDRG00005001107) #22	CYLD (ENSCDRG00005001037) #23	NOD2 (ENSCDRG00005000930) #24	SNX20 (ENSCDRG00005000889) #25	NKD1 (ENSCDRG00005000863) #26	BRD7 (ENSCDRG00005000831) #27	ADCY7 (ENSCDRG00005000750) #28	TENT4B (ENSCDRG00005000655) #29	HEATR3 (ENSCDRG00005000603) #30	CNEP1R1 (ENSCDRG00005000581) #31	ZNF423 (ENSCDRG00005000552) #32	C16orf78 (ENSCDRG00005000529) #33	CBLN1 (ENSCDRG00005000510) #34	N4BP1 (ENSCDRG00005000490) #35	SIAH1 (ENSCDRG00005000466) #37	LONP2 (ENSCDRG00005000407)
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Carnivora	DUPLICATION
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
Mustelinae	ANCESTRAL SPECIES	6	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37
American mink	MODERN SPECIES	2	CES5A (ENSNVIG00000016697)	ENSNVIG00000016822	SLC6A2 (ENSNVIG00000016880) #8	LPCAT2 (ENSNVIG00000017057) #9	MMP2 (ENSNVIG00000017094) #10	IRX6 (ENSNVIG00000017145) #11	IRX5 (ENSNVIG00000017154) #12	IRX3 (ENSNVIG00000017164) #14	FTO (ENSNVIG00000017171) #15	FTM (ENSNVIG00000017234) #16	AKTIP (ENSNVIG00000017560) #17	RBL2 (ENSNVIG00000017591) #18	CHD9 (ENSNVIG00000017677) #19	CHD9NB (ENSNVIG00000018148)	TOX3 (ENSNVIG00000018161) #21	SALL1 (ENSNVIG00000018193) #22	CYLD (ENSNVIG00000018201) #23	NOD2 (ENSNVIG00000018277) #24	SNX20 (ENSNVIG00000018295) #25	NKD1 (ENSNVIG00000018300) #26	BRD7 (ENSNVIG00000018322) #27	ADCY7 (ENSNVIG00000018370) #28	TENT4B (ENSNVIG00000018447) #29	HEATR3 (ENSNVIG00000018476) #30	CNEP1R1 (ENSNVIG00000018482) #31	ZNF423 (ENSNVIG00000018526) #32	ENSNVIG00000018548 #33	CBLN1 (ENSNVIG00000018559) #34	N4BP1 (ENSNVIG00000018575) #35	SIAH1 (ENSNVIG00000018590) #37	LONP2 (ENSNVIG00000018597)
Ferret	MODERN SPECIES	174	ENSMPUG00000003424	SLC6A2 (ENSMPUG00000003413) #8	LPCAT2 (ENSMPUG00000003397) #9	MMP2 (ENSMPUG00000003387) #10	IRX6 (ENSMPUG00000003378) #11	IRX5 (ENSMPUG00000003373) #12	ENSMPUG00000003369	IRX3 (ENSMPUG00000003361) #14	FTO (ENSMPUG00000003354) #15	RPGRIP1L (ENSMPUG00000003338) #16	AKTIP (ENSMPUG00000003331) #17	RBL2 (ENSMPUG00000003315) #18	CHD9 (ENSMPUG00000003285) #19	ENSMPUG00000003279	TOX3 (ENSMPUG00000003272) #21	SALL1 (ENSMPUG00000003265) #22	ENSMPUG00000003260	CYLD (ENSMPUG00000003199) #23	NOD2 (ENSMPUG00000003188) #24	SNX20 (ENSMPUG00000003184) #25	NKD1 (ENSMPUG00000003177) #26	BRD7 (ENSMPUG00000003164) #27	ADCY7 (ENSMPUG00000003154) #28	TENT4B (ENSMPUG00000003121) #29	HEATR3 (ENSMPUG00000003112) #30	CNEP1R1 (ENSMPUG00000003109) #31	ENSMPUG00000003081	ZNF423 (ENSMPUG00000003075) #32	C16orf78 (ENSMPUG00000003067) #33	CBLN1 (ENSMPUG00000003041) #34	N4BP1 (ENSMPUG00000003034) #35
Ursidae	ANCESTRAL SPECIES	8	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.e #37
Giant Panda	MODERN SPECIES	3	SLC6A2 (ENSAMEG00000016488) #8	LPCAT2 (ENSAMEG00000016449) #9	MMP2 (ENSAMEG00000016417) #10	IRX6 (ENSAMEG00000016415) #11	IRX5 (ENSAMEG00000029574) #12	IRX3 (ENSAMEG00000016409) #14	ENSAMEG00000027895 #15	ENSAMEG00000026555	AKTIP (ENSAMEG00000016345) #17	ENSAMEG00000002818	RBL2 (ENSAMEG00000016277) #18	CHD9 (ENSAMEG00000016232) #19	ENSAMEG00000024543	TOX3 (ENSAMEG00000006831) #21	ENSAMEG00000028098	SALL1 (ENSAMEG00000025292) #22	CYLD (ENSAMEG00000006757) #23	NOD2 (ENSAMEG00000006741) #24	SNX20 (ENSAMEG00000024024) #25	ENSAMEG00000006721 #26	BRD7 (ENSAMEG00000006689) #27	ADCY7 (ENSAMEG00000006564) #28	TENT4B (ENSAMEG00000006535) #29	HEATR3 (ENSAMEG00000006493) #30	CNEP1R1 (ENSAMEG00000006491) #31	ENSAMEG00000006486	ZNF423 (ENSAMEG00000006481) #32	C16orf78 (ENSAMEG00000006474) #33	CBLN1 (ENSAMEG00000006468) #34	N4BP1 (ENSAMEG00000010288) #35	ENSAMEG00000010284 #37
Ursus	ANCESTRAL SPECIES	26	ENSGT00940000156482	ENSGT00940000155883.a.a	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b.e #18	ENSGT00950000183202.a.b.f #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529.g #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.e #37
American black bear	MODERN SPECIES	36															ENSUAMG00000023379 #22	ENSUAMG00000023381 #22	CYLD (ENSUAMG00000023383) #23
Polar bear	MODERN SPECIES	246	NUDT21 (ENSUMAG00000001344)	AMFR (ENSUMAG00000001363)	ENSUMAG00000001550	CES5A (ENSUMAG00000001619)	ENSUMAG00000001788	SLC6A2 (ENSUMAG00000001816) #8	LPCAT2 (ENSUMAG00000001955) #9	MMP2 (ENSUMAG00000002100) #10	FTO (ENSUMAG00000002581) #15	RPGRIP1L (ENSUMAG00000002645) #16	AKTIP (ENSUMAG00000002841) #17	RBL2 (ENSUMAG00000002993) #18	ENSUMAG00000003789	CHD9 (ENSUMAG00000004043) #19	TOX3 (ENSUMAG00000005349) #21	ENSUMAG00000005357 #22	CYLD (ENSUMAG00000005408) #23	NOD2 (ENSUMAG00000005890) #24	ENSUMAG00000005926 #25	NKD1 (ENSUMAG00000005931) #26	BRD7 (ENSUMAG00000005986) #27	ADCY7 (ENSUMAG00000006160) #28	TENT4B (ENSUMAG00000006309) #29	HEATR3 (ENSUMAG00000006385) #30	CNEP1R1 (ENSUMAG00000006630) #31	ENSUMAG00000006646	ENSUMAG00000006664 #32	ENSUMAG00000006675 #33	CBLN1 (ENSUMAG00000006680) #34	N4BP1 (ENSUMAG00000006688) #35	ENSUMAG00000006693 #37
Canidae	ANCESTRAL SPECIES	14	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00940000168933	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT00940000155883.a.a	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00940000168933	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Dingo	MODERN SPECIES	41	ENSCAFG00020004339	ENSCAFG00020004334	SLC6A2 (ENSCAFG00020004230) #8	LPCAT2 (ENSCAFG00020004051) #9	MMP2 (ENSCAFG00020003742) #10	IRX6 (ENSCAFG00020003712) #11	IRX5 (ENSCAFG00020003703) #12	IRX3 (ENSCAFG00020003699) #14	FTO (ENSCAFG00020003690) #15	RPGRIP1L (ENSCAFG00020003432) #16	AKTIP (ENSCAFG00020003392) #17	RBL2 (ENSCAFG00020003057) #18	ENSCAFG00020003037	CHD9 (ENSCAFG00020002879) #19	TOX3 (ENSCAFG00020002858) #21	SALL1 (ENSCAFG00020002842) #22	ENSCAFG00020002827	CYLD (ENSCAFG00020001785) #23	NOD2 (ENSCAFG00020001497) #24	SNX20 (ENSCAFG00020001482) #25	NKD1 (ENSCAFG00020001437) #26	BRD7 (ENSCAFG00020001425) #27	ADCY7 (ENSCAFG00020001134) #28	TENT4B (ENSCAFG00020000987) #29	ENSCAFG00020000975	HEATR3 (ENSCAFG00020000624) #30	CNEP1R1 (ENSCAFG00020000556) #31	ZNF423 (ENSCAFG00020000541) #32	C16orf78 (ENSCAFG00020000518) #33	CBLN1 (ENSCAFG00020000480) #34	N4BP1 (ENSCAFG00020000467) #35
Dog	MODERN SPECIES	11	GNAO1 (ENSCAFG00845000319)	ENSCAFG00845000373	CES1 (ENSCAFG00845000453)	SLC6A2 (ENSCAFG00845000709) #8	LPCAT2 (ENSCAFG00845000815) #9	MMP2 (ENSCAFG00845000865) #10	IRX6 (ENSCAFG00845000989) #11	IRX5 (ENSCAFG00845001045) #12	IRX3 (ENSCAFG00845001072) #14	FTO (ENSCAFG00845002069) #15	RPGRIP1L (ENSCAFG00845003370) #16	AKTIP (ENSCAFG00845003411) #17	RBL2 (ENSCAFG00845003441) #18	CHD9 (ENSCAFG00845003529) #19	TOX3 (ENSCAFG00845003688) #21	SALL1 (ENSCAFG00845003739) #22	ENSCAFG00845003751	CYLD (ENSCAFG00845003806) #23	NOD2 (ENSCAFG00845003875) #24	SNX20 (ENSCAFG00845003924) #25	NKD1 (ENSCAFG00845003953) #26	BRD7 (ENSCAFG00845003994) #27	ADCY7 (ENSCAFG00845004089) #28	TENT4B (ENSCAFG00845004208) #29	HEATR3 (ENSCAFG00845004241) #30	ENSCAFG00845004273	CNEP1R1 (ENSCAFG00845004308) #31	ENSCAFG00845004320	ENSCAFG00845004326	ZNF423 (ENSCAFG00845004378) #32	C2H16orf78 (ENSCAFG00845004423) #33
Red fox	MODERN SPECIES	87	CES1 (ENSVVUG00000021742)	SLC6A2 (ENSVVUG00000020241) #8	LPCAT2 (ENSVVUG00000020204) #9	MMP2 (ENSVVUG00000019637) #10	ENSVVUG00000019604	IRX6 (ENSVVUG00000019600) #11	IRX5 (ENSVVUG00000019591) #12	IRX3 (ENSVVUG00000019559) #14	FTO (ENSVVUG00000019536) #15	RPGRIP1L (ENSVVUG00000019516) #16	AKTIP (ENSVVUG00000019466) #17	RBL2 (ENSVVUG00000019450) #18	CHD9 (ENSVVUG00000019435) #19	TOX3 (ENSVVUG00000019398) #21	ENSVVUG00000019383 #22	ENSVVUG00000019379 #22	ENSVVUG00000019369	ENSVVUG00000019367	CYLD (ENSVVUG00000019356) #23	NOD2 (ENSVVUG00000019346) #24	SNX20 (ENSVVUG00000019339) #25	NKD1 (ENSVVUG00000019337) #26	BRD7 (ENSVVUG00000019113) #27	ADCY7 (ENSVVUG00000018266) #28	TENT4B (ENSVVUG00000018169) #29	HEATR3 (ENSVVUG00000018143) #30	CNEP1R1 (ENSVVUG00000018121) #31	ENSVVUG00000018112	ZNF423 (ENSVVUG00000018080) #32	ENSVVUG00000018065 #33	CBLN1 (ENSVVUG00000018057) #34
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00390000008767.b.c	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Panthera	ANCESTRAL SPECIES	10	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00390000008767.b.c	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.c #37	ENSGT00530000063553.b.b
Panthera_a	ANCESTRAL SPECIES	8	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00390000008767.b.c	ENSGT00940000158043 #21	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.c #37	ENSGT00530000063553.b.b
lion	MODERN SPECIES	15	CES1 (ENSPLOG00000007640) #7	SLC6A2 (ENSPLOG00000007333) #8	LPCAT2 (ENSPLOG00000007233) #9	MMP2 (ENSPLOG00000007104) #10	IRX6 (ENSPLOG00000007043) #11	IRX5 (ENSPLOG00000007027) #12	IRX3 (ENSPLOG00000007008) #14	FTO (ENSPLOG00000006852) #15	RPGRIP1L (ENSPLOG00000006625) #16	AKTIP (ENSPLOG00000006580) #17	RBL2 (ENSPLOG00000006496) #18	CHD9 (ENSPLOG00000006326) #19	CHD9NB (ENSPLOG00000006265)	ENSPLOG00000006237	TOX3 (ENSPLOG00000006207) #21	SALL1 (ENSPLOG00000006158) #22	CYLD (ENSPLOG00000005966) #23	NOD2 (ENSPLOG00000005838) #24	SNX20 (ENSPLOG00000005801) #25	NKD1 (ENSPLOG00000005679) #26	BRD7 (ENSPLOG00000005652) #27	ADCY7 (ENSPLOG00000005432) #28	TENT4B (ENSPLOG00000015102) #29	HEATR3 (ENSPLOG00000015035) #30	CNEP1R1 (ENSPLOG00000014960) #31	ZNF423 (ENSPLOG00000014807) #32	C16orf78 (ENSPLOG00000014751) #33	CBLN1 (ENSPLOG00000014707) #34	N4BP1 (ENSPLOG00000014675) #35	ENSPLOG00000014631 #37	LONP2 (ENSPLOG00000014544)
leopard	MODERN SPECIES	28	CES5A (ENSPPRG00000024161)	ENSPPRG00000021104	SLC6A2 (ENSPPRG00000016674) #8	LPCAT2 (ENSPPRG00000012494) #9	MMP2 (ENSPPRG00000012232) #10	IRX6 (ENSPPRG00000010817) #11	IRX5 (ENSPPRG00000010774) #12	IRX3 (ENSPPRG00000010599) #14	FTO (ENSPPRG00000008968) #15	RPGRIP1L (ENSPPRG00000007411) #16	AKTIP (ENSPPRG00000005954) #17	RBL2 (ENSPPRG00000005467) #18	CHD9 (ENSPPRG00000004801) #19	TOX3 (ENSPPRG00000022987) #21	ENSPPRG00000023231	SALL1 (ENSPPRG00000023283) #22	CYLD (ENSPPRG00000023533) #23	NOD2 (ENSPPRG00000024296) #24	SNX20 (ENSPPRG00000024487) #25	NKD1 (ENSPPRG00000024626) #26	BRD7 (ENSPPRG00000024677) #27	ADCY7 (ENSPPRG00000024790) #28	TENT4B (ENSPPRG00000024986) #29	HEATR3 (ENSPPRG00000025034) #30	CNEP1R1 (ENSPPRG00000021139) #31	ZNF423 (ENSPPRG00000019601) #32	C16orf78 (ENSPPRG00000016709) #33	CBLN1 (ENSPPRG00000016053) #34	N4BP1 (ENSPPRG00000014683) #35	ENSPPRG00000014448 #37	LONP2 (ENSPPRG00000013784)
Tiger	MODERN SPECIES	547								FTO (ENSPTIG00000014386) #15	RPGRIP1L (ENSPTIG00000018275) #16	AKTIP (ENSPTIG00000019681) #17	RBL2 (ENSPTIG00000020870) #18	CHD9 (ENSPTIG00000021854) #19	CHD9NB (ENSPTIG00000002739)	TOX3 (ENSPTIG00000012938) #21	ENSPTIG00000013539 #22	ENSPTIG00000002799 #22	CYLD (ENSPTIG00000014633) #23	NOD2 (ENSPTIG00000007371) #24	SNX20 (ENSPTIG00000009177) #25	NKD1 (ENSPTIG00000010677) #26	BRD7 (ENSPTIG00000011411) #27	ADCY7 (ENSPTIG00000014532) #28	ENSPTIG00000020374 #29	HEATR3 (ENSPTIG00000020656) #30	CNEP1R1 (ENSPTIG00000005471) #31	ZNF423 (ENSPTIG00000008348) #32	C16orf78 (ENSPTIG00000012056) #33	CBLN1 (ENSPTIG00000012479) #34	N4BP1 (ENSPTIG00000013078) #35	SIAH1 (ENSPTIG00000013734) #37	LONP2 (ENSPTIG00000013959)
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34
Canidae	ANCESTRAL SPECIES	14	ENSGT00940000155883.a.a	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00940000168933	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00960000190798	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33
Red fox	MODERN SPECIES	87	CES5A (ENSVVUG00000021745)	CES1 (ENSVVUG00000021742)	SLC6A2 (ENSVVUG00000020241) #8	LPCAT2 (ENSVVUG00000020204) #9	MMP2 (ENSVVUG00000019637) #10	ENSVVUG00000019604	IRX6 (ENSVVUG00000019600) #11	IRX5 (ENSVVUG00000019591) #12	IRX3 (ENSVVUG00000019559) #14	FTO (ENSVVUG00000019536) #15	RPGRIP1L (ENSVVUG00000019516) #16	AKTIP (ENSVVUG00000019466) #17	RBL2 (ENSVVUG00000019450) #18	CHD9 (ENSVVUG00000019435) #19	TOX3 (ENSVVUG00000019398) #21	ENSVVUG00000019383 #22	ENSVVUG00000019379 #22	ENSVVUG00000019369	ENSVVUG00000019367	CYLD (ENSVVUG00000019356) #23	NOD2 (ENSVVUG00000019346) #24	SNX20 (ENSVVUG00000019339) #25	NKD1 (ENSVVUG00000019337) #26	BRD7 (ENSVVUG00000019113) #27	ADCY7 (ENSVVUG00000018266) #28	TENT4B (ENSVVUG00000018169) #29	HEATR3 (ENSVVUG00000018143) #30	CNEP1R1 (ENSVVUG00000018121) #31	ENSVVUG00000018112	ZNF423 (ENSVVUG00000018080) #32	ENSVVUG00000018065 #33
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000155938.j #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000155938.j #22
Ursus	ANCESTRAL SPECIES																	ENSGT00940000155938.j #22
American black bear	MODERN SPECIES	36																ENSUAMG00000023379 #22	ENSUAMG00000023381 #22	CYLD (ENSUAMG00000023383) #23
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00390000008767.b.c	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00960000190798	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34
Panthera	ANCESTRAL SPECIES	10	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00390000008767.b.c	ENSGT00940000158043 #21	ENSGT00940000155938.j #22	ENSGT00940000155938.i #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f.c #37
Tiger	MODERN SPECIES	547									FTO (ENSPTIG00000014386) #15	RPGRIP1L (ENSPTIG00000018275) #16	AKTIP (ENSPTIG00000019681) #17	RBL2 (ENSPTIG00000020870) #18	CHD9 (ENSPTIG00000021854) #19	CHD9NB (ENSPTIG00000002739)	TOX3 (ENSPTIG00000012938) #21	ENSPTIG00000013539 #22	ENSPTIG00000002799 #22	CYLD (ENSPTIG00000014633) #23	NOD2 (ENSPTIG00000007371) #24	SNX20 (ENSPTIG00000009177) #25	NKD1 (ENSPTIG00000010677) #26	BRD7 (ENSPTIG00000011411) #27	ADCY7 (ENSPTIG00000014532) #28	ENSPTIG00000020374 #29	HEATR3 (ENSPTIG00000020656) #30	CNEP1R1 (ENSPTIG00000005471) #31	ZNF423 (ENSPTIG00000008348) #32	C16orf78 (ENSPTIG00000012056) #33	CBLN1 (ENSPTIG00000012479) #34	N4BP1 (ENSPTIG00000013078) #35	SIAH1 (ENSPTIG00000013734) #37
Cat	MODERN SPECIES	246	CES5A (ENSFCAG00000014321)	SLC6A2 (ENSFCAG00000014317) #8	LPCAT2 (ENSFCAG00000027346) #9	MMP2 (ENSFCAG00000005935) #10	IRX6 (ENSFCAG00000013031) #11	IRX5 (ENSFCAG00000041752) #12	IRX3 (ENSFCAG00000039768) #14	FTO (ENSFCAG00000005267) #15	RPGRIP1L (ENSFCAG00000005266) #16	AKTIP (ENSFCAG00000009131) #17	RBL2 (ENSFCAG00000018239) #18	CHD9 (ENSFCAG00000022534) #19	CHD9NB (ENSFCAG00000045813)	ENSFCAG00000052306	TOX3 (ENSFCAG00000039012) #21	SALL1 (ENSFCAG00000024654) #22	CYLD (ENSFCAG00000008506) #23	NOD2 (ENSFCAG00000008505) #24	SNX20 (ENSFCAG00000008504) #25	NKD1 (ENSFCAG00000045078) #26	BRD7 (ENSFCAG00000009072) #27	ADCY7 (ENSFCAG00000029424) #28	ENSFCAG00000043056	TENT4B (ENSFCAG00000018796) #29	ENSFCAG00000052869	HEATR3 (ENSFCAG00000007212) #30	CNEP1R1 (ENSFCAG00000023936) #31	ENSFCAG00000053653	ZNF423 (ENSFCAG00000012158) #32	C16orf78 (ENSFCAG00000042254) #33	CBLN1 (ENSFCAG00000028536) #34
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Equus	ANCESTRAL SPECIES	20	ENSGT00940000158564.j.a.b	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B.b #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682.l #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Horse	MODERN SPECIES	22	ENSECAG00000052050	LPCAT2 (ENSECAG00000009649) #9	MMP2 (ENSECAG00000000953) #10	IRX6 (ENSECAG00000023569) #11	IRX5 (ENSECAG00000023545) #12	ENSECAG00000049674	IRX3 (ENSECAG00000023496) #14	FTO (ENSECAG00000022922) #15	RPGRIP1L (ENSECAG00000022298) #16	AKTIP (ENSECAG00000020381) #17	RBL2 (ENSECAG00000014181) #18	ENSECAG00000050299	CHD9 (ENSECAG00000011505) #19	ENSECAG00000029200 #21	TOX3 (ENSECAG00000011429) #21	SALL1 (ENSECAG00000011334) #22	CYLD (ENSECAG00000007240) #23	NOD2 (ENSECAG00000017005) #24	SNX20 (ENSECAG00000016834) #25	NKD1 (ENSECAG00000015958) #26	ENSECAG00000053051	BRD7 (ENSECAG00000013213) #27	ADCY7 (ENSECAG00000007149) #28	TENT4B (ENSECAG00000040529) #29	HEATR3 (ENSECAG00000000361) #30	ZNF423 (ENSECAG00000000244) #32	C3H16orf78 (ENSECAG00000000159) #33	CBLN1 (ENSECAG00000000034) #34	N4BP1 (ENSECAG00000024238) #35	SIAH1 (ENSECAG00000044655) #37	LONP2 (ENSECAG00000022436)
Donkey	MODERN SPECIES	20	SLC6A2 (ENSEASG00005018433) #8	CAPNS2 (ENSEASG00005023940)	LPCAT2 (ENSEASG00005018306) #9	MMP2 (ENSEASG00005018304) #10	IRX6 (ENSEASG00005018300) #11	IRX5 (ENSEASG00005030004) #12	IRX3 (ENSEASG00005018291) #14	FTO (ENSEASG00005018288) #15	ENSEASG00005018130 #16	ENSEASG00005038205 #16	AKTIP (ENSEASG00005018060) #17	RBL2 (ENSEASG00005018036) #18	CHD9 (ENSEASG00005014832) #19	CHD9NB (ENSEASG00005026958)	TOX3 (ENSEASG00005014606) #21	SALL1 (ENSEASG00005014602) #22	CYLD (ENSEASG00005014600) #23	NOD2 (ENSEASG00005014576) #24	SNX20 (ENSEASG00005025406) #25	NKD1 (ENSEASG00005014569) #26	BRD7 (ENSEASG00005014566) #27	ADCY7 (ENSEASG00005014561) #28	TENT4B (ENSEASG00005014551) #29	HEATR3 (ENSEASG00005014548) #30	CNEP1R1 (ENSEASG00005014546) #31	ZNF423 (ENSEASG00005014542) #32	C16orf78 (ENSEASG00005014539) #33	CBLN1 (ENSEASG00005029359) #34	N4BP1 (ENSEASG00005014535) #35	ENSEASG00005032316 #37	LONP2 (ENSEASG00005014532)
Chiroptera	ANCESTRAL SPECIES	21	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a.d #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Megabat	MODERN SPECIES	8097																SALL1 (ENSPVAG00000015374) #22
Microchiroptera	ANCESTRAL SPECIES	12	ENSGT00940000161596	ENSGT00940000158564	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00980000198839	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a.d #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Microbat	MODERN SPECIES	2079																SALL1 (ENSMLUG00000015541) #22
Greater horseshoe bat	MODERN SPECIES	6	ENSRFEG00010018147	SLC6A2 (ENSRFEG00010018029) #8	LPCAT2 (ENSRFEG00010017976) #9	MMP2 (ENSRFEG00010017777) #10	IRX6 (ENSRFEG00010017729) #11	IRX5 (ENSRFEG00010017679) #12	IRX3 (ENSRFEG00010017627) #14	ENSRFEG00010017608	FTO (ENSRFEG00010017396) #15	RPGRIP1L (ENSRFEG00010017253) #16	AKTIP (ENSRFEG00010017196) #17	RBL2 (ENSRFEG00010017127) #18	CHD9 (ENSRFEG00010016945) #19	CHD9NB (ENSRFEG00010016917)	TOX3 (ENSRFEG00010016859) #21	SALL1 (ENSRFEG00010016793) #22	CYLD (ENSRFEG00010016753) #23	NOD2 (ENSRFEG00010016709) #24	SNX20 (ENSRFEG00010016632) #25	NKD1 (ENSRFEG00010016587) #26	BRD7 (ENSRFEG00010016521) #27	ADCY7 (ENSRFEG00010016429) #28	TENT4B (ENSRFEG00010016149) #29	HEATR3 (ENSRFEG00010016102) #30	CNEP1R1 (ENSRFEG00010016028) #31	ZNF423 (ENSRFEG00010015923) #32	C16orf78 (ENSRFEG00010015887) #33	CBLN1 (ENSRFEG00010015814) #34	ENSRFEG00010015754	N4BP1 (ENSRFEG00010015699) #35	SIAH1 (ENSRFEG00010015675) #37
Atlantogenata	ANCESTRAL SPECIES	24	ENSGT00940000158564	ENSGT00940000154623 #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b
Xenarthra	ANCESTRAL SPECIES	1716															ENSGT00940000158043 #21	ENSGT00940000155938 #22
Sloth	MODERN SPECIES	11272																ENSCHOG00000000800 #22
Armadillo	MODERN SPECIES	2947													ENSDNOG00000047300	ENSDNOG00000043823	TOX3 (ENSDNOG00000007208) #21	SALL1 (ENSDNOG00000016413) #22
Afrotheria	ANCESTRAL SPECIES	44	ENSGT00940000158564	ENSGT00940000154623 #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b	ENSGT00940000162968
Afrotheria_a	ANCESTRAL SPECIES	43	ENSGT00940000158564	ENSGT00940000154623.n #7	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837.f #37	ENSGT00530000063553.b.b	ENSGT00940000162968
Elephant	MODERN SPECIES	393	ENSLAFG00000027219	ENSLAFG00000030800	SLC6A2 (ENSLAFG00000021409) #8	LPCAT2 (ENSLAFG00000003965) #9	CAPNS2 (ENSLAFG00000028051)	MMP2 (ENSLAFG00000003966) #10	IRX6 (ENSLAFG00000031625) #11	IRX5 (ENSLAFG00000000090) #12	IRX3 (ENSLAFG00000010498) #14	FTO (ENSLAFG00000015645) #15	RPGRIP1L (ENSLAFG00000015632) #16	AKTIP (ENSLAFG00000009027) #17	RBL2 (ENSLAFG00000009024) #18	CHD9 (ENSLAFG00000015374) #19	TOX3 (ENSLAFG00000014949) #21	SALL1 (ENSLAFG00000015251) #22	CYLD (ENSLAFG00000014171) #23	NOD2 (ENSLAFG00000014161) #24	SNX20 (ENSLAFG00000015658) #25	NKD1 (ENSLAFG00000004213) #26	BRD7 (ENSLAFG00000017854) #27	ADCY7 (ENSLAFG00000009995) #28	ENSLAFG00000009990 #29	ENSLAFG00000029580	WTIP (ENSLAFG00000022542)	ENSLAFG00000013784	PDCD2L (ENSLAFG00000013778)	GPI (ENSLAFG00000013770)	GARRE1 (ENSLAFG00000013224)	ENSLAFG00000027355	LSM14A (ENSLAFG00000005233)
Hyrax	MODERN SPECIES	489																SALL1 (ENSPCAG00000008162) #22
Tenrec	MODERN SPECIES	671																SALL1 (ENSETEG00000015150) #22
Marsupialia	ANCESTRAL SPECIES	18	ENSGT00940000154623.o.b #7	ENSGT00940000154623.o.a.a #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000154623.o.a.b #7	ENSGT00940000154623.o.a.a.a #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00390000014556 #33	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00940000154623.o.a.b #7	ENSGT00940000154623.o.a.a.a #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00940000154623.o.a.b #7	ENSGT00940000154623.o.a.a.a #7	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000153430.a.a.e	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Common wonbat	MODERN SPECIES	1030	ENSVURG00010019780 #7	SLC6A2 (ENSVURG00010019792) #8	LPCAT2 (ENSVURG00010019819) #9	MMP2 (ENSVURG00010019856) #10	IRX6 (ENSVURG00010019873) #11	IRX5 (ENSVURG00010019880) #12	IRX3 (ENSVURG00010019907) #14	FTO (ENSVURG00010019930) #15	RPGRIP1L (ENSVURG00010019968) #16	ENSVURG00010020006	AKTIP (ENSVURG00010020011) #17	RBL2 (ENSVURG00010020023) #18	CHD9 (ENSVURG00010020044) #19	TOX3 (ENSVURG00010020069) #21	ENSVURG00010020073	SALL1 (ENSVURG00010020083) #22	CYLD (ENSVURG00010020092) #23	NOD2 (ENSVURG00010020098) #24	SNX20 (ENSVURG00010020106) #25	NKD1 (ENSVURG00010020108) #26	ENSVURG00010020128 #27	ADCY7 (ENSVURG00010020149) #28	TENT4B (ENSVURG00010020181) #29	HEATR3 (ENSVURG00010020193) #30	CNEP1R1 (ENSVURG00010020204) #31	ENSVURG00010020211	ZNF423 (ENSVURG00010020223) #32
koala	MODERN SPECIES	19	ENSPCIG00000033949 #7	ENSPCIG00000016283 #7	SLC6A2 (ENSPCIG00000003091) #8	ENSPCIG00000033526	LPCAT2 (ENSPCIG00000003075) #9	MMP2 (ENSPCIG00000003051) #10	IRX6 (ENSPCIG00000022974) #11	IRX5 (ENSPCIG00000013874) #12	FTO (ENSPCIG00000024376) #15	RPGRIP1L (ENSPCIG00000024349) #16	ENSPCIG00000024347	AKTIP (ENSPCIG00000024346) #17	RBL2 (ENSPCIG00000024344) #18	CHD9 (ENSPCIG00000017215) #19	TOX3 (ENSPCIG00000027529) #21	SALL1 (ENSPCIG00000017840) #22	ENSPCIG00000032216	CYLD (ENSPCIG00000017853) #23	NOD2 (ENSPCIG00000017861) #24	SNX20 (ENSPCIG00000017863) #25	NKD1 (ENSPCIG00000017864) #26	BRD7 (ENSPCIG00000017871) #27	ADCY7 (ENSPCIG00000016804) #28	TENT4B (ENSPCIG00000018132) #29	HEATR3 (ENSPCIG00000012841) #30	CNEP1R1 (ENSPCIG00000003801) #31	ENSPCIG00000002963	ZNF423 (ENSPCIG00000021085) #32	ENSPCIG00000021089	ENSPCIG00000033644	CBLN1 (ENSPCIG00000031036) #34
Wallaby	MODERN SPECIES	10653																SALL1 (ENSMEUG00000012206) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000005170 #7	SLC6A2 (ENSSHAG00000002816) #8	CAPNS2 (ENSSHAG00000028677)	LPCAT2 (ENSSHAG00000012383) #9	MMP2 (ENSSHAG00000012197) #10	IRX6 (ENSSHAG00000011163) #11	IRX5 (ENSSHAG00000006589) #12	ENSSHAG00000027911	IRX3 (ENSSHAG00000012619) #14	FTO (ENSSHAG00000009174) #15	RPGRIP1L (ENSSHAG00000008212) #16	AKTIP (ENSSHAG00000024810) #17	RBL2 (ENSSHAG00000006471) #18	CHD9 (ENSSHAG00000002719) #19	TOX3 (ENSSHAG00000022477) #21	SALL1 (ENSSHAG00000009477) #22	CYLD (ENSSHAG00000003079) #23	NOD2 (ENSSHAG00000029900) #24	SNX20 (ENSSHAG00000018921) #25	NKD1 (ENSSHAG00000028041) #26	BRD7 (ENSSHAG00000018810) #27	ADCY7 (ENSSHAG00000018774) #28	TENT4B (ENSSHAG00000018746) #29	HEATR3 (ENSSHAG00000014261) #30	CNEP1R1 (ENSSHAG00000018694) #31	ENSSHAG00000018669	ZNF423 (ENSSHAG00000018342) #32	ENSSHAG00000018055 #33	CBLN1 (ENSSHAG00000026579) #34	N4BP1 (ENSSHAG00000016460) #35	ENSSHAG00000020968
Opossum	MODERN SPECIES		IRX5 (ENSMODG00000013202) #12	ENSMODG00000013200	ENSMODG00000047345	IRX3 (ENSMODG00000013192) #14	FTO (ENSMODG00000009684) #15	RPGRIP1L (ENSMODG00000013180) #16	AKTIP (ENSMODG00000025788) #17	RBL2 (ENSMODG00000013167) #18	ENSMODG00000028845	CHD9 (ENSMODG00000013142) #19	ENSMODG00000023478	TOX3 (ENSMODG00000043801) #21	ENSMODG00000048280	ENSMODG00000046352	ENSMODG00000043097	SALL1 (ENSMODG00000013114) #22	CYLD (ENSMODG00000013111) #23	NOD2 (ENSMODG00000013087) #24	SNX20 (ENSMODG00000013071) #25	NKD1 (ENSMODG00000013068) #26	ENSMODG00000013057 #27	ADCY7 (ENSMODG00000013047) #28	TENT4B (ENSMODG00000013026) #29	HEATR3 (ENSMODG00000013019) #30	CNEP1R1 (ENSMODG00000048858) #31	ENSMODG00000028787	ZNF423 (ENSMODG00000012988) #32	ENSMODG00000044145	CBLN1 (ENSMODG00000012983) #34	ENSMODG00000037529	ENSMODG00000012970 #35
Platypus	MODERN SPECIES	2	ENSOANG00000050825	ENSOANG00000011089	SLC6A2 (ENSOANG00000011092) #8	LPCAT2 (ENSOANG00000011096) #9	MMP2 (ENSOANG00000011098) #10	ENSOANG00000029378 #11	IRX5 (ENSOANG00000044475) #12	ENSOANG00000045495	ENSOANG00000050066 #15	ENSOANG00000013407 #15	RPGRIP1L (ENSOANG00000013406) #16	AKTIP (ENSOANG00000013405) #17	RBL2 (ENSOANG00000013404) #18	CHD9 (ENSOANG00000013401) #19	TOX3 (ENSOANG00000013400) #21	SALL1 (ENSOANG00000048866) #22	CYLD (ENSOANG00000013398) #23	NOD2 (ENSOANG00000013397) #24	SNX20 (ENSOANG00000045105) #25	NKD1 (ENSOANG00000013395) #26	BRD7 (ENSOANG00000001329) #27	ADCY7 (ENSOANG00000050127) #28	TENT4B (ENSOANG00000000589) #29	HEATR3 (ENSOANG00000000588) #30	CNEP1R1 (ENSOANG00000000587) #31	ENSOANG00000000586	ZNF423 (ENSOANG00000000584) #32	ENSOANG00000030661 #33	CBLN1 (ENSOANG00000047584) #34	ST14 (ENSOANG00000000581)	N4BP1 (ENSOANG00000000582) #35
Sauria	ANCESTRAL SPECIES	14	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Lepidosauria	ANCESTRAL SPECIES	49		ENSGT00950000182841.a	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37
Episquamata	ANCESTRAL SPECIES	11	ENSGT00940000160204	ENSGT00940000158070	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Laterata	ANCESTRAL SPECIES	28	ENSGT00940000160204	ENSGT00940000158070	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Common wall lizard	MODERN SPECIES	16	CBLN1 (ENSPMRG00000019262) #34	ENSPMRG00000019258	ZNF423 (ENSPMRG00000019246) #32	ENSPMRG00000019239	HEATR3 (ENSPMRG00000019219) #30	TENT4B (ENSPMRG00000019207) #29	ADCY7 (ENSPMRG00000019178) #28	BRD7 (ENSPMRG00000018967) #27	ENSPMRG00000018916	NKD1 (ENSPMRG00000018905) #26	SNX20 (ENSPMRG00000018900) #25	AKTIP (ENSPMRG00000018887) #17	RBL2 (ENSPMRG00000018868) #18	CHD9 (ENSPMRG00000011919) #19	TOX3 (ENSPMRG00000011591) #21	SALL1 (ENSPMRG00000011586) #22	CYLD (ENSPMRG00000011569) #23	ENSPMRG00000011564	WFDC1 (ENSPMRG00000011562)	KCNG4 (ENSPMRG00000011560)	HSBP1 (ENSPMRG00000011555)	MLYCD (ENSPMRG00000011551)	ENSPMRG00000011543	CDH13 (ENSPMRG00000011514)	MPHOSPH6 (ENSPMRG00000011504)	ENSPMRG00000011499	ENSPMRG00000011493	HSD17B2 (ENSPMRG00000011487)	SDR42E1 (ENSPMRG00000011483)	ENSPMRG00000011479	SLC6A2 (ENSPMRG00000011472) #8
Argentine black and white tegu	MODERN SPECIES	51	SDR42E1 (ENSSMRG00000006244)	SLC6A2 (ENSSMRG00000006212) #8	CAPNS2 (ENSSMRG00000006204)	LPCAT2 (ENSSMRG00000006198) #9	MMP2 (ENSSMRG00000006186) #10	ENSSMRG00000006173	IRX6 (ENSSMRG00000006144) #11	IRX5 (ENSSMRG00000006134) #12	IRX3 (ENSSMRG00000006062) #14	FTO (ENSSMRG00000006034) #15	RPGRIP1L (ENSSMRG00000005963) #16	AKTIP (ENSSMRG00000005962) #17	RBL2 (ENSSMRG00000005954) #18	CHD9 (ENSSMRG00000005943) #19	TOX3 (ENSSMRG00000005925) #21	SALL1 (ENSSMRG00000005776) #22	CYLD (ENSSMRG00000005740) #23	SNX20 (ENSSMRG00000005732) #25	NKD1 (ENSSMRG00000005727) #26	BRD7 (ENSSMRG00000005252) #27	ADCY7 (ENSSMRG00000005205) #28	TENT4B (ENSSMRG00000005198) #29	HEATR3 (ENSSMRG00000005192) #30	CNEP1R1 (ENSSMRG00000005189) #31	ENSSMRG00000005169	ZNF423 (ENSSMRG00000005142) #32	ENSSMRG00000005139	CBLN1 (ENSSMRG00000005135) #34	N4BP1 (ENSSMRG00000005116) #35	SIAH1 (ENSSMRG00000005113) #37	LONP2 (ENSSMRG00000005107)
Toxicofera	ANCESTRAL SPECIES	16	ENSGT00390000012054.b.ab	ENSGT00940000160204	ENSGT00940000158070	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Elapidae	ANCESTRAL SPECIES	17	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478	ENSGT00940000156844.a	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00960000189988	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00530000063553.b.b.z.a	ENSGT00940000154837 #37
Elapidae_a	ANCESTRAL SPECIES	28	ENSGT00940000158960 #8	ENSGT00950000182843.a.a.a.b.a.b	ENSGT00940000155478	ENSGT00940000156844.a	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00960000189988	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b.z.b
Acanthophiinae	ANCESTRAL SPECIES	26	ENSGT00940000160204	ENSGT00940000158070	ENSGT00940000158960 #8	ENSGT00940000155478	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00960000189988	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00950000186190	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b.z.b
Eastern brown snake	MODERN SPECIES	65	HSD17B2 (ENSPTXG00000009778)	SDR42E1 (ENSPTXG00000009777)	SLC6A2 (ENSPTXG00000009562) #8	ENSPTXG00000009559	LPCAT2 (ENSPTXG00000009556) #9	MMP2 (ENSPTXG00000009548) #10	ENSPTXG00000009547 #11	IRX5 (ENSPTXG00000009546) #12	FTO (ENSPTXG00000009544) #15	RPGRIP1L (ENSPTXG00000009543) #16	AKTIP (ENSPTXG00000009542) #17	RBL2 (ENSPTXG00000009245) #18	CHD9 (ENSPTXG00000009241) #19	ENSPTXG00000009240	TOX3 (ENSPTXG00000009239) #21	SALL1 (ENSPTXG00000009238) #22	ENSPTXG00000009237	CYLD (ENSPTXG00000009236) #23	SNX20 (ENSPTXG00000009222) #25	NKD1 (ENSPTXG00000009220) #26	BRD7 (ENSPTXG00000009078) #27	ADCY7 (ENSPTXG00000009074) #28	TENT4B (ENSPTXG00000009072) #29	HEATR3 (ENSPTXG00000009063) #30	CNEP1R1 (ENSPTXG00000009061) #31	ENSPTXG00000009059	ZNF423 (ENSPTXG00000009058) #32	ENSPTXG00000009057	ENSPTXG00000009056 #34	N4BP1 (ENSPTXG00000009055) #35	SIAH1 (ENSPTXG00000009054) #37
Mainland tiger snake	MODERN SPECIES	677																SALL1 (ENSNSUG00000016263) #22
Blue-lipped sea krait	MODERN SPECIES	4214																SALL1 (ENSLLTG00000000379) #22
Indian cobra	MODERN SPECIES	12	ENSNNAG00000018505	HSD17B2 (ENSNNAG00000018483)	SDR42E1 (ENSNNAG00000018469)	SLC6A2 (ENSNNAG00000018463) #8	ENSNNAG00000018460	LPCAT2 (ENSNNAG00000018456) #9	MMP2 (ENSNNAG00000018451) #10	IRX5 (ENSNNAG00000018448) #12	IRX3 (ENSNNAG00000018445) #14	FTO (ENSNNAG00000018444) #15	ENSNNAG00000018440 #16	AKTIP (ENSNNAG00000018435) #17	RBL2 (ENSNNAG00000018431) #18	CHD9 (ENSNNAG00000014441) #19	ENSNNAG00000013764	SALL1 (ENSNNAG00000013749) #22	CYLD (ENSNNAG00000013712) #23	SNX20 (ENSNNAG00000013703) #25	NKD1 (ENSNNAG00000013679) #26	BRD7 (ENSNNAG00000013586) #27	ADCY7 (ENSNNAG00000013071) #28	TENT4B (ENSNNAG00000012985) #29	HEATR3 (ENSNNAG00000012932) #30	CNEP1R1 (ENSNNAG00000012910) #31	ENSNNAG00000012817	ENSNNAG00000012795 #32	ENSNNAG00000012776 #32	CBLN1 (ENSNNAG00000012761) #34	N4BP1 (ENSNNAG00000012736) #35	ENSNNAG00000012720	SIAH1 (ENSNNAG00000012705) #37
Lizard	MODERN SPECIES	841													ENSACAG00000043219	TOX3 (ENSACAG00000012303) #21	ENSACAG00000035877	SALL1 (ENSACAG00000014399) #22	CYLD (ENSACAG00000014388) #23	SNX20 (ENSACAG00000045503) #25	NKD1 (ENSACAG00000014357) #26	ENSACAG00000044873	BRD7 (ENSACAG00000014280) #27	ADCY7 (ENSACAG00000014022) #28	TENT4B (ENSACAG00000013952) #29	HEATR3 (ENSACAG00000013838) #30	ENSACAG00000040554 #31	ENSACAG00000042432	ENSACAG00000013833	ENSACAG00000035677	ENSACAG00000045057	ZNF423 (ENSACAG00000013803) #32
tuatara	MODERN SPECIES	242																SALL1 (ENSSPUG00000000156) #22	CYLD (ENSSPUG00000000184) #23	SNX20 (ENSSPUG00000000234) #25
Archelosauria	ANCESTRAL SPECIES	16	ENSGT01030000235305	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Cryptodira	ANCESTRAL SPECIES	14	ENSGT00940000157672	ENSGT00950000182841.a.y	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Testudinoidea	ANCESTRAL SPECIES	13	ENSGT00950000182841.a.y.a.a.a.a.a.a	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT01000000220330	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492.w.b #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
Emydidae	ANCESTRAL SPECIES	33	ENSGT00950000182841.a.y.a.a.a.a.a.a	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT01000000220330	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492.w.b #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b
painted turtle	MODERN SPECIES	4	SLC6A2 (ENSCPBG00000012155) #8	LPCAT2 (ENSCPBG00000012158) #9	CAPNS2 (ENSCPBG00000012162)	ENSCPBG00000012164	MMP2 (ENSCPBG00000012165) #10	IRX6 (ENSCPBG00000012167) #11	IRX5 (ENSCPBG00000012173) #12	ENSCPBG00000012177	IRX3 (ENSCPBG00000012189) #14	FTO (ENSCPBG00000012192) #15	RPGRIP1L (ENSCPBG00000012201) #16	AKTIP (ENSCPBG00000012207) #17	RBL2 (ENSCPBG00000012231) #18	CHD9 (ENSCPBG00000012459) #19	TOX3 (ENSCPBG00000015917) #21	SALL1 (ENSCPBG00000015924) #22	CYLD (ENSCPBG00000015931) #23	SNX20 (ENSCPBG00000015934) #25	NKD1 (ENSCPBG00000015936) #26	BRD7 (ENSCPBG00000015938) #27	ADCY7 (ENSCPBG00000015953) #28	TENT4B (ENSCPBG00000015960) #29	HEATR3 (ENSCPBG00000015964) #30	CNEP1R1 (ENSCPBG00000015966) #31	ENSCPBG00000015969	ZNF423 (ENSCPBG00000015985) #32	ENSCPBG00000015998	CBLN1 (ENSCPBG00000016000) #34	N4BP1 (ENSCPBG00000016004) #35	SIAH1 (ENSCPBG00000016014) #37	LONP2 (ENSCPBG00000016016)
Three-toed box turtle	MODERN SPECIES	60	ENSTMTG00000002486	SLC6A2 (ENSTMTG00000002534) #8	LPCAT2 (ENSTMTG00000002617) #9	CAPNS2 (ENSTMTG00000002630)	MMP2 (ENSTMTG00000002636) #10	ENSTMTG00000002642 #11	IRX5 (ENSTMTG00000002648) #12	IRX3 (ENSTMTG00000002652) #14	FTO (ENSTMTG00000002656) #15	RPGRIP1L (ENSTMTG00000002670) #16	AKTIP (ENSTMTG00000014379) #17	RBL2 (ENSTMTG00000014398) #18	CHD9 (ENSTMTG00000015377) #19	ENSTMTG00000022436	TOX3 (ENSTMTG00000022443) #21	SALL1 (ENSTMTG00000022452) #22	CYLD (ENSTMTG00000022457) #23	SNX20 (ENSTMTG00000022462) #25	NKD1 (ENSTMTG00000022468) #26	BRD7 (ENSTMTG00000022489) #27	ADCY7 (ENSTMTG00000022528) #28	TENT4B (ENSTMTG00000022548) #29	HEATR3 (ENSTMTG00000022550) #30	CNEP1R1 (ENSTMTG00000022551) #31	ENSTMTG00000022552	ZNF423 (ENSTMTG00000022555) #32	ENSTMTG00000022559	CBLN1 (ENSTMTG00000022561) #34	N4BP1 (ENSTMTG00000022563) #35	SIAH1 (ENSTMTG00000022565) #37	LONP2 (ENSTMTG00000022570)
Testudinidae	ANCESTRAL SPECIES	17	ENSGT00950000182841.a.y.a.a.a.a.a.a	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT01000000220330	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00940000158492.w.b #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00940000159578
Goode s thornscrub tortoise	MODERN SPECIES	3	SLC6A2 (ENSGEVG00005012091) #8	LPCAT2 (ENSGEVG00005012528) #9	CAPNS2 (ENSGEVG00005012569)	MMP2 (ENSGEVG00005012646) #10	ENSGEVG00005012896 #11	IRX5 (ENSGEVG00005012952) #12	IRX3 (ENSGEVG00005012997) #14	FTO (ENSGEVG00005013146) #15	RPGRIP1L (ENSGEVG00005013217) #16	AKTIP (ENSGEVG00005013365) #17	RBL2 (ENSGEVG00005013409) #18	CHD9 (ENSGEVG00005013539) #19	ENSGEVG00005013688	TOX3 (ENSGEVG00005013709) #21	ENSGEVG00005013844	SALL1 (ENSGEVG00005013862) #22	CYLD (ENSGEVG00005013915) #23	SNX20 (ENSGEVG00005013947) #25	NKD1 (ENSGEVG00005013964) #26	BRD7 (ENSGEVG00005014130) #27	ADCY7 (ENSGEVG00005014804) #28	TENT4B (ENSGEVG00005014891) #29	HEATR3 (ENSGEVG00005014998) #30	CNEP1R1 (ENSGEVG00005015041) #31	ENSGEVG00005015090	ZNF423 (ENSGEVG00005015167) #32	CBLN1 (ENSGEVG00005015229) #34	N4BP1 (ENSGEVG00005015279) #35	SIAH1 (ENSGEVG00005015318) #37	LONP2 (ENSGEVG00005015339)	ABCC12 (ENSGEVG00005015407)
Abingdon island giant tortoise	MODERN SPECIES	2822															ENSCABG00000015089	SALL1 (ENSCABG00000015091) #22	CYLD (ENSCABG00000015097) #23	SNX20 (ENSCABG00000015113) #25
Chinese turtle	MODERN SPECIES	940	ENSPSIG00000001625	SLC6A2 (ENSPSIG00000016841) #8	LPCAT2 (ENSPSIG00000017713) #9	MMP2 (ENSPSIG00000017859) #10	IRX6 (ENSPSIG00000006856) #11	IRX5 (ENSPSIG00000006956) #12	IRX3 (ENSPSIG00000006981) #14	ENSPSIG00000001627	FTO (ENSPSIG00000007424) #15	RPGRIP1L (ENSPSIG00000007549) #16	AKTIP (ENSPSIG00000007566) #17	RBL2 (ENSPSIG00000007573) #18	CHD9 (ENSPSIG00000008099) #19	TOX3 (ENSPSIG00000008201) #21	ENSPSIG00000001632	SALL1 (ENSPSIG00000008582) #22	CYLD (ENSPSIG00000008623) #23	SNX20 (ENSPSIG00000009076) #25	NKD1 (ENSPSIG00000009112) #26	BRD7 (ENSPSIG00000010123) #27	ENSPSIG00000010651 #28	ENSPSIG00000010658 #28	TENT4B (ENSPSIG00000010667) #29	HEATR3 (ENSPSIG00000010737) #30	CNEP1R1 (ENSPSIG00000011071) #31	ENSPSIG00000011077	ZNF423 (ENSPSIG00000011110) #32	ENSPSIG00000011186	ENSPSIG00000011190	CBLN1 (ENSPSIG00000011197) #34	N4BP1 (ENSPSIG00000011341) #35
Archosauria	ANCESTRAL SPECIES	14	ENSGT00950000182841.a	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00940000159578	ENSGT00950000183118.B
Aves	ANCESTRAL SPECIES	22	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000155478	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00940000159578	ENSGT00950000183118.B
Neognathae	ANCESTRAL SPECIES	13	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000155478	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Neognathae_b	ANCESTRAL SPECIES	15	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000155478	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B.f #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00960000190127	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B
Neognathae_c	ANCESTRAL SPECIES	18	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B.f #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00960000190127	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811.c #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	19	ENSSHBG00005004983	ENSSHBG00005004922	ENSSHBG00005004890	SLC6A2 (ENSSHBG00005004882) #8	LPCAT2 (ENSSHBG00005004875) #9	ENSSHBG00005004868 #10	ENSSHBG00005004859 #11	ENSSHBG00005004850 #12	ENSSHBG00005004846 #14	FTO (ENSSHBG00005004822) #15	RPGRIP1L (ENSSHBG00005004805) #16	ENSSHBG00005004785 #17	ENSSHBG00005004768 #18	ENSSHBG00005002921 #19	ENSSHBG00005002199 #21	ENSSHBG00005002192 #22	CYLD (ENSSHBG00005002168) #23	ENSSHBG00005002150 #25	ENSSHBG00005002133 #26	ENSSHBG00005002050	BRD7 (ENSSHBG00005002033) #27	ADCY7 (ENSSHBG00005001991) #28	ENSSHBG00005001960 #29	ENSSHBG00005001903 #30	CNEP1R1 (ENSSHBG00005001851) #31	ENSSHBG00005001748 #32	ENSSHBG00005001669 #34	ENSSHBG00005001653 #35	ENSSHBG00005001629 #37	LONP2 (ENSSHBG00005001588)	ENSSHBG00005001570
Kakapo	MODERN SPECIES	4	ENSSHBG00005001082	ENSSHBG00005001084	ENSSHBG00005001085	ENSSHBG00005001087	ENSSHBG00005001088	ENSSHBG00005001089	ENSSHBG00005001090	ENSSHBG00005001092	ENSSHBG00005001094	ENSSHBG00005001095	ENSSHBG00005001096	ENSSHBG00005009606 #18	ENSSHBG00005009625 #18	ENSSHBG00005009703 #19	ENSSHBG00005009914 #21	ENSSHBG00005009925 #22	ENSSHBG00005009934 #25	ENSSHBG00005009952 #26	ENSSHBG00005010003	ENSSHBG00005010115	ENSSHBG00005010154	ENSSHBG00005010247	ENSSHBG00005010325	ENSSHBG00005010393	ENSSHBG00005010713	CFDP1 (ENSSHBG00005010819)	ENSSHBG00005010841	ENSSHBG00005010876	ENSSHBG00005010945	ENSSHBG00005011005	ENSSHBG00005011077
Golden eagle	MODERN SPECIES	25	ENSACCG00020000798	ENSACCG00020000779	SLC12A4 (ENSACCG00020000700)	SLC6A2 (ENSACCG00020000586) #8	LPCAT2 (ENSACCG00020000417) #9	MMP2 (ENSACCG00020000389) #10	ENSACCG00020003392 #11	IRX5 (ENSACCG00020003380) #12	IRX3 (ENSACCG00020003366) #14	FTO (ENSACCG00020003336) #15	RPGRIP1L (ENSACCG00020003265) #16	AKTIP (ENSACCG00020003199) #17	RBL2 (ENSACCG00020003164) #18	CHD9 (ENSACCG00020003121) #19	TOX3 (ENSACCG00020003095) #21	SALL1 (ENSACCG00020003074) #22	CYLD (ENSACCG00020003038) #23	SNX20 (ENSACCG00020003015) #25	NKD1 (ENSACCG00020002998) #26	BRD7 (ENSACCG00020002949) #27	ADCY7 (ENSACCG00020002875) #28	TENT4B (ENSACCG00020002781) #29	HEATR3 (ENSACCG00020002623) #30	CNEP1R1 (ENSACCG00020002590) #31	ZNF423 (ENSACCG00020002554) #32	CBLN1 (ENSACCG00020002538) #34	N4BP1 (ENSACCG00020002525) #35	SIAH1 (ENSACCG00020002509) #37	LONP2 (ENSACCG00020002482)	PHKB (ENSACCG00020002367)	ITFG1 (ENSACCG00020002263)
Passeriformes	ANCESTRAL SPECIES	13	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000155478	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B.e #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00960000190127	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B
Great tit	MODERN SPECIES	2	ENSPMJG00000001595	DPEP2 (ENSPMJG00000001604)	SLC12A4 (ENSPMJG00000001616)	SLC6A2 (ENSPMJG00000001646) #8	LPCAT2 (ENSPMJG00000001668) #9	ENSPMJG00000001678	MMP2 (ENSPMJG00000001696) #10	IRX6 (ENSPMJG00000001698) #11	IRX5 (ENSPMJG00000001724) #12	FTO (ENSPMJG00000001806) #15	ENSPMJG00000001857 #16	AKTIP (ENSPMJG00000001877) #17	RBL2 (ENSPMJG00000001882) #18	CHD9 (ENSPMJG00000001906) #19	TOX3 (ENSPMJG00000002068) #21	SALL1 (ENSPMJG00000002204) #22	CYLD (ENSPMJG00000002241) #23	SNX20 (ENSPMJG00000002269) #25	NKD1 (ENSPMJG00000002321) #26	ENSPMJG00000002341	BRD7 (ENSPMJG00000002349) #27	ADCY7 (ENSPMJG00000002418) #28	TENT4B (ENSPMJG00000002519) #29	HEATR3 (ENSPMJG00000002534) #30	CNEP1R1 (ENSPMJG00000002544) #31	ZNF423 (ENSPMJG00000002597) #32	CBLN1 (ENSPMJG00000002660) #34	N4BP1 (ENSPMJG00000002728) #35	SIAH1 (ENSPMJG00000002759) #37	LONP2 (ENSPMJG00000002764)	PHKB (ENSPMJG00000002784)
Passeriformes_d	ANCESTRAL SPECIES	13	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043.a #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00960000190127	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B
Passeriformes_g	ANCESTRAL SPECIES	17	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043.a #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00960000190127	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B
Medium ground finch	MODERN SPECIES	118											ENSGFOG00000014818	AKTIP (ENSGFOG00000014817) #17	RBL2 (ENSGFOG00000014816) #18	CHD9 (ENSGFOG00000014815) #19	TOX3 (ENSGFOG00000014814) #21	SALL1 (ENSGFOG00000014812) #22	CYLD (ENSGFOG00000014811) #23	SNX20 (ENSGFOG00000014810) #25	NKD1 (ENSGFOG00000014809) #26	ENSGFOG00000014808	BRD7 (ENSGFOG00000014801) #27	ADCY7 (ENSGFOG00000014793) #28	TENT4B (ENSGFOG00000014790) #29	HEATR3 (ENSGFOG00000014785) #30	CNEP1R1 (ENSGFOG00000014782) #31	ZNF423 (ENSGFOG00000014781) #32	N4BP1 (ENSGFOG00000014780) #35	SIAH1 (ENSGFOG00000014779) #37	LONP2 (ENSGFOG00000014777)
Passeroidea	ANCESTRAL SPECIES	17	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT00940000166682	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.d.a #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043.a #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000008576 #31	ENSGT00390000012529 #30	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Zebra finch	MODERN SPECIES	2	ENSTGUG00000007047	ENSTGUG00000027159	SLC12A4 (ENSTGUG00000007074)	SLC6A2 (ENSTGUG00000007218) #8	LPCAT2 (ENSTGUG00000007314) #9	MMP2 (ENSTGUG00000007337) #10	IRX6 (ENSTGUG00000020135) #11	IRX5 (ENSTGUG00000026210) #12	IRX3 (ENSTGUG00000028899) #14	FTO (ENSTGUG00000007401) #15	ENSTGUG00000027769	AKTIP (ENSTGUG00000007406) #17	RBL2 (ENSTGUG00000007426) #18	CHD9 (ENSTGUG00000007476) #19	ENSTGUG00000007508 #21	SALL1 (ENSTGUG00000007514) #22	ENSTGUG00000022644
Common canary	MODERN SPECIES	14	DUS2 (ENSSCAG00000004988)	DDX28 (ENSSCAG00000004982)	ENSSCAG00000004975	ENSSCAG00000004963	SLC12A4 (ENSSCAG00000004932)	SLC6A2 (ENSSCAG00000004914) #8	CAPNS2 (ENSSCAG00000004910)	LPCAT2 (ENSSCAG00000004906) #9	MMP2 (ENSSCAG00000004897) #10	ENSSCAG00000004891 #11	FTO (ENSSCAG00000004856) #15	AKTIP (ENSSCAG00000004831) #17	RBL2 (ENSSCAG00000004824) #18	CHD9 (ENSSCAG00000004806) #19	TOX3 (ENSSCAG00000004793) #21	SALL1 (ENSSCAG00000004776) #22	CYLD (ENSSCAG00000004758) #23	SNX20 (ENSSCAG00000004752) #25	NKD1 (ENSSCAG00000004748) #26	BRD7 (ENSSCAG00000004669) #27	ADCY7 (ENSSCAG00000004597) #28	TENT4B (ENSSCAG00000004547) #29	HEATR3 (ENSSCAG00000004471) #30	ENSSCAG00000004461	ZNF423 (ENSSCAG00000004455) #32	N4BP1 (ENSSCAG00000004443) #35	SIAH1 (ENSSCAG00000004438) #37	LONP2 (ENSSCAG00000004317)	PHKB (ENSSCAG00000004271)	ITFG1 (ENSSCAG00000004260)	NETO2 (ENSSCAG00000004251)
Flycatcher	MODERN SPECIES	2	ENSFALG00000007757	ENSFALG00000026060	DUS2 (ENSFALG00000007759)	ENSFALG00000014595	ENSFALG00000007762	DPEP2 (ENSFALG00000007766)	SLC12A4 (ENSFALG00000007770)	SLC6A2 (ENSFALG00000007795) #8	ENSFALG00000028070	LPCAT2 (ENSFALG00000007864) #9	MMP2 (ENSFALG00000007900) #10	ENSFALG00000026677 #11	ENSFALG00000028077 #12	FTO (ENSFALG00000007914) #15	TOX3 (ENSFALG00000000072) #21	SALL1 (ENSFALG00000000074) #22	CYLD (ENSFALG00000000075) #23	SNX20 (ENSFALG00000000077) #25	NKD1 (ENSFALG00000000078) #26	ENSFALG00000027589	BRD7 (ENSFALG00000000080) #27	ADCY7 (ENSFALG00000000086) #28	TENT4B (ENSFALG00000000087) #29	HEATR3 (ENSFALG00000000089) #30	CNEP1R1 (ENSFALG00000025598) #31	ZNF423 (ENSFALG00000000097) #32	CBLN1 (ENSFALG00000000098) #34	ENSFALG00000026934	N4BP1 (ENSFALG00000000101) #35	SIAH1 (ENSFALG00000000104) #37	LONP2 (ENSFALG00000000103)
Galloanserae	ANCESTRAL SPECIES	12	ENSGT01030000235333	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Anatidae	ANCESTRAL SPECIES	17	ENSGT01030000235333	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Duck	MODERN SPECIES	3	ENSAPLG00000004353	DPEP2 (ENSAPLG00000004307)	ENSAPLG00000022247	SLC12A4 (ENSAPLG00000004021)	ENSAPLG00000003879 #8	LPCAT2 (ENSAPLG00000003809) #9	CAPNS2 (ENSAPLG00000023985)	MMP2 (ENSAPLG00000003788) #10	IRX3 (ENSAPLG00000019607) #14	FTO (ENSAPLG00000016324) #15	RPGRIP1L (ENSAPLG00000016340) #16	AKTIP (ENSAPLG00000016399) #17	RBL2 (ENSAPLG00000001177) #18	CHD9 (ENSAPLG00000002826) #19	TOX3 (ENSAPLG00000003299) #21	SALL1 (ENSAPLG00000003356) #22	CYLD (ENSAPLG00000012780) #23	SNX20 (ENSAPLG00000013062) #25	NKD1 (ENSAPLG00000013087) #26	ENSAPLG00000027872	BRD7 (ENSAPLG00000013363) #27	ADCY7 (ENSAPLG00000013887) #28	TENT4B (ENSAPLG00000014941) #29	CNEP1R1 (ENSAPLG00000025705) #31	ENSAPLG00000026611	HEATR3 (ENSAPLG00000009802) #30	ZNF423 (ENSAPLG00000009508) #32	ENSAPLG00000027161	ENSAPLG00000027305	ENSAPLG00000006819	ENSAPLG00000006820
Pink-footed goose	MODERN SPECIES	15	ENSABRG00000022667	ENSABRG00000022665	SLC12A4 (ENSABRG00000022298)	SLC6A2 (ENSABRG00000022187) #8	LPCAT2 (ENSABRG00000022184) #9	MMP2 (ENSABRG00000022132) #10	IRX6 (ENSABRG00000022116) #11	IRX5 (ENSABRG00000022092) #12	IRX3 (ENSABRG00000022069) #14	FTO (ENSABRG00000022047) #15	RPGRIP1L (ENSABRG00000022027) #16	AKTIP (ENSABRG00000021982) #17	RBL2 (ENSABRG00000021843) #18	CHD9 (ENSABRG00000020362) #19	TOX3 (ENSABRG00000020053) #21	SALL1 (ENSABRG00000020030) #22
Phasianidae	ANCESTRAL SPECIES	12	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000166682	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706.x #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Phasianidae_b	ANCESTRAL SPECIES	14	ENSGT00940000161738	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00940000155706.x #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301.c #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158492 #32	ENSGT00940000159811 #34	ENSGT00940000158682 #35	ENSGT00940000154837 #37	ENSGT00530000063553.b.b	ENSGT00950000183118.B	ENSGT00390000013367
Chicken	MODERN SPECIES	2	DPEP2 (ENSGALG00010025325)	SLC12A4 (ENSGALG00010025353)	ENSGALG00010025372	SLC6A2 (ENSGALG00010025392) #8	LPCAT2 (ENSGALG00010025257) #9	MMP2 (ENSGALG00010025414) #10	IRX6 (ENSGALG00010025424) #11	IRX5 (ENSGALG00010025430) #12	IRX3 (ENSGALG00010025432) #14	FTO (ENSGALG00010021200) #15	RPGRIP1L (ENSGALG00010021298) #16	AKTIP (ENSGALG00010021747) #17	RBL2 (ENSGALG00010021778) #18	CHD9 (ENSGALG00010021789) #19	TOX3 (ENSGALG00010024523) #21	SALL1 (ENSGALG00010022707) #22	CYLD (ENSGALG00010022737) #23	SNX20 (ENSGALG00010022754) #25	NKD1 (ENSGALG00010024038) #26	BRD7 (ENSGALG00010024063) #27	ADCY7 (ENSGALG00010024074) #28	PAPD5 (ENSGALG00010024080) #29	HEATR3 (ENSGALG00010025910) #30	CNEP1R1 (ENSGALG00010024101) #31	ZNF423 (ENSGALG00010024152) #32	CBLN1 (ENSGALG00010024173) #34	N4BP1 (ENSGALG00010024178) #35	SIAH1 (ENSGALG00010024220) #37	LONP2 (ENSGALG00010024230)	PHKB (ENSGALG00010024263)	ITFG1 (ENSGALG00010024314)
Turkey	MODERN SPECIES	4	ENSMGAG00000005064 #35	ENSMGAG00000017995 #34	ENSMGAG00000021372 #32	ENSMGAG00000005058 #32	ENSMGAG00000022910	ENSMGAG00000018529 #31	ENSMGAG00000005016 #30	ENSMGAG00000021282 #30	ENSMGAG00000022137 #29	ENSMGAG00000004957 #29	ENSMGAG00000004849 #28	ENSMGAG00000004779 #27	ENSMGAG00000004728 #26	ENSMGAG00000004775 #25	ENSMGAG00000004739 #23	ENSMGAG00000004704 #22	ENSMGAG00000004689 #21	ENSMGAG00000020696 #19	ENSMGAG00000004642 #19	ENSMGAG00000020565	ENSMGAG00000004512 #17	ENSMGAG00000004556 #18	RPGRIP1L (ENSMGAG00000004492) #16	ENSMGAG00000004464 #15	ENSMGAG00000017825 #10	ENSMGAG00000022119	ENSMGAG00000004311 #9	ENSMGAG00000018372	ENSMGAG00000004090	ENSMGAG00000021306	ENSMGAG00000004072
Japanese quail	MODERN SPECIES	2	DPEP2 (ENSCJPG00005012390)	SLC12A4 (ENSCJPG00005012391)	SLC6A2 (ENSCJPG00005012392) #8	LPCAT2 (ENSCJPG00005012393) #9	CAPNS2 (ENSCJPG00005012394)	MMP2 (ENSCJPG00005012395) #10	IRX6 (ENSCJPG00005012397) #11	IRX5 (ENSCJPG00005012400) #12	IRX3 (ENSCJPG00005012408) #14	FTO (ENSCJPG00005012412) #15	RPGRIP1L (ENSCJPG00005012413) #16	AKTIP (ENSCJPG00005012414) #17	RBL2 (ENSCJPG00005012415) #18	CHD9 (ENSCJPG00005012416) #19	TOX3 (ENSCJPG00005014332) #21	SALL1 (ENSCJPG00005014342) #22	CYLD (ENSCJPG00005014348) #23	SNX20 (ENSCJPG00005014349) #25	NKD1 (ENSCJPG00005014352) #26	BRD7 (ENSCJPG00005014353) #27	ADCY7 (ENSCJPG00005014354) #28	TENT4B (ENSCJPG00005014355) #29	HEATR3 (ENSCJPG00005014356) #30	CNEP1R1 (ENSCJPG00005014357) #31	ZNF423 (ENSCJPG00005014360) #32	CBLN1 (ENSCJPG00005014363) #34	N4BP1 (ENSCJPG00005014367) #35	SIAH1 (ENSCJPG00005014369) #37	LONP2 (ENSCJPG00005014370)	PHKB (ENSCJPG00005014372)	ITFG1 (ENSCJPG00005014373)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	737	DUS2 (ENSSCUG00000011520)	ENSSCUG00000011522	DPEP2 (ENSSCUG00000011526)	SLC12A4 (ENSSCUG00000011529)	SLC6A2 (ENSSCUG00000011539) #8	LPCAT2 (ENSSCUG00000011558) #9	ENSSCUG00000011560	MMP2 (ENSSCUG00000011563) #10	FTO (ENSSCUG00000011569) #15	RPGRIP1L (ENSSCUG00000011575) #16	AKTIP (ENSSCUG00000011580) #17	RBL2 (ENSSCUG00000011595) #18	ENSSCUG00000011648 #19	ENSSCUG00000011651 #19	TOX3 (ENSSCUG00000011654) #21	ENSSCUG00000011661 #22	ENSSCUG00000011662 #22	ENSSCUG00000011664	CYLD (ENSSCUG00000011670) #23	SNX20 (ENSSCUG00000011673) #25	NKD1 (ENSSCUG00000011675) #26	BRD7 (ENSSCUG00000011678) #27	ADCY7 (ENSSCUG00000011683) #28	TENT4B (ENSSCUG00000011689) #29	HEATR3 (ENSSCUG00000011696) #30	CNEP1R1 (ENSSCUG00000011701) #31	ZNF423 (ENSSCUG00000011707) #32	N4BP1 (ENSSCUG00000011720) #35	SIAH1 (ENSSCUG00000011723) #37	LONP2 (ENSSCUG00000011726)	ABCC12 (ENSSCUG00000011735)
African ostrich	MODERN SPECIES	737	ENSSCUG00000011522	DPEP2 (ENSSCUG00000011526)	SLC12A4 (ENSSCUG00000011529)	SLC6A2 (ENSSCUG00000011539) #8	LPCAT2 (ENSSCUG00000011558) #9	ENSSCUG00000011560	MMP2 (ENSSCUG00000011563) #10	FTO (ENSSCUG00000011569) #15	RPGRIP1L (ENSSCUG00000011575) #16	AKTIP (ENSSCUG00000011580) #17	RBL2 (ENSSCUG00000011595) #18	ENSSCUG00000011648 #19	ENSSCUG00000011651 #19	TOX3 (ENSSCUG00000011654) #21	ENSSCUG00000011661 #22	ENSSCUG00000011662 #22	ENSSCUG00000011664	CYLD (ENSSCUG00000011670) #23	SNX20 (ENSSCUG00000011673) #25	NKD1 (ENSSCUG00000011675) #26	BRD7 (ENSSCUG00000011678) #27	ADCY7 (ENSSCUG00000011683) #28	TENT4B (ENSSCUG00000011689) #29	HEATR3 (ENSSCUG00000011696) #30	CNEP1R1 (ENSSCUG00000011701) #31	ZNF423 (ENSSCUG00000011707) #32	N4BP1 (ENSSCUG00000011720) #35	SIAH1 (ENSSCUG00000011723) #37	LONP2 (ENSSCUG00000011726)	ABCC12 (ENSSCUG00000011735)	PHKB (ENSSCUG00000011790)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	35	ENSCPRG00005002923	SLC6A2 (ENSCPRG00005002972) #8	LPCAT2 (ENSCPRG00005003047) #9	MMP2 (ENSCPRG00005003118) #10	IRX6 (ENSCPRG00005003377) #11	ENSCPRG00005003389 #12	IRX3 (ENSCPRG00005003402) #14	FTO (ENSCPRG00005003411) #15	RPGRIP1L (ENSCPRG00005003426) #16	AKTIP (ENSCPRG00005003438) #17	RBL2 (ENSCPRG00005003449) #18	CHD9 (ENSCPRG00005003455) #19	ENSCPRG00005003475	TOX3 (ENSCPRG00005003482) #21	ENSCPRG00005003503 #22	ENSCPRG00005003506 #22	CYLD (ENSCPRG00005003515) #23	SNX20 (ENSCPRG00005003533) #25	NKD1 (ENSCPRG00005003548) #26	BRD7 (ENSCPRG00005003570) #27	ADCY7 (ENSCPRG00005003595) #28	TENT4B (ENSCPRG00005003615) #29	HEATR3 (ENSCPRG00005003660) #30	CNEP1R1 (ENSCPRG00005003802) #31	ZNF423 (ENSCPRG00005003814) #32	CBLN1 (ENSCPRG00005003876) #34	N4BP1 (ENSCPRG00005003890) #35	SIAH1 (ENSCPRG00005003908) #37	LONP2 (ENSCPRG00005003912)	ABCC12 (ENSCPRG00005003919)	PHKB (ENSCPRG00005003951)
Australian saltwater crocodile	MODERN SPECIES	35	SLC12A4 (ENSCPRG00005002899)	ENSCPRG00005002923	SLC6A2 (ENSCPRG00005002972) #8	LPCAT2 (ENSCPRG00005003047) #9	MMP2 (ENSCPRG00005003118) #10	IRX6 (ENSCPRG00005003377) #11	ENSCPRG00005003389 #12	IRX3 (ENSCPRG00005003402) #14	FTO (ENSCPRG00005003411) #15	RPGRIP1L (ENSCPRG00005003426) #16	AKTIP (ENSCPRG00005003438) #17	RBL2 (ENSCPRG00005003449) #18	CHD9 (ENSCPRG00005003455) #19	ENSCPRG00005003475	TOX3 (ENSCPRG00005003482) #21	ENSCPRG00005003503 #22	ENSCPRG00005003506 #22	CYLD (ENSCPRG00005003515) #23	SNX20 (ENSCPRG00005003533) #25	NKD1 (ENSCPRG00005003548) #26	BRD7 (ENSCPRG00005003570) #27	ADCY7 (ENSCPRG00005003595) #28	TENT4B (ENSCPRG00005003615) #29	HEATR3 (ENSCPRG00005003660) #30	CNEP1R1 (ENSCPRG00005003802) #31	ZNF423 (ENSCPRG00005003814) #32	CBLN1 (ENSCPRG00005003876) #34	N4BP1 (ENSCPRG00005003890) #35	SIAH1 (ENSCPRG00005003908) #37	LONP2 (ENSCPRG00005003912)	ABCC12 (ENSCPRG00005003919)
Anura	ANCESTRAL SPECIES	167							ENSGT00940000153216.a.a.c.b.gb	ENSGT00940000154258.b	ENSGT00390000002200.a.a	ENSGT00940000159716	ENSGT00940000159191.q	ENSGT00940000153875.d.b	ENSGT00950000183202.a.b #18	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000006659	ENSGT00530000064134.a.a	ENSGT00940000158492 #32	ENSGT00940000159811 #34
Frog	MODERN SPECIES	4	gtf3c6 (ENSXETG00000004697)	hsdl1 (ENSXETG00000004698)	bcar1 (ENSXETG00000004699)	tmem170a (ENSXETG00000037745)	hsd11b2 (ENSXETG00000047542)	atp6v0d1 (ENSXETG00000042885)	agrp (ENSXETG00000035241)	mgc147117 (ENSXETG00000025643)	ENSXETG00000000344	ENSXETG00000047733	tppp3 (ENSXETG00000047601)	rbl2 (ENSXETG00000000346) #18	chd9 (ENSXETG00000000349) #19	tox3 (ENSXETG00000006442) #21	ENSXETG00000042682	sall1 (ENSXETG00000018417) #22	cyld (ENSXETG00000031250) #23	arl2bp (ENSXETG00000046933)	rspry1 (ENSXETG00000018409)	ENSXETG00000041888	psme3ip1 (ENSXETG00000011010)	cpne2 (ENSXETG00000033768)	ENSXETG00000045324	NLRC5 (ENSXETG00000039569)	cetp (ENSXETG00000034738)	herpud1 (ENSXETG00000026099)	psmd5 (ENSXETG00000019997)	ENSXETG00000045630	mt4 (ENSXETG00000020017)	ogfod1 (ENSXETG00000020018)	amfr (ENSXETG00000020020)
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000009607	LRRC4C (ENSLLEG00000009590)	ENSLLEG00000009570	ENSLLEG00000009561	ENSLLEG00000009534	ENSLLEG00000009511	RBL2 (ENSLLEG00000009180) #18	CHD9 (ENSLLEG00000008640) #19	ENSLLEG00000008576	ENSLLEG00000008559	TOX3 (ENSLLEG00000008463) #21	ENSLLEG00000008406	ENSLLEG00000008396	ENSLLEG00000008348	ENSLLEG00000008310	SALL1 (ENSLLEG00000021684) #22	ENSLLEG00000021664	ENSLLEG00000021618	CYLD (ENSLLEG00000021317) #23	ENSLLEG00000021271	NOD2 (ENSLLEG00000021013) #24	ENSLLEG00000020985	SNX20 (ENSLLEG00000020888) #25	NKD1 (ENSLLEG00000020777) #26	ENSLLEG00000020756	ENSLLEG00000020744	ENSLLEG00000020716	BRD7 (ENSLLEG00000019777) #27	ADCY7 (ENSLLEG00000018663) #28	ENSLLEG00000018590	TENT4B (ENSLLEG00000018460) #29
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1004																SALL1 (ENSLACG00000003556) #22	CYLD (ENSLACG00000009704) #23	NOD2 (ENSLACG00000010359) #24	SNX20 (ENSLACG00000011046) #25	NKD1 (ENSLACG00000011759) #26
Coelacanth	MODERN SPECIES	901	ENSLACG00000007042	ENSLACG00000007374	ENSLACG00000007685	ENSLACG00000008069	ENSLACG00000008771	ENSLACG00000008902	ENSLACG00000008948	ENSLACG00000009629	ENSLACG00000010414	ENSLACG00000010715	ENSLACG00000011016	ENSLACG00000011079	ENSLACG00000011322	ENSLACG00000012502	ENSLACG00000013612	ENSLACG00000014018 #22	METTL3 (ENSLACG00000014108)	TOX4 (ENSLACG00000014300)	RAB2B (ENSLACG00000014446)
Actinopterygii	ANCESTRAL SPECIES	38	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00980000201244	ENSGT00950000183003.a.b	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00960000187150	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Reedfish	MODERN SPECIES	17	SLC12A4 (ENSECRG00000014688)	SLC6A2 (ENSECRG00000014402) #8	lpcat2 (ENSECRG00000014310) #9	mmp2 (ENSECRG00000014263) #10	ENSECRG00000014233 #11	irx5b (ENSECRG00000014212) #12	irx3b (ENSECRG00000014188) #14	FTO (ENSECRG00000014153) #15	rpgrip1l (ENSECRG00000014042) #16	aktip (ENSECRG00000013950) #17	RBL2 (ENSECRG00000013888) #18	ENSECRG00000013838 #19	ENSECRG00000013811 #19	ENSECRG00000013793 #19	TOX3 (ENSECRG00000013765) #21	sall1a (ENSECRG00000013743) #22	CYLD (ENSECRG00000013689) #23	nod2 (ENSECRG00000013650) #24	SNX20 (ENSECRG00000013637) #25	nkd1 (ENSECRG00000013561) #26	ENSECRG00000013516 ##27	adcy7 (ENSECRG00000013403) #28	tent4b (ENSECRG00000013351) #29	heatr3 (ENSECRG00000013321) #30	cnep1r1 (ENSECRG00000013276) #31	si:ch211-216l23.2 (ENSECRG00000013231)	ENSECRG00000013209	ZNF423 (ENSECRG00000013167) #32	si:ch211-212o1.2 (ENSECRG00000013114)	cbln1 (ENSECRG00000013095) #34	n4bp1 (ENSECRG00000013073) #35
Neopterygii	ANCESTRAL SPECIES	51	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483 #12	ENSGT00980000201244	ENSGT00940000161299 #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00950000183202.a.b #18	ENSGT00520000055620.B #16	ENSGT01040000241257	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938 #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00530000064134.a.a	ENSGT00960000187150	ENSGT00940000158492 #32	ENSGT00940000163703.b	ENSGT00940000159811 #34	ENSGT00940000158682 #35
Spotted gar	MODERN SPECIES	662	amfra (ENSLOCG00000006944)	ENSLOCG00000006974	SLC12A4 (ENSLOCG00000006994)	SLC6A2 (ENSLOCG00000007036) #8	lpcat2 (ENSLOCG00000007060) #9	mmp2 (ENSLOCG00000007073) #10	irx6a (ENSLOCG00000007092) #11	irx5b (ENSLOCG00000007105) #12	irx3b (ENSLOCG00000007127) #14	ENSLOCG00000007139 #15	rpgrip1l (ENSLOCG00000007156) #16	aktip (ENSLOCG00000007183) #17	RBL2 (ENSLOCG00000007200) #18	CHD9 (ENSLOCG00000007225) #19	TOX3 (ENSLOCG00000007257) #21	sall1a (ENSLOCG00000007283) #22	CYLD (ENSLOCG00000007312) #23	SNX20 (ENSLOCG00000007326) #25	nkd1 (ENSLOCG00000007336) #26	brd7 (ENSLOCG00000007355) #27	adcy7 (ENSLOCG00000007376) #28	tent4b (ENSLOCG00000007410) #29	heatr3 (ENSLOCG00000007426) #30	cnep1r1 (ENSLOCG00000007445) #31	si:ch211-216l23.2 (ENSLOCG00000007455)	ZNF423 (ENSLOCG00000007466) #32	si:ch211-212o1.2 (ENSLOCG00000007493)	cbln1 (ENSLOCG00000007512) #34	n4bp1 (ENSLOCG00000007525) #35	siah1 (ENSLOCG00000007536) #37	lonp2 (ENSLOCG00000007553)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Otophysi	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000155938.a #22
Red-bellied piranha	MODERN SPECIES	185	impa1 (ENSPNAG00000027923)	fbxl7 (ENSPNAG00000006835)	zgc:55781 (ENSPNAG00000006617)	ralab (ENSPNAG00000027973)	mplkip (ENSPNAG00000027979)	inhbab (ENSPNAG00000027986)	afg3l2 (ENSPNAG00000004288)	plcd1b (ENSPNAG00000028052)	ctdsplb (ENSPNAG00000028104)	hhatla (ENSPNAG00000028167)	klhl40a (ENSPNAG00000028180)	ENSPNAG00000004318	ENSPNAG00000028212	ENSPNAG00000028220	si:dkey-29d8.3 (ENSPNAG00000006073)	ENSPNAG00000028248 #22	NFATC1 (ENSPNAG00000007025)	atg5 (ENSPNAG00000006021)	prdm1a (ENSPNAG00000028442)
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	89	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.a #12	ENSGT00980000201244	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00940000158596.b.a	ENSGT00940000159483.a.b #12	ENSGT00940000161299.e.a #14	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT01040000241257	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	149								ENSGT00940000158960.f #8	ENSGT00940000158511.a #10	ENSGT00940000158596.b.a	ENSGT00940000161299.e.b #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00940000155706.cb #19	ENSGT00940000158043.h #21	ENSGT00940000155938.b.a.a #22	ENSGT00530000063759.a #25	ENSGT00440000033589.c.h #26	ENSGT00950000183170.a #27	ENSGT00940000159096.f #28	ENSGT00940000158301.h #29	ENSGT00390000008576 #31	ENSGT00940000158070	ENSGT00940000160924.b	ENSGT00390000000707.y.b	ENSGT00390000003210.j	ENSGT00940000154415	ENSGT00390000011620.b.c	ENSGT00940000159100.j	ENSGT00940000156594.i	ENSGT00940000157011.h
Asian bonytongue	MODERN SPECIES	22	FHOD1 (ENSSFOG00015000712)	galr1b (ENSSFOG00015000802)	NFATC3 (ENSSFOG00015000830)	ENSSFOG00015000891	AMFR (ENSSFOG00015031164)	SLC6A2 (ENSSFOG00015000989) #8	mmp2 (ENSSFOG00015001040) #10	ENSSFOG00015001083	IRX5 (ENSSFOG00015030982) #12	IRX3 (ENSSFOG00015001125) #14	FTO (ENSSFOG00015001159) #15	rpgrip1l (ENSSFOG00015001280) #16	CHD9 (ENSSFOG00015001327) #19	ENSSFOG00015001548	TOX3 (ENSSFOG00015030392) #21	sall1a (ENSSFOG00015001590) #22	SNX20 (ENSSFOG00015032637) #25	NKD1 (ENSSFOG00015028035) #26	brd7 (ENSSFOG00015001669) #27	adcy7 (ENSSFOG00015001679) #28	tent4b (ENSSFOG00015001704) #29	cnep1r1 (ENSSFOG00015001761) #31	sdr42e1 (ENSSFOG00015030286)	wtip (ENSSFOG00015032562)	gpib (ENSSFOG00015001822)	GARRE1 (ENSSFOG00015001900)	LSM14A (ENSSFOG00015001960)	ENSSFOG00015029112	KCTD15 (ENSSFOG00015002056)	CHST8 (ENSSFOG00015002088)	THSD4 (ENSSFOG00015002128)
P. kingsleyae	MODERN SPECIES	178														TOX3 (ENSPKIG00000005426) #21	ENSPKIG00000005398	sall1a (ENSPKIG00000005383) #22	SNX20 (ENSPKIG00000005366) #25	NKD1 (ENSPKIG00000005346) #26	brd7 (ENSPKIG00000005303) #27	adcy7 (ENSPKIG00000005166) #28	tent4b (ENSPKIG00000005085) #29	cnep1r1 (ENSPKIG00000005054) #31	sdr42e1 (ENSPKIG00000005042)	wtip (ENSPKIG00000005017)	gpib (ENSPKIG00000004922)	GARRE1 (ENSPKIG00000004853)	LSM14A (ENSPKIG00000004788)	ENSPKIG00000004730	KCTD15 (ENSPKIG00000004710)	CHST8 (ENSPKIG00000004680)	THSD4 (ENSPKIG00000004581)
Osteoglossiformes	ANCESTRAL SPECIES	40	ENSGT00940000156482.a	ENSGT00950000182966.B.b	ENSGT00940000156482.b	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960.e #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511.b #10	ENSGT00940000159909.e #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000010125 #17	ENSGT00940000155706.bb #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043.g #21	ENSGT00940000155938.b.a.b #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c.g #26	ENSGT00940000159096.e #28	ENSGT00940000158301.g #29	ENSGT00390000012529 #30	ENSGT00390000009212	ENSGT00390000012054.b	ENSGT00940000160924.a	ENSGT00390000000707.y.a	ENSGT00390000003210.i	ENSGT00940000160407	ENSGT00390000011620.b.d	ENSGT00940000159496	ENSGT00940000159100.i
Asian bonytongue	MODERN SPECIES	20	NFATC3 (ENSSFOG00015010071)	esrp2 (ENSSFOG00015010011)	AMFR (ENSSFOG00015009957)	ENSSFOG00015009949	SLC12A4 (ENSSFOG00015009898)	SLC6A2 (ENSSFOG00015009831) #8	lpcat2 (ENSSFOG00015009706) #9	mmp2 (ENSSFOG00015009635) #10	irx6a (ENSSFOG00015009617) #11	irx5a (ENSSFOG00015009606) #12	irx3b (ENSSFOG00015020465) #14	aktip (ENSSFOG00015020447) #17	ENSSFOG00015020209 #19	RBL2 (ENSSFOG00015020077) #18	TOX3 (ENSSFOG00015020029) #21	sall1a (ENSSFOG00015020020) #22	CYLD (ENSSFOG00015019946) #23	nod2 (ENSSFOG00015019861) #24	nkd1 (ENSSFOG00015029086) #26	adcy7 (ENSSFOG00015019702) #28	tent4b (ENSSFOG00015019677) #29	heatr3 (ENSSFOG00015019635) #30	mphosph6 (ENSSFOG00015027140)	ENSSFOG00015019565	ENSSFOG00015019536	wtip (ENSSFOG00015027010)	gpia (ENSSFOG00015019464)	GARRE1 (ENSSFOG00015019374)	lsm14ab (ENSSFOG00015019348)	ENSSFOG00015019329	KCTD15 (ENSSFOG00015031424)
P. kingsleyae	MODERN SPECIES	42	esrp2 (ENSPKIG00000021343)	si:dkey-148a17.5 (ENSPKIG00000021422)	AMFR (ENSPKIG00000021447)	ENSPKIG00000021490	SLC12A4 (ENSPKIG00000021528)	SLC6A2 (ENSPKIG00000021598) #8	lpcat2 (ENSPKIG00000021649) #9	mmp2 (ENSPKIG00000021674) #10	irx6a (ENSPKIG00000021704) #11	irx5a (ENSPKIG00000021718) #12	irx3a (ENSPKIG00000021731) #14	aktip (ENSPKIG00000021744) #17	CHD9 (ENSPKIG00000021876) #19	RBL2 (ENSPKIG00000022194) #18	TOX3 (ENSPKIG00000022220) #21	sall1a (ENSPKIG00000022251) #22	CYLD (ENSPKIG00000022297) #23	nod2 (ENSPKIG00000022380) #24	nkd1 (ENSPKIG00000000079) #26	adcy7 (ENSPKIG00000000122) #28	tent4b (ENSPKIG00000000206) #29	heatr3 (ENSPKIG00000000235) #30	mphosph6 (ENSPKIG00000000253)	zgc:101040 (ENSPKIG00000000263)	wtip (ENSPKIG00000000290)	ENSPKIG00000000317	gpia (ENSPKIG00000000351)	GARRE1 (ENSPKIG00000000417)	ENSPKIG00000000477	ss18l2 (ENSPKIG00000000487)	lsm14ab (ENSPKIG00000000497)
Clupeocephala	ANCESTRAL SPECIES	16	ENSGT00950000182966.B.a	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b
Otomorpha	ANCESTRAL SPECIES	180	ENSGT00950000182966.B.a	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30
Clupeiformes	ANCESTRAL SPECIES	60	ENSGT00940000157187	ENSGT00950000182966.B.b	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934.c #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00940000157771	ENSGT00940000156205.h	ENSGT00940000156291.e	ENSGT01010000222360.D.b	ENSGT00940000155391.a.b.b	ENSGT00390000001443	ENSGT00550000075025	ENSGT00390000007681.b.a.a	ENSGT00530000063074.b.a.l
Denticle herring	MODERN SPECIES	7	ENSDCDG00000034011	AMFR (ENSDCDG00000033995)	ENSDCDG00000033960	SLC12A4 (ENSDCDG00000032025)	SLC6A2 (ENSDCDG00000031681) #8	lpcat2 (ENSDCDG00000031473) #9	mmp2 (ENSDCDG00000031411) #10	ENSDCDG00000031396	irx6a (ENSDCDG00000031393) #11	irx5a (ENSDCDG00000031390) #12	IRX3 (ENSDCDG00000031386) #14	FTO (ENSDCDG00000031381) #15	aktip (ENSDCDG00000031379) #17	CHD9 (ENSDCDG00000024568) #19	TOX3 (ENSDCDG00000024124) #21	sall1a (ENSDCDG00000024120) #22	CYLD (ENSDCDG00000024116) #23	nod2 (ENSDCDG00000024103) #24	nkd1 (ENSDCDG00000024098) #26	brd7 (ENSDCDG00000024096) #27	adcy7 (ENSDCDG00000020745) #28	tent4b (ENSDCDG00000020649) #29	LRRC28 (ENSDCDG00000020645)	ENSDCDG00000020644	MCTP2 (ENSDCDG00000020302)	ENSDCDG00000020295	RCN1 (ENSDCDG00000035906)	pax6b (ENSDCDG00000035904)	elp4 (ENSDCDG00000035901)	immp1l (ENSDCDG00000035900)	mpped2a (ENSDCDG00000035899)
Atlantic herring	MODERN SPECIES	22	ddx28 (ENSCHAG00000011873)	NFATC3 (ENSCHAG00000011772)	ENSCHAG00000011762	SLC12A4 (ENSCHAG00000008398)	SLC6A2 (ENSCHAG00000004045) #8	lpcat2 (ENSCHAG00000002835) #9	mmp2 (ENSCHAG00000001051) #10	irx6a (ENSCHAG00000000320) #11	irx5a (ENSCHAG00000000301) #12	irx3a (ENSCHAG00000020547) #14	FTO (ENSCHAG00000020531) #15	rpl23a (ENSCHAG00000020512)	aktip (ENSCHAG00000020457) #17	CHD9 (ENSCHAG00000014665) #19	TOX3 (ENSCHAG00000014380) #21	sall1a (ENSCHAG00000014333) #22	CYLD (ENSCHAG00000014127) #23	nod2 (ENSCHAG00000014031) #24	nkd1 (ENSCHAG00000014022) #26	brd7 (ENSCHAG00000013986) #27	adcy7 (ENSCHAG00000013738) #28	tent4b (ENSCHAG00000013423) #29	LRRC28 (ENSCHAG00000013392)	ENSCHAG00000013316	MCTP2 (ENSCHAG00000013087)	RCN1 (ENSCHAG00000013051)	pax6b (ENSCHAG00000011631)	elp4 (ENSCHAG00000011336)	immp1l (ENSCHAG00000011318)	mpped2a (ENSCHAG00000011281)	zdhhc13 (ENSCHAG00000011141)
Otophysi	ANCESTRAL SPECIES	62	ENSGT00940000153875.d.b	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000162646	ENSGT00940000166016	ENSGT00940000159578	ENSGT00390000012054.b	ENSGT00390000008576 #31
Characiphysae	ANCESTRAL SPECIES	27	ENSGT00940000153875.d.b	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00940000162556.C	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000162646	ENSGT00940000166016	ENSGT00940000159578	ENSGT00390000012054.b	ENSGT00390000008576 #31	ENSGT00940000155164.a.b	ENSGT00530000063335.A	ENSGT00530000063675.a
Channel catfish	MODERN SPECIES	19	tppp3 (ENSIPUG00000017183)	ENSIPUG00000017164	slc12a4 (ENSIPUG00000017115)	slc6a2 (ENSIPUG00000017028) #8	lpcat2 (ENSIPUG00000016989) #9	MMP2 (ENSIPUG00000016910) #10	irx6 (ENSIPUG00000016893)	irx5 (ENSIPUG00000016885) #12	irx3a (ENSIPUG00000016857) #14	fto (ENSIPUG00000016830) #15	aktip (ENSIPUG00000016814) #17	ENSIPUG00000016808	CHD9 (ENSIPUG00000016448) #19	ENSIPUG00000016368	tox3 (ENSIPUG00000016308) #21	SALL1 (ENSIPUG00000016265) #22	CYLD (ENSIPUG00000016235) #23	NOD2 (ENSIPUG00000016211) #24	nkd1 (ENSIPUG00000016191) #26	Brd7 (ENSIPUG00000016097) #27	adcy7 (ENSIPUG00000016014) #28	tent4b (ENSIPUG00000015994) #29	heatr3 (ENSIPUG00000015977) #30	ENSIPUG00000015963	cebpa (ENSIPUG00000015956)	cebpg (ENSIPUG00000015948)	abcc12 (ENSIPUG00000015913)	ENSIPUG00000015905	ary1 (ENSIPUG00000015880)	ENSIPUG00000015872	ENSIPUG00000015867
Characiphysae_b	ANCESTRAL SPECIES	28	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000153216.a.a.c.a	ENSGT00940000153216.a.a.c.b.m.a	ENSGT00940000159286.b	ENSGT00940000153216.a.a.c.b.m.b	ENSGT00940000154258.b	ENSGT00390000002200.a.a	ENSGT00940000159716	ENSGT00940000159191	ENSGT00940000153875.d.b	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000162556.C	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000162646	ENSGT00940000166016	ENSGT00940000159578	ENSGT00390000012054.b	ENSGT00390000008576 #31	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A
Characoidei	ANCESTRAL SPECIES	24	ENSGT00940000156131.a.b	ENSGT00940000161738	ENSGT01050000244841.A.b.a.b.a.b	ENSGT00940000153216.a.a.c.a	ENSGT00940000153216.a.a.c.b.m.b	ENSGT00940000154258.b	ENSGT00390000002200.a.a	ENSGT00940000159716	ENSGT00940000159191	ENSGT00940000153875.d.b	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000162556.C	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000162646	ENSGT00940000166016	ENSGT00940000159578	ENSGT00390000012054.b	ENSGT00390000008576 #31	ENSGT00390000012336	ENSGT00940000155164.a.b	ENSGT00530000063335.A
Red-bellied piranha	MODERN SPECIES	26	PLCD3 (ENSPNAG00000025090)	nmt1b (ENSPNAG00000024848)	ENSPNAG00000024791	ENSPNAG00000024642	ENSPNAG00000024630	znf281b (ENSPNAG00000024593)	MPP3 (ENSPNAG00000024558)	irx5a (ENSPNAG00000024353) #12	irx3a (ENSPNAG00000024310) #14	FTO (ENSPNAG00000024295) #15	aktip (ENSPNAG00000005089) #17	CHD9 (ENSPNAG00000024141) #19	ENSPNAG00000023690	ENSPNAG00000023679	TOX3 (ENSPNAG00000023668) #21	sall1a (ENSPNAG00000023644) #22	CYLD (ENSPNAG00000023617) #23	nod2 (ENSPNAG00000023500) #24	nkd1 (ENSPNAG00000023417) #26	brd7 (ENSPNAG00000023396) #27	adcy7 (ENSPNAG00000023307) #28	tent4b (ENSPNAG00000023275) #29	heatr3 (ENSPNAG00000023263) #30	cebpa (ENSPNAG00000023249)	cebpg (ENSPNAG00000023238)	ABCC12 (ENSPNAG00000023220)	ENSPNAG00000023193	ENSPNAG00000023155	ENSPNAG00000023119	cnep1r1 (ENSPNAG00000023092) #31	terb2 (ENSPNAG00000023065)
Mexicana tetra	MODERN SPECIES	31	NFATC3 (ENSAMXG00000005881)	ddx28 (ENSAMXG00000005878)	ENSAMXG00000005876	ctrb.3 (ENSAMXG00000005874)	ENSAMXG00000037991	ENSAMXG00000005856	agrp (ENSAMXG00000043864)	atp6v0d1 (ENSAMXG00000029719)	hsd11b2 (ENSAMXG00000005828)	ENSAMXG00000041808 #15	CLPX (ENSAMXG00000032292)	aktip (ENSAMXG00000005686) #17	CHD9 (ENSAMXG00000005652) #19	ENSAMXG00000005638	ENSAMXG00000038958	sall1a (ENSAMXG00000018599) #22	CYLD (ENSAMXG00000018616) #23	nod2 (ENSAMXG00000018642) #24	brd7 (ENSAMXG00000018848) #27	adcy7 (ENSAMXG00000018869) #28	tent4b (ENSAMXG00000018932) #29	heatr3 (ENSAMXG00000035995) #30	ENSAMXG00000036961	cebpa (ENSAMXG00000026122)	cebpg (ENSAMXG00000026123)	ABCC12 (ENSAMXG00000019048)	ENSAMXG00000034622	ENSAMXG00000034397	ENSAMXG00000026124	cnep1r1 (ENSAMXG00000036618) #31	terb2 (ENSAMXG00000042823)
Electric eel	MODERN SPECIES	432															TOX3 (ENSEEEG00000023201) #21	sall1a (ENSEEEG00000023200) #22	CYLD (ENSEEEG00000023194) #23	nod2 (ENSEEEG00000023185) #24	nkd1 (ENSEEEG00000023180) #26
Cyprinoidei	ANCESTRAL SPECIES	3	ENSGT00940000159191	ENSGT00940000153875.d.b	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a.l #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000162646	ENSGT00940000166016	ENSGT00940000159578	ENSGT00390000012054.b.u	ENSGT00390000008576 #31	ENSGT00390000007074	ENSGT00940000160021	ENSGT00940000156469.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	440										ENSGT00940000159483.a.b.j #12	ENSGT00940000161299.f.g.a #14	ENSGT00390000017730.f #15	ENSGT00390000010125.x #17	ENSGT00940000155706.db #19	ENSGT00940000158043.n #21	ENSGT00940000155938.b.a.c #22	ENSGT00390000018123.a.a.h #23	ENSGT00940000160934.e #24	ENSGT00440000033589.c.f #26	ENSGT00950000183170.a.hb #27	ENSGT00940000159096.g #28	ENSGT00940000158301.j #29	ENSGT00390000012529.k #30	ENSGT00940000162646.n	ENSGT00940000166016.g	ENSGT00940000159578.h	ENSGT00390000007074.fb	ENSGT00940000160021.j	ENSGT00940000156469.b.a	ENSGT00940000153837.a.b.d	ENSGT00940000166619.b
Goldfish	MODERN SPECIES	25	mtch2 (ENSCARG00000011106)	psmc3 (ENSCARG00000011120)	c6ast1 (ENSCARG00000011133)	c6ast3 (ENSCARG00000011145)	c1qtnf4 (ENSCARG00000011163)	ndufs3 (ENSCARG00000011171)	ptpmt1 (ENSCARG00000011202)	ENSCARG00000011211	irx5a (ENSCARG00000011223) #12	ENSCARG00000011236	irx3a (ENSCARG00000011247) #14	FTO (ENSCARG00000011265) #15	aktip (ENSCARG00000011307) #17	CHD9 (ENSCARG00000011643) #19	TOX3 (ENSCARG00000014408) #21	sall1a (ENSCARG00000014466) #22	CYLD (ENSCARG00000014483) #23	nod2 (ENSCARG00000014533) #24	nkd1 (ENSCARG00000014571) #26	brd7 (ENSCARG00000014597) #27	adcy7 (ENSCARG00000014679) #28	tent4b (ENSCARG00000015020) #29	heatr3 (ENSCARG00000015123) #30	cebpa (ENSCARG00000015215)	cebpg (ENSCARG00000015224)	cnep1r1 (ENSCARG00000015246) #31	lrp3 (ENSCARG00000015291)	slc7a10a (ENSCARG00000015334)	rhpn2 (ENSCARG00000015909)	cep89 (ENSCARG00000016672)	zgc:165481 (ENSCARG00000016678)
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT00940000159716.g	ENSGT00940000159191.c	ENSGT00940000153875.d.b.m.a	ENSGT00940000160211.h	ENSGT00940000157672.y	ENSGT00940000158960.g #8	ENSGT01030000234574.A.b.a.l #9	ENSGT00940000158511.c #10	ENSGT00940000159909.g #11	ENSGT00940000159483.a.b.j #12	ENSGT00940000161299.f.g.a #14	ENSGT00390000017730.f #15	ENSGT00390000010125.x #17	ENSGT00940000155706.db #19	ENSGT00940000158043.n #21	ENSGT00940000155938.b.a.c #22	ENSGT00390000018123.a.a.h #23	ENSGT00940000160934.e #24	ENSGT00440000033589.c.f #26	ENSGT00950000183170.a.hb #27	ENSGT00940000159096.g #28	ENSGT00940000158301.j #29	ENSGT00390000012529.k #30	ENSGT00940000162646.n	ENSGT00940000166016.g	ENSGT00940000159578.h	ENSGT00390000008576.y #31	ENSGT00390000007074.fb	ENSGT00940000160021.j	ENSGT00940000156469.b.a	ENSGT00940000153837.a.b.d
Common carp reference	MODERN SPECIES	6	zdhhc1 (ENSCCRG00000024075)	tppp3 (ENSCCRG00000065178)	ENSCCRG00000073578	ENSCCRG00000035057	SLC6A2 (ENSCCRG00000036238) #8	lpcat2 (ENSCCRG00000037728) #9	mmp2 (ENSCCRG00000056273) #10	irx6a (ENSCCRG00000023866) #11	irx5a (ENSCCRG00000027975) #12	ENSCCRG00000082216	irx3a (ENSCCRG00000003900) #14	FTO (ENSCCRG00000068788) #15	aktip (ENSCCRG00000059231) #17	ENSCCRG00000045835 #19	TOX3 (ENSCCRG00000077382) #21	sall1a (ENSCCRG00000040578) #22	CYLD (ENSCCRG00000026863) #23	nod2 (ENSCCRG00000026915) #24	nkd1 (ENSCCRG00000070927) #26	brd7 (ENSCCRG00000018959) #27	adcy7 (ENSCCRG00000052377) #28	tent4b (ENSCCRG00000079370) #29	heatr3 (ENSCCRG00000037900) #30	cebpa (ENSCCRG00000075849)	cebpg (ENSCCRG00000060095)	ENSCCRG00000002441	cnep1r1 (ENSCCRG00000002413) #31	gpatch1 (ENSCCRG00000002361)	lrp3 (ENSCCRG00000000178)	slc7a10a (ENSCCRG00000002342)	rhpn2 (ENSCCRG00000001713)
Golden-line barbel	MODERN SPECIES	393										irx3a (ENSSGRG00000040151) #14	FTO (ENSSGRG00000040153) #15	aktip (ENSSGRG00000040157) #17	CHD9 (ENSSGRG00000040172) #19	ENSSGRG00000040263	TOX3 (ENSSGRG00000040269) #21	sall1a (ENSSGRG00000040272) #22	CYLD (ENSSGRG00000040281) #23	nod2 (ENSSGRG00000040397) #24	nkd1 (ENSSGRG00000040495) #26	ENSSGRG00000040497	ENSSGRG00000040498	ENSSGRG00000040499	ENSSGRG00000040500	zgc:158343 (ENSSGRG00000040523)	tor4ab (ENSSGRG00000040524)	ENSSGRG00000040525	slc2a11b (ENSSGRG00000040528)	gstt2 (ENSSGRG00000040531)	chek2 (ENSSGRG00000040534)	hscb (ENSSGRG00000040537)	ENSSGRG00000040539
Cyprininae	ANCESTRAL SPECIES	26	ENSGT00940000153875.d.b.m.b	ENSGT00940000153875.d.b.n	ENSGT00940000156482.d	ENSGT00940000160211.g	ENSGT00940000157672.z	ENSGT00940000158960.h #8	ENSGT01030000234574.A.b.a.k #9	ENSGT00940000158511.d #10	ENSGT00940000159909.h #11	ENSGT00940000159483.a.b.i #12	ENSGT00940000161299.f.g.b #14	ENSGT00390000017730.e #15	ENSGT00390000010125.w #17	ENSGT00940000155706.eb #19	ENSGT00940000158043.m #21	ENSGT00940000155938.b.a.d #22	ENSGT00390000018123.a.a.g #23	ENSGT00940000160934.f #24	ENSGT00440000033589.c.e #26	ENSGT00950000183170.a.ib #27	ENSGT00940000159096.h #28	ENSGT00940000158301.i #29	ENSGT00390000012529.l #30	ENSGT00940000162646.m	ENSGT00940000166016.h	ENSGT00940000159578.g	ENSGT00390000012054.b.u.a	ENSGT00390000008576.y #31	ENSGT00390000007074.gb	ENSGT00940000160021.i	ENSGT00940000156469.b.b
Cyprininae_a	ANCESTRAL SPECIES	77	ENSGT00940000153875.d.b.m.b	ENSGT00940000153875.d.b.n	ENSGT00940000156482.d	ENSGT00940000160211.g	ENSGT00940000157672.z	ENSGT00940000158960.h #8	ENSGT01030000234574.A.b.a.k #9	ENSGT00940000158511.d #10	ENSGT00940000159909.h #11	ENSGT00940000159483.a.b.i #12	ENSGT00940000161299.f.g.b #14	ENSGT00390000017730.e #15	ENSGT00390000010125.w #17	ENSGT00940000155706.eb #19	ENSGT00940000158043.m #21	ENSGT00940000155938.b.a.d #22	ENSGT00390000018123.a.a.g #23	ENSGT00940000160934.f #24	ENSGT00440000033589.c.e #26	ENSGT00950000183170.a.ib #27	ENSGT00940000159096.h #28	ENSGT00940000158301.i #29	ENSGT00390000012529.l #30	ENSGT00940000162646.m	ENSGT00940000166016.h	ENSGT00940000159578.g	ENSGT00390000012054.b.u.a	ENSGT00390000012054.b.u.b	ENSGT00390000008576.z #31	ENSGT00390000007074.gb	ENSGT00940000160021.i
Common carp reference	MODERN SPECIES		hsd11b2 (ENSCCRG00000025321)	zdhhc1 (ENSCCRG00000030848)	ENSCCRG00000024066	tppp3 (ENSCCRG00000079015)	ENSCCRG00000078897	ENSCCRG00000069676	ENSCCRG00000027367 #8	mmp2 (ENSCCRG00000027488) #10	irx6a (ENSCCRG00000023868) #11	irx5a (ENSCCRG00000082522) #12	irx3a (ENSCCRG00000065743) #14	FTO (ENSCCRG00000081281) #15	aktip (ENSCCRG00000035532) #17	ENSCCRG00000045819 #19	TOX3 (ENSCCRG00000046520) #21	sall1a (ENSCCRG00000030469) #22	CYLD (ENSCCRG00000036474) #23	nod2 (ENSCCRG00000036448) #24	nkd1 (ENSCCRG00000007943) #26	brd7 (ENSCCRG00000042239) #27	adcy7 (ENSCCRG00000058233) #28	tent4b (ENSCCRG00000037923) #29	heatr3 (ENSCCRG00000016505) #30	ENSCCRG00000065043	cebpa (ENSCCRG00000072062)	cebpg (ENSCCRG00000020632)	ENSCCRG00000020556	ENSCCRG00000000353	ENSCCRG00000065497	cnep1r1 (ENSCCRG00000000338) #31	gpatch1 (ENSCCRG00000000249)
Golden-line barbel	MODERN SPECIES	424																sall1a (ENSSGRG00000035291) #22	CYLD (ENSSGRG00000034465) #23	nod2 (ENSSGRG00000034333) #24	nkd1 (ENSSGRG00000034329) #26	brd7 (ENSSGRG00000034325) #27	adcy7 (ENSSGRG00000034120) #28	tent4b (ENSSGRG00000034116) #29	heatr3 (ENSSGRG00000034110) #30	cebpg (ENSSGRG00000034105)	ABCC12 (ENSSGRG00000033885)	ENSSGRG00000033876	cnep1r1 (ENSSGRG00000033846) #31	ENSSGRG00000033842	lrp3 (ENSSGRG00000033835)	slc7a10a (ENSSGRG00000033724)	rhpn2 (ENSSGRG00000033491)
Goldfish	MODERN SPECIES	47	hsd11b2 (ENSCARG00000023913)	zdhhc1 (ENSCARG00000023924)	tppp3 (ENSCARG00000023936)	DPEP2 (ENSCARG00000023951)	SLC12A4 (ENSCARG00000024115)	SLC6A2 (ENSCARG00000029063) #8	lpcat2 (ENSCARG00000029333) #9	mmp2 (ENSCARG00000029559) #10	irx6a (ENSCARG00000030742) #11	irx5a (ENSCARG00000030754) #12	irx3a (ENSCARG00000030763) #14	FTO (ENSCARG00000030798) #15	aktip (ENSCARG00000030823) #17	ENSCARG00000031394 #19	TOX3 (ENSCARG00000042804) #21	sall1a (ENSCARG00000042888) #22	CYLD (ENSCARG00000042960) #23	nod2 (ENSCARG00000043113) #24	nkd1 (ENSCARG00000043316) #26	ENSCARG00000043422	brd7 (ENSCARG00000043436) #27	adcy7 (ENSCARG00000043532) #28	tent4b (ENSCARG00000044174) #29	heatr3 (ENSCARG00000044522) #30	cebpa (ENSCARG00000045892)	cebpg (ENSCARG00000045905)	ABCC12 (ENSCARG00000045992)	ENSCARG00000046496	ENSCARG00000046516	ENSCARG00000046524	cnep1r1 (ENSCARG00000046550) #31
Zebrafish	MODERN SPECIES	22	tppp3 (ENSDARG00000030463)	AMFR (ENSDARG00000105578)	ENSDARG00000079216	SLC12A4 (ENSDARG00000014378)	SLC6A2 (ENSDARG00000016141) #8	lpcat2 (ENSDARG00000053010) #9	mmp2 (ENSDARG00000017676) #10	irx6a (ENSDARG00000034420) #11	irx5a (ENSDARG00000034043) #12	irx3a (ENSDARG00000101076) #14	ENSDARG00000109891	FTO (ENSDARG00000044216) #15	aktip (ENSDARG00000026862) #17	CHD9 (ENSDARG00000074498) #19	TOX3 (ENSDARG00000073957) #21	sall1a (ENSDARG00000074319) #22	CYLD (ENSDARG00000060058) #23	nod2 (ENSDARG00000010756) #24	nkd1 (ENSDARG00000020053) #26	brd7 (ENSDARG00000008380) #27	adcy7 (ENSDARG00000060070) #28	tent4b (ENSDARG00000060071) #29	heatr3 (ENSDARG00000036076) #30	cebpa (ENSDARG00000036074)	cebpg (ENSDARG00000036073)	ABCC12 (ENSDARG00000013050)	ENSDARG00000036066	cnep1r1 (ENSDARG00000036064) #31	gpatch1 (ENSDARG00000033418)	lrp3 (ENSDARG00000008485)	slc7a10a (ENSDARG00000008100)
Euteleosteomorpha	ANCESTRAL SPECIES	3	ENSGT00950000182966.B.a	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00940000156482.d	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000178947	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00600000085600.k	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301.k #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909.m #11	ENSGT00940000159909.n.a.a #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730.h #15	ENSGT00390000010125.y #17	ENSGT00940000178947	ENSGT00390000017730.g.a #15	ENSGT00390000010125.z #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b.y #18	ENSGT00940000158043.j #21	ENSGT00940000159497.d	ENSGT00940000155938.b.a.e #22	ENSGT00390000018123.a.a.k #23	ENSGT00940000160934 #24	ENSGT00600000085600.k.a.a	ENSGT00440000033589.c.d.a.b #26
Huchen	MODERN SPECIES	3245																sall1a (ENSHHUG00000026842) #22
Salmoninae_a	ANCESTRAL SPECIES	108											ENSGT00390000017730.g.b #15	ENSGT00390000010125.y #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b.y #18	ENSGT00940000158043.j #21	ENSGT00940000155938.b.a.e #22	ENSGT00390000018123.a.a.k #23	ENSGT00940000160934 #24	ENSGT00600000085600.k.b.b	ENSGT00600000085600.k.a.a	ENSGT00440000033589.c.d.b #26	ENSGT00950000183170.a.lb #27	ENSGT00940000159096.l.a #28	ENSGT00940000158301.k.a.b.b #29	ENSGT00390000012529.p #30	ENSGT00390000008576.x #31	ENSGT00390000012054.b.l	ENSGT00940000158070.d	ENSGT00940000160924.g	ENSGT00390000000707.y.b.d	ENSGT00390000003210.h
Oncorhynchus	ANCESTRAL SPECIES	96							ENSGT00940000159483.a.b.e.a #12	ENSGT00940000161299.f.o #14	ENSGT00390000017730.h.a #15	ENSGT00390000010125.y #17	ENSGT00940000155706.jb.a #19	ENSGT00950000183202.a.b.y.e.a.a #18	ENSGT00940000158043.i #21	ENSGT00950000183202.a.b.y.e.a.b #18	ENSGT00940000158043.j #21	ENSGT00940000155938.b.a.e #22	ENSGT00390000018123.a.a.k #23	ENSGT00940000160934 #24	ENSGT00600000085600.k.b.b	ENSGT00440000033589.c.d.b #26	ENSGT00950000183170.a.lb #27	ENSGT00940000159096.l.a #28	ENSGT00940000158301.k.a.b.b #29	ENSGT00390000012529.p #30	ENSGT00390000008576.x #31	ENSGT00390000012054.b.l	ENSGT00940000158070.d	ENSGT00940000160924.g	ENSGT00390000000707.y.b.d	ENSGT00390000003210.h	ENSGT00940000154415.lb.a.c
Oncorhynchus_a	ANCESTRAL SPECIES	145								ENSGT00940000159483.a.b.e.a #12	ENSGT00940000161299.f.o #14	ENSGT00390000017730.h.a #15	ENSGT00390000010125.y #17	ENSGT00940000155706.jb.a #19	ENSGT00950000183202.a.b.y.e.a.a #18	ENSGT00950000183202.a.b.y.e.a.b #18	ENSGT00940000158043.j #21	ENSGT00940000155938.b.a.e #22	ENSGT00390000018123.a.a.k #23	ENSGT00940000160934 #24	ENSGT00600000085600.k.b.b	ENSGT00440000033589.c.d.a.b #26	ENSGT00950000183170.a.lb #27	ENSGT00940000159096.l.a #28	ENSGT00940000158301.k.a.b.b #29	ENSGT00390000012529.p #30	ENSGT00390000008576.x #31	ENSGT00390000012054.b.l	ENSGT00940000158070.d	ENSGT00940000160924.g	ENSGT00390000000707.y.b.d	ENSGT00390000003210.h	ENSGT00940000154415.lb.a.c
Coho salmon	MODERN SPECIES	22	SLC6A2 (ENSOKIG00005003663) #8	lpcat2 (ENSOKIG00005003420) #9	mmp2 (ENSOKIG00005002037) #10	irx6a (ENSOKIG00005001736) #11	ENSOKIG00005001732	irx5a (ENSOKIG00005001726) #12	ENSOKIG00005001721	ENSOKIG00005001716	irx3a (ENSOKIG00005001708) #14	ENSOKIG00005001706	FTO (ENSOKIG00005001700) #15	aktip (ENSOKIG00005001691) #17	CHD9 (ENSOKIG00005000740) #19	ENSOKIG00005000108 #18	TOX3 (ENSOKIG00005031080) #21	sall1a (ENSOKIG00005031002) #22	CYLD (ENSOKIG00005027605) #23	nod2 (ENSOKIG00005027272) #24	ENSOKIG00005027171	nkd1 (ENSOKIG00005027105) #26	brd7 (ENSOKIG00005027019) #27	adcy7 (ENSOKIG00005026527) #28	tent4b (ENSOKIG00005026275) #29	heatr3 (ENSOKIG00005026183) #30	cnep1r1 (ENSOKIG00005025982) #31	ENSOKIG00005025972	sdr42e1 (ENSOKIG00005025953)	wtip (ENSOKIG00005025898)	gpib (ENSOKIG00005024131)	GARRE1 (ENSOKIG00005023767)	lsm14ab (ENSOKIG00005023723)
Chinook salmon	MODERN SPECIES	28	ENSOTSG00005017432	ENSOTSG00005017431	tln2a (ENSOTSG00005017430)	FBXO22 (ENSOTSG00005017428)	ENSOTSG00005017422	ENSOTSG00005017385	tln2a (ENSOTSG00005016368)	ddx28 (ENSOTSG00005016328)	NFATC3 (ENSOTSG00005016327)	esrp2 (ENSOTSG00005016326)	AMFR (ENSOTSG00005015582)	SLC12A4 (ENSOTSG00005015365)	ENSOTSG00005015356	ENSOTSG00005015351 #18	ENSOTSG00005015349	sall1a (ENSOTSG00005015346) #22	ACVR1B (ENSOTSG00005015342)	nkd1 (ENSOTSG00005015340) #26	brd7 (ENSOTSG00005015339) #27	adcy7 (ENSOTSG00005015157) #28	tent4b (ENSOTSG00005015148) #29	heatr3 (ENSOTSG00005014936) #30	cnep1r1 (ENSOTSG00005014887) #31	zgc:101040 (ENSOTSG00005014885)	sdr42e1 (ENSOTSG00005014884)	wtip (ENSOTSG00005014883)	gpib (ENSOTSG00005014822)	GARRE1 (ENSOTSG00005014577)	lsm14ab (ENSOTSG00005014575)	brd7 (ENSOTSG00005014571) #27	nkd1 (ENSOTSG00005014565) #26
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000044980	ENSOMYG00000074427	ENSOMYG00000044144 #8	lpcat2 (ENSOMYG00000043966) #9	mmp2 (ENSOMYG00000043784) #10	irx6a (ENSOMYG00000043718) #11	irx5a (ENSOMYG00000043710) #12	irx3a (ENSOMYG00000043701) #14	FTO (ENSOMYG00000074781) #15	aktip (ENSOMYG00000043603) #17	ENSOMYG00000062716	ENSOMYG00000042403 #19	ENSOMYG00000042107 #18	TOX3 (ENSOMYG00000042084) #21	ENSOMYG00000073312	sall1a (ENSOMYG00000042056) #22	CYLD (ENSOMYG00000040439) #23	nod2 (ENSOMYG00000040062) #24	ENSOMYG00000040033	nkd1 (ENSOMYG00000040009) #26	brd7 (ENSOMYG00000039999) #27	adcy7 (ENSOMYG00000039924) #28	tent4b (ENSOMYG00000039746) #29	ENSOMYG00000070463	heatr3 (ENSOMYG00000038743) #30	CNEP1R1 (ENSOMYG00000038555) #31	ENSOMYG00000038543	sdr42e1 (ENSOMYG00000038513)	ENSOMYG00000052145	wtip (ENSOMYG00000038482)	gpib (ENSOMYG00000033529)
Salmo	ANCESTRAL SPECIES	27	ENSGT00940000160211.n	ENSGT00940000157672.n	ENSGT00940000158960.l.c #8	ENSGT01030000234574.A.b.a.f #9	ENSGT00940000158511.g #10	ENSGT00940000159909.n.a.a #11	ENSGT00940000159483.a.b.e.a.a #12	ENSGT00940000159909.n.a.b #11	ENSGT00940000158511.h #10	ENSGT00940000161299.f.r #14	ENSGT00390000017730.g.b #15	ENSGT00390000010125.y #17	ENSGT00940000155706.hb #19	ENSGT00950000183202.a.b.y.c #18	ENSGT00940000158043.j #21	ENSGT00940000155938.b.a.e #22	ENSGT00390000018123.a.a.k #23	ENSGT00940000160934.g #24	ENSGT00600000085600.k.b.b	ENSGT00600000085600.k.a.a	ENSGT00440000033589.c.d.b #26	ENSGT00950000183170.a.lb #27	ENSGT00940000159096.k.d #28	ENSGT00940000159096.l.b #28	ENSGT00940000158301.k.a.b.b #29	ENSGT00390000012529.o.b #30	ENSGT00390000008576.x #31	ENSGT00390000012054.b.l	ENSGT00940000158070.d	ENSGT00940000160924.g	ENSGT00390000000707.y.b.d
River trout	MODERN SPECIES	21	ENSSTUG00000048231	SLC12A4 (ENSSTUG00000048295)	SLC6A2 (ENSSTUG00000049161) #8	lpcat2 (ENSSTUG00000049653) #9	mmp2 (ENSSTUG00000049696) #10	irx6a (ENSSTUG00000049800) #11	ENSSTUG00000049802	ENSSTUG00000049805	ENSSTUG00000049807	irx3a (ENSSTUG00000049808) #14	ENSSTUG00000003320 #15	aktip (ENSSTUG00000004169) #17	ENSSTUG00000004537 #19	ENSSTUG00000010997 #18	TOX3 (ENSSTUG00000011023) #21	sall1a (ENSSTUG00000011042) #22	ENSSTUG00000011074 #23	nod2 (ENSSTUG00000011203) #24	ENSSTUG00000011376	nkd1 (ENSSTUG00000011467) #26	brd7 (ENSSTUG00000011513) #27	adcy7 (ENSSTUG00000011554) #28	tent4b (ENSSTUG00000011736) #29	heatr3 (ENSSTUG00000011779) #30	cnep1r1 (ENSSTUG00000011844) #31	ENSSTUG00000011888	sdr42e1 (ENSSTUG00000011892)	wtip (ENSSTUG00000011912)	gpib (ENSSTUG00000011999)	GARRE1 (ENSSTUG00000012499)	ss18l2 (ENSSTUG00000012649)
Atlantic salmon	MODERN SPECIES	18	ENSSSAG00000073000	ENSSSAG00000119603	ENSSSAG00000049988 #8	pcat2 (ENSSSAG00000068255) #9	mmp2 (ENSSSAG00000068444) #10	irx6a (ENSSSAG00000115413) #11	irx5a (ENSSSAG00000088044) #12	irx3a (ENSSSAG00000068682) #14	FTO (ENSSSAG00000053871) #15	aktip (ENSSSAG00000053889) #17	ENSSSAG00000054403 #19	ENSSSAG00000069786 #18	TOX3 (ENSSSAG00000069794) #21	ENSSSAG00000004873	ENSSSAG00000090184	sall1a (ENSSSAG00000069795) #22	ENSSSAG00000100374	CYLD (ENSSSAG00000076053) #23	ENSSSAG00000093697	nod2 (ENSSSAG00000076025) #24	m4a4a (ENSSSAG00000044560)	ENSSSAG00000076014	ENSSSAG00000102293	nkd1 (ENSSSAG00000076011) #26	ENSSSAG00000100978	ENSSSAG00000094857	ENSSSAG00000044538	brd7 (ENSSSAG00000076002) #27	ENSSSAG00000117108	adcy7 (ENSSSAG00000075964) #28	tent4b (ENSSSAG00000075793) #29
Salmoninae	ANCESTRAL SPECIES	191															ENSGT00940000158043.i #21	ENSGT00940000155938.b.a.f #22	ENSGT00390000018123.a.a.l #23	ENSGT00440000033589.c.d.a.a #26	ENSGT00950000183170.a.mb #27	ENSGT00940000159096.k #28	ENSGT00940000158301.k.a.a #29	ENSGT00940000158301.k.a.b.a #29	ENSGT00390000012529.o.a #30	ENSGT00390000008576.w #31	ENSGT00390000012054.b.k	ENSGT00600000085600.k.b	ENSGT00440000033589.c.d.b #26	ENSGT00950000183170.a.lb #27	ENSGT00940000159096.l.a #28	ENSGT00940000158301.k.a.b.b #29	ENSGT00390000012529.p #30
Huchen	MODERN SPECIES	519														TOX3 (ENSHHUG00000027789) #21	ENSHHUG00000027793	sall1a (ENSHHUG00000027823) #22	CYLD (ENSHHUG00000027831) #23	ENSHHUG00000028126	ENSHHUG00000028135	ENSHHUG00000028144	nkd1 (ENSHHUG00000028151) #26	ENSHHUG00000028164	ENSHHUG00000028170
Salmoninae_a	ANCESTRAL SPECIES	174															ENSGT00940000158043.i #21	ENSGT00940000155938.b.a.f #22	ENSGT00390000018123.a.a.l #23	ENSGT00600000085600.k.b.a	ENSGT00440000033589.c.c #26	ENSGT00950000183170.a.mb #27	ENSGT00940000159096.k #28	ENSGT00940000158301.k.a.a #29	ENSGT00940000158301.k.a.b.a #29	ENSGT00390000012529.o.a #30	ENSGT00390000008576.w #31	ENSGT00390000012054.b.k	ENSGT00940000158070.c	ENSGT00940000160924.h
Salmo	ANCESTRAL SPECIES	158									ENSGT00940000159483.a.b.e.a.b #12	ENSGT00940000161299.f.q #14	ENSGT00390000017730.g.a.a #15	ENSGT00390000010125.z #17	ENSGT00940000155706.ib #19	ENSGT00950000183202.a.b.y.d #18	ENSGT00940000158043.i #21	ENSGT00940000155938.b.a.f #22	ENSGT00390000018123.a.a.l #23	ENSGT00940000160934.h #24	ENSGT00600000085600.k.b.a	ENSGT00440000033589.c.c #26	ENSGT00950000183170.a.mb #27	ENSGT00940000159096.k.c #28	ENSGT00940000158301.k.a.a #29	ENSGT00940000158301.k.a.b.a #29	ENSGT00390000012529.o.a #30	ENSGT00390000008576.w.a #31	ENSGT00390000012054.b.k	ENSGT00940000158070.c	ENSGT00940000160924.h
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000056767	ENSSSAG00000115617	ENSSSAG00000066947 #8	lpcat2 (ENSSSAG00000049933) #9	mmp2 (ENSSSAG00000047363) #10	irx6a (ENSSSAG00000073017) #11	ENSSSAG00000084600	irx5a (ENSSSAG00000068689) #12	irx3a (ENSSSAG00000075896) #14	FTO (ENSSSAG00000105621) #15	aktip (ENSSSAG00000044860) #17	ENSSSAG00000114939 #19	ENSSSAG00000115079 #18	ENSSSAG00000093261	TOX3 (ENSSSAG00000044679) #21	sall1a (ENSSSAG00000051548) #22	CYLD (ENSSSAG00000038468) #23	nod2 (ENSSSAG00000043772) #24	ENSSSAG00000115814	ENSSSAG00000090673	nkd1 (ENSSSAG00000119359) #26	brd7 (ENSSSAG00000074265) #27	adcy7 (ENSSSAG00000073930) #28	tent4b (ENSSSAG00000073902) #29	heatr3 (ENSSSAG00000073878) #30	CNEP1R1 (ENSSSAG00000088240) #31	ENSSSAG00000073870	sdr42e1 (ENSSSAG00000056349)	wtip (ENSSSAG00000120503)	ENSSSAG00000113984	ENSSSAG00000092160
River trout	MODERN SPECIES	3	mmp2 (ENSSTUG00000040360) #10	irx6a (ENSSTUG00000040313) #11	irx5a (ENSSTUG00000040302) #12	irx5a (ENSSTUG00000040286) #12	ENSSTUG00000040281	irx3a (ENSSTUG00000040263) #14	FTO (ENSSTUG00000040228) #15	aktip (ENSSTUG00000040207) #17	ENSSTUG00000040202	ENSSTUG00000040190	CHD9 (ENSSTUG00000033520) #19	ENSSTUG00000033314 #18	ENSSTUG00000033298	ENSSTUG00000033291	TOX3 (ENSSTUG00000033188) #21	sall1a (ENSSTUG00000033154) #22	CYLD (ENSSTUG00000030594) #23	ENSSTUG00000030516	ENSSTUG00000030509	nkd1 (ENSSTUG00000030492) #26	brd7 (ENSSTUG00000030480) #27	adcy7 (ENSSTUG00000029762) #28	tent4b (ENSSTUG00000029441) #29	heatr3 (ENSSTUG00000029289) #30	cnep1r1 (ENSSTUG00000029243) #31	ENSSTUG00000029239	sdr42e1 (ENSSTUG00000029228)	wtip (ENSSTUG00000029159)	gpib (ENSSTUG00000028424)	GARRE1 (ENSSTUG00000028148)	ss18l2 (ENSSTUG00000028083)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00950000182966.B.a.a	ENSGT00940000156482.d.e	ENSGT00940000160211.l	ENSGT00940000157672.l	ENSGT00940000158960.l.f #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909.m #11	ENSGT00940000158596.b.a	ENSGT00940000159483.a.b.e.b #12	ENSGT00940000161299.f.p #14	ENSGT00390000017730.h.b #15	ENSGT00390000010125.z #17	ENSGT00940000178947	ENSGT00950000183135.A.b.r.f	ENSGT00940000155938.b.a.f #22	ENSGT00390000018123.a.a.l #23	ENSGT00600000085600.k.b.a	ENSGT00440000033589.c.d.a.b #26	ENSGT00440000033589.c.d.a.a #26	ENSGT00950000183170.a.mb #27	ENSGT00940000159096.k #28	ENSGT00940000158301.k.a.a #29	ENSGT00390000012529.o.a #30	ENSGT00390000008576.w #31	ENSGT00390000012054.b.k	ENSGT00940000158070.c	ENSGT00940000160924.h	ENSGT00390000000707.y.b.c	ENSGT00390000003210.g	ENSGT00940000160407
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00950000182966.B.b.b	ENSGT00940000156482.d.f	ENSGT00940000160211.k	ENSGT00940000157672.l	ENSGT00940000158960.k #8	ENSGT01030000234574.A.b.a.i #9	ENSGT01030000234574.A.b.a.j #9	ENSGT00940000158511 #10	ENSGT00940000159909.n.b #11	ENSGT00940000159483.a.b.e.b #12	ENSGT00940000161299.f.p #14	ENSGT00390000017730.h.b #15	ENSGT00390000010125.z #17	ENSGT00940000178947	ENSGT00950000183135.A.b.r.f	ENSGT00940000155938.b.a.f #22	ENSGT00390000018123.a.a.l #23	ENSGT00600000085600.k.b.a	ENSGT00440000033589.c.d.a.a #26	ENSGT00950000183170.a.mb #27	ENSGT00940000158301.k.a.a #29	ENSGT00390000012529.o.a #30	ENSGT00390000008576.w #31	ENSGT00390000012054.b.k	ENSGT00940000158070.c	ENSGT00940000160924.h	ENSGT00390000000707.y.b.c	ENSGT00390000003210.g	ENSGT00940000160407	ENSGT00940000154415.lb.a.d	ENSGT00390000011620.b.f.f
Coho salmon	MODERN SPECIES	28	ENSOKIG00005031603	SLC12A4 (ENSOKIG00005031102)	SLC6A2 (ENSOKIG00005028618) #8	lpcat2 (ENSOKIG00005028073) #9	mmp2 (ENSOKIG00005026080) #10	irx6a (ENSOKIG00005025962) #11	ENSOKIG00005025950	irx5a (ENSOKIG00005025939) #12	irx3a (ENSOKIG00005025910) #14	FTO (ENSOKIG00005025888) #15	aktip (ENSOKIG00005025791) #17	ENSOKIG00005020212 #19	ENSOKIG00005019899 #18	ENSOKIG00005019828	ENSOKIG00005019805	sall1a (ENSOKIG00005019797) #22	ENSOKIG00005019789	CYLD (ENSOKIG00005018538) #23	ENSOKIG00005018440	ENSOKIG00005018428	nkd1 (ENSOKIG00005018410) #26	brd7 (ENSOKIG00005018363) #27	adcy7 (ENSOKIG00005018240) #28	tent4b (ENSOKIG00005018153) #29	heatr3 (ENSOKIG00005018102) #30	CNEP1R1 (ENSOKIG00005018027) #31	ENSOKIG00005018008	sdr42e1 (ENSOKIG00005018003)	wtip (ENSOKIG00005017960)	gpib (ENSOKIG00005017356)	ENSOKIG00005017323
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005021952	CTXN2 (ENSOTSG00005021951)	ENSOTSG00005021948	ENSOTSG00005021943	fgf7 (ENSOTSG00005021939)	ENSOTSG00005021938	dtwd1 (ENSOTSG00005021937)	gli1 (ENSOTSG00005021454)	lpcat2 (ENSOTSG00005021076) #9	mmp2 (ENSOTSG00005017318) #10	lpcat2 (ENSOTSG00005017132) #9	IRX5 (ENSOTSG00005017129) #12	irx5a (ENSOTSG00005017128) #12	ENSOTSG00005017106	ENSOTSG00005017104	sall1a (ENSOTSG00005017101) #22	CYLD (ENSOTSG00005015232) #23	ENSOTSG00005015225	ENSOTSG00005015223	ENSOTSG00005015219	ENSOTSG00005015217	TOX3 (ENSOTSG00005015216) #21	pepd (ENSOTSG00005013979)	THSD4 (ENSOTSG00005013971)	ENSOTSG00005013968	larp6a (ENSOTSG00005013967)	tm2d3 (ENSOTSG00005013966)	ENSOTSG00005007838	ulk3 (ENSOTSG00005007732)	ENSOTSG00005007730	cplx3a (ENSOTSG00005007729)
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000021656 #8	lpcat2 (ENSOMYG00000021001) #9	ENSOMYG00000067036	mmp2 (ENSOMYG00000020411) #10	ENSOMYG00000020273	irx5a (ENSOMYG00000020260) #12	irx3a (ENSOMYG00000020244) #14	ENSOMYG00000020222 #15	ENSOMYG00000076169	aktip (ENSOMYG00000020187) #17	ENSOMYG00000068495	ENSOMYG00000016984 #19	ENSOMYG00000038731 #18	TOX3 (ENSOMYG00000045986) #21	ENSOMYG00000045978	sall1a (ENSOMYG00000045975) #22	ENSOMYG00000069981	ENSOMYG00000058344	CYLD (ENSOMYG00000045433) #23	ENSOMYG00000045354	nkd1 (ENSOMYG00000045343) #26	brd7 (ENSOMYG00000045334) #27	ENSOMYG00000066122	adcy7 (ENSOMYG00000045295) #28	tent4b (ENSOMYG00000045259) #29	heatr3 (ENSOMYG00000045138) #30	CNEP1R1 (ENSOMYG00000045101) #31	ENSOMYG00000074522	sdr42e1 (ENSOMYG00000045098)	ENSOMYG00000053452	wtip (ENSOMYG00000045094)
Northern pike	MODERN SPECIES	1	ENSELUG00000005465	SLC12A4 (ENSELUG00000005611)	SLC6A2 (ENSELUG00000005686) #8	lpcat2 (ENSELUG00000000170) #9	mmp2 (ENSELUG00000000174) #10	ENSELUG00000025925	ENSELUG00000028877	irx6a (ENSELUG00000005754) #11	irx5a (ENSELUG00000005786) #12	irx3a (ENSELUG00000005810) #14	FTO (ENSELUG00000005837) #15	aktip (ENSELUG00000005867) #17	CHD9 (ENSELUG00000006031) #19	ENSELUG00000006100 #18	TOX3 (ENSELUG00000006127) #21	sall1a (ENSELUG00000006159) #22	CYLD (ENSELUG00000006267) #23	nod2 (ENSELUG00000006299) #24	ENSELUG00000006328	nkd1 (ENSELUG00000006406) #26	brd7 (ENSELUG00000006474) #27	adcy7 (ENSELUG00000006551) #28	tent4b (ENSELUG00000006619) #29	heatr3 (ENSELUG00000006685) #30	cnep1r1 (ENSELUG00000006740) #31	zgc:101040 (ENSELUG00000006762)	sdr42e1 (ENSELUG00000006770)	wtip (ENSELUG00000006795)	gpib (ENSELUG00000006857)	GARRE1 (ENSELUG00000000230)	ss18l2 (ENSELUG00000007027)
Acanthomorphata	ANCESTRAL SPECIES	64	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000154415.lb.a	ENSGT00390000011620.b.f
Euacanthomorphacea	ANCESTRAL SPECIES	29	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Percomorphaceae	ANCESTRAL SPECIES	27	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Tetraodontidae	ANCESTRAL SPECIES	4	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960.i #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000008576 #31
Fugu	MODERN SPECIES	4	PARP6 (ENSTRUG00000012505)	ENSTRUG00000012391	rpp25b (ENSTRUG00000024908)	ENSTRUG00000012222	SLC12A4 (ENSTRUG00000011258)	SLC6A2 (ENSTRUG00000010868) #8	lpcat2 (ENSTRUG00000010732) #9	mmp2 (ENSTRUG00000010165) #10	irx6a (ENSTRUG00000010131) #11	irx5a (ENSTRUG00000010063) #12	irx3a (ENSTRUG00000019772) #14	FTO (ENSTRUG00000020259) #15	aktip (ENSTRUG00000009719) #17	CHD9 (ENSTRUG00000009125) #19	TOX3 (ENSTRUG00000024558) #21	sall1a (ENSTRUG00000008950) #22	CYLD (ENSTRUG00000008733) #23	nod2 (ENSTRUG00000008459) #24	nkd1 (ENSTRUG00000008266) #26	brd7 (ENSTRUG00000008098) #27	adcy7 (ENSTRUG00000007114) #28	tent4b (ENSTRUG00000006962) #29	cnep1r1 (ENSTRUG00000033421) #31	ENSTRUG00000023296	KIF26B (ENSTRUG00000005556)	ENSTRUG00000032036	ENSTRUG00000005280	ENSTRUG00000004994	KRTCAP3 (ENSTRUG00000004828)	NRBP1 (ENSTRUG00000004084)	KCTD3 (ENSTRUG00000028805)
Tetraodon	MODERN SPECIES	26	prune (ENSTNIG00000002937)	bnipl (ENSTNIG00000001858)	ENSTNIG00000002936	ENSTNIG00000002935	ENSTNIG00000004521	iqgap3 (ENSTNIG00000006098)	decr1 (ENSTNIG00000006096)	pmvk (ENSTNIG00000006095)	ENSTNIG00000006094	ARHGEF2 (ENSTNIG00000006093)	ENSTNIG00000006092	ENSTNIG00000006091	ENSTNIG00000006090	ENSTNIG00000002643	ENSTNIG00000000797	sall1a (ENSTNIG00000004257) #22	ENSTNIG00000004256 #23	ENSTNIG00000004815	rnf7 (ENSTNIG00000005982)	grk7b (ENSTNIG00000019847)	baz1b (ENSTNIG00000014185)	bcl7bb (ENSTNIG00000000582)	hip1 (ENSTNIG00000014184)	ENSTNIG00000014183	pak1 (ENSTNIG00000003751)	NLRX1 (ENSTNIG00000006412)	efhd1 (ENSTNIG00000006411)	kcnj13 (ENSTNIG00000006410)	ENSTNIG00000018619	zgc:109889 (ENSTNIG00000018620)	htr2cl1 (ENSTNIG00000018621)
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Ballan wrasse	MODERN SPECIES		CELF6 (ENSLBEG00000011338)	rpp25b (ENSLBEG00000011461)	ENSLBEG00000011494	SLC12A4 (ENSLBEG00000011557)	SLC6A2 (ENSLBEG00000011667) #8	lpcat2 (ENSLBEG00000011739) #9	mmp2 (ENSLBEG00000011830) #10	irx6a (ENSLBEG00000011872) #11	irx5a (ENSLBEG00000011915) #12	ENSLBEG00000011938	irx3a (ENSLBEG00000011952) #14	FTO (ENSLBEG00000011970) #15	aktip (ENSLBEG00000011993) #17	CHD9 (ENSLBEG00000012077) #19	TOX3 (ENSLBEG00000012177) #21	sall1a (ENSLBEG00000012207) #22
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Perciformes	ANCESTRAL SPECIES	15	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Cottioidei	ANCESTRAL SPECIES	13	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000003488.a.a	ENSGT00840000129915.b	ENSGT00940000158020.d	ENSGT00390000000096.b.a	ENSGT00940000159303	ENSGT00940000158347.z	ENSGT01030000234532.A.b
Lumpfish	MODERN SPECIES	18	ENSCLMG00005020668	ENSCLMG00005002831	rpp25b (ENSCLMG00005002876)	ENSCLMG00005002913	SLC12A4 (ENSCLMG00005003055)	SLC6A2 (ENSCLMG00005003693) #8	lpcat2 (ENSCLMG00005008693) #9	mmp2 (ENSCLMG00005008734) #10	irx6a (ENSCLMG00005008788) #11	irx5a (ENSCLMG00005008791) #12	irx3a (ENSCLMG00005008792) #14	FTO (ENSCLMG00005008793) #15	aktip (ENSCLMG00005008796) #17	CHD9 (ENSCLMG00005008933) #19	TOX3 (ENSCLMG00005018564) #21	sall1a (ENSCLMG00005018565) #22	CYLD (ENSCLMG00005018569) #23	nod2 (ENSCLMG00005018590) #24	nkd1 (ENSCLMG00005018592) #26	brd7 (ENSCLMG00005018593) #27	adcy7 (ENSCLMG00005018599) #28	tent4b (ENSCLMG00005019258) #29	heatr3 (ENSCLMG00005019436) #30	cnep1r1 (ENSCLMG00005019444) #31	tnfaip8l3 (ENSCLMG00005019446)	cyp19a1a (ENSCLMG00005019447)	gldn (ENSCLMG00005019455)	dmxl2 (ENSCLMG00005019473)	sema6dl (ENSCLMG00005019924)	ENSCLMG00005020005	slc24a5 (ENSCLMG00005020006)
Stickleback	MODERN SPECIES	1	rpp25b (ENSGACG00000016627)	ENSGACG00000016629	SLC12A4 (ENSGACG00000016630)	SLC6A2 (ENSGACG00000016637) #8	lpcat2 (ENSGACG00000016648) #9	mmp2 (ENSGACG00000016670) #10	irx6a (ENSGACG00000016678) #11	irx5a (ENSGACG00000016681) #12	irx3a (ENSGACG00000016682) #14	FTO (ENSGACG00000016684) #15	aktip (ENSGACG00000016685) #17	CHD9 (ENSGACG00000016694) #19	ENSGACG00000016698 #18	ENSGACG00000016699 #18	TOX3 (ENSGACG00000016700) #21	sall1a (ENSGACG00000016702) #22	CYLD (ENSGACG00000016705) #23	nod2 (ENSGACG00000016710) #24	nkd1 (ENSGACG00000016716) #26	brd7 (ENSGACG00000016718) #27	adcy7 (ENSGACG00000016722) #28	tent4b (ENSGACG00000016727) #29	heatr3 (ENSGACG00000016729) #30	cnep1r1 (ENSGACG00000016737) #31	tnfaip8l3 (ENSGACG00000016741)	cyp19a1a (ENSGACG00000016742)	gldn (ENSGACG00000016746)	dmxl2 (ENSGACG00000016748)	slc24a5 (ENSGACG00000016752)	myef2 (ENSGACG00000016759)	CTXN2 (ENSGACG00000016764)
Perciformes_a	ANCESTRAL SPECIES	13	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Channel bull blenny	MODERN SPECIES	17	ENSCGOG00000017235	ENSCGOG00000017239	rpp25b (ENSCGOG00000017241)	ENSCGOG00000017243	SLC12A4 (ENSCGOG00000017365)	SLC6A2 (ENSCGOG00000021954) #8	lpcat2 (ENSCGOG00000022516) #9	mmp2 (ENSCGOG00000022573) #10	irx6a (ENSCGOG00000022830) #11	irx5a (ENSCGOG00000022831) #12	irx3a (ENSCGOG00000022832) #14	FTO (ENSCGOG00000022836) #15	aktip (ENSCGOG00000022843) #17	CHD9 (ENSCGOG00000022957) #19	ENSCGOG00000023809	sall1a (ENSCGOG00000023814) #22	CYLD (ENSCGOG00000023831) #23	nod2 (ENSCGOG00000023937) #24	nkd1 (ENSCGOG00000023948) #26	brd7 (ENSCGOG00000023953) #27	adcy7 (ENSCGOG00000023963) #28	tent4b (ENSCGOG00000024003) #29	heatr3 (ENSCGOG00000024017) #30	cnep1r1 (ENSCGOG00000024091) #31	sdr42e1 (ENSCGOG00000024095)	wtip (ENSCGOG00000024096)	gpib (ENSCGOG00000024133)	GARRE1 (ENSCGOG00000000516)	ss18l2 (ENSCGOG00000000637)	lsm14ab (ENSCGOG00000000640)	ENSCGOG00000000644
Pike perch	MODERN SPECIES	56	PARP6 (ENSSLUG00000006480)	ENSSLUG00000006446	rpp25b (ENSSLUG00000006440)	ENSSLUG00000006434	SLC12A4 (ENSSLUG00000002058)	SLC6A2 (ENSSLUG00000021814) #8	lpcat2 (ENSSLUG00000021779) #9	mmp2 (ENSSLUG00000021732) #10	irx6a (ENSSLUG00000021709) #11	irx5a (ENSSLUG00000021702) #12	irx3a (ENSSLUG00000021695) #14	FTO (ENSSLUG00000021688) #15	aktip (ENSSLUG00000021556) #17	CHD9 (ENSSLUG00000020025) #19	TOX3 (ENSSLUG00000019880) #21	sall1a (ENSSLUG00000019875) #22	CYLD (ENSSLUG00000019846) #23	nod2 (ENSSLUG00000019680) #24	nkd1 (ENSSLUG00000019666) #26	brd7 (ENSSLUG00000019658) #27	adcy7 (ENSSLUG00000017706) #28	tent4b (ENSSLUG00000017587) #29	heatr3 (ENSSLUG00000017500) #30	cnep1r1 (ENSSLUG00000017474) #31	zgc:101040 (ENSSLUG00000017466)	sdr42e1 (ENSSLUG00000017458)	wtip (ENSSLUG00000017397)	gpib (ENSSLUG00000016442)	GARRE1 (ENSSLUG00000016368)	ss18l2 (ENSSLUG00000016355)	lsm14ab (ENSSLUG00000016346)
Eupecaria_C	ANCESTRAL SPECIES	11	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	7	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
European seabass	MODERN SPECIES	18	pkma (ENSDLAG00005009008)	ENSDLAG00005008853	ENSDLAG00005029281	ENSDLAG00005008826	ENSDLAG00005002933	SLC6A2 (ENSDLAG00005002040) #8	lpcat2 (ENSDLAG00005001985) #9	mmp2 (ENSDLAG00005001814) #10	irx6a (ENSDLAG00005001796) #11	irx5a (ENSDLAG00005029194) #12	irx3a (ENSDLAG00005001776) #14	FTO (ENSDLAG00005027892) #15	aktip (ENSDLAG00005028186) #17	ENSDLAG00005025130 #19	TOX3 (ENSDLAG00005025035) #21	sall1a (ENSDLAG00005025026) #22	CYLD (ENSDLAG00005025000) #23	nod2 (ENSDLAG00005024955) #24	nkd1 (ENSDLAG00005032053) #26	brd7 (ENSDLAG00005024941) #27	adcy7 (ENSDLAG00005024782) #28	tent4b (ENSDLAG00005024732) #29	heatr3 (ENSDLAG00005030804) #30	sdr42e1 (ENSDLAG00005026879)	wtip (ENSDLAG00005024678)	gpib (ENSDLAG00005024556)	ENSDLAG00005024531	ss18l2 (ENSDLAG00005024522)	lsm14ab (ENSDLAG00005030677)	ENSDLAG00005029772	KCTD15 (ENSDLAG00005027432)
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005023062	ENSLCRG00005023063	rpp25b (ENSLCRG00005023064)	ENSLCRG00005023066	SLC12A4 (ENSLCRG00005023077)	SLC6A2 (ENSLCRG00005023232) #8	lpcat2 (ENSLCRG00005023349) #9	mmp2 (ENSLCRG00005023354) #10	irx6a (ENSLCRG00005023389) #11	irx5a (ENSLCRG00005023390) #12	irx3a (ENSLCRG00005023391) #14	FTO (ENSLCRG00005023393) #15	aktip (ENSLCRG00005023397) #17	CHD9 (ENSLCRG00005023425) #19	TOX3 (ENSLCRG00005023714) #21	sall1a (ENSLCRG00005023715) #22	CYLD (ENSLCRG00005023716) #23	NOD2 (ENSLCRG00005002376) #24	nkd1 (ENSLCRG00005002547) #26	brd7 (ENSLCRG00005002572) #27	adcy7 (ENSLCRG00005003141) #28	tent4b (ENSLCRG00005003591) #29	heatr3 (ENSLCRG00005004088) #30	cnep1r1 (ENSLCRG00005004229) #31	ENSLCRG00005004230	ENSLCRG00005004232	sdr42e1 (ENSLCRG00005004234)	wtip (ENSLCRG00005004236)	gpib (ENSLCRG00005004325)	GARRE1 (ENSLCRG00005004472)	ss18l2 (ENSLCRG00005004473)
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010012857	rpp25b (ENSSAUG00010012892)	ENSSAUG00010012893	SLC12A4 (ENSSAUG00010012895)	ENSSAUG00010012917	SLC6A2 (ENSSAUG00010012930) #8	lpcat2 (ENSSAUG00010014247) #9	mmp2 (ENSSAUG00010014278) #10	irx6a (ENSSAUG00010014399) #11	irx5a (ENSSAUG00010014405) #12	irx3a (ENSSAUG00010014407) #14	FTO (ENSSAUG00010014412) #15	aktip (ENSSAUG00010014424) #17	CHD9 (ENSSAUG00010014817) #19	TOX3 (ENSSAUG00010016494) #21	sall1a (ENSSAUG00010016498) #22	CYLD (ENSSAUG00010016500) #23	nod2 (ENSSAUG00010016509) #24	nkd1 (ENSSAUG00010016522) #26	brd7 (ENSSAUG00010016523) #27	adcy7 (ENSSAUG00010016558) #28	tent4b (ENSSAUG00010018910) #29	heatr3 (ENSSAUG00010018924) #30	cnep1r1 (ENSSAUG00010019661) #31	zgc:101040 (ENSSAUG00010019675)	C19orf12 (ENSSAUG00010019677)	C19orf12 (ENSSAUG00010019680)	sdr42e1 (ENSSAUG00010019681)	wtip (ENSSAUG00010019683)	gpib (ENSSAUG00010019701)	GARRE1 (ENSSAUG00010020252)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Climbing perch	MODERN SPECIES	16	ENSATEG00000002188	ENSATEG00000002283	rpp25b (ENSATEG00000027420)	ENSATEG00000026278	ENSATEG00000002376	SLC6A2 (ENSATEG00000002473) #8	lpcat2 (ENSATEG00000002566) #9	mmp2 (ENSATEG00000002575) #10	irx6a (ENSATEG00000002637) #11	irx5a (ENSATEG00000002662) #12	irx3a (ENSATEG00000002688) #14	FTO (ENSATEG00000002699) #15	aktip (ENSATEG00000002703) #17	ENSATEG00000002748 #19	ENSATEG00000002947	sall1a (ENSATEG00000003006) #22	CYLD (ENSATEG00000003025) #23	nod2 (ENSATEG00000003122) #24	nkd1 (ENSATEG00000003139) #26	brd7 (ENSATEG00000003146) #27	adcy7 (ENSATEG00000003161) #28	tent4b (ENSATEG00000003179) #29	heatr3 (ENSATEG00000026766) #30	CNEP1R1 (ENSATEG00000027563) #31	ENSATEG00000027001	ENSATEG00000029184	ENSATEG00000026266	sdr42e1 (ENSATEG00000003407)	wtip (ENSATEG00000003414)	gpib (ENSATEG00000003452)	ENSATEG00000003534
Siamese fighting fish	MODERN SPECIES	14	ENSBSLG00000021677	ENSBSLG00000021682	rpp25b (ENSBSLG00000021684)	ENSBSLG00000021686	SLC12A4 (ENSBSLG00000022056)	SLC6A2 (ENSBSLG00000024700) #8	lpcat2 (ENSBSLG00000024976) #9	mmp2 (ENSBSLG00000025064) #10	irx6a (ENSBSLG00000025143) #11	irx5a (ENSBSLG00000005290) #12	irx3a (ENSBSLG00000005404) #14	FTO (ENSBSLG00000005434) #15	aktip (ENSBSLG00000005524) #17	CHD9 (ENSBSLG00000005883) #19	TOX3 (ENSBSLG00000009724) #21	sall1a (ENSBSLG00000009855) #22	CYLD (ENSBSLG00000009895) #23	nod2 (ENSBSLG00000010171) #24	nkd1 (ENSBSLG00000010211) #26	brd7 (ENSBSLG00000010239) #27	adcy7 (ENSBSLG00000010726) #28	tent4b (ENSBSLG00000011102) #29	heatr3 (ENSBSLG00000011243) #30	ENSBSLG00000011295	ENSBSLG00000011299	ENSBSLG00000011302	sdr42e1 (ENSBSLG00000011637)	wtip (ENSBSLG00000011701)	gpib (ENSBSLG00000011985)	GARRE1 (ENSBSLG00000014094)	ss18l2 (ENSBSLG00000014237)
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000003253	ENSMAMG00000003343	rpp25b (ENSMAMG00000028359)	ENSMAMG00000003377	ENSMAMG00000003392	SLC6A2 (ENSMAMG00000003500) #8	lpcat2 (ENSMAMG00000003595) #9	mmp2 (ENSMAMG00000003664) #10	irx6a (ENSMAMG00000003743) #11	irx5a (ENSMAMG00000003779) #12	irx3a (ENSMAMG00000025354) #14	FTO (ENSMAMG00000003830) #15	aktip (ENSMAMG00000003852) #17	ENSMAMG00000003909 #19	TOX3 (ENSMAMG00000004125) #21	sall1a (ENSMAMG00000004164) #22	CYLD (ENSMAMG00000004219) #23	nod2 (ENSMAMG00000004330) #24	nkd1 (ENSMAMG00000004411) #26	brd7 (ENSMAMG00000004453) #27	adcy7 (ENSMAMG00000004499) #28	tent4b (ENSMAMG00000004618) #29	heatr3 (ENSMAMG00000004653) #30	CNEP1R1 (ENSMAMG00000025311) #31	ENSMAMG00000004754	sdr42e1 (ENSMAMG00000028360)	wtip (ENSMAMG00000004782)	gpib (ENSMAMG00000004828)	ENSMAMG00000004885	ss18l2 (ENSMAMG00000004928)	lsm14ab (ENSMAMG00000004948)
Carangaria	ANCESTRAL SPECIES	11	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a	ENSGT00390000011620.b.f
Turbot	MODERN SPECIES	17	ENSSMAG00000008513	ENSSMAG00000008575	rpp25b (ENSSMAG00000008643)	ENSSMAG00000008666	ENSSMAG00000008682	SLC6A2 (ENSSMAG00000008717) #8	lpcat2 (ENSSMAG00000008763) #9	mmp2 (ENSSMAG00000008836) #10	irx6a (ENSSMAG00000008880) #11	irx5a (ENSSMAG00000008914) #12	irx3a (ENSSMAG00000031233) #14	FTO (ENSSMAG00000008928) #15	aktip (ENSSMAG00000008936) #17	ENSSMAG00000008953 #19	TOX3 (ENSSMAG00000009123) #21	sall1a (ENSSMAG00000009160) #22	ENSSMAG00000031343	CYLD (ENSSMAG00000009173) #23	nod2 (ENSSMAG00000009305) #24	nkd1 (ENSSMAG00000009368) #26	brd7 (ENSSMAG00000009397) #27	adcy7 (ENSSMAG00000009414) #28	tent4b (ENSSMAG00000009474) #29	heatr3 (ENSSMAG00000038075) #30	CNEP1R1 (ENSSMAG00000032497) #31	sdr42e1 (ENSSMAG00000035062)	wtip (ENSSMAG00000009606)	gpib (ENSSMAG00000009643)	ENSSMAG00000009697	ss18l2 (ENSSMAG00000009760)	lsm14ab (ENSSMAG00000009782)
Tongue sole	MODERN SPECIES	15	ENSCSEG00000008715	ENSCSEG00000008723	snrpa1 (ENSCSEG00000008758)	selenos (ENSCSEG00000008771)	chsy1 (ENSCSEG00000008810)	ENSCSEG00000008836	aldh1a3 (ENSCSEG00000008999)	asb7 (ENSCSEG00000009020)	cd81a (ENSCSEG00000009033)	ENSCSEG00000009066	irx3a (ENSCSEG00000009128) #14	FTO (ENSCSEG00000009135) #15	aktip (ENSCSEG00000009168) #17	CHD9 (ENSCSEG00000009209) #19	TOX3 (ENSCSEG00000009338) #21	sall1a (ENSCSEG00000009349) #22	kif23 (ENSCSEG00000009382)	SCML2 (ENSCSEG00000009536)	cdkl5 (ENSCSEG00000009558)	ENSCSEG00000009585	ppef1 (ENSCSEG00000009602)	PHKA2 (ENSCSEG00000009624)	ap1s2 (ENSCSEG00000009663)	ZRSR2 (ENSCSEG00000009682)	TM6SF1 (ENSCSEG00000009726)	BTBD1 (ENSCSEG00000009763)	ENSCSEG00000009786	RAMAC (ENSCSEG00000009800)	homer2 (ENSCSEG00000009815)	FSD2 (ENSCSEG00000009849)	ENSCSEG00000009860
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Seriola	ANCESTRAL SPECIES	13	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.j	ENSGT00390000012054.b.i	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Greater amberjack	MODERN SPECIES	1	ENSSDUG00000005658	SLC12A4 (ENSSDUG00000005688)	ENSSDUG00000005744	SLC6A2 (ENSSDUG00000005755) #8	lpcat2 (ENSSDUG00000005797) #9	mmp2 (ENSSDUG00000005944) #10	irx6a (ENSSDUG00000005998) #11	irx5a (ENSSDUG00000006018) #12	ENSSDUG00000006031	irx3a (ENSSDUG00000006055) #14	FTO (ENSSDUG00000006070) #15	aktip (ENSSDUG00000006082) #17	CHD9 (ENSSDUG00000006139) #19	TOX3 (ENSSDUG00000006450) #21	ENSSDUG00000006485	sall1a (ENSSDUG00000006507) #22	CYLD (ENSSDUG00000006536) #23	nod2 (ENSSDUG00000006648) #24	nkd1 (ENSSDUG00000006672) #26	brd7 (ENSSDUG00000006703) #27	adcy7 (ENSSDUG00000006797) #28	tent4b (ENSSDUG00000006848) #29	heatr3 (ENSSDUG00000006889) #30	cnep1r1 (ENSSDUG00000006917) #31	ENSSDUG00000006928	sdr42e1 (ENSSDUG00000006949)	ENSSDUG00000006958	wtip (ENSSDUG00000006988)	gpib (ENSSDUG00000007042)	GARRE1 (ENSSDUG00000007105)	ss18l2 (ENSSDUG00000007158)
Yellowtail amberjack	MODERN SPECIES	3186									irx5a (ENSSLDG00000018200) #12	ENSSLDG00000018183	irx3a (ENSSLDG00000018173) #14	FTO (ENSSLDG00000018141) #15	aktip (ENSSLDG00000018106) #17	CHD9 (ENSSLDG00000017818) #19	TOX3 (ENSSLDG00000017732) #21	sall1a (ENSSLDG00000017721) #22	CYLD (ENSSLDG00000017572) #23	nod2 (ENSSLDG00000017497) #24	nkd1 (ENSSLDG00000017484) #26	brd7 (ENSSLDG00000017420) #27	adcy7 (ENSSLDG00000017343) #28	tent4b (ENSSLDG00000017282) #29	heatr3 (ENSSLDG00000017258) #30	cnep1r1 (ENSSLDG00000017238) #31	ENSSLDG00000017221	ENSSLDG00000017202	sdr42e1 (ENSSLDG00000017190)	wtip (ENSSLDG00000017162)	gpib (ENSSLDG00000017085)	ss18l2 (ENSSLDG00000016988)	GARRE1 (ENSSLDG00000016922)
Barramundi perch	MODERN SPECIES	98	PARP6 (ENSLCAG00010018140)	ENSLCAG00010018131	rpp25b (ENSLCAG00010018130)	ENSLCAG00010018128	SLC12A4 (ENSLCAG00010017027)	SLC6A2 (ENSLCAG00010016861) #8	lpcat2 (ENSLCAG00010016834) #9	mmp2 (ENSLCAG00010016793) #10	irx6a (ENSLCAG00010016783) #11	irx5a (ENSLCAG00010016777) #12	irx3a (ENSLCAG00010016776) #14	FTO (ENSLCAG00010016765) #15	aktip (ENSLCAG00010016754) #17	CHD9 (ENSLCAG00010016386) #19	TOX3 (ENSLCAG00010016271) #21	sall1a (ENSLCAG00010016267) #22	CYLD (ENSLCAG00010016261) #23	nod2 (ENSLCAG00010016222) #24	nkd1 (ENSLCAG00010016201) #26	brd7 (ENSLCAG00010016194) #27	adcy7 (ENSLCAG00010016137) #28	tent4b (ENSLCAG00010016119) #29	heatr3 (ENSLCAG00010016105) #30	cnep1r1 (ENSLCAG00010016091) #31	zgc:101040 (ENSLCAG00010016085)	sdr42e1 (ENSLCAG00010016081)	wtip (ENSLCAG00010016077)	gpib (ENSLCAG00010015967)	GARRE1 (ENSLCAG00010015925)	ss18l2 (ENSLCAG00010015916)	lsm14ab (ENSLCAG00010015909)
Ovalentaria	ANCESTRAL SPECIES	17	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Atherinomorphae	ANCESTRAL SPECIES	8	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Cyprinodontiformes	ANCESTRAL SPECIES	9	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Aplocheiloidei	ANCESTRAL SPECIES	40	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a	ENSGT00390000011620.b.f	ENSGT00940000159496.k
Mangrove rivulus	MODERN SPECIES	72	PARP6 (ENSKMAG00000017369)	ENSKMAG00000017307	rpp25b (ENSKMAG00000017281)	ENSKMAG00000017262	SLC12A4 (ENSKMAG00000017191)	SLC6A2 (ENSKMAG00000017126) #8	lpcat2 (ENSKMAG00000017073) #9	mmp2 (ENSKMAG00000017044) #10	irx6a (ENSKMAG00000017027) #11	irx5a (ENSKMAG00000017013) #12	irx3a (ENSKMAG00000017003) #14	FTO (ENSKMAG00000016992) #15	aktip (ENSKMAG00000016957) #17	CHD9 (ENSKMAG00000016784) #19	TOX3 (ENSKMAG00000016708) #21	sall1a (ENSKMAG00000016681) #22
Turquoise killifish	MODERN SPECIES	1616	ENSNFUG00015021064	LPCAT2 (ENSNFUG00015021071) #9	mmp2 (ENSNFUG00015021127) #10	ENSNFUG00015021874	irx6a (ENSNFUG00015021876) #11	IRX5A (ENSNFUG00015021882) #12	irx3a (ENSNFUG00015021888) #14	FTO (ENSNFUG00015021892) #15	ENSNFUG00015021899	AKTIP (ENSNFUG00015021914) #17	CHD9 (ENSNFUG00015022190) #19	TOX3 (ENSNFUG00015000111) #21	ENSNFUG00015000142	ENSNFUG00015000149	ENSNFUG00015000150	SALL1A (ENSNFUG00015000155) #22	ENSNFUG00015000159	CYLD (ENSNFUG00015000223) #23	ENSNFUG00015000271	nkd1 (ENSNFUG00015000280) #26	ENSNFUG00015000292	BRD7 (ENSNFUG00015000326) #27	adcy7 (ENSNFUG00015000628) #28	ENSNFUG00015000985	ENSNFUG00015000989	large2 (ENSNFUG00015001017)	ENSNFUG00015001068	ENSNFUG00015001072	ENSNFUG00015001078	ENSNFUG00015001083	ENSNFUG00015001087
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.b	ENSGT00390000012054.b.a.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
NAME_4	ANCESTRAL SPECIES	161															ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.b	ENSGT00390000012054.b.a.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Mummichog	MODERN SPECIES	2446															TOX3 (ENSFHEG00000012636) #21	sall1a (ENSFHEG00000012579) #22	CYLD (ENSFHEG00000012536) #23	nkd1 (ENSFHEG00000012442) #26	brd7 (ENSFHEG00000012431) #27	adcy7 (ENSFHEG00000012417) #28	tent4b (ENSFHEG00000012383) #29	heatr3 (ENSFHEG00000012372) #30	cnep1r1 (ENSFHEG00000012358) #31	ENSFHEG00000012324	ENSFHEG00000012292	ENSFHEG00000012265
Sheepshead minnow	MODERN SPECIES	332															TOX3 (ENSCVAG00000020496) #21	sall1a (ENSCVAG00000020513) #22	CYLD (ENSCVAG00000020619) #23	ENSCVAG00000020632	nod2 (ENSCVAG00000020668) #24	nkd1 (ENSCVAG00000020673) #26	brd7 (ENSCVAG00000020684) #27	adcy7 (ENSCVAG00000020723) #28	tent4b (ENSCVAG00000020733) #29	heatr3 (ENSCVAG00000020742) #30	cnep1r1 (ENSCVAG00000020764) #31	zgc:101040 (ENSCVAG00000020769)	sdr42e1 (ENSCVAG00000020779)	wtip (ENSCVAG00000020802)	gpib (ENSCVAG00000020892)	GARRE1 (ENSCVAG00000020935)	ss18l2 (ENSCVAG00000020948)
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000178766	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.b	ENSGT00390000012054.b.a.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000178766	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.b	ENSGT00390000012054.b.a.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
NAME_6	ANCESTRAL SPECIES	39	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000178766	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.b	ENSGT00390000012054.b.a.a.a	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Sailfin molly	MODERN SPECIES	109															TOX3 (ENSPLAG00000022527) #21	sall1a (ENSPLAG00000022539) #22	CYLD (ENSPLAG00000022615) #23	nod2 (ENSPLAG00000022656) #24	ENSPLAG00000022662	nkd1 (ENSPLAG00000022727) #26	brd7 (ENSPLAG00000022816) #27
Amazon molly	MODERN SPECIES	298	rpp25b (ENSPFOG00000016462)	ENSPFOG00000016405	SLC12A4 (ENSPFOG00000016276)	SLC6A2 (ENSPFOG00000016149) #8	lpcat2 (ENSPFOG00000016106) #9	mmp2 (ENSPFOG00000016045) #10	irx6a (ENSPFOG00000016024) #11	irx5a (ENSPFOG00000016014) #12	irx5a (ENSPFOG00000016012) #12	irx3a (ENSPFOG00000016005) #14	FTO (ENSPFOG00000015987) #15	aktip (ENSPFOG00000015958) #17	CHD9 (ENSPFOG00000015839) #19	ENSPFOG00000022662 #18	TOX3 (ENSPFOG00000015808) #21	sall1a (ENSPFOG00000015799) #22	CYLD (ENSPFOG00000015716) #23	nod2 (ENSPFOG00000015686) #24	nkd1 (ENSPFOG00000015633) #26	brd7 (ENSPFOG00000015523) #27	adcy7 (ENSPFOG00000015338) #28	tent4b (ENSPFOG00000015267) #29	heatr3 (ENSPFOG00000015145) #30	cnep1r1 (ENSPFOG00000015133) #31	zgc:101040 (ENSPFOG00000015128)	sdr42e1 (ENSPFOG00000015119)	wtip (ENSPFOG00000015084)	gpib (ENSPFOG00000014929)	GARRE1 (ENSPFOG00000014839)	ss18l2 (ENSPFOG00000014827)	lsm14ab (ENSPFOG00000014724)
Guppy	MODERN SPECIES	455	ENSPREG00000005911	rpp25b (ENSPREG00000005962)	ENSPREG00000005979	SLC12A4 (ENSPREG00000006014)	SLC6A2 (ENSPREG00000006143) #8	lpcat2 (ENSPREG00000006181) #9	mmp2 (ENSPREG00000006224) #10	irx6a (ENSPREG00000006276) #11	ENSPREG00000006287	irx5a (ENSPREG00000006293) #12	irx3a (ENSPREG00000006315) #14	FTO (ENSPREG00000006358) #15	aktip (ENSPREG00000006411) #17	CHD9 (ENSPREG00000006473) #19	TOX3 (ENSPREG00000006754) #21	sall1a (ENSPREG00000006802) #22	CYLD (ENSPREG00000006842) #23	nod2 (ENSPREG00000006956) #24	nkd1 (ENSPREG00000006999) #26	brd7 (ENSPREG00000007032) #27	adcy7 (ENSPREG00000007085) #28	tent4b (ENSPREG00000007243) #29	heatr3 (ENSPREG00000007268) #30	cnep1r1 (ENSPREG00000007293) #31	ENSPREG00000007315	ENSPREG00000007329	sdr42e1 (ENSPREG00000007333)	wtip (ENSPREG00000007344)	gpib (ENSPREG00000007409)	GARRE1 (ENSPREG00000007617)	ss18l2 (ENSPREG00000007658)
Platyfish	MODERN SPECIES	18	ENSXMAG00000018769	rpp25b (ENSXMAG00000007909)	ENSXMAG00000007889	SLC12A4 (ENSXMAG00000007865)	SLC6A2 (ENSXMAG00000007834) #8	lpcat2 (ENSXMAG00000007819) #9	mmp2 (ENSXMAG00000007790) #10	irx6a (ENSXMAG00000007786) #11	ENSXMAG00000029839	irx5a (ENSXMAG00000029170) #12	irx3a (ENSXMAG00000025171) #14	FTO (ENSXMAG00000022095) #15	aktip (ENSXMAG00000016185) #17	CHD9 (ENSXMAG00000016192) #19	TOX3 (ENSXMAG00000016268) #21	sall1a (ENSXMAG00000016273) #22	CYLD (ENSXMAG00000016279) #23	nod2 (ENSXMAG00000016318) #24	nkd1 (ENSXMAG00000016338) #26	brd7 (ENSXMAG00000016346) #27	adcy7 (ENSXMAG00000016360) #28	tent4b (ENSXMAG00000023205) #29	heatr3 (ENSXMAG00000016449) #30	cnep1r1 (ENSXMAG00000016481) #31	ENSXMAG00000029165	ENSXMAG00000023908	sdr42e1 (ENSXMAG00000024494)	wtip (ENSXMAG00000016487)	gpib (ENSXMAG00000016488)	GARRE1 (ENSXMAG00000016500)	ss18l2 (ENSXMAG00000027005)
Oryzias	ANCESTRAL SPECIES	13	ENSGT00940000154664.h.m.b.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.d	ENSGT00390000012054.b.a.a.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Oryzias_a	ANCESTRAL SPECIES	6	ENSGT00940000154664.h.m.b.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.d	ENSGT00390000012054.b.a.a.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Japanese Medaka HdrR	MODERN SPECIES	17	rpp25b (ENSORLG00000013397)	ENSORLG00000013412	SLC12A4 (ENSORLG00000013517)	SLC6A2 (ENSORLG00000013608) #8	lpcat2 (ENSORLG00000013637) #9	mmp2 (ENSORLG00000013688) #10	ENSORLG00000029208	irx6a (ENSORLG00000013697) #11	irx5a (ENSORLG00000013711) #12	irx3a (ENSORLG00000013724) #14	FTO (ENSORLG00000013729) #15	aktip (ENSORLG00000013747) #17	CHD9 (ENSORLG00000013810) #19	ENSORLG00000023505	TOX3 (ENSORLG00000022774) #21	sall1a (ENSORLG00000013827) #22	CYLD (ENSORLG00000013864) #23	nod2 (ENSORLG00000013891) #24	ENSORLG00000028294	nkd1 (ENSORLG00000013899) #26	brd7 (ENSORLG00000013923) #27	adcy7 (ENSORLG00000013973) #28	tent4b (ENSORLG00000013989) #29	heatr3 (ENSORLG00000014021) #30	cnep1r1 (ENSORLG00000014031) #31	ENSORLG00000014034	ENSORLG00000014039	sdr42e1 (ENSORLG00000014049)	wtip (ENSORLG00000029757)	gpib (ENSORLG00000014082)	GARRE1 (ENSORLG00000014107)
Chinese medaka	MODERN SPECIES	901	KLHL10 (ENSOSIG00000023898)	ENSOSIG00000023893	rpp25b (ENSOSIG00000023871)	ENSOSIG00000023869	SLC12A4 (ENSOSIG00000023746)	SLC6A2 (ENSOSIG00000023564) #8	lpcat2 (ENSOSIG00000023516) #9	mmp2 (ENSOSIG00000023506) #10	irx6a (ENSOSIG00000023478) #11	irx5a (ENSOSIG00000023477) #12	irx3a (ENSOSIG00000023469) #14	FTO (ENSOSIG00000023468) #15	aktip (ENSOSIG00000023464) #17	CHD9 (ENSOSIG00000023401) #19	TOX3 (ENSOSIG00000023315) #21	sall1a (ENSOSIG00000023302) #22	CYLD (ENSOSIG00000023298) #23	nod2 (ENSOSIG00000023253) #24	nkd1 (ENSOSIG00000023245) #26	brd7 (ENSOSIG00000023242) #27	adcy7 (ENSOSIG00000023229) #28	tent4b (ENSOSIG00000023212) #29	heatr3 (ENSOSIG00000023207) #30	zgc:101040 (ENSOSIG00000023189)	sdr42e1 (ENSOSIG00000023184)	wtip (ENSOSIG00000023182)	gpib (ENSOSIG00000023167)	GARRE1 (ENSOSIG00000023157)	ss18l2 (ENSOSIG00000023154)	lsm14ab (ENSOSIG00000023149)	ENSOSIG00000023144
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000154664.h.m.b.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.d	ENSGT00390000012054.b.a.a.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Indian medaka	MODERN SPECIES	26	ENSOMEG00000015393	SLC12A4 (ENSOMEG00000015527)	SLC6A2 (ENSOMEG00000015605) #8	lpcat2 (ENSOMEG00000015631) #9	ENSOMEG00000015650	mmp2 (ENSOMEG00000015721) #10	irx6a (ENSOMEG00000015760) #11	irx5a (ENSOMEG00000015771) #12	irx3a (ENSOMEG00000015802) #14	FTO (ENSOMEG00000015831) #15	ENSOMEG00000015842	aktip (ENSOMEG00000015901) #17	CHD9 (ENSOMEG00000015978) #19	ENSOMEG00000015998	TOX3 (ENSOMEG00000016005) #21	sall1a (ENSOMEG00000016043) #22	CYLD (ENSOMEG00000016155) #23	nod2 (ENSOMEG00000016186) #24	nkd1 (ENSOMEG00000016211) #26	brd7 (ENSOMEG00000016248) #27	adcy7 (ENSOMEG00000016330) #28	tent4b (ENSOMEG00000016359) #29	heatr3 (ENSOMEG00000016387) #30	cnep1r1 (ENSOMEG00000016405) #31	ENSOMEG00000016417	ENSOMEG00000016429	sdr42e1 (ENSOMEG00000016443)	wtip (ENSOMEG00000016486)	gpib (ENSOMEG00000016553)	GARRE1 (ENSOMEG00000016605)	ss18l2 (ENSOMEG00000016624)
Javanese ricefish	MODERN SPECIES	17	ENSOJAG00000020563	KLHL10 (ENSOJAG00000020633)	rpp25b (ENSOJAG00000000073)	ENSOJAG00000000110	SLC12A4 (ENSOJAG00000000578)	SLC6A2 (ENSOJAG00000001228) #8	lpcat2 (ENSOJAG00000001328) #9	mmp2 (ENSOJAG00000001420) #10	irx6a (ENSOJAG00000001559) #11	irx5a (ENSOJAG00000001567) #12	irx3a (ENSOJAG00000001574) #14	FTO (ENSOJAG00000001593) #15	aktip (ENSOJAG00000001611) #17	CHD9 (ENSOJAG00000001803) #19	TOX3 (ENSOJAG00000002647) #21	sall1a (ENSOJAG00000002699) #22	CYLD (ENSOJAG00000002732) #23	nod2 (ENSOJAG00000003016) #24	nkd1 (ENSOJAG00000003191) #26	brd7 (ENSOJAG00000003227) #27	adcy7 (ENSOJAG00000003248) #28	tent4b (ENSOJAG00000003379) #29	heatr3 (ENSOJAG00000003531) #30	ENSOJAG00000003611	cnep1r1 (ENSOJAG00000003644) #31	ENSOJAG00000003718	ENSOJAG00000003738	sdr42e1 (ENSOJAG00000003751)	wtip (ENSOJAG00000003763)	GARRE1 (ENSOJAG00000004308)	ss18l2 (ENSOJAG00000004906)
Ovalentaria_B	ANCESTRAL SPECIES	10	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a	ENSGT00390000012054.b.b	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Cichlidae	ANCESTRAL SPECIES	11	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Pseudocrenilabrinae	ANCESTRAL SPECIES	13	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.f	ENSGT00390000012054.b.a.a.e	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	13	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.f	ENSGT00390000012054.b.a.a.e	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Haplochromini	ANCESTRAL SPECIES	11	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.f	ENSGT00390000012054.b.a.a.e	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Burton s mouthbrooder	MODERN SPECIES	272	rpp25b (ENSHBUG00000001861)	ENSHBUG00000001854	SLC12A4 (ENSHBUG00000001837)	SLC6A2 (ENSHBUG00000023807) #8	lpcat2 (ENSHBUG00000023712) #9	mmp2 (ENSHBUG00000023687) #10	irx6a (ENSHBUG00000023628) #11	irx5a (ENSHBUG00000023614) #12	ENSHBUG00000023568	irx3a (ENSHBUG00000023551) #14	FTO (ENSHBUG00000023512) #15	aktip (ENSHBUG00000023473) #17	CHD9 (ENSHBUG00000023322) #19	ENSHBUG00000022070 #18	TOX3 (ENSHBUG00000022049) #21	sall1a (ENSHBUG00000022005) #22	CYLD (ENSHBUG00000021986) #23	nod2 (ENSHBUG00000021836) #24	nkd1 (ENSHBUG00000021793) #26	brd7 (ENSHBUG00000021765) #27	adcy7 (ENSHBUG00000021651) #28	tent4b (ENSHBUG00000021610) #29	heatr3 (ENSHBUG00000021602) #30	cnep1r1 (ENSHBUG00000021590) #31	ENSHBUG00000021556	ENSHBUG00000021546	sdr42e1 (ENSHBUG00000021502)	wtip (ENSHBUG00000000663)	gpib (ENSHBUG00000021470)	GARRE1 (ENSHBUG00000021415)	ss18l2 (ENSHBUG00000021367)
Haplochromini_A	ANCESTRAL SPECIES	10	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.f	ENSGT00390000012054.b.a.a.e	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Haplochromini_B	ANCESTRAL SPECIES	3	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.a.a.f	ENSGT00390000012054.b.a.a.e	ENSGT00390000012054.b.a.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Eastern happy	MODERN SPECIES		ENSACLG00000016215	rpp25b (ENSACLG00000016269)	ENSACLG00000016276	SLC12A4 (ENSACLG00000016297)	SLC6A2 (ENSACLG00000016437) #8	lpcat2 (ENSACLG00000016538) #9	mmp2 (ENSACLG00000016611) #10	irx6a (ENSACLG00000016692) #11	irx5a (ENSACLG00000016713) #12	ENSACLG00000016758	irx3a (ENSACLG00000016776) #14	FTO (ENSACLG00000016803) #15	aktip (ENSACLG00000016856) #17	CHD9 (ENSACLG00000016899) #19	TOX3 (ENSACLG00000017068) #21	sall1a (ENSACLG00000017148) #22	CYLD (ENSACLG00000017171) #23	nod2 (ENSACLG00000017409) #24	nkd1 (ENSACLG00000017488) #26	brd7 (ENSACLG00000017509) #27	adcy7 (ENSACLG00000017568) #28	tent4b (ENSACLG00000017633) #29	heatr3 (ENSACLG00000017658) #30	cnep1r1 (ENSACLG00000017758) #31	ENSACLG00000017784	ENSACLG00000017788	ENSACLG00000017815	sdr42e1 (ENSACLG00000017826)	wtip (ENSACLG00000017833)	gpib (ENSACLG00000017912)	GARRE1 (ENSACLG00000018026)
Zebra mbuna	MODERN SPECIES	1091	rpp25b (ENSMZEG00005007118)	ENSMZEG00005007106	SLC12A4 (ENSMZEG00005007044)	SLC6A2 (ENSMZEG00005006987) #8	lpcat2 (ENSMZEG00005006930) #9	mmp2 (ENSMZEG00005006880) #10	irx6a (ENSMZEG00005006857) #11	irx5a (ENSMZEG00005006829) #12	ENSMZEG00005006800	irx3a (ENSMZEG00005006772) #14	FTO (ENSMZEG00005006743) #15	aktip (ENSMZEG00005006707) #17	CHD9 (ENSMZEG00005006581) #19	ENSMZEG00005006523	ENSMZEG00005006492	sall1a (ENSMZEG00005006479) #22	CYLD (ENSMZEG00005006355) #23	nod2 (ENSMZEG00005006319) #24	nkd1 (ENSMZEG00005006305) #26	brd7 (ENSMZEG00005006263) #27	adcy7 (ENSMZEG00005006215) #28	tent4b (ENSMZEG00005006186) #29	heatr3 (ENSMZEG00005006165) #30	cnep1r1 (ENSMZEG00005006145) #31	ENSMZEG00005006135	ENSMZEG00005006123	ENSMZEG00005006105	sdr42e1 (ENSMZEG00005006103)	wtip (ENSMZEG00005006076)	gpib (ENSMZEG00005006021)	GARRE1 (ENSMZEG00005005988)
P. nyererei	MODERN SPECIES	320	ENSPNYG00000011432	ENSPNYG00000011410	SLC6A2 (ENSPNYG00000011376) #8	lpcat2 (ENSPNYG00000011352) #9	mmp2 (ENSPNYG00000011315) #10	irx6a (ENSPNYG00000011288) #11	irx5a (ENSPNYG00000011259) #12	ENSPNYG00000011243	irx3a (ENSPNYG00000011218) #14	ENSPNYG00000011189	FTO (ENSPNYG00000011161) #15	aktip (ENSPNYG00000011120) #17	CHD9 (ENSPNYG00000010947) #19	ENSPNYG00000010901 #18	TOX3 (ENSPNYG00000010875) #21	sall1a (ENSPNYG00000010865) #22	CYLD (ENSPNYG00000010780) #23	nod2 (ENSPNYG00000010746) #24	nkd1 (ENSPNYG00000010683) #26	brd7 (ENSPNYG00000010644) #27	adcy7 (ENSPNYG00000010540) #28	tent4b (ENSPNYG00000010512) #29	heatr3 (ENSPNYG00000010490) #30	cnep1r1 (ENSPNYG00000010462) #31	ENSPNYG00000010450	ENSPNYG00000010428	ENSPNYG00000010408	sdr42e1 (ENSPNYG00000010400)	wtip (ENSPNYG00000010369)	gpib (ENSPNYG00000010315)	GARRE1 (ENSPNYG00000010277)
Lyretail cichlid	MODERN SPECIES	290	ENSNBRG00000010105	rpp25b (ENSNBRG00000010094)	ENSNBRG00000010037	SLC12A4 (ENSNBRG00000009962)	SLC6A2 (ENSNBRG00000009926) #8	lpcat2 (ENSNBRG00000009888) #9	mmp2 (ENSNBRG00000009858) #10	irx6a (ENSNBRG00000009831) #11	irx5a (ENSNBRG00000009810) #12	ENSNBRG00000009792	irx3a (ENSNBRG00000009776) #14	FTO (ENSNBRG00000009670) #15	aktip (ENSNBRG00000009622) #17	CHD9 (ENSNBRG00000009423) #19	TOX3 (ENSNBRG00000009332) #21	sall1a (ENSNBRG00000009307) #22	CYLD (ENSNBRG00000009254) #23	nod2 (ENSNBRG00000009217) #24	ENSNBRG00000009203	nkd1 (ENSNBRG00000009143) #26	brd7 (ENSNBRG00000009096) #27	adcy7 (ENSNBRG00000008995) #28	tent4b (ENSNBRG00000008931) #29	heatr3 (ENSNBRG00000008875) #30	cnep1r1 (ENSNBRG00000008843) #31	ENSNBRG00000008815	ENSNBRG00000008797	ENSNBRG00000008776	sdr42e1 (ENSNBRG00000008768)	wtip (ENSNBRG00000008738)	gpib (ENSNBRG00000008511)
Nile tilapia	MODERN SPECIES		ENSONIG00000002755	rpp25b (ENSONIG00000041375)	ENSONIG00000002760	SLC12A4 (ENSONIG00000002766)	SLC6A2 (ENSONIG00000002785) #8	lpcat2 (ENSONIG00000002790) #9	mmp2 (ENSONIG00000002793) #10	ENSONIG00000033403	irx6a (ENSONIG00000030514) #11	irx5a (ENSONIG00000002806) #12	irx3a (ENSONIG00000002808) #14	FTO (ENSONIG00000034371) #15	aktip (ENSONIG00000002813) #17	CHD9 (ENSONIG00000002816) #19	TOX3 (ENSONIG00000002828) #21	sall1a (ENSONIG00000002831) #22	CYLD (ENSONIG00000002832) #23	nod2 (ENSONIG00000002837) #24	nkd1 (ENSONIG00000029445) #26	brd7 (ENSONIG00000002844) #27	adcy7 (ENSONIG00000002854) #28	tent4b (ENSONIG00000002860) #29	heatr3 (ENSONIG00000002862) #30	cnep1r1 (ENSONIG00000002867) #31	ENSONIG00000029863	ENSONIG00000020603	ENSONIG00000002868	sdr42e1 (ENSONIG00000002869)	wtip (ENSONIG00000002870)	gpib (ENSONIG00000002874)	GARRE1 (ENSONIG00000002881)
Midas cichlid	MODERN SPECIES	109	rpp25b (ENSACIG00000003689)	ENSACIG00000003698	SLC12A4 (ENSACIG00000003730)	ENSACIG00000003793	SLC6A2 (ENSACIG00000003813) #8	lpcat2 (ENSACIG00000003850) #9	mmp2 (ENSACIG00000003883) #10	irx6a (ENSACIG00000003916) #11	irx5a (ENSACIG00000003933) #12	ENSACIG00000003950	irx3a (ENSACIG00000003971) #14	FTO (ENSACIG00000004055) #15	ENSACIG00000004080	CHD9 (ENSACIG00000004097) #19	TOX3 (ENSACIG00000004213) #21	sall1a (ENSACIG00000004231) #22	ENSACIG00000004240	CYLD (ENSACIG00000004251) #23	nod2 (ENSACIG00000004283) #24	nkd1 (ENSACIG00000004309) #26	brd7 (ENSACIG00000004326) #27	adcy7 (ENSACIG00000004361) #28	tent4b (ENSACIG00000004518) #29	heatr3 (ENSACIG00000004545) #30	cnep1r1 (ENSACIG00000004627) #31	zgc:101040 (ENSACIG00000004648)	sdr42e1 (ENSACIG00000004653)	wtip (ENSACIG00000004662)	ENSACIG00000004698	gpib (ENSACIG00000004705)	GARRE1 (ENSACIG00000004748)
Pomacentridae	ANCESTRAL SPECIES	76	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407	ENSGT00940000154415.lb.a
Pomacentridae_A	ANCESTRAL SPECIES	71	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.b.a	ENSGT00390000012054.b.b.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210	ENSGT00940000160407
Amphiprion	ANCESTRAL SPECIES	89	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00940000180560	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.b.a	ENSGT00390000012054.b.b.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Clown anemonefish	MODERN SPECIES	1602															TOX3 (ENSAOCG00000014921) #21	sall1a (ENSAOCG00000002800) #22
Orange clownfish	MODERN SPECIES		ENSAPEG00000009305	SLC12A4 (ENSAPEG00000009329)	ENSAPEG00000009423	SLC6A2 (ENSAPEG00000009442) #8	lpcat2 (ENSAPEG00000009508) #9	mmp2 (ENSAPEG00000009591) #10	irx6a (ENSAPEG00000009645) #11	irx5a (ENSAPEG00000009694) #12	irx3a (ENSAPEG00000009734) #14	FTO (ENSAPEG00000009752) #15	ENSAPEG00000009763	aktip (ENSAPEG00000009782) #17	CHD9 (ENSAPEG00000009859) #19	TOX3 (ENSAPEG00000010124) #21	ENSAPEG00000010166	sall1a (ENSAPEG00000010179) #22	CYLD (ENSAPEG00000010186) #23	nod2 (ENSAPEG00000010272) #24	nkd1 (ENSAPEG00000010329) #26	ENSAPEG00000010452	brd7 (ENSAPEG00000010466) #27	adcy7 (ENSAPEG00000010481) #28	tent4b (ENSAPEG00000010518) #29	heatr3 (ENSAPEG00000010532) #30	cnep1r1 (ENSAPEG00000010621) #31	ENSAPEG00000010642	ENSAPEG00000010663	sdr42e1 (ENSAPEG00000010696)	wtip (ENSAPEG00000010702)	gpib (ENSAPEG00000010747)	GARRE1 (ENSAPEG00000010830)
Spiny chromis	MODERN SPECIES	1			SLC12A4 (ENSAPOG00000023576)	ENSAPOG00000023541	SLC6A2 (ENSAPOG00000023512) #8	lpcat2 (ENSAPOG00000023409) #9	mmp2 (ENSAPOG00000023303) #10	irx6a (ENSAPOG00000023226) #11	irx5a (ENSAPOG00000023201) #12	ENSAPOG00000023187	irx3a (ENSAPOG00000000662) #14	FTO (ENSAPOG00000023136) #15	aktip (ENSAPOG00000023117) #17	CHD9 (ENSAPOG00000023034) #19	TOX3 (ENSAPOG00000022795) #21	sall1a (ENSAPOG00000022764) #22	CYLD (ENSAPOG00000022732) #23	nod2 (ENSAPOG00000001020) #24	nkd1 (ENSAPOG00000022590) #26	brd7 (ENSAPOG00000022561) #27	adcy7 (ENSAPOG00000022420) #28	tent4b (ENSAPOG00000022376) #29	heatr3 (ENSAPOG00000022363) #30	cnep1r1 (ENSAPOG00000022325) #31	zgc:101040 (ENSAPOG00000022296)	sdr42e1 (ENSAPOG00000022272)	wtip (ENSAPOG00000022259)	gpib (ENSAPOG00000022181)	GARRE1 (ENSAPOG00000022098)	ss18l2 (ENSAPOG00000022048)	lsm14ab (ENSAPOG00000021998)
Bicolor damselfish	MODERN SPECIES	529														CHD9 (ENSSPAG00000021649) #19	TOX3 (ENSSPAG00000021626) #21	sall1a (ENSSPAG00000021615) #22
Tiger tail seahorse	MODERN SPECIES	132	ENSHCOG00000021100	SLC12A4 (ENSHCOG00000021097)	ENSHCOG00000021092	SLC6A2 (ENSHCOG00000021091) #8	lpcat2 (ENSHCOG00000021088) #9	mmp2 (ENSHCOG00000021086) #10	irx6a (ENSHCOG00000021083) #11	irx5a (ENSHCOG00000000880) #12	ENSHCOG00000000882	irx3b (ENSHCOG00000000885) #14	FTO (ENSHCOG00000000892) #15	aktip (ENSHCOG00000000899) #17	CHD9 (ENSHCOG00000000937) #19	TOX3 (ENSHCOG00000000964) #21	pfn2a (ENSHCOG00000000970)	sall1a (ENSHCOG00000000974) #22	CYLD (ENSHCOG00000000981) #23	nod2 (ENSHCOG00000000996) #24	nkd1 (ENSHCOG00000001000) #26	brd7 (ENSHCOG00000001006) #27	adcy7 (ENSHCOG00000001020) #28	tent4b (ENSHCOG00000001028) #29	heatr3 (ENSHCOG00000001036) #30	cnep1r1 (ENSHCOG00000001041) #31	zgc:101040 (ENSHCOG00000000046)	sdr42e1 (ENSHCOG00000001052)	wtip (ENSHCOG00000001056)	gpib (ENSHCOG00000001069)	GARRE1 (ENSHCOG00000001080)	ss18l2 (ENSHCOG00000001083)	ENSHCOG00000001089
Pinecone sodierfish	MODERN SPECIES	17	ENSMMDG00005024415	ENSMMDG00005024414	rpp25b (ENSMMDG00005024413)	ENSMMDG00005024411	SLC12A4 (ENSMMDG00005023724)	SLC6A2 (ENSMMDG00005023651) #8	lpcat2 (ENSMMDG00005023647) #9	mmp2 (ENSMMDG00005023645) #10	irx6a (ENSMMDG00005023640) #11	irx5a (ENSMMDG00005023639) #12	irx3a (ENSMMDG00005023637) #14	FTO (ENSMMDG00005023635) #15	aktip (ENSMMDG00005023605) #17	ENSMMDG00005021186 #19	TOX3 (ENSMMDG00005021113) #21	sall1a (ENSMMDG00005021112) #22	CYLD (ENSMMDG00005021080) #23	nod2 (ENSMMDG00005021064) #24	nkd1 (ENSMMDG00005021062) #26	brd7 (ENSMMDG00005021060) #27	adcy7 (ENSMMDG00005021034) #28	tent4b (ENSMMDG00005020799) #29	heatr3 (ENSMMDG00005020773) #30	cnep1r1 (ENSMMDG00005020763) #31	zgc:101040 (ENSMMDG00005020761)	sdr42e1 (ENSMMDG00005020759)	wtip (ENSMMDG00005020754)	gpib (ENSMMDG00005020599)	GARRE1 (ENSMMDG00005020552)	ss18l2 (ENSMMDG00005020537)	lsm14ab (ENSMMDG00005020532)
Cod	MODERN SPECIES	5	ENSGMOG00000014580	ENSGMOG00000003903	rpp25b (ENSGMOG00000003933)	ENSGMOG00000003940	ENSGMOG00000003971	SLC6A2 (ENSGMOG00000004034) #8	lpcat2 (ENSGMOG00000004073) #9	mmp2 (ENSGMOG00000004117) #10	irx6a (ENSGMOG00000033191) #11	irx5a (ENSGMOG00000004163) #12	irx3a (ENSGMOG00000023664) #14	FTO (ENSGMOG00000006006) #15	aktip (ENSGMOG00000006022) #17	ENSGMOG00000006040 #19	TOX3 (ENSGMOG00000006091) #21	sall1a (ENSGMOG00000006103) #22	CYLD (ENSGMOG00000006112) #23	nkd1 (ENSGMOG00000024303) #26	brd7 (ENSGMOG00000006152) #27	adcy7 (ENSGMOG00000006186) #28	tent4b (ENSGMOG00000006223) #29	heatr3 (ENSGMOG00000006246) #30	CNEP1R1 (ENSGMOG00000030441) #31	ENSGMOG00000014647	ENSGMOG00000027183	sdr42e1 (ENSGMOG00000020218)	wtip (ENSGMOG00000027007)	gpib (ENSGMOG00000014593)	ENSGMOG00000014545	ss18l2 (ENSGMOG00000032480)	LSM14A (ENSGMOG00000001919)
Osteoglossocephalai	ANCESTRAL SPECIES	89	ENSGT00980000201244	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00520000055620.B #16	ENSGT00940000158596.b.a	ENSGT00940000159483.a.b #12	ENSGT00940000161299.e.a #14	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT01040000241257	ENSGT00950000183202.a.b #18	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31
Clupeocephala	ANCESTRAL SPECIES	444														ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.mb
Euteleosteomorpha	ANCESTRAL SPECIES	119														ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.mb	ENSGT00940000154318.A.b	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00940000177974	ENSGT00390000001116	ENSGT00940000160214	ENSGT00940000158153.a	ENSGT00390000011055	ENSGT00940000168658	ENSGT00940000156088.c.b
Protacanthopterygii	ANCESTRAL SPECIES	29	ENSGT00940000158153.a.i	ENSGT00940000160214	ENSGT00390000001116	ENSGT00940000156429.t	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h	ENSGT00940000159496.l	ENSGT00390000011620.b.e	ENSGT00940000154415.lb.b	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b #22	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00940000157021	ENSGT00420000029847	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00550000075044	ENSGT00940000160513.b	ENSGT00940000164174	ENSGT00390000010852	ENSGT00390000005941.d	ENSGT00390000010382
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	816															ENSGT00940000158301.l.a #29	ENSGT00940000155938.b.b.a #22	ENSGT00950000183202.a.b.x.a #18	ENSGT00520000055620.B.g.a #16	ENSGT00940000159483.a.a.f #12	ENSGT00940000157021.q	ENSGT00390000009456.p	ENSGT00940000156469.a.a	ENSGT00940000156131.a.a.e
Huchen	DUPLICATION
Huchen	MODERN SPECIES	873															tent4b (ENSHHUG00000013050) #29	ENSHHUG00000013114 #22	SALL1 (ENSHHUG00000013117) #22	RBL2 (ENSHHUG00000013126) #18	rpgrip1l (ENSHHUG00000013343) #16	ENSHHUG00000013810	IRX5 (ENSHHUG00000013815) #12	ENSHHUG00000013818	ENSHHUG00000013837
Huchen	MODERN SPECIES	873														tent4b (ENSHHUG00000013050) #29	ENSHHUG00000013114 #22	SALL1 (ENSHHUG00000013117) #22	RBL2 (ENSHHUG00000013126) #18	rpgrip1l (ENSHHUG00000013343) #16	ENSHHUG00000013810	IRX5 (ENSHHUG00000013815) #12	ENSHHUG00000013818	ENSHHUG00000013837
Salmoninae_a	ANCESTRAL SPECIES	83	ENSGT00390000000873.a.b.g	ENSGT00940000159231.d	ENSGT00880000138051.a.f	ENSGT00940000158567.e	ENSGT00940000158293.lb	ENSGT00390000000972.e	ENSGT00940000157033.h.g	ENSGT00940000156088.c.b.g	ENSGT00390000001116.h	ENSGT00940000156429.t.a	ENSGT00940000159100.h.i	ENSGT00940000159496.l.i	ENSGT00390000011620.b.e.e	ENSGT00940000154415.lb.b.b	ENSGT00940000158301.l.a #29	ENSGT00940000155938.b.b.a #22	ENSGT00950000183202.a.b.x.a #18	ENSGT00520000055620.B.g.a #16	ENSGT00940000159483.a.a.f #12	ENSGT00940000157021.q	ENSGT00390000009456.p	ENSGT00940000156469.a.a	ENSGT00940000156131.a.a.e	ENSGT00940000160513.b.a	ENSGT00550000075044.c.a	ENSGT00390000010382.d	ENSGT00940000156003.l.a.q	ENSGT00940000162514	ENSGT00950000183011.c.a.b.f.c	ENSGT00390000003145.t	ENSGT00950000183093.B.b.c
Salmo	ANCESTRAL SPECIES	65	ENSGT00390000000873.a.b.g	ENSGT00940000159231.d	ENSGT00880000138051.a.f	ENSGT00940000158567.e	ENSGT00940000158293.lb	ENSGT00390000000972.e	ENSGT00940000157033.h.g	ENSGT00940000156088.c.b.g	ENSGT00390000001116.h	ENSGT00940000156429.t.a	ENSGT00940000159100.h.i	ENSGT00940000159496.l.i	ENSGT00390000011620.b.e.e	ENSGT00940000154415.lb.b.b	ENSGT00940000158301.l.a #29	ENSGT00940000155938.b.b.a #22	ENSGT00950000183202.a.b.x.a #18	ENSGT00520000055620.B.g.a #16	ENSGT00940000159483.a.a.f #12	ENSGT00940000157021.q	ENSGT00940000156469.a.a	ENSGT00940000156131.a.a.e	ENSGT00940000156482.c.h	ENSGT00550000075044.c.a	ENSGT00940000160513.b.a	ENSGT00390000010382.d	ENSGT00940000156003.l.a.q	ENSGT00940000162514	ENSGT00950000183011.c.a.b.f.c	ENSGT00390000003145.t	ENSGT00950000183093.B.b.c
Atlantic salmon	MODERN SPECIES	7	ST7 (ENSSSAG00000045880)	wnt2 (ENSSSAG00000051639)	asz1 (ENSSSAG00000051643)	cftr (ENSSSAG00000051689)	ENSSSAG00000052354	nup160 (ENSSSAG00000052407)	ENSSSAG00000113660	ENSSSAG00000052924	ENSSSAG00000055782	ENSSSAG00000055845	CHST8 (ENSSSAG00000061387)	ENSSSAG00000106661	ENSSSAG00000061512	LSM14A (ENSSSAG00000082344)	ENSSSAG00000061656 #29	ENSSSAG00000062773 #22	ENSSSAG00000116904	ENSSSAG00000062821 #18	ENSSSAG00000064592 #16	ENSSSAG00000083462	ENSSSAG00000109682	ENSSSAG00000066328 #12	ENSSSAG00000066231	ENSSSAG00000100300	ENSSSAG00000068156	ENSSSAG00000068162	ENSSSAG00000120751	ENSSSAG00000106237	ENSSSAG00000102267	ENSSSAG00000048641	ENSSSAG00000106537
River trout	MODERN SPECIES	8	wnt2 (ENSSTUG00000017200)	asz1 (ENSSTUG00000017165)	cftr (ENSSTUG00000008374)	CTTNBP2 (ENSSTUG00000008192)	nup160 (ENSSTUG00000008048)	frs2b (ENSSTUG00000008038)	PTPRB (ENSSTUG00000007393)	ZFC3H1 (ENSSTUG00000007266)	tbc1d15 (ENSSTUG00000005227)	CHST8 (ENSSTUG00000005152)	kctd15a (ENSSTUG00000005136)	ENSSTUG00000005087	lsm14aa (ENSSTUG00000005011)	GOLPH3 (ENSSTUG00000004973)	tent4b (ENSSTUG00000004864) #29	SALL1 (ENSSTUG00000004804) #22	RBL2 (ENSSTUG00000004200) #18	rpgrip1l (ENSSTUG00000003145) #16	IRX5 (ENSSTUG00000003101) #12	ANKRD27 (ENSSTUG00000002896)	SLC7A10 (ENSSTUG00000002705)	ENSSTUG00000002665	amfra (ENSSTUG00000033901)	LRRN3 (ENSSTUG00000033874)	immp2l (ENSSTUG00000033854)	bmt2 (ENSSTUG00000033838)	lamb1a (ENSSTUG00000025697)	lamb4 (ENSSTUG00000025200)	AMPD3 (ENSSTUG00000023365)	rnf141 (ENSSTUG00000023307)	ENSSTUG00000023303
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00390000000873.a.b.g	ENSGT00940000159231.d	ENSGT00880000138051.a.f	ENSGT00940000158567.e	ENSGT00940000158293.lb	ENSGT00390000000972.e	ENSGT00940000157033.h.g	ENSGT00940000156088.c.b.g	ENSGT00390000001116.h	ENSGT00940000156429.t.a	ENSGT00940000159100.h.i	ENSGT00940000159496.l.i	ENSGT00390000011620.b.e.e	ENSGT00940000154415.lb.b.b	ENSGT00940000158301.l.a #29	ENSGT00940000155938.b.b.a #22	ENSGT00950000183202.a.b.x.a #18	ENSGT00520000055620.B.g.a #16	ENSGT00940000159483.a.a.f #12	ENSGT00940000157021.q	ENSGT00390000009456.p	ENSGT00940000156469.a.a	ENSGT00940000156131.a.a.e	ENSGT00940000160513.b.a	ENSGT00550000075044.d	ENSGT00390000010382.d	ENSGT00940000156003.l.a.q	ENSGT00940000162514	ENSGT00950000183011.c.a.b.f.c	ENSGT00390000003145.t	ENSGT00950000183093.B.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00390000000873.a.b.g	ENSGT00940000159231.d	ENSGT00880000138051.a.f	ENSGT00940000158567.e	ENSGT00940000158293.lb	ENSGT00390000000972.e	ENSGT00940000157033.h.g	ENSGT00940000156088.c.b.g	ENSGT00390000001116.h	ENSGT00940000156429.t.a	ENSGT00940000159100.h.i	ENSGT00940000159496.l.i	ENSGT00390000011620.b.e.e	ENSGT00940000154415.lb.b.b	ENSGT00940000158301.l.a #29	ENSGT00940000155938.b.b.a #22	ENSGT00950000183202.a.b.x.a #18	ENSGT00520000055620.B.g.a #16	ENSGT00940000159483.a.a.f #12	ENSGT00940000157021.q	ENSGT00390000009456.p	ENSGT00940000156469.a.a	ENSGT00940000156131.a.a.e	ENSGT00940000160513.b.a	ENSGT00550000075044.d	ENSGT00390000010382.d	ENSGT00940000156003.l.a.q	ENSGT00940000162514	ENSGT00950000183011.c.a.b.f.c	ENSGT00390000003145.t	ENSGT00950000183093.B.b.c
Coho salmon	MODERN SPECIES	24	ENSOKIG00005016563	ST7 (ENSOKIG00005015517)	wnt2 (ENSOKIG00005015447)	cftr (ENSOKIG00005015381)	CTTNBP2 (ENSOKIG00005015326)	nup160 (ENSOKIG00005015245)	frs2b (ENSOKIG00005015212)	PTPRB (ENSOKIG00005014685)	ZFC3H1 (ENSOKIG00005014581)	TBC1D15 (ENSOKIG00005011765)	CHST8 (ENSOKIG00005011466)	KCTD15 (ENSOKIG00005011433)	ENSOKIG00005011406	LSM14A (ENSOKIG00005011378)	TENT4B (ENSOKIG00005011314) #29	SALL1 (ENSOKIG00005011299) #22	RBL2 (ENSOKIG00005011148) #18	rpgrip1l (ENSOKIG00005009469) #16	IRX5 (ENSOKIG00005009348) #12	ANKRD27 (ENSOKIG00005009231)	faap24 (ENSOKIG00005009164)	SLC7A10 (ENSOKIG00005008505)	ENSOKIG00005008423	LRRN3 (ENSOKIG00005008415)	immp2l (ENSOKIG00005008371)	BMT2 (ENSOKIG00005008359)	lamb1a (ENSOKIG00005007399)	lamb4 (ENSOKIG00005007077)	AMPD3 (ENSOKIG00005006881)	RNF141 (ENSOKIG00005049179)	DBX1 (ENSOKIG00005049177)
Chinook salmon	MODERN SPECIES	30	wnt2 (ENSOTSG00005030570)	asz1 (ENSOTSG00005030569)	cftr (ENSOTSG00005029858)	CTTNBP2 (ENSOTSG00005029843)	nup160 (ENSOTSG00005029842)	frs2b (ENSOTSG00005029839)	PTPRB (ENSOTSG00005029780)	ZFC3H1 (ENSOTSG00005029775)	tbc1d15 (ENSOTSG00005029358)	ENSOTSG00005029352	CHST8 (ENSOTSG00005029350)	kctd15a (ENSOTSG00005029348)	ENSOTSG00005029341	lsm14aa (ENSOTSG00005029338)	tent4b (ENSOTSG00005029334) #29	SALL1 (ENSOTSG00005029332) #22	RBL2 (ENSOTSG00005029192) #18	rpgrip1l (ENSOTSG00005028387) #16	IRX5 (ENSOTSG00005028373) #12	ANKRD27 (ENSOTSG00005028370)	faap24 (ENSOTSG00005028368)	SLC7A10 (ENSOTSG00005027957)	ENSOTSG00005027952	LRRN3 (ENSOTSG00005027951)	immp2l (ENSOTSG00005027949)	bmt2 (ENSOTSG00005027947)	lamb1a (ENSOTSG00005015167)	lamb4 (ENSOTSG00005015132)	AMPD3 (ENSOTSG00005014953)	rnf141 (ENSOTSG00005014950)	dbx1b (ENSOTSG00005014949)
Rainbow trout	MODERN SPECIES		asz1 (ENSOMYG00000021664)	ENSOMYG00000073421	cftr (ENSOMYG00000020983)	ENSOMYG00000020700	ENSOMYG00000020618	ENSOMYG00000020576	ENSOMYG00000020357	ENSOMYG00000020203	ENSOMYG00000061687	ENSOMYG00000017733	CHST8 (ENSOMYG00000017454)	ENSOMYG00000017427	ENSOMYG00000017384	LSM14A (ENSOMYG00000017365)	ENSOMYG00000017224 #29	ENSOMYG00000017212 #22	ENSOMYG00000016162 #18	ENSOMYG00000059179	ENSOMYG00000015024 #16	ENSOMYG00000068911	ENSOMYG00000014902 #12	ENSOMYG00000014824	faap24 (ENSOMYG00000014722)	ENSOMYG00000014631	ENSOMYG00000071081	ENSOMYG00000014603	ENSOMYG00000062053	ENSOMYG00000014599	ENSOMYG00000014586	ENSOMYG00000063722	ENSOMYG00000014559
Salmoninae	ANCESTRAL SPECIES	91	ENSGT00940000158153.a.i.a	ENSGT00940000160214	ENSGT00390000001116.g	ENSGT00940000156429.t.b	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h.j	ENSGT00940000159496.l.j	ENSGT00390000011620.b.e.f	ENSGT00940000154415.lb.b.a	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l.b #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b.b #22	ENSGT00950000183202.a.b.x.b #18	ENSGT00520000055620.B.g.b #16	ENSGT00940000159483.a.a.e #12	ENSGT00940000157021.r	ENSGT00420000029847	ENSGT00390000009456.o	ENSGT00940000156469.a.b	ENSGT00550000075019	ENSGT00940000156131.a.a.f	ENSGT00940000156482.c	ENSGT00940000160513.b.b	ENSGT00940000164174	ENSGT00550000075044.c.b	ENSGT00390000010852	ENSGT00390000005941.d
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000158153.a.i.a	ENSGT00940000160214	ENSGT00390000001116.g	ENSGT00940000156429.t.b	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h.j	ENSGT00940000159496.l.j	ENSGT00390000011620.b.e.f	ENSGT00940000154415.lb.b.a	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l.b #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b.b #22	ENSGT00950000183202.a.b.x.b #18	ENSGT00520000055620.B.g.b #16	ENSGT00940000159483.a.a.e #12	ENSGT00940000157021.r	ENSGT00420000029847	ENSGT00390000009456.o	ENSGT00940000156469.a.b	ENSGT00550000075019	ENSGT00940000156131.a.a.f	ENSGT00940000156482.c	ENSGT00940000160513.b.b	ENSGT00940000164174	ENSGT00550000075044.c.b	ENSGT00390000010852	ENSGT00390000005941.d
Oncorhynchus	ANCESTRAL SPECIES	10	ENSGT00940000158153.a.i.a	ENSGT00940000160214	ENSGT00390000001116.g	ENSGT00940000156429.t.b	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h.j	ENSGT00940000159496.l.j	ENSGT00390000011620.b.e.f	ENSGT00940000154415.lb.b.a	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l.b #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b.b #22	ENSGT00950000183202.a.b.x.b #18	ENSGT00520000055620.B.g.b #16	ENSGT00940000159483.a.a.e #12	ENSGT00940000157021.r	ENSGT00420000029847	ENSGT00390000009456.o	ENSGT00940000156469.a.b	ENSGT00550000075019	ENSGT00940000156131.a.a.f	ENSGT00940000156482.c	ENSGT00940000160513.b.b	ENSGT00940000164174	ENSGT00390000010852	ENSGT00390000005941.d	ENSGT00390000010382.c
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000011831	ENSOMYG00000011715	ENSOMYG00000011036	ENSOMYG00000010750	ENSOMYG00000010685	CHST8 (ENSOMYG00000010677)	KCTD15 (ENSOMYG00000010672)	ENSOMYG00000010647	ENSOMYG00000063934	gpia (ENSOMYG00000010468)	hsd17b2 (ENSOMYG00000010229)	mphosph6 (ENSOMYG00000010223)	ENSOMYG00000010133 #29	ENSOMYG00000010055 #25	ENSOMYG00000058232	ENSOMYG00000010051 #22	ENSOMYG00000009205 #18	ENSOMYG00000053257	ENSOMYG00000008919 #12	ENSOMYG00000061906	ENSOMYG00000008891	ENSOMYG00000008764	faap24 (ENSOMYG00000008686)	ENSOMYG00000008646	ENSOMYG00000008091	ENSOMYG00000007192	amfra (ENSOMYG00000007104)	ENSOMYG00000006835	ENSOMYG00000006825	znf277 (ENSOMYG00000006558)	TMEM168 (ENSOMYG00000006022)
Oncorhynchus_a	ANCESTRAL SPECIES	5	ENSGT00940000156088.c.b.h	ENSGT00940000160214	ENSGT00390000001116.g	ENSGT00940000156429.t.b	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h.j	ENSGT00940000159496.l.j	ENSGT00390000011620.b.e.f	ENSGT00940000154415.lb.b.a	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l.b #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b.b #22	ENSGT00950000183202.a.b.x.b #18	ENSGT00520000055620.B.g.b #16	ENSGT00940000159483.a.a.e #12	ENSGT00940000157021.r	ENSGT00420000029847	ENSGT00390000009456.o	ENSGT00940000156469.a.b	ENSGT00550000075019	ENSGT00940000156131.a.a.f	ENSGT00940000156482.c	ENSGT00940000160513.b.b	ENSGT00940000164174	ENSGT00390000010852	ENSGT00390000005941.d	ENSGT00390000010382.c
Chinook salmon	MODERN SPECIES	10	PTPRB (ENSOTSG00005008974)	LGR5 (ENSOTSG00005008966)	ENSOTSG00005008963	tbc1d15 (ENSOTSG00005006836)	tph2 (ENSOTSG00005006563)	ENSOTSG00005006560	CHST8 (ENSOTSG00005006558)	kctd15a (ENSOTSG00005006555)	ENSOTSG00005040169	lsm14aa (ENSOTSG00005040167)	gpia (ENSOTSG00005039480)	hsd17b2 (ENSOTSG00005039471)	mphosph6 (ENSOTSG00005039468)	tent4b (ENSOTSG00005039351) #29	SNX20 (ENSOTSG00005039338) #25	SALL1 (ENSOTSG00005039333) #22	RBL2 (ENSOTSG00005039041) #18	IRX5 (ENSOTSG00005039029) #12	ANKRD27 (ENSOTSG00005038903)	ENSOTSG00005038876	faap24 (ENSOTSG00005038871)	SLC7A10 (ENSOTSG00005038869)	DUS2 (ENSOTSG00005038831)	ENSOTSG00005038820	amfra (ENSOTSG00005038786)	ENSOTSG00005038781	LRRN3 (ENSOTSG00005038779)	wt1a (ENSOTSG00005038515)	ENSOTSG00005038514	DEPDC7 (ENSOTSG00005038513)	hipk3a (ENSOTSG00005038512)
Coho salmon	MODERN SPECIES	14	ENSOKIG00005046559	ENSOKIG00005046523	tbc1d15 (ENSOKIG00005045662)	tph2 (ENSOKIG00005045079)	ENSOKIG00005045014	CHST8 (ENSOKIG00005045003)	ENSOKIG00005044996	KCTD15 (ENSOKIG00005044989)	ENSOKIG00005044973	lsm14aa (ENSOKIG00005044921)	gpia (ENSOKIG00005040066)	hsd17b2 (ENSOKIG00005039793)	mphosph6 (ENSOKIG00005039772)	ENSOKIG00005039482 #29	SNX20 (ENSOKIG00005039443) #25	SALL1 (ENSOKIG00005039429) #22	RBL2 (ENSOKIG00005039040) #18	ENSOKIG00005038970 #16	IRX5 (ENSOKIG00005038960) #12	ANKRD27 (ENSOKIG00005038857)	ENSOKIG00005038784	faap24 (ENSOKIG00005038774)	SLC7A10 (ENSOKIG00005038586)	DUS2 (ENSOKIG00005037660)	ENSOKIG00005037588	amfra (ENSOKIG00005037562)	ENSOKIG00005037550	ENSOKIG00005037540	ENSOKIG00005037513	znf277 (ENSOKIG00005036447)	TMEM168 (ENSOKIG00005036370)
Salmo	ANCESTRAL SPECIES	45	ENSGT00940000158153.a.i.a	ENSGT00940000160214	ENSGT00390000001116.g	ENSGT00940000156429.t.b	ENSGT00950000182885.A.b	ENSGT00940000154318.A.b	ENSGT00940000159100.h.j	ENSGT00940000159496.l.j	ENSGT00390000011620.b.e.f	ENSGT00940000154415.lb.b.a	ENSGT00390000000707.y.a	ENSGT00940000160204	ENSGT00390000009212	ENSGT00940000158301.l.b #29	ENSGT00530000063759.a #25	ENSGT00940000155938.b.b.b #22	ENSGT00950000183202.a.b.x.b #18	ENSGT00520000055620.B.g.b #16	ENSGT00940000159483.a.a.e #12	ENSGT00940000157021.r	ENSGT00420000029847	ENSGT00390000009456.o	ENSGT00940000156469.a.b	ENSGT00550000075019	ENSGT00940000156131.a.a.f	ENSGT00940000156482.c.g	ENSGT00940000160513.b.b	ENSGT00550000075044.c.b	ENSGT00390000010852	ENSGT00390000005941.d	ENSGT00390000010382.c
River trout	MODERN SPECIES	37	ENSSTUG00000035125	tbc1d15 (ENSSTUG00000031508)	tph2 (ENSSTUG00000030527)	ENSSTUG00000028670	CHST8 (ENSSTUG00000028629)	ENSSTUG00000028614	CHST8 (ENSSTUG00000028574)	kctd15a (ENSSTUG00000028563)	ENSSTUG00000028474	lsm14aa (ENSSTUG00000028457)	gpia (ENSSTUG00000027700)	hsd17b2 (ENSSTUG00000027667)	mphosph6 (ENSSTUG00000027656)	TENT4B (ENSSTUG00000027589) #29	SNX20 (ENSSTUG00000027582) #25	SALL1 (ENSSTUG00000027572) #22	RBL2 (ENSSTUG00000027505) #18	IRX5 (ENSSTUG00000027497) #12	ANKRD27 (ENSSTUG00000027413)	ENSSTUG00000027377	faap24 (ENSSTUG00000027369)	SLC7A10 (ENSSTUG00000027339)	DUS2 (ENSSTUG00000027116)	ENSSTUG00000027098	amfra (ENSSTUG00000026580)	LRRN3 (ENSSTUG00000026556)	ENSSTUG00000026527	znf277 (ENSSTUG00000026168)	TMEM168 (ENSSTUG00000026146)	bmt2 (ENSSTUG00000026133)	ENSSTUG00000026124
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000065309	ENSSSAG00000065163	ENSSSAG00000107405	ENSSSAG00000065133	ENSSSAG00000059489	ENSSSAG00000058616	ENSSSAG00000058580	CHST8 (ENSSSAG00000058555)	KCTD15 (ENSSSAG00000091155)	ENSSSAG00000058489	lsm14aa (ENSSSAG00000058467)	GPI (ENSSSAG00000055699)	hsd17b2 (ENSSSAG00000103360)	ENSSSAG00000055348 #29	ENSSSAG00000120378	ENSSSAG00000055327 #22	ENSSSAG00000055151 #18	ENSSSAG00000055119 #16	ENSSSAG00000055101 #12	ENSSSAG00000054852	ENSSSAG00000099467	ENSSSAG00000054761	faap24 (ENSSSAG00000111213)	ENSSSAG00000090580	ENSSSAG00000051983	ENSSSAG00000082477	amfra (ENSSSAG00000051806)	LRRN3 (ENSSSAG00000089961)	immp2l (ENSSSAG00000106762)	znf277 (ENSSSAG00000049782)	TMEM168 (ENSSSAG00000087100)
Huchen	MODERN SPECIES	890				ENSHHUG00000029069	ENSHHUG00000029067	ENSHHUG00000029063	CHST8 (ENSHHUG00000029061)	ENSHHUG00000029060	kctd15a (ENSHHUG00000029052)	ENSHHUG00000029013	lsm14aa (ENSHHUG00000029006)	gpia (ENSHHUG00000028573)	hsd17b2 (ENSHHUG00000028570)	mphosph6 (ENSHHUG00000028558)	TENT4B (ENSHHUG00000028550) #29	SALL1 (ENSHHUG00000028547) #22	SNX20 (ENSHHUG00000028543) #25	RBL2 (ENSHHUG00000028514) #18	ENSHHUG00000028511 #16	IRX5 (ENSHHUG00000028510) #12	ANKRD27 (ENSHHUG00000028469)	ENSHHUG00000028368	faap24 (ENSHHUG00000028357)	SLC7A10 (ENSHHUG00000028314)	DUS2 (ENSHHUG00000028273)	ENSHHUG00000028264	amfra (ENSHHUG00000028056)
Northern pike	MODERN SPECIES	18	ENSELUG00000018292	ENSELUG00000018239	ADA2 (ENSELUG00000018180)	GALNT8 (ENSELUG00000000739)	ribc2 (ENSELUG00000018103)	CHST8 (ENSELUG00000018093)	ENSELUG00000025420	kctd15a (ENSELUG00000018083)	ENSELUG00000018066	lsm14aa (ENSELUG00000018038)	gpia (ENSELUG00000017973)	hsd17b2 (ENSELUG00000017899)	mphosph6 (ENSELUG00000017839)	tent4b (ENSELUG00000017815) #29	SNX20 (ENSELUG00000017791) #25	SALL1 (ENSELUG00000017774) #22	RBL2 (ENSELUG00000017736) #18	rpgrip1l (ENSELUG00000017693) #16	ENSELUG00000017658	ENSELUG00000017634	IRX5 (ENSELUG00000017608) #12	ANKRD27 (ENSELUG00000017570)	ENSELUG00000031328	ENSELUG00000017494	faap24 (ENSELUG00000028712)	SLC7A10 (ENSELUG00000001270)	DUS2 (ENSELUG00000017339)	ENSELUG00000017288	amfra (ENSELUG00000017270)	immp2l (ENSELUG00000017229)	LRRN3 (ENSELUG00000024807)
Acanthomorphata	ANCESTRAL SPECIES	64	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Euacanthomorphacea	ANCESTRAL SPECIES	29	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Percomorphaceae	ANCESTRAL SPECIES	27	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Percomorphaceae_B	ANCESTRAL SPECIES	12	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT01030000235333	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Eupercaria	ANCESTRAL SPECIES	14	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b	ENSGT00390000003210
Eupecaria_A	ANCESTRAL SPECIES	15	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000177581	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b
Eupecaria_B	ANCESTRAL SPECIES	15	ENSGT00950000183129.b.b.a.a	ENSGT00940000154201.a.b.t	ENSGT00390000002564.b.c	ENSGT00940000160211	ENSGT00940000157672	ENSGT00940000158960 #8	ENSGT01030000234574.A.b.a #9	ENSGT00940000158511 #10	ENSGT00940000159909 #11	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00390000017730 #15	ENSGT00390000010125 #17	ENSGT00940000155706 #19	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00940000158043 #21	ENSGT00940000155938.b.a #22	ENSGT00390000018123.a.a #23	ENSGT00940000160934 #24	ENSGT00440000033589.c #26	ENSGT00950000183170.a #27	ENSGT00940000159096 #28	ENSGT00940000158301 #29	ENSGT00390000012529 #30	ENSGT00390000008576 #31	ENSGT00390000012054.b.d.a	ENSGT00390000012054.b.c	ENSGT00940000158070	ENSGT00940000160924	ENSGT00390000000707.y.b
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00640000091774.a.a	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000176877	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00980000201244	ENSGT00940000159483.a.a #12	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159100.h	ENSGT00940000159496.l	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00940000177974	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00640000091774.a.b	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000176877	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00980000201244	ENSGT00940000159483.a.a #12	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159100.h	ENSGT00940000159496.l	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000167873
European seabass	MODERN SPECIES	19	ENSDLAG00005014226	ENSDLAG00005027356	ENSDLAG00005022125	ENSDLAG00005033058	PHF21A (ENSDLAG00005030997)	DGKZ (ENSDLAG00005003086)	mdkb (ENSDLAG00005007027)	ambra1b (ENSDLAG00005016487)	ENSDLAG00005031649	ENSDLAG00005015137	rpgrip1l (ENSDLAG00005017101) #16	ENSDLAG00005003030	ENSDLAG00005029375	ENSDLAG00005030892 #12	ENSDLAG00005014447 #18	ENSDLAG00005014855 #22	ENSDLAG00005031693 #25	hsd17b2 (ENSDLAG00005014913)	gpia (ENSDLAG00005014948)	lsm14aa (ENSDLAG00005026991)	ENSDLAG00005027638	CHST8 (ENSDLAG00005005479)	KCTD15 (ENSDLAG00005020257)	ENSDLAG00005029026	ENSDLAG00005032741	ENSDLAG00005003344	ENSDLAG00005027238	ENSDLAG00005004304	ENSDLAG00005017752	ENSDLAG00005016512	ENSDLAG00005029472
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00640000091774.a.a	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000176877	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00940000163250.A.b	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00940000178960	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972
Carangaria	ANCESTRAL SPECIES	6	ENSGT00640000091774.a.a	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000164249.b.a.b.b	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00940000163250.A.b	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000167873
Carangaria_A	ANCESTRAL SPECIES		ENSGT00640000091774.a.a	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000164249.b.a.b.b	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00940000163250.A.b	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972	ENSGT00940000167873
Seriola	ANCESTRAL SPECIES	133				ENSGT00940000157033.h	ENSGT00940000156088.c.b	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00940000163250.A.b	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116
Greater amberjack	MODERN SPECIES	132				frs2b (ENSSDUG00000001396)	PTPRB (ENSSDUG00000001360)	PHF21A (ENSSDUG00000001173)	DGKZ (ENSSDUG00000001108)	mdkb (ENSSDUG00000001096)	ENSSDUG00000001083	ambra1b (ENSSDUG00000000986)	NOX5 (ENSSDUG00000000921)	rpgrip1l (ENSSDUG00000000904) #16	IRX5 (ENSSDUG00000000867) #12	ENSSDUG00000000844	RBL2 (ENSSDUG00000000771) #18	SALL1 (ENSSDUG00000000748) #22	SNX20 (ENSSDUG00000000736) #25	mphosph6 (ENSSDUG00000000703)	hsd17b2 (ENSSDUG00000000619)	gpia (ENSSDUG00000000541)	lsm14aa (ENSSDUG00000000495)	ENSSDUG00000000429	kctd15a (ENSSDUG00000000401)	CHST8 (ENSSDUG00000000397)	tph2 (ENSSDUG00000000350)	tbc1d15 (ENSSDUG00000000277)	ZFC3H1 (ENSSDUG00000000244)	PRDM11 (ENSSDUG00000000235)	ENSSDUG00000000211	ENSSDUG00000000204	ENSSDUG00000000167
Yellowtail amberjack	MODERN SPECIES	3276													irx5b (ENSSLDG00000014373) #12	ENSSLDG00000014397	RBL2 (ENSSLDG00000014424) #18	ENSSLDG00000014465 #22	SNX20 (ENSSLDG00000014476) #25	mphosph6 (ENSSLDG00000014502)	hsd17b2 (ENSSLDG00000014489)	gpia (ENSSLDG00000014526)	lsm14aa (ENSSLDG00000014548)	ENSSLDG00000014574	KCTD15 (ENSSLDG00000014606)
Barramundi perch	MODERN SPECIES	8											KCTD15 (ENSLCAG00010026433)	ENSLCAG00010026432	ENSLCAG00010026430	gpia (ENSLCAG00010026262)	RBL2 (ENSLCAG00010026080) #18	SALL1 (ENSLCAG00010026071) #22	SNX20 (ENSLCAG00010026070) #25	mphosph6 (ENSLCAG00010026067)	hsd17b2 (ENSLCAG00010026066)	ENSLCAG00010026065	ENSLCAG00010026064	IRX5 (ENSLCAG00010026062) #12	ENSLCAG00010026059 #16	NOX5 (ENSLCAG00010026055)	ENSLCAG00010026046
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00950000183004.a.b.b	ENSGT00640000091774.a.b	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000176877	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00940000178960	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00720000108833	ENSGT00950000183004.a.b.b	ENSGT00640000091774.a.b	ENSGT00990000203615.a.a.a.a	ENSGT00730000111696.b	ENSGT00940000159837	ENSGT00940000156124.c.b	ENSGT00940000156152.e.a.b	ENSGT00390000007640.b.b	ENSGT00940000160394.b	ENSGT00390000016223	ENSGT00940000162591	ENSGT00520000055620.B #16	ENSGT00940000159483.a.a #12	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00390000011620.b.e	ENSGT00940000159496.l	ENSGT00940000159100.h	ENSGT00940000178960	ENSGT00950000182885.A.b	ENSGT00940000156429	ENSGT00390000001116	ENSGT00940000156088.c.b	ENSGT00940000157033.h	ENSGT00390000000972
Climbing perch	MODERN SPECIES	19	ENSATEG00000013277	ENSATEG00000013296	ENSATEG00000013321	ENSATEG00000029658	ENSATEG00000013354	PHF21A (ENSATEG00000013406)	DGKZ (ENSATEG00000013496)	mdkb (ENSATEG00000013643)	ENSATEG00000027168	ENSATEG00000013658	ambra1b (ENSATEG00000013668)	ENSATEG00000013689	rpgrip1l (ENSATEG00000013724) #16	ENSATEG00000013755 #12	ENSATEG00000013794 #18	ENSATEG00000013859 #22	ENSATEG00000028232 #25	mphosph6 (ENSATEG00000013914)	hsd17b2 (ENSATEG00000029385)	gpia (ENSATEG00000013944)	lsm14aa (ENSATEG00000014002)	ENSATEG00000014024	KCTD15 (ENSATEG00000014037)	CHST8 (ENSATEG00000014050)	ENSATEG00000027634	ENSATEG00000014127	ENSATEG00000015322	ENSATEG00000015391	ENSATEG00000015475	ENSATEG00000015577	ENSATEG00000015619
Zig-zag eel	MODERN SPECIES	20	ENSMAMG00000015401	ENSMAMG00000015415	ENSMAMG00000015445	ENSMAMG00000024273	ENSMAMG00000015482	ENSMAMG00000027463	PHF21A (ENSMAMG00000015525)	DGKZ (ENSMAMG00000015557)	mdkb (ENSMAMG00000015628)	ENSMAMG00000015636	ambra1b (ENSMAMG00000015652)	ENSMAMG00000015722	rpgrip1l (ENSMAMG00000015755) #16	ENSMAMG00000015781 #12	ENSMAMG00000015799 #18	ENSMAMG00000027445 #22	ENSMAMG00000015874	ENSMAMG00000015884 #25	mphosph6 (ENSMAMG00000015895)	hsd17b2 (ENSMAMG00000015920)	gpia (ENSMAMG00000015981)	lsm14aa (ENSMAMG00000016088)	ENSMAMG00000016141	KCTD15 (ENSMAMG00000016159)	ENSMAMG00000016275	ENSMAMG00000021317	ENSMAMG00000021320	ENSMAMG00000021327	ENSMAMG00000021340	ENSMAMG00000021345	ENSMAMG00000021354
Pinecone sodierfish	MODERN SPECIES	20	api5 (ENSMMDG00005009845)	ENSMMDG00005009865	ENSMMDG00005009867	ENSMMDG00005009869	ENSMMDG00005009870	PRDM11 (ENSMMDG00005009874)	PHF21A (ENSMMDG00005009902)	DGKZ (ENSMMDG00005010818)	mdkb (ENSMMDG00005018740)	ENSMMDG00005018745	ambra1b (ENSMMDG00005018757)	NOX5 (ENSMMDG00005018806)	rpgrip1l (ENSMMDG00005019013) #16	IRX5 (ENSMMDG00005019299) #12	RBL2 (ENSMMDG00005019300) #18	SALL1 (ENSMMDG00005019302) #22	SNX20 (ENSMMDG00005019304) #25	mphosph6 (ENSMMDG00005019307)	hsd17b2 (ENSMMDG00005019308)	gpia (ENSMMDG00005019325)	lsm14aa (ENSMMDG00005019605)	ENSMMDG00005019608	KCTD15 (ENSMMDG00005019610)	CHST8 (ENSMMDG00005019614)	ENSMMDG00005019618	tph2 (ENSMMDG00005019624)	tbc1d15 (ENSMMDG00005019721)	ZFC3H1 (ENSMMDG00005020158)	ENSMMDG00005020172	june (ENSMMDG00005020178)	PTPRB (ENSMMDG00005020188)
Cod	MODERN SPECIES	22	ENSGMOG00000011446	ENSGMOG00000023705	ENSGMOG00000001828	ENSGMOG00000026172	ENSGMOG00000013634	ENSGMOG00000028529	MLKL (ENSGMOG00000013621)	ENSGMOG00000013609	GLG1 (ENSGMOG00000013582)	ENSGMOG00000007240	ENSGMOG00000016555	ENSGMOG00000026619	ENSGMOG00000016032	ENSGMOG00000022184 #16	ENSGMOG00000018154 #18	ENSGMOG00000018064 #22	ENSGMOG00000036034 #25	ENSGMOG00000036393	ENSGMOG00000018013	cstpp1 (ENSGMOG00000018002)	ENSGMOG00000025489	cry2 (ENSGMOG00000016049)	zgc:101566 (ENSGMOG00000029067)	shank2b (ENSGMOG00000025746)	ENSGMOG00000012797	gal (ENSGMOG00000018363)	ppp6r3 (ENSGMOG00000016852)	lrp5 (ENSGMOG00000016796)	ENSGMOG00000026830	ENSGMOG00000032835	ENSGMOG00000017080
Otomorpha	ANCESTRAL SPECIES	485													ENSGT00550000075019	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b
Otophysi	ANCESTRAL SPECIES	13	ENSGT00390000018903.n	ENSGT00940000155213.y	ENSGT00940000166064	ENSGT00940000157389	ENSGT00940000161531.a.b	ENSGT00940000157021	ENSGT00740000115898	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00550000075019	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00940000166219	ENSGT00940000155323.a	ENSGT00940000155870.a.b	ENSGT00940000158267	ENSGT00390000017625.l	ENSGT00940000162754	ENSGT00390000015299.a.a.b	ENSGT00390000007623.d	ENSGT00940000159545	ENSGT00940000156257
Characiphysae	ANCESTRAL SPECIES	6	ENSGT00940000154098.a.e	ENSGT00390000008708.h.a	ENSGT00940000153525.i.b	ENSGT00390000014507.a.a	ENSGT00390000002915	ENSGT00390000000903.a.j	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011239.i	ENSGT00940000158160	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00940000166219	ENSGT00960000192328	ENSGT00940000155323.a	ENSGT00940000155870.a.b	ENSGT00940000158267	ENSGT00390000017625.l	ENSGT00940000162754	ENSGT00390000015299.a.a.b	ENSGT00390000007623.d	ENSGT00940000159545
Characiphysae_b	ANCESTRAL SPECIES	5	ENSGT00940000154098.a.e	ENSGT00390000008708.g	ENSGT00940000153525.i.b	ENSGT00390000002915	ENSGT00390000000903.a.j	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011239.i	ENSGT00940000158160	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00940000161299.f #14	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00940000166219	ENSGT00960000192328	ENSGT00940000155323.a	ENSGT00940000155870.a.b	ENSGT00940000158267	ENSGT00390000017625.l	ENSGT00940000162754	ENSGT00390000015299.a.a.b	ENSGT00390000007623.d	ENSGT00940000159545
Characoidei	ANCESTRAL SPECIES	4	ENSGT00940000153525.i.b	ENSGT00390000014507.a.a	ENSGT00390000002915	ENSGT00390000000903.a.j	ENSGT01050000244841.A.b.b.a.b	ENSGT00390000011239.i	ENSGT00940000158160	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00940000159483.a.b #12	ENSGT00940000161299.f #14	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00940000166219	ENSGT00940000155323.a	ENSGT00940000155870.a.b	ENSGT00940000158267	ENSGT00390000017625.l	ENSGT00940000162754	ENSGT00390000015299.a.a.b	ENSGT00390000007623.d	ENSGT00940000159545	ENSGT00940000156257
Red-bellied piranha	MODERN SPECIES	65	slc25a3b (ENSPNAG00000004687)	golt1bb (ENSPNAG00000029944)	ldhbb (ENSPNAG00000029950)	slc35b4 (ENSPNAG00000029957)	chchd3b (ENSPNAG00000029963)	GPR22 (ENSPNAG00000029970)	hbp1 (ENSPNAG00000029977)	PRKAR2B (ENSPNAG00000029987)	DUS2 (ENSPNAG00000030006)	ENSPNAG00000030021	amfra (ENSPNAG00000030029)	irx5b (ENSPNAG00000030034) #12	ENSPNAG00000030036	rpgrip1l (ENSPNAG00000030041) #16	RBL2 (ENSPNAG00000030051) #18	SALL1 (ENSPNAG00000007442) #22	SNX20 (ENSPNAG00000007443) #25	mphosph6 (ENSPNAG00000005322)	hsd17b2 (ENSPNAG00000000200)	gpia (ENSPNAG00000007451)	lsm14aa (ENSPNAG00000000205)	ENSPNAG00000005479	KIF21A (ENSPNAG00000007477)	slc2a13b (ENSPNAG00000000226)	lrrk2 (ENSPNAG00000007497)
Mexicana tetra	MODERN SPECIES	23	ANO3 (ENSAMXG00000017808)	slc5a12 (ENSAMXG00000017755)	FIBIN (ENSAMXG00000025115)	ENSAMXG00000036887	spi1a (ENSAMXG00000017734)	CLPX (ENSAMXG00000017730)	rsph3 (ENSAMXG00000033650)	lrrk2 (ENSAMXG00000017727)	slc2a13b (ENSAMXG00000017725)	KIF21A (ENSAMXG00000017720)	ENSAMXG00000017711	irx5b (ENSAMXG00000029615) #12	irx3b (ENSAMXG00000031879) #14	rpgrip1l (ENSAMXG00000017705) #16	RBL2 (ENSAMXG00000017704) #18	SALL1 (ENSAMXG00000017702) #22	SNX20 (ENSAMXG00000017699) #25	mphosph6 (ENSAMXG00000033422)	hsd17b2 (ENSAMXG00000038489)	gpia (ENSAMXG00000017692)	lsm14aa (ENSAMXG00000017690)	amfra (ENSAMXG00000017688)	ENSAMXG00000017687	DUS2 (ENSAMXG00000017685)	PRKAR2B (ENSAMXG00000017681)	hbp1 (ENSAMXG00000017678)	ENSAMXG00000032491	GPR22 (ENSAMXG00000017676)	slc35b4 (ENSAMXG00000017675)	golt1bb (ENSAMXG00000017671)	ldhbb (ENSAMXG00000034429)
Electric eel	MODERN SPECIES	67	tmpob (ENSEEEG00000004467)	ENSEEEG00000004466	ldhbb (ENSEEEG00000004444)	golt1bb (ENSEEEG00000004438)	slc35b4 (ENSEEEG00000004434)	GPR22 (ENSEEEG00000004431)	hbp1 (ENSEEEG00000004429)	PRKAR2B (ENSEEEG00000004428)	DUS2 (ENSEEEG00000004427)	ENSEEEG00000004424	amfra (ENSEEEG00000004421)	irx5b (ENSEEEG00000004420) #12	irx3b (ENSEEEG00000004419) #14	rpgrip1l (ENSEEEG00000004415) #16	RBL2 (ENSEEEG00000004200) #18	SALL1 (ENSEEEG00000004194) #22	SNX20 (ENSEEEG00000004192) #25	mphosph6 (ENSEEEG00000004190)	hsd17b2 (ENSEEEG00000004186)	gpia (ENSEEEG00000003975)	lsm14aa (ENSEEEG00000003953)	ENSEEEG00000003952	ENSEEEG00000003949	KIF21A (ENSEEEG00000001919)	slc2a13b (ENSEEEG00000001890)	lrrk2 (ENSEEEG00000001888)	CLPX (ENSEEEG00000001887)	spi1a (ENSEEEG00000001886)	ENSEEEG00000001885	FIBIN (ENSEEEG00000001884)	slc5a12 (ENSEEEG00000001873)
Channel catfish	MODERN SPECIES	5	ldhbb (ENSIPUG00000023078)	golt1bb (ENSIPUG00000023089)	slc35b4 (ENSIPUG00000023068)	chchd3b (ENSIPUG00000023055)	GPR22 (ENSIPUG00000023054)	hbp1 (ENSIPUG00000023044)	PRKAR2B (ENSIPUG00000023034)	DUS2 (ENSIPUG00000023029)	ENSIPUG00000023023	AMFR (ENSIPUG00000023007)	irx5b (ENSIPUG00000022999) #12	ENSIPUG00000022997	irx3b (ENSIPUG00000022990) #14	RPGRIP1L (ENSIPUG00000022966) #16	rbl2 (ENSIPUG00000022935) #18	SALL1 (ENSIPUG00000022928) #22	snx20 (ENSIPUG00000022925) #25	Mphosph6 (ENSIPUG00000022920)	Hsd17b2 (ENSIPUG00000022910)	GPI (ENSIPUG00000022840)	lsm14aa (ENSIPUG00000022820)	ENSIPUG00000022806	ENSIPUG00000022805	KIF21A (ENSIPUG00000022632)	slc2a13b (ENSIPUG00000022609)	lrrk2 (ENSIPUG00000022546)	CLPX (ENSIPUG00000022495)	spi1a (ENSIPUG00000022488)	ENSIPUG00000022471	slc5a12 (ENSIPUG00000022439)	ano3 (ENSIPUG00000022398)
Cyprinoidei	ANCESTRAL SPECIES	88	ENSGT00390000018903.n	ENSGT00940000155213.y	ENSGT00940000166064	ENSGT00940000157389	ENSGT00940000161531.a.b.d	ENSGT00940000157021	ENSGT00740000115898	ENSGT00390000009456	ENSGT00940000156469.a	ENSGT00550000075019	ENSGT00940000156131.a.a	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b #18	ENSGT00940000155938.b.b #22	ENSGT00530000063759.a #25	ENSGT00390000009212	ENSGT00940000160204	ENSGT00390000000707.y.a	ENSGT00940000154415.lb.b	ENSGT00940000166219.c	ENSGT00940000155323.a	ENSGT00940000155870.a.b	ENSGT00940000158267	ENSGT00390000017625.l	ENSGT00940000162754	ENSGT00390000015299.a.a.b	ENSGT00390000007623.d	ENSGT00940000159545	ENSGT00940000156257
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	466														ENSGT00520000055620.B #16	ENSGT00950000183202.a.b.j #18	ENSGT00940000155938.b.b.c #22	ENSGT00530000063759.a.h #25	ENSGT00390000009212.a	ENSGT00390000000707.y.a.f	ENSGT00940000154415.lb.b.i	ENSGT01100000263547.a.b.a.a	ENSGT00940000166219.c.b	ENSGT00940000155323.a.a	ENSGT00940000155870.a.b	ENSGT00940000158267.a	ENSGT00390000017625.l.c	ENSGT00940000162754.f	ENSGT00390000015299.a.a.b.b	ENSGT00390000007623.d	ENSGT00940000159545	ENSGT00940000156257.a.a
Cyprininae_a	ANCESTRAL SPECIES	333									ENSGT00940000156469.a.f.b	ENSGT00550000075019.h	ENSGT00940000156131.a.a.c	ENSGT00940000156482.c.d	ENSGT00940000161299.f.h.a #14	ENSGT00520000055620.B #16	ENSGT00950000183202.a.b.j #18	ENSGT00940000155938.b.b.c #22	ENSGT00530000063759.a.g.a #25	ENSGT00530000063759.a.h #25	ENSGT00390000009212.a	ENSGT00940000160204.c	ENSGT00390000000707.y.a.f	ENSGT00940000154415.lb.b.i	ENSGT01100000263547.a.b.a.a	ENSGT00940000166219.c.b	ENSGT00940000155323.a.a	ENSGT00940000155870.a.b	ENSGT00940000158267.a	ENSGT00390000017625.l.c	ENSGT00940000162754.f	ENSGT00390000015299.a.a.b.b	ENSGT00390000007623.d
Common carp reference	MODERN SPECIES	33	ENSCCRG00000011068	ENSCCRG00000064654	ENSCCRG00000066157	ENSCCRG00000030989	bmb (ENSCCRG00000041716)	faap24 (ENSCCRG00000041712)	ENSCCRG00000002557	ENSCCRG00000001119	ENSCCRG00000058134	amfra (ENSCCRG00000008162)	irx5b (ENSCCRG00000059883) #12	ENSCCRG00000057053	ENSCCRG00000046068 #14	rpgrip1l (ENSCCRG00000039247) #16	ENSCCRG00000043922 #18	ENSCCRG00000038771 #22	ENSCCRG00000006874 #25	hsd17b2 (ENSCCRG00000006879)	gpia (ENSCCRG00000078904)	lsm14aa (ENSCCRG00000064424)	ENSCCRG00000060464	ENSCCRG00000079053	ENSCCRG00000065800	KIF21A (ENSCCRG00000007026)	slc2a13b (ENSCCRG00000023254)	lrrk2 (ENSCCRG00000023910)	ENSCCRG00000061049	spi1a (ENSCCRG00000081854)	ENSCCRG00000019642	slc5a12 (ENSCCRG00000024569)	ANO3 (ENSCCRG00000024086)
Golden-line barbel	MODERN SPECIES	542	ENSSGRG00000038229	ENSSGRG00000038222	ENSSGRG00000038221	ENSSGRG00000038217	bmb (ENSSGRG00000038216)	faap24 (ENSSGRG00000038215)	ENSSGRG00000038214	SLC7A10 (ENSSGRG00000038213)	DUS2 (ENSSGRG00000038207)	ENSSGRG00000038200	amfra (ENSSGRG00000037972)	ENSSGRG00000037969	irx3b (ENSSGRG00000037967) #14	rpgrip1l (ENSSGRG00000037964) #16	RBL2 (ENSSGRG00000037705) #18	SALL1 (ENSSGRG00000037689) #22	SNX20 (ENSSGRG00000037682) #25	mphosph6 (ENSSGRG00000037681)	hsd17b2 (ENSSGRG00000037629)	gpia (ENSSGRG00000037253)	lsm14aa (ENSSGRG00000037249)	ENSSGRG00000037248	ENSSGRG00000037235	KIF21A (ENSSGRG00000035325)	slc2a13b (ENSSGRG00000035245)	lrrk2 (ENSSGRG00000035244)	CLPX (ENSSGRG00000034851)	spi1a (ENSSGRG00000034836)	ENSSGRG00000034835	FIBIN (ENSSGRG00000034833)	ANO3 (ENSSGRG00000034643)
Goldfish	MODERN SPECIES	45	ENSCARG00000041593	ENSCARG00000041543	ENSCARG00000041520	ENSCARG00000041496	ENSCARG00000041479	ENSCARG00000041473	ENSCARG00000041450	ENSCARG00000041438	ENSCARG00000041425	ENSCARG00000041387	NCAM2 (ENSCARG00000040923)	ENSCARG00000070186	irx3b (ENSCARG00000070184) #14	rpgrip1l (ENSCARG00000070171) #16	RBL2 (ENSCARG00000070118) #18	SALL1 (ENSCARG00000070076) #22	ENSCARG00000070073 #25	mphosph6 (ENSCARG00000070071)	hsd17b2 (ENSCARG00000070063)	gpia (ENSCARG00000070016)	lsm14aa (ENSCARG00000069997)	ENSCARG00000069993	ENSCARG00000069991	ENSCARG00000069951	ENSCARG00000069919	KIF21A (ENSCARG00000069661)	slc2a13b (ENSCARG00000069594)	lrrk2 (ENSCARG00000069416)	CLPX (ENSCARG00000069221)	spi1a (ENSCARG00000069198)	ENSCARG00000069190
Cyprininae	ANCESTRAL SPECIES	430	ENSGT00940000155213.y.a	ENSGT00940000166064.a	ENSGT00940000157389.bb	ENSGT00940000161531.a.b.d	ENSGT00940000157021	ENSGT00740000115898.f	ENSGT00390000009456.q	ENSGT00940000156469.a.f.a	ENSGT00550000075019	ENSGT00940000156131.a.a.d	ENSGT00940000156482.c	ENSGT00940000159483.a.a #12	ENSGT00950000183003.a.b.d	ENSGT00940000161299.f.h #14	ENSGT00950000183202.a.b.i #18	ENSGT00940000155938.b.b.d #22	ENSGT00530000063759.a.g.b #25	ENSGT00390000009212.b	ENSGT00940000160204	ENSGT00390000000707.y.a.e	ENSGT00940000154415.lb.b.j	ENSGT00940000166219.c.a	ENSGT00940000155323.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	474							ENSGT00390000009456.q	ENSGT00940000156469.a.f.a	ENSGT00550000075019.g	ENSGT00940000156131.a.a.d	ENSGT00940000156482.c.c	ENSGT00940000159483.a.a #12	ENSGT00950000183003.a.b.d	ENSGT00940000161299.f.h.b #14	ENSGT00950000183202.a.b.i #18	ENSGT00940000155938.b.b.d #22	ENSGT00530000063759.a.g.b #25	ENSGT00390000009212.b	ENSGT00940000160204.d	ENSGT00390000000707.y.a.e	ENSGT00940000154415.lb.b.j	ENSGT00940000166219.c.a	ENSGT00940000155323.a.b.b
Common carp reference	MODERN SPECIES	37	ENSCCRG00000067648	ENSCCRG00000005674	ENSCCRG00000060923	ENSCCRG00000082822	ENSCCRG00000037918	ENSCCRG00000054770	ENSCCRG00000073823	ENSCCRG00000001949	ENSCCRG00000005460	ENSCCRG00000056073	amfra (ENSCCRG00000004770)	irx5b (ENSCCRG00000079305) #12	ENSCCRG00000076778	ENSCCRG00000078261 #14	ENSCCRG00000038831 #18	ENSCCRG00000045509 #22	ENSCCRG00000076372 #25	mphosph6 (ENSCCRG00000072592)	hsd17b2 (ENSCCRG00000006911)	gpia (ENSCCRG00000006923)	lsm14aa (ENSCCRG00000082556)	ENSCCRG00000054426	ENSCCRG00000011168	lrrk2 (ENSCCRG00000023338)	ENSCCRG00000023607	spi1a (ENSCCRG00000067414)	ENSCCRG00000023629	FIBIN (ENSCCRG00000064565)	slc5a12 (ENSCCRG00000001602)	ANO3 (ENSCCRG00000001456)	svip (ENSCCRG00000073693)
Golden-line barbel	MODERN SPECIES	1400															RBL2 (ENSSGRG00000009247) #18	SALL1 (ENSSGRG00000009245) #22	mphosph6 (ENSSGRG00000009244)	ENSSGRG00000009243	gpia (ENSSGRG00000001674)	lsm14aa (ENSSGRG00000001453)	ENSSGRG00000001446	ENSSGRG00000001432
Goldfish	MODERN SPECIES	17	ENSCARG00000004124	ENSCARG00000004119	ENSCARG00000004114	ENSCARG00000004103	ENSCARG00000004097	bmb (ENSCARG00000004059)	faap24 (ENSCARG00000004024)	SLC7A10 (ENSCARG00000003943)	ENSCARG00000003898	amfra (ENSCARG00000014918)	irx5b (ENSCARG00000014913) #12	ENSCARG00000014897	irx3b (ENSCARG00000014892) #14	ENSCARG00000014877 #18	ENSCARG00000014871	SALL1 (ENSCARG00000014859) #22	SNX20 (ENSCARG00000014845) #25	mphosph6 (ENSCARG00000014811)	hsd17b2 (ENSCARG00000014711)	gpia (ENSCARG00000014200)	lsm14aa (ENSCARG00000014164)	ENSCARG00000014160	ENSCARG00000014156	ENSCARG00000014152	ENSCARG00000014149	ENSCARG00000014139	ENSCARG00000014136	ENSCARG00000014041	ENSCARG00000014023	ENSCARG00000014014	ENSCARG00000014005
Zebrafish	MODERN SPECIES	17	ENSDARG00000086591	ENSDARG00000111494	ENSDARG00000114169	ENSDARG00000110809	ENSDARG00000116781	bmb (ENSDARG00000096603)	faap24 (ENSDARG00000051731)	ENSDARG00000116673	SLC7A10 (ENSDARG00000051730)	DUS2 (ENSDARG00000077607)	ENSDARG00000051729	amfra (ENSDARG00000020218)	irx5b (ENSDARG00000074070) #12	rpgrip1l (ENSDARG00000051754) #16	RBL2 (ENSDARG00000045636) #18	SALL1 (ENSDARG00000075891) #22	SNX20 (ENSDARG00000045554) #25	mphosph6 (ENSDARG00000093007)	hsd17b2 (ENSDARG00000045553)	gpia (ENSDARG00000012987)	lsm14aa (ENSDARG00000006600)	ENSDARG00000025189	KIF21A (ENSDARG00000061131)	slc2a13b (ENSDARG00000076899)	lrrk2 (ENSDARG00000006169)	CLPX (ENSDARG00000067796)	spi1a (ENSDARG00000067797)	ENSDARG00000039951	FIBIN (ENSDARG00000039949)	slc5a12 (ENSDARG00000005004)	ANO3 (ENSDARG00000058015)