Mammalia	ANCESTRAL SPECIES	15	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000167176	ENSGT00940000165811	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Theria	ANCESTRAL SPECIES	19	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000167176	ENSGT00940000165811	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Eutheria	ANCESTRAL SPECIES	11	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00950000183091.B.b.a.a ##11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00950000183091.B.b.a.a ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Primates	ANCESTRAL SPECIES	17	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.d.b.a #10	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Cercopithecinae_d	ANCESTRAL SPECIES	47	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.d.b.a #10	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00910000147689 #16	ENSGT00390000005057.d #17	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Drill	MODERN SPECIES	711	ZBP1 (ENSMLEG00000031509) #7	PCK1 (ENSMLEG00000043825) #8	CTCFL (ENSMLEG00000030367) #9	ENSMLEG00000027505 #10	RAE1 (ENSMLEG00000037014) #11	SPO11 (ENSMLEG00000043384) #12	ENSMLEG00000042018 #13	TFAP2C (ENSMLEG00000030578) #14	ENSMLEG00000043662 #15	ENSMLEG00000013626 #16	ENSMLEG00000025747 #17	GCNT7 (ENSMLEG00000031478) #18	RTF2 (ENSMLEG00000036789) #19	CASS4 (ENSMLEG00000037604) #20	CSTF1 (ENSMLEG00000016128) #21	AURKA (ENSMLEG00000003588) #22	FAM210B (ENSMLEG00000036070) #23	CBLN4 (ENSMLEG00000018831) #24	DOK5 (ENSMLEG00000035038) #25	PFDN4 (ENSMLEG00000042229) #26	CYP24A1 (ENSMLEG00000038601) #27	BCAS1 (ENSMLEG00000028154) #28	ZNF217 (ENSMLEG00000028314) #29	ENSMLEG00000025465 #30	TSHZ2 (ENSMLEG00000033081) #31	ENSMLEG00000036978 #32	ZFP64 (ENSMLEG00000036238) #33	SALL4 (ENSMLEG00000030467) #34	ATP9A (ENSMLEG00000031475) #35	ENSMLEG00000000428 #36	NFATC2 (ENSMLEG00000034598) #37
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	648	ZBP1 (ENSCATG00000013143) #7	PCK1 (ENSCATG00000021561) #8	CTCFL (ENSCATG00000042235) #9	RBM38 (ENSCATG00000032133) ##10	RAE1 (ENSCATG00000029401) #11	SPO11 (ENSCATG00000041938) #12	BMP7 (ENSCATG00000005904) #13	TFAP2C (ENSCATG00000043757) #14	ENSCATG00000021733 #17	ENSCATG00000031399 #15	ENSCATG00000021152 #16	RTF2 (ENSCATG00000039310) #19	GCNT7 (ENSCATG00000013240) #18	CASS4 (ENSCATG00000033801) #20	CSTF1 (ENSCATG00000031885) #21	ENSCATG00000033256 #22	FAM210B (ENSCATG00000039274) #23	CBLN4 (ENSCATG00000036053) #24	DOK5 (ENSCATG00000029158) #25	PFDN4 (ENSCATG00000042568) #26	CYP24A1 (ENSCATG00000043442) #27	BCAS1 (ENSCATG00000031760) #28	ENSCATG00000015802	ZNF217 (ENSCATG00000032669) #29	ENSCATG00000022997 #30	TSHZ2 (ENSCATG00000039930) #31	ZFP64 (ENSCATG00000042266) #33	ENSCATG00000041010 #32	SALL4 (ENSCATG00000030757) #34	ATP9A (ENSCATG00000044505) #35	NFATC2 (ENSCATG00000042896) #37
Sooty mangabey	MODERN SPECIES	422												CAMK1D (ENSCATG00000031901)	ENSCATG00000014424	CCDC3 (ENSCATG00000031022)	OPTN (ENSCATG00000040173)	ENSCATG00000039338 #22	MCM10 (ENSCATG00000032727)	UCMA (ENSCATG00000040215)
Olive baboon	MODERN SPECIES	7	RBM38 (ENSPANG00000020919) ##10	ENSPANG00000036940	RAE1 (ENSPANG00000024502) #11	SPO11 (ENSPANG00000024503) #12	BMP7 (ENSPANG00000024504) #13	TFAP2C (ENSPANG00000024505) #14	ENSPANG00000047957	ENSPANG00000030727	ENSPANG00000037577	ENSPANG00000023210 #15	ENSPANG00000032241 #17	GCNT7 (ENSPANG00000022758) #18	RTF2 (ENSPANG00000018566) #19	CASS4 (ENSPANG00000020918) #20	CSTF1 (ENSPANG00000020917) #21	AURKA (ENSPANG00000021795) #22	FAM210B (ENSPANG00000040473) #23	MC3R (ENSPANG00000043329)	CBLN4 (ENSPANG00000049128) #24	ENSPANG00000046400	DOK5 (ENSPANG00000021794) #25	PFDN4 (ENSPANG00000021793) #26	CYP24A1 (ENSPANG00000020783) #27	BCAS1 (ENSPANG00000020784) #28	ENSPANG00000037067	ENSPANG00000038001	ZNF217 (ENSPANG00000020786) #29	ENSPANG00000004337 #30	TSHZ2 (ENSPANG00000049614) #31	ZFP64 (ENSPANG00000021108) #33	SALL4 (ENSPANG00000021792) #34
Macaca	ANCESTRAL SPECIES	16	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Pig-tailed macaque	MODERN SPECIES	462	PMEPA1 (ENSMNEG00000042458)	ZBP1 (ENSMNEG00000043957) #7	PCK1 (ENSMNEG00000039000) #8	CTCFL (ENSMNEG00000040577) #9	RBM38 (ENSMNEG00000034683) ##10	RAE1 (ENSMNEG00000043504) #11	SPO11 (ENSMNEG00000040588) #12	BMP7 (ENSMNEG00000007460) #13	TFAP2C (ENSMNEG00000041419) #14	ENSMNEG00000041000 #15	ENSMNEG00000031630 #17	RTF2 (ENSMNEG00000002223) #19	GCNT7 (ENSMNEG00000042982) #18	CASS4 (ENSMNEG00000041494) #20	CSTF1 (ENSMNEG00000028759) #21	AURKA (ENSMNEG00000020907) #22	FAM210B (ENSMNEG00000031940) #23	CBLN4 (ENSMNEG00000028083) #24	DOK5 (ENSMNEG00000005921) #25	PFDN4 (ENSMNEG00000028087) #26	CYP24A1 (ENSMNEG00000039138) #27	BCAS1 (ENSMNEG00000039962) #28	ZNF217 (ENSMNEG00000029796) #29	ENSMNEG00000028135 #30	TSHZ2 (ENSMNEG00000040060) #31	ZFP64 (ENSMNEG00000040581) #33	ENSMNEG00000034407 #32	SALL4 (ENSMNEG00000035995) #34	ATP9A (ENSMNEG00000023182) #35	NFATC2 (ENSMNEG00000034579) #37	KCNG1 (ENSMNEG00000029109)
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.b.b.b.a	ENSGT00940000158489.c ##10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.c #15	ENSGT00390000005057.d #17	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.b.b.a.b	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a.d	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Rhesus	MODERN SPECIES	1	ZBP1 (ENSMMUG00000022588) #7	PCK1 (ENSMMUG00000022586) #8	CTCFL (ENSMMUG00000016802) #9	ENSMMUG00000050216	RBM38 (ENSMMUG00000031391) ##10	RAE1 (ENSMMUG00000000252) #11	SPO11 (ENSMMUG00000050707) #12	BMP7 (ENSMMUG00000004074) #13	TFAP2C (ENSMMUG00000009364) #14	ENSMMUG00000000079 #15	ENSMMUG00000046647 #17	GCNT7 (ENSMMUG00000062215) #18	RTF2 (ENSMMUG00000000074) #19	CASS4 (ENSMMUG00000000073) #20	CSTF1 (ENSMMUG00000000072) #21	AURKA (ENSMMUG00000000070) #22	FAM210B (ENSMMUG00000061353) #23	MC3R (ENSMMUG00000051905)	CBLN4 (ENSMMUG00000006005) #24	ENSMMUG00000056122	ENSMMUG00000053508	DOK5 (ENSMMUG00000007090) #25	PFDN4 (ENSMMUG00000017300) #26	CYP24A1 (ENSMMUG00000014860) #27	BCAS1 (ENSMMUG00000020082) #28	ENSMMUG00000043345	ZNF217 (ENSMMUG00000018358) #29	TSHZ2 (ENSMMUG00000013035) #31	ZFP64 (ENSMMUG00000018846) #33	SALL4 (ENSMMUG00000003870) #34	ENSMMUG00000064070
Crab-eating macaque	MODERN SPECIES	1	ZBP1 (ENSMFAG00000030920) #7	PCK1 (ENSMFAG00000043755) #8	CTCFL (ENSMFAG00000037641) #9	ENSMFAG00000061711	RBM38 (ENSMFAG00000043808) ##10	RAE1 (ENSMFAG00000043344) #11	SPO11 (ENSMFAG00000031364) #12	BMP7 (ENSMFAG00000032242) #13	TFAP2C (ENSMFAG00000004040) #14	ENSMFAG00000046392 #15	ENSMFAG00000035848 #17	GCNT7 (ENSMFAG00000042446) #18	RTF2 (ENSMFAG00000002272) #19	CASS4 (ENSMFAG00000045759) #20	CSTF1 (ENSMFAG00000003531) #21	AURKA (ENSMFAG00000001851) #22	FAM210B (ENSMFAG00000056763) #23	ENSMFAG00000047548	MC3R (ENSMFAG00000062266)	CBLN4 (ENSMFAG00000058053) #24	ENSMFAG00000062425	DOK5 (ENSMFAG00000032194) #25	PFDN4 (ENSMFAG00000002174) #26	CYP24A1 (ENSMFAG00000046397) #27	BCAS1 (ENSMFAG00000033646) #28	ENSMFAG00000025867	ZNF217 (ENSMFAG00000041447) #29	TSHZ2 (ENSMFAG00000044946) #31	ENSMFAG00000063669	ENSMFAG00000060520	ZFP64 (ENSMFAG00000034598) #33
Vervet Monkey	MODERN SPECIES	11	C20orf85 (ENSCSAG00000015520)	PMEPA1 (ENSCSAG00000015515)	PCK1 (ENSCSAG00000015512) #8	RBM38 (ENSCSAG00000015503) ##10	RAE1 (ENSCSAG00000015487) #11	ENSCSAG00000018740	SPO11 (ENSCSAG00000015473) #12	BMP7 (ENSCSAG00000015448) #13	TFAP2C (ENSCSAG00000015443) #14	ENSCSAG00000015439 #15	ENSCSAG00000015434 #17	RTF2 (ENSCSAG00000015426) #19	GCNT7 (ENSCSAG00000015423) #18	CASS4 (ENSCSAG00000015418) #20	CSTF1 (ENSCSAG00000015411) #21	AURKA (ENSCSAG00000015393) #22	FAM210B (ENSCSAG00000015346) #23	MC3R (ENSCSAG00000018741)	CBLN4 (ENSCSAG00000015334) #24	DOK5 (ENSCSAG00000015329) #25	PFDN4 (ENSCSAG00000015325) #26	CYP24A1 (ENSCSAG00000015320) #27	BCAS1 (ENSCSAG00000015313) #28	ENSCSAG00000018742	ZNF217 (ENSCSAG00000015287) #29	ENSCSAG00000018743 #30	TSHZ2 (ENSCSAG00000018744) #31	ZFP64 (ENSCSAG00000015277) #33	SALL4 (ENSCSAG00000015269) #34	ATP9A (ENSCSAG00000015260) #35	NFATC2 (ENSCSAG00000015242) #37
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	548											ENSGT00390000005057.d #17	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e.c #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	617			TINAG (ENSRROG00000035923)	ENSRROG00000011633	MLIP (ENSRROG00000029163)	ENSRROG00000031084	LRRC1 (ENSRROG00000039946)	KLHL31 (ENSRROG00000034480)	GCLC (ENSRROG00000039518)	ELOVL5 (ENSRROG00000038948)	GCM1 (ENSRROG00000032236)	FBXO9 (ENSRROG00000029600)	CILK1 (ENSRROG00000034096)	GSTA4 (ENSRROG00000029994)	GSTA1 (ENSRROG00000044471)	ENSRROG00000041870 #22	TMEM14A (ENSRROG00000041634)	ENSRROG00000030207	TRAM2 (ENSRROG00000036043)	EFHC1 (ENSRROG00000022951)	ENSRROG00000023565	ENSRROG00000039209	PAQR8 (ENSRROG00000006635)	MCM3 (ENSRROG00000045226)	ENSRROG00000040384	IL17F (ENSRROG00000010614)	ENSRROG00000043580	IL17A (ENSRROG00000040427)	PKHD1 (ENSRROG00000035962)	TFAP2B (ENSRROG00000036382) ##14	ENSRROG00000014074
Golden snub-nosed monkey	MODERN SPECIES	3304	RAB3IP (ENSRROG00000030482)	BEST3 (ENSRROG00000037058)	LRRC10 (ENSRROG00000027186)	CCT2 (ENSRROG00000028760)	FRS2 (ENSRROG00000040727)	YEATS4 (ENSRROG00000037644)	LYZ (ENSRROG00000033846)	CPSF6 (ENSRROG00000042758)	CPM (ENSRROG00000043552)	ENSRROG00000045589	ENSRROG00000041180	SLC35E3 (ENSRROG00000043342)	NUP107 (ENSRROG00000040209)	RAP1B (ENSRROG00000030238)	ENSRROG00000002729	ENSRROG00000042652 #22	MDM1 (ENSRROG00000031790)	IL22 (ENSRROG00000031370)	IL26 (ENSRROG00000040267)
Golden snub-nosed monkey	MODERN SPECIES	3117											ENSRROG00000034227 #17	RTF2 (ENSRROG00000033279) #19	GCNT7 (ENSRROG00000036623) #18	CASS4 (ENSRROG00000041944) #20	CSTF1 (ENSRROG00000006757) #21	ENSRROG00000040148 #22	FAM210B (ENSRROG00000036571) #23	MC3R (ENSRROG00000005961)	CBLN4 (ENSRROG00000043047) #24
Black snub-nosed monkey	MODERN SPECIES	314											ENSRBIG00000042615 #17	RTF2 (ENSRBIG00000029928) #19	GCNT7 (ENSRBIG00000008757) #18	CASS4 (ENSRBIG00000032114) #20	CSTF1 (ENSRBIG00000042407) #21	ENSRBIG00000042086 #22	FAM210B (ENSRBIG00000028911) #23	MC3R (ENSRBIG00000001243)	CBLN4 (ENSRBIG00000031342) #24	SHISA3 (ENSRBIG00000035663)	ATP8A1 (ENSRBIG00000031899)	NECAB1 (ENSRBIG00000023718)	ENSRBIG00000039255	C8orf88 (ENSRBIG00000038662)	PIP4P2 (ENSRBIG00000034914)	OTUD6B (ENSRBIG00000042718)
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000154900.e.d.a #22
Golden snub-nosed monkey	MODERN SPECIES	2016		SEC13 (ENSRROG00000040800)	ATP2B2 (ENSRROG00000033593)	SLC6A11 (ENSRROG00000031463)	SLC6A1 (ENSRROG00000040161)	ENSRROG00000044510	HRH1 (ENSRROG00000012382)	ATG7 (ENSRROG00000041008)	ENSRROG00000038335	VGLL4 (ENSRROG00000032842)	TAMM41 (ENSRROG00000034628)	ENSRROG00000042628	SYN2 (ENSRROG00000040768)	TIMP4 (ENSRROG00000043357)	PPARG (ENSRROG00000044807)	ENSRROG00000034587 #22	TSEN2 (ENSRROG00000041156)	MKRN2OS (ENSRROG00000037999)	MKRN2 (ENSRROG00000033767)	ENSRROG00000041930
Black snub-nosed monkey	MODERN SPECIES	1208													TIMP4 (ENSRBIG00000032580)	SYN2 (ENSRBIG00000030722)	ENSRBIG00000029744	ENSRBIG00000036452 #22	ENSRBIG00000033045	UCK2 (ENSRBIG00000023390)	ENSRBIG00000028586
Rhinopithecus	ANCESTRAL SPECIES	92	ENSGT00940000156509	ENSGT00940000159413	ENSGT00950000183215.c.a.a	ENSGT00950000183163.a.b.c	ENSGT00950000182941.a.a.a	ENSGT00940000159155	ENSGT00940000157264	ENSGT00940000160083	ENSGT00910000146884	ENSGT00940000157314.A	ENSGT00940000161124	ENSGT00510000048929	ENSGT00940000160850	ENSGT00940000154296.jb.b	ENSGT00940000153876.B.i	ENSGT00940000154900.e.d.b #22	ENSGT00940000158448	ENSGT00530000063484.a.c	ENSGT00530000064150	ENSGT00740000116829	ENSGT00940000160412	ENSGT00950000182963.a.a	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.a.b.b.b.b.b.a.a.a.b.b	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00940000158749	ENSGT00470000042287	ENSGT00500000044928	ENSGT00940000157418	ENSGT00530000063624.A
Black snub-nosed monkey	MODERN SPECIES	1850															ENSRBIG00000010479	ENSRBIG00000034597 #22	TNFAIP3 (ENSRBIG00000034026)	ENSRBIG00000025427
Golden snub-nosed monkey	MODERN SPECIES	2152	PDE7B (ENSRROG00000044535)	MTFR2 (ENSRROG00000034463)	BCLAF1 (ENSRROG00000040259)	MAP7 (ENSRROG00000017668)	ENSRROG00000013913	MAP3K5 (ENSRROG00000031252)	PEX7 (ENSRROG00000036829)	SLC35D3 (ENSRROG00000035626)	ENSRROG00000038139	IL20RA (ENSRROG00000007730)	IL22RA2 (ENSRROG00000002783)	IFNGR1 (ENSRROG00000035100)	OLIG3 (ENSRROG00000019602)	ENSRROG00000036262	ENSRROG00000041568	ENSRROG00000041456 #22	TNFAIP3 (ENSRROG00000041571)	PERP (ENSRROG00000034877)	ARFGEF3 (ENSRROG00000030285)	SMIM28 (ENSRROG00000031229)	HEBP2 (ENSRROG00000034383)	NHSL1 (ENSRROG00000005383)	ENSRROG00000043594	CCDC28A (ENSRROG00000006207)	ECT2L (ENSRROG00000021187)	REPS1 (ENSRROG00000002530)	ABRACL (ENSRROG00000038800)	HECA (ENSRROG00000041614)	TXLNB (ENSRROG00000036136)	CITED2 (ENSRROG00000039615)
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.a #15	ENSGT00390000005057.b #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT01090000260115	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Hominidae	ANCESTRAL SPECIES	18	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.a #15	ENSGT00390000005057.b #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00950000183120.e.b.b.b	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.a #15	ENSGT00390000005057.b #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Gorilla	MODERN SPECIES	11	PMEPA1 (ENSGGOG00000013821)	ZBP1 (ENSGGOG00000011001) #7	PCK1 (ENSGGOG00000010993) #8	CTCFL (ENSGGOG00000005761) #9	HMGB1P1 (ENSGGOG00000007804)	ENSGGOG00000007795 #10	ENSGGOG00000007789 #11	SPO11 (ENSGGOG00000008846) #12	BMP7 (ENSGGOG00000003803) #13	TFAP2C (ENSGGOG00000000420) #14	FAM209A (ENSGGOG00000038147) #15	ENSGGOG00000023300 #18	RTF2 (ENSGGOG00000004223) #19	CASS4 (ENSGGOG00000004217) #20	CSTF1 (ENSGGOG00000007205) #21	AURKA (ENSGGOG00000007197) #22	FAM210B (ENSGGOG00000043075) #23	MC3R (ENSGGOG00000028519)	CBLN4 (ENSGGOG00000010488) #24	ENSGGOG00000038418	ENSGGOG00000042206	DOK5 (ENSGGOG00000002089) #25	PFDN4 (ENSGGOG00000027337) #26	CYP24A1 (ENSGGOG00000009673) #27	BCAS1 (ENSGGOG00000001286) #28	ZNF217 (ENSGGOG00000022817) #29	ENSGGOG00000043241 #30	TSHZ2 (ENSGGOG00000005282) #31	ENSGGOG00000026918 #32	ZFP64 (ENSGGOG00000012030) #33	SALL4 (ENSGGOG00000001832) #34
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00950000183120.e.b.b.b	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.a #15	ENSGT00390000005057.b #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Human	MODERN SPECIES	12	ZBP1 (ENSG00000124256) #7	PCK1 (ENSG00000124253) #8	CTCFL (ENSG00000124092) #9	HMGB1P1 (ENSG00000124097)	RBM38 (ENSG00000132819) #10	RAE1 (ENSG00000101146) #11	SPO11 (ENSG00000054796) #12	BMP7 (ENSG00000101144) #13	TFAP2C (ENSG00000087510) #14	FAM209B (ENSG00000213714) #15	FAM209A (ENSG00000124103) #15	GCNT7 (ENSG00000124091) #18	RTF2 (ENSG00000022277) #19	CASS4 (ENSG00000087589) #20	CSTF1 (ENSG00000101138) #21	AURKA (ENSG00000087586) #22	FAM210B (ENSG00000124098) #23	MC3R (ENSG00000124089)	CBLN4 (ENSG00000054803) #24	DOK5 (ENSG00000101134) #25	PFDN4 (ENSG00000101132) #26	CYP24A1 (ENSG00000019186) #27	BCAS1 (ENSG00000064787) #28	ZNF217 (ENSG00000171940) #29	TSHZ2 (ENSG00000182463) #31	ZFP64 (ENSG00000020256) #33	SALL4 (ENSG00000101115) #34	ATP9A (ENSG00000054793) #35	NFATC2 (ENSG00000101096) #37	KCNG1 (ENSG00000026559)	MOCS3 (ENSG00000124217)
Pan	ANCESTRAL SPECIES	15	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00950000183120.e.b.b.b	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.a #15	ENSGT00390000005057.b #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.e #22	ENSGT00940000156134.e #23	ENSGT00940000159728 #24	ENSGT00900000143204.a	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00390000018566.j #32	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36
Chimpanzee	MODERN SPECIES	11	ZBP1 (ENSPTRG00000013665) #7	PCK1 (ENSPTRG00000013664) #8	CTCFL (ENSPTRG00000013663) #9	HMGB1P1 (ENSPTRG00000044893)	RBM38 (ENSPTRG00000013661) #10	MTRNR2L3 (ENSPTRG00000041872)	RAE1 (ENSPTRG00000013658) #11	SPO11 (ENSPTRG00000013657) #12	BMP7 (ENSPTRG00000013656) #13	TFAP2C (ENSPTRG00000013654) #14	FAM209B (ENSPTRG00000013652) #15	FAM209A (ENSPTRG00000034022) #15	RTF2 (ENSPTRG00000013649) #19	CASS4 (ENSPTRG00000013648) #20	CSTF1 (ENSPTRG00000013647) #21	AURKA (ENSPTRG00000013646) #22	FAM210B (ENSPTRG00000013645) #23	CBLN4 (ENSPTRG00000013643) #24	ENSPTRG00000050041	ENSPTRG00000044637	ENSPTRG00000048333	DOK5 (ENSPTRG00000013642) #25	PFDN4 (ENSPTRG00000013641) #26	CYP24A1 (ENSPTRG00000013640) #27	BCAS1 (ENSPTRG00000013638) #28	ENSPTRG00000045485	ZNF217 (ENSPTRG00000013636) #29	ENSPTRG00000044495 #30	TSHZ2 (ENSPTRG00000013634) #31	ENSPTRG00000052453 #32	ZFP64 (ENSPTRG00000013632) #33
Bonobo	MODERN SPECIES	11	PCK1 (ENSPPAG00000037672) #8	CTCFL (ENSPPAG00000031741) #9	HMGB1P1 (ENSPPAG00000028336)	ENSPPAG00000027757 #10	ENSPPAG00000032947	RAE1 (ENSPPAG00000037209) #11	SPO11 (ENSPPAG00000036133) #12	BMP7 (ENSPPAG00000032623) #13	TFAP2C (ENSPPAG00000031621) #14	FAM209B (ENSPPAG00000031375) #15	FAM209A (ENSPPAG00000032658) #15	ENSPPAG00000031674 #18	RTF2 (ENSPPAG00000026702) #19	CASS4 (ENSPPAG00000000925) #20	CSTF1 (ENSPPAG00000037866) #21	AURKA (ENSPPAG00000031434) #22	ENSPPAG00000030559 #23	CBLN4 (ENSPPAG00000029475) #24	ENSPPAG00000029138	ENSPPAG00000026181	DOK5 (ENSPPAG00000041888) #25	PFDN4 (ENSPPAG00000041414) #26	CYP24A1 (ENSPPAG00000038708) #27	BCAS1 (ENSPPAG00000036066) #28	ZNF217 (ENSPPAG00000033439) #29	ENSPPAG00000032773 #30	TSHZ2 (ENSPPAG00000031686) #31	ENSPPAG00000040778 #32	ZFP64 (ENSPPAG00000028816) #33	SALL4 (ENSPPAG00000038064) #34	ATP9A (ENSPPAG00000030836) #35
Orangutan	MODERN SPECIES	11	PMEPA1 (ENSPPYG00000041071)	ZBP1 (ENSPPYG00000011165) #7	PCK1 (ENSPPYG00000011164) #8	CTCFL (ENSPPYG00000011163) #9	RBM38 (ENSPPYG00000041798) #10	ENSPPYG00000033953	RAE1 (ENSPPYG00000011159) #11	SPO11 (ENSPPYG00000011158) #12	BMP7 (ENSPPYG00000011157) #13	TFAP2C (ENSPPYG00000011156) #14	ENSPPYG00000033583 #15	ENSPPYG00000011152 #18	RTF2 (ENSPPYG00000011151) #19	CASS4 (ENSPPYG00000011150) #20	CSTF1 (ENSPPYG00000011149) #21	AURKA (ENSPPYG00000011148) #22	FAM210B (ENSPPYG00000011147) #23	MC3R (ENSPPYG00000011146)	CBLN4 (ENSPPYG00000011145) #24	DOK5 (ENSPPYG00000011144) #25	ENSPPYG00000025840 #26	CYP24A1 (ENSPPYG00000011143) #27	BCAS1 (ENSPPYG00000011142) #28	ZNF217 (ENSPPYG00000011140) #29	ENSPPYG00000037756 #30	TSHZ2 (ENSPPYG00000011269) #31	ZFP64 (ENSPPYG00000011139) #33	ENSPPYG00000019918	SALL4 (ENSPPYG00000011138) #34	ENSPPYG00000011136 #35	NFATC2 (ENSPPYG00000011135) #37
Gibbon	MODERN SPECIES	3	ZBP1 (ENSNLEG00000007069) #7	PCK1 (ENSNLEG00000007068) #8	CTCFL (ENSNLEG00000007062) #9	ENSNLEG00000028818	ENSNLEG00000007061 #10	RAE1 (ENSNLEG00000007055) #11	SPO11 (ENSNLEG00000007051) #12	BMP7 (ENSNLEG00000007046) #13	ENSNLEG00000007045	TFAP2C (ENSNLEG00000007042) #14	FAM209A (ENSNLEG00000007041) #15	RTF2 (ENSNLEG00000007037) #19	ENSNLEG00000028915 #18	CASS4 (ENSNLEG00000007036) #20	CSTF1 (ENSNLEG00000007034) #21	AURKA (ENSNLEG00000007029) #22	ENSNLEG00000007028 #23	MC3R (ENSNLEG00000019230)	CBLN4 (ENSNLEG00000007027) #24	DOK5 (ENSNLEG00000007024) #25	PFDN4 (ENSNLEG00000007023) #26	CYP24A1 (ENSNLEG00000007020) #27	ENSNLEG00000007019 #28	ENSNLEG00000013615	ZNF217 (ENSNLEG00000007017) #29	ENSNLEG00000028918 #30	TSHZ2 (ENSNLEG00000007016) #31	ZFP64 (ENSNLEG00000007015) #33	ENSNLEG00000034384 #32	SALL4 (ENSNLEG00000007013) #34	ATP9A (ENSNLEG00000007005) #35
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Pan	ANCESTRAL SPECIES		ENSGT00940000162464	ENSGT00940000157407	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665	ENSGT00390000004585	ENSGT00940000157560.e	ENSGT00390000017839.o.b.b.a.b	ENSGT00940000154900.f ##22	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00550000074815	ENSGT00940000159967	ENSGT00940000159171	ENSGT00940000157390	ENSGT00390000001960	ENSGT00390000011270	ENSGT00410000025698.a	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00910000147483	ENSGT00940000156560
Chimpanzee	MODERN SPECIES		AIDA (ENSPTRG00000002010)	ENSPTRG00000052614	MIA3 (ENSPTRG00000052232)	TAF1A (ENSPTRG00000002007)	HHIPL2 (ENSPTRG00000002006)	ENSPTRG00000045546	DUSP10 (ENSPTRG00000002005)	HLX (ENSPTRG00000002004)	MTARC1 (ENSPTRG00000002003)	MTARC2 (ENSPTRG00000002002)	C1H1orf115 (ENSPTRG00000047775)	MARK1 (ENSPTRG00000002000)	ENSPTRG00000048086	ENSPTRG00000046120	ENSPTRG00000047107	ENSPTRG00000049590 ##22	ENSPTRG00000052357	RAB3GAP2 (ENSPTRG00000001999)	IARS2 (ENSPTRG00000001997)	BPNT1 (ENSPTRG00000001996)	EPRS1 (ENSPTRG00000001995)	SLC30A10 (ENSPTRG00000001994)	LYPLAL1 (ENSPTRG00000001993)	TGFB2 (ENSPTRG00000001992)	RRP15 (ENSPTRG00000039779)	SPATA17 (ENSPTRG00000001988)	GPATCH2 (ENSPTRG00000001986)	ESRRG (ENSPTRG00000023622)	USH2A (ENSPTRG00000001984)	KCTD3 (ENSPTRG00000001979)	ENSPTRG00000046254
Bonobo	MODERN SPECIES		BROX (ENSPPAG00000039244)	ENSPPAG00000034152	ENSPPAG00000034603	MIA3 (ENSPPAG00000034682)	TAF1A (ENSPPAG00000038647)	HHIPL2 (ENSPPAG00000042275)	ENSPPAG00000041428	DUSP10 (ENSPPAG00000035438)	ENSPPAG00000039905	HLX (ENSPPAG00000031929)	MTARC1 (ENSPPAG00000040763)	MTARC2 (ENSPPAG00000001103)	C1orf115 (ENSPPAG00000042551)	MARK1 (ENSPPAG00000034966)	ENSPPAG00000032071	ENSPPAG00000027472 ##22	RAB3GAP2 (ENSPPAG00000041652)	IARS2 (ENSPPAG00000029870)	BPNT1 (ENSPPAG00000030575)	EPRS1 (ENSPPAG00000036757)	SLC30A10 (ENSPPAG00000041238)	LYPLAL1 (ENSPPAG00000038656)	TGFB2 (ENSPPAG00000030603)	RRP15 (ENSPPAG00000042109)	ENSPPAG00000018811	SPATA17 (ENSPPAG00000031018)	GPATCH2 (ENSPPAG00000038887)	ESRRG (ENSPPAG00000035120)	USH2A (ENSPPAG00000030873)	KCTD3 (ENSPPAG00000041980)	ENSPPAG00000034142
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000154900.f ##22
Golden snub-nosed monkey	MODERN SPECIES	1377											MTARC1 (ENSRROG00000042311)	MTARC2 (ENSRROG00000035861)	C1orf115 (ENSRROG00000045358)	MARK1 (ENSRROG00000034053)	ENSRROG00000008342	ENSRROG00000044668 ##22	RAB3GAP2 (ENSRROG00000032167)	IARS2 (ENSRROG00000013275)	BPNT1 (ENSRROG00000029148)	EPRS1 (ENSRROG00000039885)
Black snub-nosed monkey	MODERN SPECIES	305	ENSRBIG00000039759	MIA3 (ENSRBIG00000033779)	TAF1A (ENSRBIG00000033404)	HHIPL2 (ENSRBIG00000040993)	ENSRBIG00000037388	DUSP10 (ENSRBIG00000037579)	ENSRBIG00000039941	HLX (ENSRBIG00000013026)	MTARC1 (ENSRBIG00000019755)	MTARC2 (ENSRBIG00000036388)	C1orf115 (ENSRBIG00000022485)	MARK1 (ENSRBIG00000040706)	ENSRBIG00000044372	ENSRBIG00000008972	RAB3GAP2 (ENSRBIG00000027351)	ENSRBIG00000033068 ##22	IARS2 (ENSRBIG00000002958)	BPNT1 (ENSRBIG00000043345)	EPRS1 (ENSRBIG00000034767)	SLC30A10 (ENSRBIG00000028231)	LYPLAL1 (ENSRBIG00000026721)	TGFB2 (ENSRBIG00000013890)	RRP15 (ENSRBIG00000033496)	SPATA17 (ENSRBIG00000037273)	GPATCH2 (ENSRBIG00000028371)	ESRRG (ENSRBIG00000028583)	USH2A (ENSRBIG00000044398)	KCTD3 (ENSRBIG00000042097)	ENSRBIG00000036717	KCNK2 (ENSRBIG00000041890)
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.vb #26	ENSGT00940000153313.C.b	ENSGT00390000006865	ENSGT00940000160161	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a	ENSGT00940000159884.a #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b.r #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.vb #26	ENSGT00940000153313.C.b	ENSGT00390000006865	ENSGT00940000160161	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a	ENSGT00940000159884.a #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33
Marmoset	MODERN SPECIES	17	PMEPA1 (ENSCJAG00000086391)	ZBP1 (ENSCJAG00000019094) #7	PCK1 (ENSCJAG00000042408) #8	ENSCJAG00000065101	CTCFL (ENSCJAG00000019109) #9	RBM38 (ENSCJAG00000019139) #10	SPO11 (ENSCJAG00000019147) #12	BMP7 (ENSCJAG00000019172) #13	ENSCJAG00000078870	TFAP2C (ENSCJAG00000011343) #14	ENSCJAG00000011338 #15	GCNT7 (ENSCJAG00000011336) #18	RTF2 (ENSCJAG00000011308) #19	CASS4 (ENSCJAG00000011299) #20	ENSCJAG00000011281 #21	AURKA (ENSCJAG00000011266) #22	FAM210B (ENSCJAG00000041865) #23	MC3R (ENSCJAG00000011249)	CBLN4 (ENSCJAG00000080243) #24	ENSCJAG00000079632	DOK5 (ENSCJAG00000002600) #25	ENSCJAG00000022488	ENSCJAG00000080357	ENSCJAG00000084558	AKAP3 (ENSCJAG00000002622)	NDUFA9 (ENSCJAG00000002625)	ENSCJAG00000020407	CYP24A1 (ENSCJAG00000000625) #27	BCAS1 (ENSCJAG00000000622) #28	ENSCJAG00000084109	ENSCJAG00000023203
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b.r #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.vb #26	ENSGT00940000153313.C.b	ENSGT00390000006865	ENSGT00940000160161	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000154319.u.a	ENSGT00940000159884.a #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33
Capuchin	MODERN SPECIES	99	PMEPA1 (ENSCCAG00000027264)	ZBP1 (ENSCCAG00000009469) #7	PCK1 (ENSCCAG00000036283) #8	CTCFL (ENSCCAG00000026632) #9	RBM38 (ENSCCAG00000036872) #10	RAE1 (ENSCCAG00000022835) #11	SPO11 (ENSCCAG00000022540) #12	BMP7 (ENSCCAG00000022185) #13	TFAP2C (ENSCCAG00000019946) #14	ENSCCAG00000029975 #15	RTF2 (ENSCCAG00000030126) #19	GCNT7 (ENSCCAG00000010825) #18	CASS4 (ENSCCAG00000016222) #20	ENSCCAG00000014975	CSTF1 (ENSCCAG00000030350) #21	AURKA (ENSCCAG00000022095) #22	FAM210B (ENSCCAG00000029562) #23	MC3R (ENSCCAG00000013742)	CBLN4 (ENSCCAG00000029551) #24	DOK5 (ENSCCAG00000030738) #25	ENSCCAG00000026393 #26	AKAP3 (ENSCCAG00000023272)	NDUFA9 (ENSCCAG00000026763)	ST3GAL5 (ENSCCAG00000031165)	POLR1A (ENSCCAG00000019839)	PTCD3 (ENSCCAG00000028481)	IMMT (ENSCCAG00000033500)	MRPL35 (ENSCCAG00000034626)	REEP1 (ENSCCAG00000031799)	KDM3A (ENSCCAG00000022984)	CHMP3 (ENSCCAG00000027121)
Bolivian squirrel monkey	MODERN SPECIES	93	ZBP1 (ENSSBOG00000032730) #7	PCK1 (ENSSBOG00000020912) #8	CTCFL (ENSSBOG00000029240) #9	RBM38 (ENSSBOG00000031053) #10	RAE1 (ENSSBOG00000027737) #11	SPO11 (ENSSBOG00000032033) #12	BMP7 (ENSSBOG00000029401) #13	ENSSBOG00000030411	ENSSBOG00000019282	ENSSBOG00000028726 #14	ENSSBOG00000026573 #15	GCNT7 (ENSSBOG00000025565) #18	RTF2 (ENSSBOG00000032473) #19	CASS4 (ENSSBOG00000030702) #20	CSTF1 (ENSSBOG00000024921) #21	AURKA (ENSSBOG00000007729) #22	FAM210B (ENSSBOG00000024853) #23	MC3R (ENSSBOG00000011355)	CBLN4 (ENSSBOG00000027027) #24	DOK5 (ENSSBOG00000034460) #25	ENSSBOG00000032651 #26	ENSSBOG00000027064	NDUFA9 (ENSSBOG00000023634)	GALNT8 (ENSSBOG00000023511)	CYP24A1 (ENSSBOG00000033981) #27	BCAS1 (ENSSBOG00000027776) #28	ENSSBOG00000017716	ZNF217 (ENSSBOG00000023737) #29	ENSSBOG00000018726 #30	TSHZ2 (ENSSBOG00000024081) #31	ZFP64 (ENSSBOG00000026654) #33
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1347	ANKRD60 (ENSANAG00000037028)	C20orf85 (ENSANAG00000022786)	ENSANAG00000037500	ZBP1 (ENSANAG00000038003) #7	PCK1 (ENSANAG00000023372) #8	CTCFL (ENSANAG00000024428) #9	RBM38 (ENSANAG00000031959) #10	RAE1 (ENSANAG00000030498) #11	SPO11 (ENSANAG00000034371) #12	BMP7 (ENSANAG00000036616) #13	TFAP2C (ENSANAG00000038475) #14	GCNT7 (ENSANAG00000038307) #18	RTF2 (ENSANAG00000028030) #19	CASS4 (ENSANAG00000030932) #20	CSTF1 (ENSANAG00000033317) #21	ENSANAG00000038011 #22	FAM210B (ENSANAG00000035348) #23	MC3R (ENSANAG00000006077)	CBLN4 (ENSANAG00000027031) #24	DOK5 (ENSANAG00000016760) #25	AKAP3 (ENSANAG00000029990)	NDUFA9 (ENSANAG00000036928)	CYP24A1 (ENSANAG00000028217) #27	BCAS1 (ENSANAG00000019184) #28	ENSANAG00000028551	ENSANAG00000036769 #29	ENSANAG00000005571 #30	TSHZ2 (ENSANAG00000038357) #31	ZFP64 (ENSANAG00000034694) #33	SALL4 (ENSANAG00000023352) #34	ATP9A (ENSANAG00000032631) #35
Mas night monkey	MODERN SPECIES	844	ENSANAG00000005727	COQ5 (ENSANAG00000038352)	RNF10 (ENSANAG00000021356)	POP5 (ENSANAG00000023744)	CABP1 (ENSANAG00000024335)	MLEC (ENSANAG00000038365)	UNC119B (ENSANAG00000038463)	ACADS (ENSANAG00000020561)	ENSANAG00000036744	SPPL3 (ENSANAG00000023007)	HNF1A (ENSANAG00000020753)	ENSANAG00000038481	OASL (ENSANAG00000024063)	ENSANAG00000023846	ENSANAG00000036614	ENSANAG00000035687 #22	P2RX7 (ENSANAG00000023576)	P2RX4 (ENSANAG00000027811)	CAMKK2 (ENSANAG00000031846)	ANAPC5 (ENSANAG00000038447)	ENSANAG00000020320	ENSANAG00000026949	ENSANAG00000024120	ORAI1 (ENSANAG00000036652)	MORN3 (ENSANAG00000020830)
Tarsier	MODERN SPECIES	4824												ENSTSYG00000012555 #15	RTFDC1 (ENSTSYG00000005488) #19	CASS4 (ENSTSYG00000010918) #20	CSTF1 (ENSTSYG00000003181) #21	AURKA (ENSTSYG00000036090) #22	ENSTSYG00000035510 #23
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Mouse lemur	MODERN SPECIES	9	ANKRD60 (ENSMICG00000001741)	C20orf85 (ENSMICG00000035405)	PMEPA1 (ENSMICG00000038326)	ZBP1 (ENSMICG00000046613) #7	PCK1 (ENSMICG00000043054) #8	ENSMICG00000043482 #9	RBM38 (ENSMICG00000038011) #10	RAE1 (ENSMICG00000005704) #11	SPO11 (ENSMICG00000000678) #12	BMP7 (ENSMICG00000005700) #13	TFAP2C (ENSMICG00000030931) #14	GCNT7 (ENSMICG00000045498) #18	RTF2 (ENSMICG00000034383) #19	CASS4 (ENSMICG00000004650) #20	CSTF1 (ENSMICG00000004648) #21	AURKA (ENSMICG00000004643) #22	FAM210B (ENSMICG00000047974) #23	ENSMICG00000040906	ENSMICG00000043597	CBLN4 (ENSMICG00000026678) #24	ENSMICG00000004645 #27	BCAS1 (ENSMICG00000004635) #28	ZNF217 (ENSMICG00000009450) #29	ENSMICG00000045708 #30	CYP24A1 (ENSMICG00000029179) #27	PFDN4 (ENSMICG00000004651) #26	DOK5 (ENSMICG00000004144) #25	ENSMICG00000015229	SNRPB2 (ENSMICG00000015404)	OTOR (ENSMICG00000043592)	PCSK2 (ENSMICG00000004252)
Lemuriformes_a	ANCESTRAL SPECIES	70	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Coquerels sifaka	MODERN SPECIES	340						RBM38 (ENSPCOG00000026201) #10	ENSPCOG00000027779 #11	SPO11 (ENSPCOG00000022114) #12	BMP7 (ENSPCOG00000011212) #13	TFAP2C (ENSPCOG00000007428) #14	ENSPCOG00000019821 #15	GCNT7 (ENSPCOG00000020640) #18	RTF2 (ENSPCOG00000005968) #19	CASS4 (ENSPCOG00000019485) #20	CSTF1 (ENSPCOG00000020146) #21	AURKA (ENSPCOG00000015207) #22	FAM210B (ENSPCOG00000022573) #23	CBLN4 (ENSPCOG00000020998) #24	ENSPCOG00000026343	DOK5 (ENSPCOG00000017168) #25	ENSPCOG00000018423 #26	CYP24A1 (ENSPCOG00000012205) #27	BCAS1 (ENSPCOG00000021951) #28	ZNF217 (ENSPCOG00000000038) #29	ENSPCOG00000010827 #30
Greater bamboo lemur	MODERN SPECIES	665		PMEPA1 (ENSPSMG00000000761)	ENSPSMG00000000731 #7	PCK1 (ENSPSMG00000000719) #8	ENSPSMG00000000700 #9	RBM38 (ENSPSMG00000000690) #10	RAE1 (ENSPSMG00000000663) #11	SPO11 (ENSPSMG00000000622) #12	BMP7 (ENSPSMG00000000557) #13	TFAP2C (ENSPSMG00000000517) #14	ENSPSMG00000000507 #15	GCNT7 (ENSPSMG00000000506) #18	RTF2 (ENSPSMG00000000441) #19	CASS4 (ENSPSMG00000000305) #20	CSTF1 (ENSPSMG00000000272) #21	AURKA (ENSPSMG00000000225) #22	FAM210B (ENSPSMG00000000105) #23	MC3R (ENSPSMG00000023712)	CBLN4 (ENSPSMG00000023704) #24	DOK5 (ENSPSMG00000023699) #25
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	138	C20orf85 (ENSOGAG00000003886)	PMEPA1 (ENSOGAG00000014675)	ZBP1 (ENSOGAG00000014671) #7	PCK1 (ENSOGAG00000014667) #8	CTCFL (ENSOGAG00000014657) #9	RBM38 (ENSOGAG00000029136) #10	RAE1 (ENSOGAG00000014649) #11	SPO11 (ENSOGAG00000014639) #12	BMP7 (ENSOGAG00000014634) #13	ENSOGAG00000033901 #14	ENSOGAG00000028848 #15	GCNT7 (ENSOGAG00000004446) #18	RTF2 (ENSOGAG00000004444) #19	CASS4 (ENSOGAG00000034431) #20	CSTF1 (ENSOGAG00000004442) #21	ENSOGAG00000004441 #22	FAM210B (ENSOGAG00000004440) #23	MC3R (ENSOGAG00000004439)	CBLN4 (ENSOGAG00000001413) #24	DOK5 (ENSOGAG00000005109) #25	PFDN4 (ENSOGAG00000016375) #26	CYP24A1 (ENSOGAG00000016370) #27	BCAS1 (ENSOGAG00000000952) #28	ZNF217 (ENSOGAG00000001685) #29	ENSOGAG00000033043 #30	TSHZ2 (ENSOGAG00000008544) #31	ZFP64 (ENSOGAG00000005192) #33	SALL4 (ENSOGAG00000013799) #34	ATP9A (ENSOGAG00000013793) #35	NFATC2 (ENSOGAG00000013787) #37	KCNG1 (ENSOGAG00000028070)
Bushbaby	MODERN SPECIES	146	COL11A2 (ENSOGAG00000025975)	ENSOGAG00000034269	ENSOGAG00000016138	HLA-DPA1 (ENSOGAG00000006476)	HLA-DOA (ENSOGAG00000014685)	BRD2 (ENSOGAG00000006473)	HLA-DMA (ENSOGAG00000006029)	HLA-DMB (ENSOGAG00000032749)	ENSOGAG00000013823	PSMB9 (ENSOGAG00000013846)	TAP1 (ENSOGAG00000013836)	PSMB8 (ENSOGAG00000013830)	ENSOGAG00000031343	HLA-DQB1 (ENSOGAG00000005662)	ENSOGAG00000008401	ENSOGAG00000030012 #22	ENSOGAG00000009732	HLA-DRA (ENSOGAG00000008398)	BTNL2 (ENSOGAG00000008396)	ENSOGAG00000025050	ENSOGAG00000013069	ENSOGAG00000025825	NOTCH4 (ENSOGAG00000010193)	GPSM3 (ENSOGAG00000032276)	PBX2 (ENSOGAG00000016303)	AGER (ENSOGAG00000030141)	RNF5 (ENSOGAG00000031466)	AGPAT1 (ENSOGAG00000010187)	EGFL8 (ENSOGAG00000029110)	PPT2 (ENSOGAG00000010185)	PRRT1 (ENSOGAG00000010181)
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00950000183091.B.b.a.a ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Tree shrew	MODERN SPECIES	7887															CSTF1 (ENSTBEG00000013454) #21	AURKA (ENSTBEG00000013284) #22	FAM210B (ENSTBEG00000013227) #23
Glires	ANCESTRAL SPECIES	17	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00950000183091.B.b.a.a ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Rodentia	ANCESTRAL SPECIES	18	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00980000199289	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	664	1700021F07Rik (ENSMAUG00000021708)	ENSMAUG00000009751	Pmepa1 (ENSMAUG00000001177)	Zbp1 (ENSMAUG00000001095) #7	Pck1 (ENSMAUG00000020497) #8	ENSMAUG00000007706 #9	Rbm38 (ENSMAUG00000021211) #10	Rae1 (ENSMAUG00000015549) #11	Spo11 (ENSMAUG00000020198) #12	Bmp7 (ENSMAUG00000015344) #13	Tfap2c (ENSMAUG00000019572) #14	Gcnt7 (ENSMAUG00000001661) #18	Rtf2 (ENSMAUG00000007866) #19	Cass4 (ENSMAUG00000016962) #20	Cstf1 (ENSMAUG00000021501) #21	ENSMAUG00000008679 #22	Fam210b (ENSMAUG00000020693) #23	Mc3r (ENSMAUG00000006998)	Cbln4 (ENSMAUG00000013556) #24	ENSMAUG00000001483	Pfdn4 (ENSMAUG00000002277) #26	Cyp24a1 (ENSMAUG00000013246) #27	ENSMAUG00000015308 #28	ENSMAUG00000003995 #31	Zfp64 (ENSMAUG00000015438) #33	Sall4 (ENSMAUG00000015814) #34	Atp9a (ENSMAUG00000004916) #35	Nfatc2 (ENSMAUG00000011773) #37	Kcng1 (ENSMAUG00000015676)	Mocs3 (ENSMAUG00000007351)	Dpm1 (ENSMAUG00000016233)
Golden Hamster	MODERN SPECIES	632	Ccdc149 (ENSMAUG00000001813)	Dhx15 (ENSMAUG00000011535)	Ppargc1a (ENSMAUG00000011811)	ENSMAUG00000006861	ENSMAUG00000007935	Adgra3 (ENSMAUG00000012066)	ENSMAUG00000007284	Kcnip4 (ENSMAUG00000020538)	5730480H06Rik (ENSMAUG00000000592)	Slit2 (ENSMAUG00000011068)	ENSMAUG00000019848	Ncapg (ENSMAUG00000007532)	Fam184b (ENSMAUG00000021123)	ENSMAUG00000008581	Lap3 (ENSMAUG00000014239)	ENSMAUG00000013013 #22	Ldb2 (ENSMAUG00000019898)	Tapt1 (ENSMAUG00000020047)	Prom1 (ENSMAUG00000021517)	ENSMAUG00000008674	Fgfbp1 (ENSMAUG00000021288)	Cd38 (ENSMAUG00000010213)	Bst1 (ENSMAUG00000009435)	Fbxl5 (ENSMAUG00000021433)	Cc2d2a (ENSMAUG00000009103)	C1qtnf7 (ENSMAUG00000014427)	Cpeb2 (ENSMAUG00000012556)	Bod1l (ENSMAUG00000005686)	Nkx3-2 (ENSMAUG00000021195)	Rab28 (ENSMAUG00000008404)	Hs3st1 (ENSMAUG00000010930)
Chinese hamster chok1gshd	MODERN SPECIES	195	1700021F07Rik (ENSCGRG00001017573)	Pmepa1 (ENSCGRG00001016444)	Zbp1 (ENSCGRG00001015544) #7	Pck1 (ENSCGRG00001014463) #8	ENSCGRG00001013637 #9	Rbm38 (ENSCGRG00001012928) #10	Rae1 (ENSCGRG00001012313) #11	Spo11 (ENSCGRG00001009129) #12	Bmp7 (ENSCGRG00001005573) #13	Tfap2c (ENSCGRG00001000794) #14	Fam209 (ENSCGRG00001024477) #15	Gcnt7 (ENSCGRG00001024252) #18	Rtf2 (ENSCGRG00001024046) #19	Cass4 (ENSCGRG00001022964) #20	Cstf1 (ENSCGRG00001021492) #21	Aurka (ENSCGRG00001014225) #22	Fam210b (ENSCGRG00001013313) #23	Mc3r (ENSCGRG00001015997)	Cbln4 (ENSCGRG00001012538) #24	Dok5 (ENSCGRG00001011991) #25	Pfdn4 (ENSCGRG00001010542) #26	Cyp24a1 (ENSCGRG00001010160) #27	Bcas1 (ENSCGRG00001007157) #28	Zfp217 (ENSCGRG00001002600) #29	ENSCGRG00001007530 #30	Tshz2 (ENSCGRG00001000496) #31	ENSCGRG00001015533	Zfp64 (ENSCGRG00001020443) #33	Sall4 (ENSCGRG00001019569) #34	Atp9a (ENSCGRG00001017172) #35	Nfatc2 (ENSCGRG00001012491) #37
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Prairie vole	MODERN SPECIES	357	Pmepa1 (ENSMOCG00000012737)	Zbp1 (ENSMOCG00000019061) #7	Pck1 (ENSMOCG00000022228) #8	Ctcfl (ENSMOCG00000005492) #9	Rbm38 (ENSMOCG00000008715) #10	Rae1 (ENSMOCG00000009926) #11	Spo11 (ENSMOCG00000021312) #12	Bmp7 (ENSMOCG00000016476) #13	Tfap2c (ENSMOCG00000001600) #14	ENSMOCG00000000227	Fam209 (ENSMOCG00000021570) #15	Rtf2 (ENSMOCG00000021800) #19	Gcnt7 (ENSMOCG00000002404) #18	Cass4 (ENSMOCG00000002673) #20	Cstf1 (ENSMOCG00000022740) #21	Aurka (ENSMOCG00000005866) #22	Fam210b (ENSMOCG00000012454) #23	Mc3r (ENSMOCG00000008736)	Cbln4 (ENSMOCG00000002519) #24	Dok5 (ENSMOCG00000006196) #25	ENSMOCG00000013934	ENSMOCG00000000248	Cyp24a1 (ENSMOCG00000016929) #27	Bcas1 (ENSMOCG00000004294) #28	Zfp217 (ENSMOCG00000018704) #29	ENSMOCG00000013704 #31	Zfp64 (ENSMOCG00000004895) #33	Sall4 (ENSMOCG00000018245) #34	Atp9a (ENSMOCG00000016994) #35	Nfatc2 (ENSMOCG00000000259) #37	Kcng1 (ENSMOCG00000009238)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	17	Pmepa1 (ENSPEMG00000017336)	Zbp1 (ENSPEMG00000016060) #7	Pck1 (ENSPEMG00000020073) #8	Ctcfl (ENSPEMG00000019496) #9	Rbm38 (ENSPEMG00000029093) #10	Rae1 (ENSPEMG00000020004) #11	Spo11 (ENSPEMG00000019552) #12	Bmp7 (ENSPEMG00000019995) #13	Tfap2c (ENSPEMG00000016187) #14	Fam209 (ENSPEMG00000019342) #15	Gcnt7 (ENSPEMG00000019321) #18	Rtf2 (ENSPEMG00000019757) #19	Cass4 (ENSPEMG00000019504) #20	Cstf1 (ENSPEMG00000019660) #21	ENSPEMG00000027444 #22	ENSPEMG00000020059 #22	Fam210b (ENSPEMG00000025841) #23	Mc3r (ENSPEMG00000012765)	Cbln4 (ENSPEMG00000030725) #24	ENSPEMG00000027974	ENSPEMG00000030716	Dok5 (ENSPEMG00000022784) #25	Pfdn4 (ENSPEMG00000022289) #26	Cyp24a1 (ENSPEMG00000014776) #27	Bcas1 (ENSPEMG00000000354) #28	Zfp217 (ENSPEMG00000011097) #29	ENSPEMG00000029761 #30	Tshz2 (ENSPEMG00000029085) #31	ENSPEMG00000014233	Zfp64 (ENSPEMG00000014980) #33	Sall4 (ENSPEMG00000022706) #34
Northern American deer mouse	MODERN SPECIES	17	1700021F07Rik (ENSPEMG00000018608)	Pmepa1 (ENSPEMG00000017336)	Zbp1 (ENSPEMG00000016060) #7	Pck1 (ENSPEMG00000020073) #8	Ctcfl (ENSPEMG00000019496) #9	Rbm38 (ENSPEMG00000029093) #10	Rae1 (ENSPEMG00000020004) #11	Spo11 (ENSPEMG00000019552) #12	Bmp7 (ENSPEMG00000019995) #13	Tfap2c (ENSPEMG00000016187) #14	Fam209 (ENSPEMG00000019342) #15	Gcnt7 (ENSPEMG00000019321) #18	Rtf2 (ENSPEMG00000019757) #19	Cass4 (ENSPEMG00000019504) #20	Cstf1 (ENSPEMG00000019660) #21	ENSPEMG00000027444 #22	ENSPEMG00000020059 #22	Fam210b (ENSPEMG00000025841) #23	Mc3r (ENSPEMG00000012765)	Cbln4 (ENSPEMG00000030725) #24	ENSPEMG00000027974	ENSPEMG00000030716	Dok5 (ENSPEMG00000022784) #25	Pfdn4 (ENSPEMG00000022289) #26	Cyp24a1 (ENSPEMG00000014776) #27	Bcas1 (ENSPEMG00000000354) #28	Zfp217 (ENSPEMG00000011097) #29	ENSPEMG00000029761 #30	Tshz2 (ENSPEMG00000029085) #31	ENSPEMG00000014233	Zfp64 (ENSPEMG00000014980) #33
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Mus	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT01090000262946	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT01090000262946	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT01090000262956	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2975				Serpinb6d (ENSMSIG00000003590)	Serpinb6e (ENSMSIG00000003547)	Serpinb6c (ENSMSIG00000003508)	Serpinb6a (ENSMSIG00000003400)	Nqo2 (ENSMSIG00000003346)	Ripk1 (ENSMSIG00000003307)	Bphl (ENSMSIG00000003262)	Tubb2a (ENSMSIG00000003218)	Psmg4 (ENSMSIG00000003186)	Slc22a23 (ENSMSIG00000003104)	Pxdc1 (ENSMSIG00000003089)	Fam50b (ENSMSIG00000003082)	ENSMSIG00000003077 #22	Prpf4b (ENSMSIG00000003035)	Fam217a (ENSMSIG00000002942)	Tex56 (ENSMSIG00000002912)	ENSMSIG00000002713
Steppe mouse	MODERN SPECIES	3237	1700021F07Rik (ENSMSIG00000026800)	Pmepa1 (ENSMSIG00000026776)	Zbp1 (ENSMSIG00000026758) #7	Pck1 (ENSMSIG00000026751) #8	Ctcfl (ENSMSIG00000026727) #9	Rbm38 (ENSMSIG00000026715) #10	Rae1 (ENSMSIG00000026688) #11	Spo11 (ENSMSIG00000026627) #12	Bmp7 (ENSMSIG00000026606) #13	Tfap2c (ENSMSIG00000026572) #14	Fam209 (ENSMSIG00000026567) #15	Gcnt7 (ENSMSIG00000026556) #18	Rtf2 (ENSMSIG00000026543) #19	Cass4 (ENSMSIG00000026462) #20	Cstf1 (ENSMSIG00000026444) #21	ENSMSIG00000026412 #22	Fam210b (ENSMSIG00000026403) #23	Mc3r (ENSMSIG00000026397)
spretus	MODERN SPECIES	11	1700021F07Rik (MGP_SPRETEiJ_G0025670)	Pmepa1 (MGP_SPRETEiJ_G0025669)	Zbp1 (MGP_SPRETEiJ_G0025668) #7	Pck1 (MGP_SPRETEiJ_G0025667) #8	Ctcfl (MGP_SPRETEiJ_G0025666) #9	Rbm38 (MGP_SPRETEiJ_G0025665) #10	Rae1 (MGP_SPRETEiJ_G0025664) #11	Spo11 (MGP_SPRETEiJ_G0025663) #12	Bmp7 (MGP_SPRETEiJ_G0025662) #13	Tfap2c (MGP_SPRETEiJ_G0025661) #14	Fam209 (MGP_SPRETEiJ_G0025660) #15	Gcnt7 (MGP_SPRETEiJ_G0025659) #18	Rtf2 (MGP_SPRETEiJ_G0025658) #19	Cass4 (MGP_SPRETEiJ_G0025657) #20	Cstf1 (MGP_SPRETEiJ_G0025656) #21	Aurka (MGP_SPRETEiJ_G0025655) #22	Fam210b (MGP_SPRETEiJ_G0025654) #23	Mc3r (MGP_SPRETEiJ_G0025653)	Cbln4 (MGP_SPRETEiJ_G0025652) #24	Dok5 (MGP_SPRETEiJ_G0025651) #25	MGP_SPRETEiJ_G0025650	Pfdn4 (MGP_SPRETEiJ_G0025649) #26	Cyp24a1 (MGP_SPRETEiJ_G0025648) #27	Bcas1 (MGP_SPRETEiJ_G0025647) #28	Zfp217 (MGP_SPRETEiJ_G0025646) #29	Tshz2 (MGP_SPRETEiJ_G0025645) #31	Zfp64 (MGP_SPRETEiJ_G0025644) #33	Sall4 (MGP_SPRETEiJ_G0025643) #34	Atp9a (MGP_SPRETEiJ_G0025642) #35	Nfatc2 (MGP_SPRETEiJ_G0025641) #37	Kcng1 (MGP_SPRETEiJ_G0025640)
Mouse	MODERN SPECIES	11	1700021F07Rik (ENSMUSG00000027518)	Pmepa1 (ENSMUSG00000038400)	Zbp1 (ENSMUSG00000027514) #7	Pck1 (ENSMUSG00000027513) #8	Ctcfl (ENSMUSG00000070495) #9	Rbm38 (ENSMUSG00000027510) #10	Rae1 (ENSMUSG00000027509) #11	Spo11 (ENSMUSG00000005883) #12	Bmp7 (ENSMUSG00000008999) #13	Tfap2c (ENSMUSG00000028640) #14	Fam209 (ENSMUSG00000027505) #15	Gcnt7 (ENSMUSG00000074569) #18	Rtf2 (ENSMUSG00000027502) #19	Cass4 (ENSMUSG00000074570) #20	Cstf1 (ENSMUSG00000027498) #21	Aurka (ENSMUSG00000027496) #22	Fam210b (ENSMUSG00000027495) #23	Mc3r (ENSMUSG00000038537)	Cbln4 (ENSMUSG00000067578) #24	Dok5 (ENSMUSG00000027560) #25	Pfdn4 (ENSMUSG00000052033) #26	Cyp24a1 (ENSMUSG00000038567) #27	Bcas1 (ENSMUSG00000013523) #28	Zfp217 (ENSMUSG00000052056) #29	Tshz2 (ENSMUSG00000047907) #31	Zfp64 (ENSMUSG00000027551) #33	Sall4 (ENSMUSG00000027547) #34	Atp9a (ENSMUSG00000027546) #35	Nfatc2 (ENSMUSG00000027544) #37	Kcng1 (ENSMUSG00000074575)	Mocs3 (ENSMUSG00000074576)
Ryukyu mouse	MODERN SPECIES	11	1700021F07Rik (MGP_CAROLIEiJ_G0024750)	Pmepa1 (MGP_CAROLIEiJ_G0024749)	Zbp1 (MGP_CAROLIEiJ_G0024748) #7	Pck1 (MGP_CAROLIEiJ_G0024747) #8	Ctcfl (MGP_CAROLIEiJ_G0024746) #9	Rbm38 (MGP_CAROLIEiJ_G0024745) #10	Rae1 (MGP_CAROLIEiJ_G0024744) #11	Spo11 (MGP_CAROLIEiJ_G0024743) #12	Bmp7 (MGP_CAROLIEiJ_G0024742) #13	Tfap2c (MGP_CAROLIEiJ_G0024741) #14	Fam209 (MGP_CAROLIEiJ_G0024740) #15	Gcnt7 (MGP_CAROLIEiJ_G0024739) #18	Rtf2 (MGP_CAROLIEiJ_G0024738) #19	Cass4 (MGP_CAROLIEiJ_G0024737) #20	Cstf1 (MGP_CAROLIEiJ_G0024736) #21	Aurka (MGP_CAROLIEiJ_G0024735) #22	Fam210b (MGP_CAROLIEiJ_G0024734) #23	Mc3r (MGP_CAROLIEiJ_G0024733)	Cbln4 (MGP_CAROLIEiJ_G0024732) #24	Dok5 (MGP_CAROLIEiJ_G0024731) #25	MGP_CAROLIEiJ_G0024730	MGP_CAROLIEiJ_G0024729 #26	Cyp24a1 (MGP_CAROLIEiJ_G0024728) #27	Bcas1 (MGP_CAROLIEiJ_G0024727) #28	Zfp217 (MGP_CAROLIEiJ_G0024726) #29	Tshz2 (MGP_CAROLIEiJ_G0024725) #31	Zfp64 (MGP_CAROLIEiJ_G0024724) #33	Sall4 (MGP_CAROLIEiJ_G0024723) #34	Atp9a (MGP_CAROLIEiJ_G0024722) #35	Nfatc2 (MGP_CAROLIEiJ_G0024721) #37	Kcng1 (MGP_CAROLIEiJ_G0024720)
Shrew mouse	MODERN SPECIES	16	1700021F07Rik (MGP_PahariEiJ_G0026191)	Pmepa1 (MGP_PahariEiJ_G0026190)	MGP_PahariEiJ_G0026189 #7	Pck1 (MGP_PahariEiJ_G0026188) #8	Ctcfl (MGP_PahariEiJ_G0026187) #9	Rbm38 (MGP_PahariEiJ_G0026186) #10	Rae1 (MGP_PahariEiJ_G0026185) #11	Spo11 (MGP_PahariEiJ_G0026184) #12	Bmp7 (MGP_PahariEiJ_G0026183) #13	Tfap2c (MGP_PahariEiJ_G0026182) #14	Fam209 (MGP_PahariEiJ_G0026181) #15	Gcnt7 (MGP_PahariEiJ_G0026180) #18	Rtf2 (MGP_PahariEiJ_G0026179) #19	Cass4 (MGP_PahariEiJ_G0026178) #20	Cstf1 (MGP_PahariEiJ_G0026177) #21	Aurka (MGP_PahariEiJ_G0026176) #22	Fam210b (MGP_PahariEiJ_G0026175) #23	Mc3r (MGP_PahariEiJ_G0026174)	Cbln4 (MGP_PahariEiJ_G0026173) #24	Dok5 (MGP_PahariEiJ_G0026172) #25	MGP_PahariEiJ_G0026171	Pfdn4 (MGP_PahariEiJ_G0026170) #26	Cyp24a1 (MGP_PahariEiJ_G0026169) #27	Bcas1 (MGP_PahariEiJ_G0026168) #28	Zfp217 (MGP_PahariEiJ_G0026167) #29	Tshz2 (MGP_PahariEiJ_G0026166) #31	Zfp64 (MGP_PahariEiJ_G0026165) #33	Sall4 (MGP_PahariEiJ_G0026164) #34	Atp9a (MGP_PahariEiJ_G0026163) #35	Nfatc2 (MGP_PahariEiJ_G0026162) #37	Kcng1 (MGP_PahariEiJ_G0026161)
Rat	MODERN SPECIES	13	Pmepa1 (ENSRNOG00000050404)	Zbp1 (ENSRNOG00000006314) #7	Pck1 (ENSRNOG00000028616) #8	Ctcfl (ENSRNOG00000028661) #9	Uchl3 (ENSRNOG00000065893)	Rbm38 (ENSRNOG00000006420) #10	Rae1 (ENSRNOG00000021295) #11	Spo11 (ENSRNOG00000006732) #12	Bmp7 (ENSRNOG00000053384) #13	Tfap2c (ENSRNOG00000005246) #14	Fam209 (ENSRNOG00000005235) #15	Gcnt7 (ENSRNOG00000063099) #18	Rtfdc1 (ENSRNOG00000005083) #19	Cass4 (ENSRNOG00000021560) #20	Cstf1 (ENSRNOG00000004775) #21	Aurka (ENSRNOG00000004479) #22	Fam210b (ENSRNOG00000004466) #23	Mc3r (ENSRNOG00000004451)	Cbln4 (ENSRNOG00000004372) #24	ENSRNOG00000065655	Dok5 (ENSRNOG00000013196) #25	Pfdn4 (ENSRNOG00000050932) #26	Cyp24a1 (ENSRNOG00000013062) #27	ENSRNOG00000064257	ENSRNOG00000063885	Bcas1 (ENSRNOG00000012906) #28	Zfp217 (ENSRNOG00000021787) #29	ENSRNOG00000064332 #30	Tshz2 (ENSRNOG00000048433) #31	ENSRNOG00000067568	Zfp93 (ENSRNOG00000012762) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	460	Pmepa1 (ENSNGAG00000005913)	Zbp1 (ENSNGAG00000023407) #7	Pck1 (ENSNGAG00000012480) #8	Ctcfl (ENSNGAG00000001461) #9	ENSNGAG00000012622	ENSNGAG00000014017 #10	Rae1 (ENSNGAG00000016278) #11	Spo11 (ENSNGAG00000018412) #12	Bmp7 (ENSNGAG00000024076) #13	Tfap2c (ENSNGAG00000021153) #14	Fam209 (ENSNGAG00000023427) #15	Rtf2 (ENSNGAG00000023717) #19	Gcnt7 (ENSNGAG00000014678) #18	Cass4 (ENSNGAG00000011741) #20	Cstf1 (ENSNGAG00000020130) #21	Aurka (ENSNGAG00000022340) #22	Fam210b (ENSNGAG00000023184) #23	ENSNGAG00000023736
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	107						Pmepa1 (ENSJJAG00000000478)	Pck1 (ENSJJAG00000011814) #8	ENSJJAG00000022019	ENSJJAG00000016299 #10	ENSJJAG00000018364 #11	Bmp7 (ENSJJAG00000019966) #13	ENSJJAG00000007606 #14	Gcnt7 (ENSJJAG00000020200) #18	Cass4 (ENSJJAG00000024186) #20	Cstf1 (ENSJJAG00000016089) #21	ENSJJAG00000020175 #22	Mc3r (ENSJJAG00000002102)	ENSJJAG00000017187	Dok5 (ENSJJAG00000020159) #25	Bcas1 (ENSJJAG00000014333) #28	ENSJJAG00000002075 #30	ENSJJAG00000002372 #31	Zfp64 (ENSJJAG00000013954) #33	Sall4 (ENSJJAG00000020688) #34	Atp9a (ENSJJAG00000014602) #35	Nfatc2 (ENSJJAG00000022151) #37	Kcng1 (ENSJJAG00000012496)	Mocs3 (ENSJJAG00000001507)	Dpm1 (ENSJJAG00000015047)	Adnp (ENSJJAG00000022527)	Ptpn1 (ENSJJAG00000023377)
Lesser Egyptian jerboa	MODERN SPECIES	171	Osbpl2 (ENSJJAG00000011104)	ENSJJAG00000011363	Lama5 (ENSJJAG00000014033)	Rps21 (ENSJJAG00000016454)	Cables2 (ENSJJAG00000017409)	Gata5 (ENSJJAG00000018164)	Slco4a1 (ENSJJAG00000018715)	Ntsr1 (ENSJJAG00000019264)	Mrgbp (ENSJJAG00000019784)	Ogfr (ENSJJAG00000020054)	Col9a3 (ENSJJAG00000020792)	ENSJJAG00000022001	Dido1 (ENSJJAG00000022740)	Gid8 (ENSJJAG00000000120)	Slc17a9 (ENSJJAG00000000563)	ENSJJAG00000001169 #22	Bhlhe23 (ENSJJAG00000013438)	Ythdf1 (ENSJJAG00000013589)	Birc7 (ENSJJAG00000014210)	Nkain4 (ENSJJAG00000014525)	Arfgap1 (ENSJJAG00000015383)	ENSJJAG00000016700	Chrna4 (ENSJJAG00000018512)	Kcnq2 (ENSJJAG00000019808)	Eef1a2 (ENSJJAG00000020185)	Ppdpf (ENSJJAG00000020293)	Ptk6 (ENSJJAG00000020457)	Srms (ENSJJAG00000020649)	Fndc11 (ENSJJAG00000021148)	Helz2 (ENSJJAG00000021775)	Gmeb2 (ENSJJAG00000022801)
Kangaroo rat	MODERN SPECIES	394	Vapb (ENSDORG00000028488)	Rab22a (ENSDORG00000001998)	ENSDORG00000005274	1700021F07Rik (ENSDORG00000005273)	Pck1 (ENSDORG00000010927) #8	ENSDORG00000024827	Rae1 (ENSDORG00000003758) #11	Spo11 (ENSDORG00000003757) #12	Bmp7 (ENSDORG00000000717) #13	Tfap2c (ENSDORG00000013943) #14	Fam209 (ENSDORG00000010389) #15	Rtf2 (ENSDORG00000028729) #19	Gcnt7 (ENSDORG00000007793) #18	Cass4 (ENSDORG00000007789) #20	Cstf1 (ENSDORG00000008546) #21	Aurka (ENSDORG00000008545) #22	Fam210b (ENSDORG00000008544) #23	Mc3r (ENSDORG00000001167)	ENSDORG00000029002	Cbln4 (ENSDORG00000009501) #24	Dok5 (ENSDORG00000007241) #25	ENSDORG00000006644	Cyp24a1 (ENSDORG00000016127) #27	Bcas1 (ENSDORG00000002327) #28	Zfp217 (ENSDORG00000023982) #29	ENSDORG00000027670 #30	ENSDORG00000028111 #31	Zfp64 (ENSDORG00000024389) #33	Sall4 (ENSDORG00000012841) #34	Atp9a (ENSDORG00000008732) #35	Nfatc2 (ENSDORG00000028181) #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00950000183091.B.a.b ##11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.ac.a #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.ac.a.b #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Degu	DUPLICATION
Degu	MODERN SPECIES	55	ERCC3 (ENSODEG00000005795)	MAP3K2 (ENSODEG00000006030)	PROC (ENSODEG00000005293)	IWS1 (ENSODEG00000006476)	MYO7B (ENSODEG00000006919)	GPR17 (ENSODEG00000019336)	LIMS2 (ENSODEG00000005725)	ENSODEG00000019237	WDR33 (ENSODEG00000005785)	POLR2D (ENSODEG00000005262)	AMMECR1L (ENSODEG00000005128)	SAP130 (ENSODEG00000005382)	UGGT1 (ENSODEG00000005315)	HS6ST1 (ENSODEG00000006959)	ENSODEG00000006817	ENSODEG00000006597 #22	ENSODEG00000006371
Degu	MODERN SPECIES	118				PMEPA1 (ENSODEG00000007664)	PCK1 (ENSODEG00000007233) #8	RBM38 (ENSODEG00000007980) #10	ENSODEG00000005687 #11	SPO11 (ENSODEG00000006573) #12	BMP7 (ENSODEG00000005399) #13	ENSODEG00000005762 #14	ENSODEG00000006029 #15	RTF2 (ENSODEG00000005634) #19	GCNT7 (ENSODEG00000006051) #18	CASS4 (ENSODEG00000006198) #20	ENSODEG00000019482	ENSODEG00000007572 #22	FAM210B (ENSODEG00000005961) #23	MC3R (ENSODEG00000019495)	ENSODEG00000007202	CBLN4 (ENSODEG00000008098) #24	DOK5 (ENSODEG00000009072) #25	ENSODEG00000005992 #26	CYP24A1 (ENSODEG00000005827) #27	ENSODEG00000006282	ZNF217 (ENSODEG00000006753) #29	ENSODEG00000019595 #30	ENSODEG00000019550 #31	ZFP64 (ENSODEG00000005735) #33	ENSODEG00000006564	ENSODEG00000006762 #34	ATP9A (ENSODEG00000006908) #35
Long-tailed chinchilla	MODERN SPECIES	152	PMEPA1 (ENSCLAG00000010850)	ZBP1 (ENSCLAG00000012154) #7	PCK1 (ENSCLAG00000008119) #8	CTCFL (ENSCLAG00000004596) #9	RBM38 (ENSCLAG00000005906) #10	RAE1 (ENSCLAG00000006500) #11	SPO11 (ENSCLAG00000008712) #12	BMP7 (ENSCLAG00000006692) #13	ENSCLAG00000006921	TFAP2C (ENSCLAG00000008347) #14	ENSCLAG00000005877 #15	RTF2 (ENSCLAG00000005946) #19	GCNT7 (ENSCLAG00000006522) #18	CASS4 (ENSCLAG00000005692) #20	CSTF1 (ENSCLAG00000006676) #21	AURKA (ENSCLAG00000009511) #22	FAM210B (ENSCLAG00000005865) #23	MC3R (ENSCLAG00000017777)	CBLN4 (ENSCLAG00000006156) #24	DOK5 (ENSCLAG00000009152) #25	ENSCLAG00000009443 #26	CYP24A1 (ENSCLAG00000006942) #27	BCAS1 (ENSCLAG00000006299) #28	ENSCLAG00000006928 #29	ENSCLAG00000017696 #30	TSHZ2 (ENSCLAG00000009630) #31	ZFP64 (ENSCLAG00000008329) #33	SALL4 (ENSCLAG00000010479) #34	ATP9A (ENSCLAG00000010633) #35	NFATC2 (ENSCLAG00000006467) #37	KCNG1 (ENSCLAG00000006678)
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	96				PCK1 (ENSCPOG00000006584) #8	ENSCPOG00000006577 #9	RBM38 (ENSCPOG00000012781) #10	RAE1 (ENSCPOG00000008932) #11	SPO11 (ENSCPOG00000011677) #12	BMP7 (ENSCPOG00000035536) #13	TFAP2C (ENSCPOG00000023253) #14	RTF2 (ENSCPOG00000030139) #19	ENSCPOG00000024456 #15	GCNT7 (ENSCPOG00000035093) #18	CASS4 (ENSCPOG00000026525) #20	CSTF1 (ENSCPOG00000004957) #21	ENSCPOG00000006633 #22	FAM210B (ENSCPOG00000006630) #23	MC3R (ENSCPOG00000024876)	CBLN4 (ENSCPOG00000011681) #24	ENSCPOG00000010289	DOK5 (ENSCPOG00000012780) #25	ENSCPOG00000032848 #26	CYP24A1 (ENSCPOG00000010077) #27	BCAS1 (ENSCPOG00000009194) #28	ZNF217 (ENSCPOG00000027399) #29	ENSCPOG00000038107 #30	TSHZ2 (ENSCPOG00000002986) #31	ZFP64 (ENSCPOG00000025271) #33	ENSCPOG00000036300 #34	ENSCPOG00000038489 #34	ATP9A (ENSCPOG00000012747) #35
Guinea pig	MODERN SPECIES	71	ENSCPOG00000040736	ENSCPOG00000038759	ENSCPOG00000037814	ENSCPOG00000030448	ENSCPOG00000024485	ENSCPOG00000011144	ENSCPOG00000031130	ENSCPOG00000030723	ENSCPOG00000020404	ENSCPOG00000039008	ENSCPOG00000004045	ENSCPOG00000024827	ENSCPOG00000038869	ENSCPOG00000036058	ENSCPOG00000011962	ENSCPOG00000021609 #22	ENSCPOG00000025297	ENSCPOG00000011107	ENSCPOG00000021398	ENSCPOG00000030442	ENSCPOG00000033629	ENSCPOG00000026243	ENSCPOG00000040701	ENSCPOG00000015632	ENSCPOG00000006829	ENSCPOG00000030324	ENSCPOG00000027035	ENSCPOG00000032059	ENSCPOG00000035512	ENSCPOG00000033351	ENSCPOG00000034510
Naked mole-rat female	MODERN SPECIES	6	ENSHGLG00000041408	ZNF512B (ENSHGLG00000014817)	SAMD10 (ENSHGLG00000007557)	PRPF6 (ENSHGLG00000009222)	SOX18 (ENSHGLG00000041364)	TCEA2 (ENSHGLG00000006061)	RGS19 (ENSHGLG00000043898)	LKAAEAR1 (ENSHGLG00000038808)	OPRL1 (ENSHGLG00000010426)	NPBWR2 (ENSHGLG00000021250)	ENSHGLG00000019065	ENSHGLG00000007491	ENSHGLG00000049141	ENSHGLG00000016990 #20	CSTF1 (ENSHGLG00000036531) #21	AURKA (ENSHGLG00000018440) #22	FAM210B (ENSHGLG00000037066) #23	ENSHGLG00000038187	ENSHGLG00000003479	ENSHGLG00000015306	ENSHGLG00000014810	ENSHGLG00000014853 #24	ENSHGLG00000042983	ENSHGLG00000014904	DOK5 (ENSHGLG00000043654) #25	ENSHGLG00000034941 #26	ENSHGLG00000049516 #28	ENSHGLG00000015145 #28	ENSHGLG00000048236 #30	ENSHGLG00000050175	ENSHGLG00000049099 #31
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Marmotini_b	ANCESTRAL SPECIES	29	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	76	MLIP (ENSSTOG00000021067)	TINAG (ENSSTOG00000011224)	FAM83B (ENSSTOG00000004736)	HCRTR2 (ENSSTOG00000006839)	GFRAL (ENSSTOG00000006853)	HMGCLL1 (ENSSTOG00000003393)	BMP5 (ENSSTOG00000002425)	COL21A1 (ENSSTOG00000019807)	DST (ENSSTOG00000004148)	BEND6 (ENSSTOG00000024640)	KIAA1586 (ENSSTOG00000025191)	ENSSTOG00000032091	BAG2 (ENSSTOG00000010958)	RAB23 (ENSSTOG00000010962)	PRIM2 (ENSSTOG00000024347)	ENSSTOG00000030615 #22	ENSSTOG00000009838	KHDRBS2 (ENSSTOG00000011529)	LGSN (ENSSTOG00000015471)	ENSSTOG00000032419	ENSSTOG00000030321	PHF3 (ENSSTOG00000025998)
Squirrel	MODERN SPECIES	474										TFAP2C (ENSSTOG00000014299) #14	ENSSTOG00000021790 #15	GCNT7 (ENSSTOG00000012001) #18	RTF2 (ENSSTOG00000020726) #19	CASS4 (ENSSTOG00000011983) #20	CSTF1 (ENSSTOG00000021271) #21	ENSSTOG00000011958 #22	FAM210B (ENSSTOG00000011956) #23	MC3R (ENSSTOG00000022025)
Arctic ground squirrel	MODERN SPECIES	342		C20orf85 (ENSUPAG00010004748)	PMEPA1 (ENSUPAG00010004754)	ZBP1 (ENSUPAG00010004758) #7	PCK1 (ENSUPAG00010004761) #8	CTCFL (ENSUPAG00010004786) #9	RBM38 (ENSUPAG00010005035) #10	RAE1 (ENSUPAG00010005042) #11	SPO11 (ENSUPAG00010005062) #12	BMP7 (ENSUPAG00010005102) #13	TFAP2C (ENSUPAG00010005104) #14	RTF2 (ENSUPAG00010005110) #19	GCNT7 (ENSUPAG00010005117) #18	CASS4 (ENSUPAG00010005120) #20	CSTF1 (ENSUPAG00010005153) #21	AURKA (ENSUPAG00010005160) #22	FAM210B (ENSUPAG00010005166) #23	MC3R (ENSUPAG00010005175)	CBLN4 (ENSUPAG00010005179) #24
Alpin marmot	MODERN SPECIES		C20orf85 (ENSMMMG00000008838)	PMEPA1 (ENSMMMG00000008827)	ZBP1 (ENSMMMG00000008783) #7	PCK1 (ENSMMMG00000008769) #8	ENSMMMG00000008738 #9	RBM38 (ENSMMMG00000008726) #10	RAE1 (ENSMMMG00000008713) #11	SPO11 (ENSMMMG00000008700) #12	BMP7 (ENSMMMG00000008665) #13	TFAP2C (ENSMMMG00000008643) #14	ENSMMMG00000008638 #15	GCNT7 (ENSMMMG00000008630) #18	RTF2 (ENSMMMG00000008617) #19	CASS4 (ENSMMMG00000008599) #20	CSTF1 (ENSMMMG00000008566) #21	AURKA (ENSMMMG00000008526) #22	FAM210B (ENSMMMG00000008521) #23	MC3R (ENSMMMG00000008520)	CBLN4 (ENSMMMG00000008501) #24	DOK5 (ENSMMMG00000008468) #25	PFDN4 (ENSMMMG00000008431) #26	CYP24A1 (ENSMMMG00000008409) #27	BCAS1 (ENSMMMG00000008267) #28	ZNF217 (ENSMMMG00000008233) #29	ENSMMMG00000008228 #30	TSHZ2 (ENSMMMG00000008206) #31	ZFP64 (ENSMMMG00000008125) #33	SALL4 (ENSMMMG00000008074) #34	ATP9A (ENSMMMG00000007891) #35	ENSMMMG00000007852 #37	KCNG1 (ENSMMMG00000007813)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	15	ZNF131 (ENSSVLG00005011245)	NIM1K (ENSSVLG00005011195)	ENSSVLG00005011087	CCL28 (ENSSVLG00005010999)	TMEM267 (ENSSVLG00005010958)	C5orf34 (ENSSVLG00005010862)	ENSSVLG00005010623	NNT (ENSSVLG00005010535)	FGF10 (ENSSVLG00005010487)	MRPS30 (ENSSVLG00005010453)	HCN1 (ENSSVLG00005010333)	ENSSVLG00005010286	EMB (ENSSVLG00005010153)	PARP8 (ENSSVLG00005009527)	ISL1 (ENSSVLG00005009398)	ENSSVLG00005009370 #22	ENSSVLG00005009354	PELO (ENSSVLG00005009325)	ITGA1 (ENSSVLG00005009298)	ITGA2 (ENSSVLG00005009124)	MOCS2 (ENSSVLG00005009062)	FST (ENSSVLG00005008975)	ENSSVLG00005008918	ENSSVLG00005008898	ARL15 (ENSSVLG00005008865)	HSPB3 (ENSSVLG00005008839)	ENSSVLG00005008821	ENSSVLG00005008805	ESM1 (ENSSVLG00005008786)	GZMK (ENSSVLG00005008745)	GZMA (ENSSVLG00005008704)
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005006905	ENSSVLG00005006876	ENSSVLG00005006819	ENSSVLG00005006785	ENSSVLG00005006757	ENSSVLG00005006676	ILK (ENSSVLG00005006591)	ENSSVLG00005006530	TPP1 (ENSSVLG00005006235)	DCHS1 (ENSSVLG00005006133)	ENSSVLG00005006101	ENSSVLG00005006080	ENSSVLG00005006064	ENSSVLG00005006043	ENSSVLG00005006008	ENSSVLG00005005978 #22	ENSSVLG00005005953	ENSSVLG00005005924	ENSSVLG00005005882	ENSSVLG00005005850	ENSSVLG00005005822	ENSSVLG00005005794	ENSSVLG00005005784	ENSSVLG00005005774	OR6A2 (ENSSVLG00005005765)	ENSSVLG00005005753	ENSSVLG00005005728	OR10A4 (ENSSVLG00005005708)	OR2D2 (ENSSVLG00005005688)	ZNF215 (ENSSVLG00005005660)	ZNF214 (ENSSVLG00005005631)
Eurasian red squirrel	MODERN SPECIES	11	C20orf85 (ENSSVLG00005001802)	PMEPA1 (ENSSVLG00005001767)	ENSSVLG00005001739 #7	PCK1 (ENSSVLG00005001714) #8	CTCFL (ENSSVLG00005001655) #9	RBM38 (ENSSVLG00005001602) #10	RAE1 (ENSSVLG00005001577) #11	SPO11 (ENSSVLG00005001490) #12	BMP7 (ENSSVLG00005001445) #13	ENSSVLG00005001414 #14	ENSSVLG00005001400 #15	GCNT7 (ENSSVLG00005001383) #18	RTF2 (ENSSVLG00005001366) #19	CASS4 (ENSSVLG00005001328) #20	CSTF1 (ENSSVLG00005001285) #21	ENSSVLG00005001248 #22	FAM210B (ENSSVLG00005001217) #23	MC3R (ENSSVLG00005001203)	ENSSVLG00005001189	ENSSVLG00005001173	CBLN4 (ENSSVLG00005001167) #24	DOK5 (ENSSVLG00005001133) #25	PFDN4 (ENSSVLG00005001111) #26	CYP24A1 (ENSSVLG00005001045) #27	BCAS1 (ENSSVLG00005000986) #28	ZNF217 (ENSSVLG00005000945) #29	ENSSVLG00005000930 #30	ENSSVLG00005000915	TSHZ2 (ENSSVLG00005000893) #31	ZFP64 (ENSSVLG00005000833) #33	ENSSVLG00005000761
Lagomorpha	ANCESTRAL SPECIES	158										ENSGT00950000182848.c.b.a.b #14	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000169372	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34
Rabbit	MODERN SPECIES	445											TFAP2C (ENSOCUG00000010996) #14	RTF2 (ENSOCUG00000017902) #19	GCNT7 (ENSOCUG00000017904) #18	CASS4 (ENSOCUG00000017901) #20	ENSOCUG00000035020	AURKA (ENSOCUG00000017898) #22	ENSOCUG00000017897 #23	MC3R (ENSOCUG00000010002)	CBLN4 (ENSOCUG00000000072) #24	DOK5 (ENSOCUG00000009223) #25	ENSOCUG00000025205	ENSOCUG00000004940 #26	CYP24A1 (ENSOCUG00000004935) #27	ENSOCUG00000033518	BCAS1 (ENSOCUG00000004927) #28	ZNF217 (ENSOCUG00000011363) #29	ENSOCUG00000033970 #30	TSHZ2 (ENSOCUG00000002587) #31	ENSOCUG00000029581 #33	ENSOCUG00000032290 #33	SALL4 (ENSOCUG00000011797) #34
Pika	MODERN SPECIES	5082												ENSOPRG00000008678 #15	RTF2 (ENSOPRG00000008658) #19	CASS4 (ENSOPRG00000008646) #20	CSTF1 (ENSOPRG00000008635) #21	ENSOPRG00000008620 #22
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Eulipotyphla	ANCESTRAL SPECIES	1985																ENSGT00940000154900 #22	ENSGT00940000156134 #23
Hedgehog	MODERN SPECIES	2355																AURKA (ENSEEUG00000002801) #22	FAM210B (ENSEEUG00000002797) #23
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Suina	ANCESTRAL SPECIES	9	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Pig	DUPLICATION
Pig	MODERN SPECIES	8	PMEPA1 (ENSSSCG00000034259)	ZBP1 (ENSSSCG00000007508) #7	PCK1 (ENSSSCG00000007507) #8	CTCFL (ENSSSCG00000007505) #9	RBM38 (ENSSSCG00000007504) #10	RAE1 (ENSSSCG00000007503) #11	SPO11 (ENSSSCG00000007502) #12	BMP7 (ENSSSCG00000007501) #13	ENSSSCG00000007500	TFAP2C (ENSSSCG00000007499) #14	FAM209B (ENSSSCG00000007498) #15	GCNT7 (ENSSSCG00000007497) #18	RTF2 (ENSSSCG00000007496) #19	CASS4 (ENSSSCG00000007495) #20	CSTF1 (ENSSSCG00000007494) #21	ENSSSCG00000007493 #22	FAM210B (ENSSSCG00000007492) #23	MC3R (ENSSSCG00000007491)	CBLN4 (ENSSSCG00000007490) #24	ENSSSCG00000047911	ENSSSCG00000047657	ENSSSCG00000041198	ENSSSCG00000030971	DOK5 (ENSSSCG00000007488) #25	PFDN4 (ENSSSCG00000007487) #26	CYP24A1 (ENSSSCG00000007486) #27	BCAS1 (ENSSSCG00000007485) #28	ZNF217 (ENSSSCG00000007484) #29	ENSSSCG00000062653 #30	ZFP64 (ENSSSCG00000058830) #33	ENSSSCG00000007481 #33
Pig	MODERN SPECIES	15	ENSSSCG00000001790	TMC3 (ENSSSCG00000001789)	STARD5 (ENSSSCG00000001788)	IL16 (ENSSSCG00000001787)	CFAP161 (ENSSSCG00000001786)	TLNRD1 (ENSSSCG00000037209)	MESD (ENSSSCG00000021587)	CEMIP (ENSSSCG00000038929)	ABHD17C (ENSSSCG00000001782)	ARNT2 (ENSSSCG00000040288)	CTXND1 (ENSSSCG00000056088)	FAH (ENSSSCG00000001780)	ZFAND6 (ENSSSCG00000001779)	BCL2A1 (ENSSSCG00000040010)	MTHFS (ENSSSCG00000038708)	ENSSSCG00000001776 #22	MINAR1 (ENSSSCG00000001775)	TMED3 (ENSSSCG00000001773)	ANKRD34C (ENSSSCG00000032430)	RASGRF1 (ENSSSCG00000001771)	CTSH (ENSSSCG00000001770)	MORF4L1 (ENSSSCG00000001769)	ENSSSCG00000041217	ADAMTS7 (ENSSSCG00000001765)	TBC1D2B (ENSSSCG00000027477)	SH2D7 (ENSSSCG00000001764)	CIB2 (ENSSSCG00000001762)	IDH3A (ENSSSCG00000032498)	ACSBG1 (ENSSSCG00000001760)	DNAJA4 (ENSSSCG00000037646)	SKIC8 (ENSSSCG00000001757)
Chacoan peccary	MODERN SPECIES	801	C20orf85 (ENSCWAG00000012049)	PMEPA1 (ENSCWAG00000012098)	ZBP1 (ENSCWAG00000012192) #7	PCK1 (ENSCWAG00000012380) #8	CTCFL (ENSCWAG00000012475) #9	RBM38 (ENSCWAG00000013092) #10	RAE1 (ENSCWAG00000013163) #11	SPO11 (ENSCWAG00000013226) #12	BMP7 (ENSCWAG00000013637) #13	TFAP2C (ENSCWAG00000013788) #14	ENSCWAG00000013848 #15	RTF2 (ENSCWAG00000013880) #19	GCNT7 (ENSCWAG00000013939) #18	CASS4 (ENSCWAG00000003694) #20	CSTF1 (ENSCWAG00000003789) #21	AURKA (ENSCWAG00000003823) #22	FAM210B (ENSCWAG00000003878) #23	MC3R (ENSCWAG00000003893)	ENSCWAG00000003907	CBLN4 (ENSCWAG00000003931) #24	ENSCWAG00000003959	DOK5 (ENSCWAG00000003971) #25	ENSCWAG00000004002 #26	CYP24A1 (ENSCWAG00000004053) #27	BCAS1 (ENSCWAG00000004272) #28	ZNF217 (ENSCWAG00000004422) #29	ENSCWAG00000004441 #30	TSHZ2 (ENSCWAG00000004473) #31	ZFP64 (ENSCWAG00000004512) #33	ENSCWAG00000004683	ENSCWAG00000004698
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000153664.A.a.m.b.b	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000153664.A.a.m.b.b	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a.g #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000153664.A.a.m.b.b	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a.g #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000153664.A.a.m.b.b	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a.g #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000153664.A.a.m.b.b	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a.g #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Narwhal	MODERN SPECIES	299	C20orf85 (ENSMMNG00015004638)	PMEPA1 (ENSMMNG00015004645)	ENSMMNG00015004653 #7	PCK1 (ENSMMNG00015004656) #8	ENSMMNG00015004668 #9	RBM38 (ENSMMNG00015004680) #10	RAE1 (ENSMMNG00015004687) #11	SPO11 (ENSMMNG00015004707) #12	BMP7 (ENSMMNG00015004731) #13	TFAP2C (ENSMMNG00015004743) #14	ENSMMNG00015004746 #15	RTF2 (ENSMMNG00015004751) #19	GCNT7 (ENSMMNG00015000042) #18	CASS4 (ENSMMNG00015000069) #20	CSTF1 (ENSMMNG00015000105) #21	AURKA (ENSMMNG00015000130) #22	FAM210B (ENSMMNG00015000159) #23	MC3R (ENSMMNG00015000177)	CBLN4 (ENSMMNG00015000195) #24	ENSMMNG00015000209	DOK5 (ENSMMNG00015000246) #25	PFDN4 (ENSMMNG00015000280) #26	CYP24A1 (ENSMMNG00015000319) #27	BCAS1 (ENSMMNG00015000370) #28	ENSMMNG00015000402	ZNF217 (ENSMMNG00015000437) #29	ENSMMNG00015000468 #30	TSHZ2 (ENSMMNG00015000487) #31	ZFP64 (ENSMMNG00015000539) #33	ENSMMNG00015000612 #34	ATP9A (ENSMMNG00015000677) #35
Beluga whale	MODERN SPECIES	36	C20orf85 (ENSDLEG00000001209)	PMEPA1 (ENSDLEG00000001226)	ZBP1 (ENSDLEG00000001241) #7	PCK1 (ENSDLEG00000001260) #8	CTCFL (ENSDLEG00000001310) #9	RBM38 (ENSDLEG00000001441) #10	RAE1 (ENSDLEG00000001455) #11	SPO11 (ENSDLEG00000001479) #12	BMP7 (ENSDLEG00000001532) #13	TFAP2C (ENSDLEG00000001553) #14	ENSDLEG00000001584 #15	RTFDC1 (ENSDLEG00000001595) #19	GCNT7 (ENSDLEG00000001619) #18	CASS4 (ENSDLEG00000001641) #20	CSTF1 (ENSDLEG00000001658) #21	AURKA (ENSDLEG00000001687) #22	FAM210B (ENSDLEG00000001702) #23	MC3R (ENSDLEG00000001714)	CBLN4 (ENSDLEG00000001722) #24	DOK5 (ENSDLEG00000001742) #25	PFDN4 (ENSDLEG00000001762) #26	CYP24A1 (ENSDLEG00000001776) #27	BCAS1 (ENSDLEG00000001828) #28	ENSDLEG00000001927	ZNF217 (ENSDLEG00000001937) #29	ENSDLEG00000001949 #30	TSHZ2 (ENSDLEG00000001964) #31	ZFP64 (ENSDLEG00000001976) #33	SALL4 (ENSDLEG00000001990) #34	ATP9A (ENSDLEG00000002017) #35	NFATC2 (ENSDLEG00000002111) #37
Vaquita	MODERN SPECIES	6	ENSPSNG00000018112	C20orf85 (ENSPSNG00000018366)	PMEPA1 (ENSPSNG00000018424)	ENSPSNG00000018539 #7	PCK1 (ENSPSNG00000018615) #8	ENSPSNG00000018701 #9	RBM38 (ENSPSNG00000018800) #10	RAE1 (ENSPSNG00000018876) #11	SPO11 (ENSPSNG00000018975) #12	BMP7 (ENSPSNG00000019245) #13	TFAP2C (ENSPSNG00000019329) #14	RTF2 (ENSPSNG00000019378) #19	GCNT7 (ENSPSNG00000019434) #18	CASS4 (ENSPSNG00000019490) #20	CSTF1 (ENSPSNG00000019520) #21	AURKA (ENSPSNG00000019542) #22	FAM210B (ENSPSNG00000019586) #23	MC3R (ENSPSNG00000019606)	CBLN4 (ENSPSNG00000019654) #24	DOK5 (ENSPSNG00000019697) #25	PFDN4 (ENSPSNG00000019742) #26	CYP24A1 (ENSPSNG00000019798) #27	BCAS1 (ENSPSNG00000019991) #28	ENSPSNG00000020059	ZNF217 (ENSPSNG00000020078) #29	ENSPSNG00000020106 #30	TSHZ2 (ENSPSNG00000020114) #31	ZFP64 (ENSPSNG00000020170) #33	SALL4 (ENSPSNG00000020296) #34	ATP9A (ENSPSNG00000020387) #35	NFATC2 (ENSPSNG00000020496) #37
Dolphin	MODERN SPECIES	4729												ENSTTRG00000014876 #15	GCNT7 (ENSTTRG00000014875) #18	RTFDC1 (ENSTTRG00000014873) #19	CSTF1 (ENSTTRG00000014871) #21	AURKA (ENSTTRG00000014869) #22	FAM210B (ENSTTRG00000014867) #23
Sperm whale	MODERN SPECIES	5	ANKRD60 (ENSPCTG00005018795)	RAB22A (ENSPCTG00005018849)	VAPB (ENSPCTG00005018875)	APCDD1L (ENSPCTG00005018939)	STX16 (ENSPCTG00005019004)	NPEPL1 (ENSPCTG00005019263)	RAE1 (ENSPCTG00005019375) ##11	SPO11 (ENSPCTG00005019409) #12	BMP7 (ENSPCTG00005019690) #13	TFAP2C (ENSPCTG00005019905) #14	ENSPCTG00005019969 #15	RTF2 (ENSPCTG00005019989) #19	GCNT7 (ENSPCTG00005020022) #18	CASS4 (ENSPCTG00005020081) #20	CSTF1 (ENSPCTG00005020190) #21	AURKA (ENSPCTG00005020213) #22	FAM210B (ENSPCTG00005020243) #23	MC3R (ENSPCTG00005020261)	CBLN4 (ENSPCTG00005020287) #24	ENSPCTG00005020310	ENSPCTG00005020331	DOK5 (ENSPCTG00005020398) #25	PFDN4 (ENSPCTG00005020437) #26	CYP24A1 (ENSPCTG00005020488) #27	BCAS1 (ENSPCTG00005020687) #28	ENSPCTG00005020977	ENSPCTG00005020985	ZNF217 (ENSPCTG00005021008) #29	ENSPCTG00005021022 #30	TSHZ2 (ENSPCTG00005021047) #31	ZFP64 (ENSPCTG00005021080) #33
Blue whale	MODERN SPECIES	6	C20orf85 (ENSBMSG00010015677)	PMEPA1 (ENSBMSG00010015696)	ENSBMSG00010015746 #7	PCK1 (ENSBMSG00010015806) #8	CTCFL (ENSBMSG00010015901) #9	RBM38 (ENSBMSG00010016708) #10	RAE1 (ENSBMSG00010016769) #11	SPO11 (ENSBMSG00010016851) #12	BMP7 (ENSBMSG00010017011) #13	TFAP2C (ENSBMSG00010017082) #14	ENSBMSG00010017111 #15	RTF2 (ENSBMSG00010017141) #19	GCNT7 (ENSBMSG00010017169) #18	CASS4 (ENSBMSG00010017207) #20	CSTF1 (ENSBMSG00010017244) #21	AURKA (ENSBMSG00010017273) #22	FAM210B (ENSBMSG00010017312) #23	MC3R (ENSBMSG00010017331)	CBLN4 (ENSBMSG00010017348) #24	DOK5 (ENSBMSG00010017385) #25	ENSBMSG00010017414	ENSBMSG00010017440 #26	CYP24A1 (ENSBMSG00010017495) #27	BCAS1 (ENSBMSG00010017677) #28	ENSBMSG00010017734	ZNF217 (ENSBMSG00010017748) #29	ENSBMSG00010017767 #30	TSHZ2 (ENSBMSG00010017799) #31	ENSBMSG00010017820	PNMA5 (ENSBMSG00010017834)	ZFP64 (ENSBMSG00010017865) #33
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Caprinae	ANCESTRAL SPECIES	21	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134.m #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Rambouillet Sheep	MODERN SPECIES	4	RAB22A (ENSOARG00020013056)	C20orf85 (ENSOARG00020013218)	PMEPA1 (ENSOARG00020013298)	ENSOARG00020013373 #7	PCK1 (ENSOARG00020013457) #8	CTCFL (ENSOARG00020013572) #9	RBM38 (ENSOARG00020014327) #10	RAE1 (ENSOARG00020014456) #11	SPO11 (ENSOARG00020014512) #12	BMP7 (ENSOARG00020014945) #13	TFAP2C (ENSOARG00020015147) #14	ENSOARG00020015232 #15	RTF2 (ENSOARG00020015268) #19	GCNT7 (ENSOARG00020015320) #18	CSTF1 (ENSOARG00020015504) #21	AURKA (ENSOARG00020015608) #22	FAM210B (ENSOARG00020015852) #23	MC3R (ENSOARG00020015898)	SIRPB2 (ENSOARG00020015924)	NSFL1C (ENSOARG00020015987)	ENSOARG00020016172	SDCBP2 (ENSOARG00020016367)	RAD21L1 (ENSOARG00020016432)	C20orf202 (ENSOARG00020016836)	TMEM74B (ENSOARG00020016880)	PSMF1 (ENSOARG00020016930)	RSPO4 (ENSOARG00020017015)	ANGPT4 (ENSOARG00020017162)	ENSOARG00020017224	FAM110A (ENSOARG00020017237)	SLC52A3 (ENSOARG00020017257)
Goat	MODERN SPECIES	4	C20orf85 (ENSCHIG00000013954)	PMEPA1 (ENSCHIG00000019681)	ENSCHIG00000006747 #7	PCK1 (ENSCHIG00000004184) #8	CTCFL (ENSCHIG00000012079) #9	RBM38 (ENSCHIG00000002609) #10	RAE1 (ENSCHIG00000021396) #11	SPO11 (ENSCHIG00000024033) #12	BMP7 (ENSCHIG00000009982) #13	TFAP2C (ENSCHIG00000016251) #14	ENSCHIG00000011944 #15	RTF2 (ENSCHIG00000016795) #19	GCNT7 (ENSCHIG00000011787) #18	CASS4 (ENSCHIG00000025456) #20	CSTF1 (ENSCHIG00000024686) #21	AURKA (ENSCHIG00000024453) #22	ENSCHIG00000020130 #23	ENSCHIG00000015868	SIRPB2 (ENSCHIG00000020185)	NSFL1C (ENSCHIG00000026320)	ENSCHIG00000008981	SDCBP2 (ENSCHIG00000026727)	SNPH (ENSCHIG00000022086)	RAD21L1 (ENSCHIG00000022078)	C20orf202 (ENSCHIG00000022210)	TMEM74B (ENSCHIG00000000818)	PSMF1 (ENSCHIG00000020929)	RSPO4 (ENSCHIG00000015538)	ANGPT4 (ENSCHIG00000018246)	FAM110A (ENSCHIG00000001856)	SLC52A3 (ENSCHIG00000020719)
Bovinae	ANCESTRAL SPECIES	23	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000015224.c.b.a	ENSGT00390000005057.g #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a.c	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Bos	ANCESTRAL SPECIES	24	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000015224.c.b.a	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a.c	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Bos_a	ANCESTRAL SPECIES	7	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b.d #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000015224.c.b.a	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.b.a.c	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Domestic yak	MODERN SPECIES	3	ZBP1 (ENSBGRG00000009247) #7	PCK1 (ENSBGRG00000009353) #8	CTCFL (ENSBGRG00000009589) #9	RBM38 (ENSBGRG00000010003) #10	ENSBGRG00000010143 #11	SPO11 (ENSBGRG00000010307) #12	BMP7 (ENSBGRG00000010612) #13	TFAP2C (ENSBGRG00000010689) #14	ENSBGRG00000010827	ENSBGRG00000010860 #15	RTF2 (ENSBGRG00000010891) #19	GCNT7 (ENSBGRG00000011133) #18	CASS4 (ENSBGRG00000011222) #20	CSTF1 (ENSBGRG00000011331) #21	ENSBGRG00000011378	AURKA (ENSBGRG00000011397) #22	FAM210B (ENSBGRG00000011532) #23	MC3R (ENSBGRG00000011613)	SIRPB2 (ENSBGRG00000011673)	NSFL1C (ENSBGRG00000011719)	ENSBGRG00000012031	SDCBP2 (ENSBGRG00000012247)	SNPH (ENSBGRG00000012380)	C20orf202 (ENSBGRG00000012779)	TMEM74B (ENSBGRG00000012833)	PSMF1 (ENSBGRG00000012880)	RSPO4 (ENSBGRG00000013102)	ANGPT4 (ENSBGRG00000013294)	FAM110A (ENSBGRG00000013445)	SLC52A3 (ENSBGRG00000013477)	SCRT2 (ENSBGRG00000013559)
Wild yak	MODERN SPECIES	119	C20orf85 (ENSBMUG00000016991)	PMEPA1 (ENSBMUG00000016982)	ZBP1 (ENSBMUG00000016977) #7	PCK1 (ENSBMUG00000016967) #8	CTCFL (ENSBMUG00000016873) #9	RBM38 (ENSBMUG00000016782) #10	ENSBMUG00000016759 #11	SPO11 (ENSBMUG00000016729) #12	BMP7 (ENSBMUG00000016640) #13	TFAP2C (ENSBMUG00000016627) #14	ENSBMUG00000016603 #15	GCNT7 (ENSBMUG00000016592) #18	RTF2 (ENSBMUG00000016577) #19	CASS4 (ENSBMUG00000016558) #20	CSTF1 (ENSBMUG00000016523) #21	AURKA (ENSBMUG00000016455) #22	FAM210B (ENSBMUG00000016427) #23	MC3R (ENSBMUG00000016410)	ENSBMUG00000016366	SIRPB2 (ENSBMUG00000016351)	NSFL1C (ENSBMUG00000016322)	ENSBMUG00000016263	SDCBP2 (ENSBMUG00000016215)
Bos_b	ANCESTRAL SPECIES	26	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000015224.c.b.a	ENSGT00390000005057.g #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b.e	ENSGT00960000186656.a.a.b	ENSGT00960000186656.a.b	ENSGT00520000055567.a.a.a	ENSGT00940000153311.a.b.a.i.a	ENSGT00940000161179	ENSGT00520000055634.b	ENSGT00940000161638	ENSGT00490000044517	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00940000160937	ENSGT00940000160129	ENSGT00950000183056.B.a
Cow	MODERN SPECIES	4	PMEPA1 (ENSBTAG00000054628)	ZBP1 (ENSBTAG00000012406) #7	PCK1 (ENSBTAG00000001936) #8	CTCFL (ENSBTAG00000013079) #9	RBM38 (ENSBTAG00000008105) #10	RAE1 (ENSBTAG00000010934) #11	SPO11 (ENSBTAG00000044210) #12	BMP7 (ENSBTAG00000015362) #13	TFAP2C (ENSBTAG00000002065) #14	ENSBTAG00000024608	FAM209A (ENSBTAG00000031462) #15	RTF2 (ENSBTAG00000027390) #19	GCNT7 (ENSBTAG00000006243) #18	CASS4 (ENSBTAG00000014555) #20	CSTF1 (ENSBTAG00000006639) #21	AURKA (ENSBTAG00000013009) #22	FAM210B (ENSBTAG00000013007) #23	MC3R (ENSBTAG00000004712)	SIRPD (ENSBTAG00000033397)	SIRPB2 (ENSBTAG00000006539)	NSFL1C (ENSBTAG00000006533)	FKBP1A (ENSBTAG00000008303)	ENSBTAG00000052136	SDCBP2 (ENSBTAG00000021321)	SNPH (ENSBTAG00000048366)	RAD21L1 (ENSBTAG00000001376)	C13H20orf202 (ENSBTAG00000050105)	TMEM74B (ENSBTAG00000018418)	PSMF1 (ENSBTAG00000018417)	RSPO4 (ENSBTAG00000021885)	ANGPT4 (ENSBTAG00000021811)
Hybrid Bos Indicus	MODERN SPECIES	4	PMEPA1 (ENSBIXG00005022840)	ZBP1 (ENSBIXG00005007383) #7	ENSBIXG00005022901	CTCFL (ENSBIXG00005022968) #9	PCK1 (ENSBIXG00005003950) #8	RAE1 (ENSBIXG00005023229) #11	SPO11 (ENSBIXG00005023438) #12	BMP7 (ENSBIXG00005023542) #13	TFAP2C (ENSBIXG00005023582) #14	ENSBIXG00005023622	ENSBIXG00005023633 #15	GCNT7 (ENSBIXG00005004050) #18	RTF2 (ENSBIXG00005023694) #19	CASS4 (ENSBIXG00005023749) #20	CSTF1 (ENSBIXG00005005882) #21	AURKA (ENSBIXG00005023837) #22	FAM210B (ENSBIXG00005023861) #23	MC3R (ENSBIXG00005023881)	SIRPB2 (ENSBIXG00005023892)	NSFL1C (ENSBIXG00005023940)	ENSBIXG00005023953	SDCBP2 (ENSBIXG00005004119)	ENSBIXG00005024112	RAD21L1 (ENSBIXG00005024217)	C20orf202 (ENSBIXG00005004145)	TMEM74B (ENSBIXG00005024275)	PSMF1 (ENSBIXG00005024324)	RSPO4 (ENSBIXG00005024367)	ANGPT4 (ENSBIXG00005024442)	FAM110A (ENSBIXG00005024488)	SLC52A3 (ENSBIXG00005004191)
American bison	MODERN SPECIES	3089	PMEPA1 (ENSBBBG00000024661)	ENSBBBG00000024674 #7	PCK1 (ENSBBBG00000006468) #8	CTCFL (ENSBBBG00000008049) #9	RBM38 (ENSBBBG00000024899) #10	RAE1 (ENSBBBG00000024949) #11	SPO11 (ENSBBBG00000025046) #12	BMP7 (ENSBBBG00000006644) #13	TFAP2C (ENSBBBG00000007748) #14	ENSBBBG00000025115	ENSBBBG00000025120 #15	GCNT7 (ENSBBBG00000025135) #18	RTF2 (ENSBBBG00000006668) #19	CASS4 (ENSBBBG00000025195) #20	CSTF1 (ENSBBBG00000025215) #21	AURKA (ENSBBBG00000025307) #22	FAM210B (ENSBBBG00000008091) #23	MC3R (ENSBBBG00000025338)	SIRPB2 (ENSBBBG00000007856)	NSFL1C (ENSBBBG00000025367)	ENSBBBG00000025481	SDCBP2 (ENSBBBG00000009625)	SNPH (ENSBBBG00000009630)	RAD21L1 (ENSBBBG00000009638)	C20orf202 (ENSBBBG00000009643)	TMEM74B (ENSBBBG00000009647)	PSMF1 (ENSBBBG00000001566)	RSPO4 (ENSBBBG00000007112)	ANGPT4 (ENSBBBG00000009694)	FAM110A (ENSBBBG00000001586)	SLC52A3 (ENSBBBG00000009701)
Siberian musk deer	MODERN SPECIES	1193	C20orf85 (ENSMMSG00000021117)	PMEPA1 (ENSMMSG00000021093)	ENSMMSG00000021009 #7	PCK1 (ENSMMSG00000020967) #8	CTCFL (ENSMMSG00000020529) #9	RBM38 (ENSMMSG00000020472) #10	RAE1 (ENSMMSG00000020424) #11	SPO11 (ENSMMSG00000020191) #12	BMP7 (ENSMMSG00000020121) #13	TFAP2C (ENSMMSG00000020093) #14	ENSMMSG00000020083 #15	GCNT7 (ENSMMSG00000020064) #18	RTF2 (ENSMMSG00000020042) #19	CASS4 (ENSMMSG00000019993) #20	CSTF1 (ENSMMSG00000019970) #21	AURKA (ENSMMSG00000019919) #22	FAM210B (ENSMMSG00000019888) #23	ENSMMSG00000019880	ENSMMSG00000019862	SIRPB2 (ENSMMSG00000019841)	NSFL1C (ENSMMSG00000019782)	ENSMMSG00000019745	SDCBP2 (ENSMMSG00000019715)	RAD21L1 (ENSMMSG00000019560)	C20orf202 (ENSMMSG00000019524)	TMEM74B (ENSMMSG00000019512)	PSMF1 (ENSMMSG00000019483)	RSPO4 (ENSMMSG00000019455)	ANGPT4 (ENSMMSG00000019383)	FAM110A (ENSMMSG00000019364)	SLC52A3 (ENSMMSG00000019335)
Yarkand deer	MODERN SPECIES	15	PMEPA1 (ENSCHYG00000018099)	ENSCHYG00000018137 #7	PCK1 (ENSCHYG00000018190) #8	CTCFL (ENSCHYG00000018291) #9	RBM38 (ENSCHYG00000018538) #10	ENSCHYG00000018647 #11	SPO11 (ENSCHYG00000018785) #12	BMP7 (ENSCHYG00000019388) #13	ENSCHYG00000019890	TFAP2C (ENSCHYG00000019937) #14	ENSCHYG00000020096 #15	RTF2 (ENSCHYG00000020116) #19	GCNT7 (ENSCHYG00000020206) #18	CASS4 (ENSCHYG00000020270) #20	CSTF1 (ENSCHYG00000020443) #21	AURKA (ENSCHYG00000020501) #22	ENSCHYG00000020595 #23	MC3R (ENSCHYG00000020674)	ENSCHYG00000020710	SIRPB2 (ENSCHYG00000020774)	ENSCHYG00000020847	ENSCHYG00000021051	SDCBP2 (ENSCHYG00000021231)	SNPH (ENSCHYG00000021365)	C20orf202 (ENSCHYG00000021610)	TMEM74B (ENSCHYG00000021658)	PSMF1 (ENSCHYG00000021704)	RSPO4 (ENSCHYG00000021771)	ANGPT4 (ENSCHYG00000021825)	FAM110A (ENSCHYG00000021925)	SLC52A3 (ENSCHYG00000021958)
Camelidae	ANCESTRAL SPECIES	10	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Alpaca	MODERN SPECIES	178												GCNT7 (ENSVPAG00000012140) #18	RTF2 (ENSVPAG00000012138) #19	CASS4 (ENSVPAG00000012136) #20	CSTF1 (ENSVPAG00000012134) #21	ENSVPAG00000012131 #22	MC3R (ENSVPAG00000012130)
Arabian camel	MODERN SPECIES	10	PMEPA1 (ENSCDRG00005018556)	ZBP1 (ENSCDRG00005018520) #7	PCK1 (ENSCDRG00005018483) #8	CTCFL (ENSCDRG00005018103) #9	RBM38 (ENSCDRG00005018053) #10	RAE1 (ENSCDRG00005018020) #11	SPO11 (ENSCDRG00005017688) #12	BMP7 (ENSCDRG00005017580) #13	ENSCDRG00005017550	TFAP2C (ENSCDRG00005017528) #14	ENSCDRG00005017508 #15	GCNT7 (ENSCDRG00005017452) #18	RTF2 (ENSCDRG00005017316) #19	CASS4 (ENSCDRG00005017279) #20	CSTF1 (ENSCDRG00005017255) #21	AURKA (ENSCDRG00005017220) #22	FAM210B (ENSCDRG00005017188) #23	MC3R (ENSCDRG00005017174)	CBLN4 (ENSCDRG00005017147) #24	DOK5 (ENSCDRG00005017101) #25	PFDN4 (ENSCDRG00005017062) #26	CYP24A1 (ENSCDRG00005016933) #27	BCAS1 (ENSCDRG00005016699) #28	ZNF217 (ENSCDRG00005016648) #29	ENSCDRG00005016633 #30	TSHZ2 (ENSCDRG00005016617) #31	ENSCDRG00005016576	ZFP64 (ENSCDRG00005016359) #33	SALL4 (ENSCDRG00005016240) #34	ATP9A (ENSCDRG00005015920) #35	NFATC2 (ENSCDRG00005015695) #37
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Carnivora	ANCESTRAL SPECIES	20	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.cb #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000154276.kb	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.cb #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000154276.kb	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.cb #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000154276.kb	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00910000146955 #36	ENSGT00940000156230 #37
leopard	MODERN SPECIES	32										TFAP2C (ENSPPRG00000006375) #14	ENSPPRG00000006287 #15	RTF2 (ENSPPRG00000005166) #19	GCNT7 (ENSPPRG00000001763) #18	CASS4 (ENSPPRG00000001534) #20	CSTF1 (ENSPPRG00000000733) #21	AURKA (ENSPPRG00000000440) #22	FAM210B (ENSPPRG00000023782) #23	MC3R (ENSPPRG00000017600)	CBLN4 (ENSPPRG00000023868) #24	DOK5 (ENSPPRG00000024034) #25	ENSPPRG00000024512 #26	CYP24A1 (ENSPPRG00000024597) #27	BCAS1 (ENSPPRG00000015142) #28	ZNF217 (ENSPPRG00000014025) #29	TSHZ2 (ENSPPRG00000013365) #31	ZFP64 (ENSPPRG00000012539) #33	ENSPPRG00000010090 #33	ENSPPRG00000009749	SALL4 (ENSPPRG00000008677) #34	ATP9A (ENSPPRG00000008193) #35	ENSPPRG00000017056 #36
lion	MODERN SPECIES	3	C20orf85 (ENSPLOG00000011071)	PMEPA1 (ENSPLOG00000010999)	ENSPLOG00000010977 #7	PCK1 (ENSPLOG00000010911) #8	CTCFL (ENSPLOG00000010795) #9	RBM38 (ENSPLOG00000003968) #10	RAE1 (ENSPLOG00000003947) #11	SPO11 (ENSPLOG00000003903) #12	BMP7 (ENSPLOG00000003845) #13	TFAP2C (ENSPLOG00000003814) #14	ENSPLOG00000003801 #15	GCNT7 (ENSPLOG00000003785) #18	RTF2 (ENSPLOG00000003723) #19	CASS4 (ENSPLOG00000003663) #20	CSTF1 (ENSPLOG00000003647) #21	AURKA (ENSPLOG00000003634) #22	FAM210B (ENSPLOG00000003624) #23	MC3R (ENSPLOG00000003615)	CBLN4 (ENSPLOG00000003605) #24	DOK5 (ENSPLOG00000003578) #25	ENSPLOG00000003567 #26	BCAS1 (ENSPLOG00000003532) #28	ZNF217 (ENSPLOG00000003494) #29	TSHZ2 (ENSPLOG00000003471) #31	ZFP64 (ENSPLOG00000003449) #33	ENSPLOG00000003430 #33	ENSPLOG00000003422	SALL4 (ENSPLOG00000003409) #34	ATP9A (ENSPLOG00000003344) #35	NFATC2 (ENSPLOG00000003200) #37	KCNG1 (ENSPLOG00000003153)
Tiger	MODERN SPECIES	253	ENSPTIG00000009510	C20orf85 (ENSPTIG00000011178)	ENSPTIG00000011495 #7	PCK1 (ENSPTIG00000012521) #8	ENSPTIG00000013064 #9	ENSPTIG00000013448 #10	RAE1 (ENSPTIG00000014648) #11	SPO11 (ENSPTIG00000017033) #12	BMP7 (ENSPTIG00000020525) #13	TFAP2C (ENSPTIG00000021497) #14	ENSPTIG00000021739 #15	RTF2 (ENSPTIG00000003720) #19	GCNT7 (ENSPTIG00000007809) #18	CASS4 (ENSPTIG00000009122) #20	CSTF1 (ENSPTIG00000012174) #21	AURKA (ENSPTIG00000012737) #22	FAM210B (ENSPTIG00000015174) #23	MC3R (ENSPTIG00000001341)	CBLN4 (ENSPTIG00000017065) #24	DOK5 (ENSPTIG00000017461) #25	ENSPTIG00000018209 #26	CYP24A1 (ENSPTIG00000018918) #27	BCAS1 (ENSPTIG00000020298) #28	ZNF217 (ENSPTIG00000005463) #29	TSHZ2 (ENSPTIG00000007834) #31	ZFP64 (ENSPTIG00000008689) #33	ENSPTIG00000009370 #34	ATP9A (ENSPTIG00000010238) #35	ENSPTIG00000001966 #36	ENSPTIG00000020900 #37
Cat	MODERN SPECIES	2	ENSFCAG00000019082	ANKRD60 (ENSFCAG00000041149)	CA3H20orf85 (ENSFCAG00000026868)	PMEPA1 (ENSFCAG00000025692)	ZBP1 (ENSFCAG00000000420) #7	PCK1 (ENSFCAG00000000419) #8	CTCFL (ENSFCAG00000031045) #9	RBM38 (ENSFCAG00000042916) #10	SPO11 (ENSFCAG00000041965) #12	ENSFCAG00000053180 #13	TFAP2C (ENSFCAG00000005551) #14	RTF2 (ENSFCAG00000037890) #19	GCNT7 (ENSFCAG00000005550) #18	CASS4 (ENSFCAG00000005548) #20	CSTF1 (ENSFCAG00000025673) #21	AURKA (ENSFCAG00000024493) #22	FAM210B (ENSFCAG00000044679) #23	MC3R (ENSFCAG00000007053)	CBLN4 (ENSFCAG00000042415) #24	DOK5 (ENSFCAG00000007809) #25	PFDN4 (ENSFCAG00000013355) #26	CYP24A1 (ENSFCAG00000002452) #27	BCAS1 (ENSFCAG00000002451) #28	ZNF217 (ENSFCAG00000029845) #29	TSHZ2 (ENSFCAG00000014616) #31	ZFP64 (ENSFCAG00000011815) #33	SALL4 (ENSFCAG00000002822) #34	ENSFCAG00000032676	ATP9A (ENSFCAG00000022069) #35	NFATC2 (ENSFCAG00000000947) #37	KCNG1 (ENSFCAG00000009793)
Caniformia	DUPLICATION
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154900.bb #22
Canidae	ANCESTRAL SPECIES																	ENSGT00940000154900.bb #22
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000158696	ENSGT00390000000280	ENSGT00390000008481	ENSGT00440000035378.d	ENSGT00940000157628	ENSGT00940000158654.u	ENSGT00390000002789	ENSGT00400000024448	ENSGT00940000161511	ENSGT00940000162004	ENSGT00910000144347.u.b	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000163435.e.b	ENSGT00940000153467.a.a	ENSGT00940000154900.bb #22	ENSGT00390000018145.lc.b	ENSGT00390000012976.d.s.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00390000010734.j.b.j.a.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A	ENSGT00940000158473	ENSGT00940000161388
Dog	DUPLICATION
Dog	MODERN SPECIES		AIG1 (ENSCAFG00845011826)	ENSCAFG00845011947	ADAT2 (ENSCAFG00845011977)	PEX3 (ENSCAFG00845012053)	FUCA2 (ENSCAFG00845012120)	PHACTR2 (ENSCAFG00845012219)	ZC2HC1B (ENSCAFG00845012485)	ENSCAFG00845012627	ZC2HC1B (ENSCAFG00845012671)	PLAGL1 (ENSCAFG00845012757)	ENSCAFG00845012810	SF3B5 (ENSCAFG00845012827)	STX11 (ENSCAFG00845012845)	UTRN (ENSCAFG00845012944)	ENSCAFG00845013137	ENSCAFG00845013176 #22	ENSCAFG00845013198	ENSCAFG00845013216	ENSCAFG00845013257	FBXO30 (ENSCAFG00845013317)	ENSCAFG00845013342	SHPRH (ENSCAFG00845013379)	GRM1 (ENSCAFG00845013661)	RAB32 (ENSCAFG00845013710)	ADGB (ENSCAFG00845013765)	STXBP5 (ENSCAFG00845014465)	SAMD5 (ENSCAFG00845017100)	SASH1 (ENSCAFG00845017257)	APOO (ENSCAFG00845017848)	UST (ENSCAFG00845017900)	TAB2 (ENSCAFG00845018045)
Dog	MODERN SPECIES	8	ENSCAFG00845023874	TRIM33 (ENSCAFG00845024048)	BCAS2 (ENSCAFG00845024283)	DENND2C (ENSCAFG00845024386)	AMPD1 (ENSCAFG00845025118)	NRAS (ENSCAFG00845026380)	CSDE1 (ENSCAFG00845026694)	SIKE1 (ENSCAFG00845027120)	ENSCAFG00845027157	ENSCAFG00845027184	ENSCAFG00845027218	ENSCAFG00845027397	ENSCAFG00845027680	TSHB (ENSCAFG00845027709)	TSPAN2 (ENSCAFG00845027766)	ENSCAFG00845027829 #22	NGF (ENSCAFG00845027859)	VANGL1 (ENSCAFG00845027910)	CASQ2 (ENSCAFG00845028062)	ENSCAFG00845028114	SLC22A15 (ENSCAFG00845028198)	MAB21L3 (ENSCAFG00845028265)	ENSCAFG00845028320	ATP1A1 (ENSCAFG00845028456)	ENSCAFG00845028795	IGSF3 (ENSCAFG00845028936)	CD2 (ENSCAFG00845028984)	PTGFRN (ENSCAFG00845029002)	CD101 (ENSCAFG00845029071)	ENSCAFG00845029143	TRIM45 (ENSCAFG00845029248)
Dingo	MODERN SPECIES	125	ENSCAFG00020000167	PEX3 (ENSCAFG00020000229)	FUCA2 (ENSCAFG00020000782)	PHACTR2 (ENSCAFG00020000796)	ENSCAFG00020000817	LTV1 (ENSCAFG00020000832)	ENSCAFG00020000837	ZC2HC1B (ENSCAFG00020000843)	PLAGL1 (ENSCAFG00020000859)	ENSCAFG00020000861	SF3B5 (ENSCAFG00020000873)	ENSCAFG00020000880	STX11 (ENSCAFG00020000889)	ENSCAFG00020000890	UTRN (ENSCAFG00020001787)	ENSCAFG00020010360 #22	ENSCAFG00020010362	ENSCAFG00020010366	EPM2A (ENSCAFG00020010383)	FBXO30 (ENSCAFG00020010406)	ENSCAFG00020010408	SHPRH (ENSCAFG00020010410)	GRM1 (ENSCAFG00020010485)	ENSCAFG00020010487	RAB32 (ENSCAFG00020010490)	ENSCAFG00020010513	ENSCAFG00020010515	STXBP5 (ENSCAFG00020010616)	ENSCAFG00020013426	SAMD5 (ENSCAFG00020013438)	SASH1 (ENSCAFG00020013464)
Caniformia	ANCESTRAL SPECIES		ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Ursidae	ANCESTRAL SPECIES	14	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230.b #37	ENSGT00940000156230.a #37
Ursus	ANCESTRAL SPECIES	152	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24
American black bear	MODERN SPECIES	5877														CASS4 (ENSUAMG00000018582) #20	CSTF1 (ENSUAMG00000018579) #21	AURKA (ENSUAMG00000018573) #22
Polar bear	MODERN SPECIES	219	ENSUMAG00000002566	C20orf85 (ENSUMAG00000002586)	ZBP1 (ENSUMAG00000002600) #7	PCK1 (ENSUMAG00000002607) #8	ENSUMAG00000002621 #9	ENSUMAG00000002640 #10	RAE1 (ENSUMAG00000002648) #11	SPO11 (ENSUMAG00000002655) #12	ENSUMAG00000002676 #13	TFAP2C (ENSUMAG00000002685) #14	ENSUMAG00000002703 #15	RTF2 (ENSUMAG00000002707) #19	GCNT7 (ENSUMAG00000002711) #18	CASS4 (ENSUMAG00000002722) #20	CSTF1 (ENSUMAG00000002726) #21	AURKA (ENSUMAG00000002729) #22	FAM210B (ENSUMAG00000002731) #23	MC3R (ENSUMAG00000002734)	CBLN4 (ENSUMAG00000002743) #24
Giant Panda	MODERN SPECIES	4	ENSAMEG00000012659	C20orf85 (ENSAMEG00000024288)	PMEPA1 (ENSAMEG00000012698)	ENSAMEG00000029261 #7	PCK1 (ENSAMEG00000012718) #8	CTCFL (ENSAMEG00000012766) #9	RBM38 (ENSAMEG00000028405) #10	RAE1 (ENSAMEG00000012789) #11	SPO11 (ENSAMEG00000012813) #12	BMP7 (ENSAMEG00000012817) #13	TFAP2C (ENSAMEG00000007037) #14	ENSAMEG00000007066 #15	RTF2 (ENSAMEG00000007072) #19	GCNT7 (ENSAMEG00000007103) #18	CASS4 (ENSAMEG00000007113) #20	AURKA (ENSAMEG00000007168) #22	FAM210B (ENSAMEG00000029051) #23	MC3R (ENSAMEG00000019471)	CBLN4 (ENSAMEG00000027847) #24	ENSAMEG00000019489	DOK5 (ENSAMEG00000013163) #25	PFDN4 (ENSAMEG00000013164) #26	CYP24A1 (ENSAMEG00000013169) #27	BCAS1 (ENSAMEG00000013223) #28	ZNF217 (ENSAMEG00000013231) #29	ENSAMEG00000019927 #30	TSHZ2 (ENSAMEG00000013234) #31	ZFP64 (ENSAMEG00000013237) #33	SALL4 (ENSAMEG00000013250) #34	ATP9A (ENSAMEG00000013268) #35	NFATC2 (ENSAMEG00000013329) #37
Mustelinae	ANCESTRAL SPECIES	58	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31
Ferret	MODERN SPECIES	236	PCK1 (ENSMPUG00000006661) #8	ENSMPUG00000006657	CTCFL (ENSMPUG00000006570) #9	RBM38 (ENSMPUG00000006518) #10	RAE1 (ENSMPUG00000006504) #11	ENSMPUG00000006499	SPO11 (ENSMPUG00000006486) #12	BMP7 (ENSMPUG00000006477) #13	ENSMPUG00000006472	TFAP2C (ENSMPUG00000006387) #14	ENSMPUG00000006379 #15	GCNT7 (ENSMPUG00000006358) #18	RTF2 (ENSMPUG00000006344) #19	CASS4 (ENSMPUG00000006337) #20	CSTF1 (ENSMPUG00000006243) #21	AURKA (ENSMPUG00000006233) #22	FAM210B (ENSMPUG00000006225) #23	ENSMPUG00000020173	MC3R (ENSMPUG00000020172)	CBLN4 (ENSMPUG00000006215) #24	DOK5 (ENSMPUG00000006202) #25	PFDN4 (ENSMPUG00000006173) #26	CYP24A1 (ENSMPUG00000006168) #27	BCAS1 (ENSMPUG00000006155) #28	ZNF217 (ENSMPUG00000006142) #29	TSHZ2 (ENSMPUG00000020171) #31
American mink	MODERN SPECIES	82	PMEPA1 (ENSNVIG00000022209)	ENSNVIG00000022232 #7	PCK1 (ENSNVIG00000022258) #8	CTCFL (ENSNVIG00000022269) #9	RBM38 (ENSNVIG00000022316) #10	RAE1 (ENSNVIG00000022326) #11	SPO11 (ENSNVIG00000022339) #12	ENSNVIG00000022363 #13	E9PH02 (ENSNVIG00000022373) #13	TFAP2C (ENSNVIG00000022382) #14	ENSNVIG00000022396 #15	RTF2 (ENSNVIG00000022403) #19	GCNT7 (ENSNVIG00000022451) #18	CASS4 (ENSNVIG00000022461) #20	CSTF1 (ENSNVIG00000022484) #21	AURKA (ENSNVIG00000022500) #22	FAM210B (ENSNVIG00000022528) #23	MC3R (ENSNVIG00000022532)	CBLN4 (ENSNVIG00000022537) #24	ENSNVIG00000022545	DOK5 (ENSNVIG00000022551) #25	PFD4 (ENSNVIG00000022561) #26	CYP24A1 (ENSNVIG00000022568) #27	BCAS1 (ENSNVIG00000022589) #28	ZNF217 (ENSNVIG00000022614) #29	B1H0U8 (ENSNVIG00000022617) #30	TSHZ2 (ENSNVIG00000022622) #31
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	41	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb.a #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900.cb.a #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696.ab #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Dingo	DUPLICATION
Dingo	MODERN SPECIES	328	USP25 (ENSCAFG00020026422)	ENSCAFG00020026525	ENSCAFG00020026527	SAMSN1 (ENSCAFG00020026530)	HSPA13 (ENSCAFG00020026532)	ENSCAFG00020026534	ENSCAFG00020026540	RBM11 (ENSCAFG00020026541)	LIPI (ENSCAFG00020026542)	ENSCAFG00020026545	ENSCAFG00020026548	ENSCAFG00020026549	ROBO2 (ENSCAFG00020026553)	ENSCAFG00020026658	ENSCAFG00020026669	ENSCAFG00020026688 #22	ENSCAFG00020026690	GBE1 (ENSCAFG00020026699)	ENSCAFG00020026703	ENSCAFG00020026705	ENSCAFG00020026706	CADM2 (ENSCAFG00020026710)	ENSCAFG00020026716	VGLL3 (ENSCAFG00020026720)	ENSCAFG00020026721	CHMP2B (ENSCAFG00020026723)	POU1F1 (ENSCAFG00020026725)	HTR1F (ENSCAFG00020026730)	ENSCAFG00020026732	CGGBP1 (ENSCAFG00020026735)	ZNF654 (ENSCAFG00020026738)
Dingo	MODERN SPECIES	343	C20orf85 (ENSCAFG00020022012)	PMEPA1 (ENSCAFG00020022009)	ENSCAFG00020022005 #7	PCK1 (ENSCAFG00020021997) #8	CTCFL (ENSCAFG00020021957) #9	RBM38 (ENSCAFG00020021943) #10	RAE1 (ENSCAFG00020021942) #11	SPO11 (ENSCAFG00020021940) #12	ENSCAFG00020021939 #13	TFAP2C (ENSCAFG00020021932) #14	ENSCAFG00020021929 #15	GCNT7 (ENSCAFG00020021927) #18	RTF2 (ENSCAFG00020021926) #19	CASS4 (ENSCAFG00020021924) #20	CSTF1 (ENSCAFG00020021923) #21	ENSCAFG00020021922 #22	FAM210B (ENSCAFG00020021921) #23	MC3R (ENSCAFG00020021920)	CBLN4 (ENSCAFG00020021919) #24	DOK5 (ENSCAFG00020021917) #25	ENSCAFG00020021915 #26	CYP24A1 (ENSCAFG00020021905) #27	BCAS1 (ENSCAFG00020021900) #28	ZNF217 (ENSCAFG00020021894) #29	ENSCAFG00020021892 #30	TSHZ2 (ENSCAFG00020021890) #31	ENSCAFG00020021880	ZFP64 (ENSCAFG00020021877) #33	SALL4 (ENSCAFG00020021870) #34	ATP9A (ENSCAFG00020017722) #35	NFATC2 (ENSCAFG00020017548) #37
Dog	MODERN SPECIES	16	C24H20orf85 (ENSCAFG00845013121)	PMEPA1 (ENSCAFG00845013029)	ENSCAFG00845012986 #7	PCK1 (ENSCAFG00845029983) #8	CTCFL (ENSCAFG00845029950) #9	RBM38 (ENSCAFG00845029906) #10	RAE1 (ENSCAFG00845029836) #12	ENSCAFG00845029786	BMP7 (ENSCAFG00845029691) #13	TFAP2C (ENSCAFG00845029577) #14	ENSCAFG00845029529 #15	GCNT7 (ENSCAFG00845029505) #18	RTF2 (ENSCAFG00845029371) #19	CASS4 (ENSCAFG00845029281) #20	CSTF1 (ENSCAFG00845029253) #21	ENSCAFG00845029207 #22	FAM210B (ENSCAFG00845029164) #23	MC3R (ENSCAFG00845029148)	CBLN4 (ENSCAFG00845029097) #24	DOK5 (ENSCAFG00845029068) #25	ENSCAFG00845029028 #26	CYP24A1 (ENSCAFG00845028958) #27	BCAS1 (ENSCAFG00845028476) #28	ZNF217 (ENSCAFG00845028152) #29	ENSCAFG00845028117 #30	TSHZ2 (ENSCAFG00845027975) #31	ZFP64 (ENSCAFG00845027811) #33	SALL4 (ENSCAFG00845027669) #34	ATP9A (ENSCAFG00845027235) #35	NFATC2 (ENSCAFG00845026966) #37	KCNG1 (ENSCAFG00845026863)
Canidae	ANCESTRAL SPECIES																	ENSGT00940000154900.cb.b #22
Canis_lupus	ANCESTRAL SPECIES	21	ENSGT00940000162506	ENSGT00950000183200.A.a.a	ENSGT00940000160158	ENSGT00390000012084	ENSGT00940000162152.y	ENSGT00940000162152.z	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000162213.a.a.c.a.a	ENSGT00940000159074	ENSGT00530000063695.a	ENSGT00940000153669.a	ENSGT00950000183201.a	ENSGT00390000004986	ENSGT00940000161513	ENSGT00940000154900.cb.b #22	ENSGT01100000265450	ENSGT00940000161257.f	ENSGT00940000158183	ENSGT00390000003477.n	ENSGT00940000155492.b	ENSGT00940000159713
Dingo	MODERN SPECIES	245	AMOTL1 (ENSCAFG00020016518)	CWC15 (ENSCAFG00020016515)	ENSCAFG00020016513	ENSCAFG00020016510	ENSCAFG00020016506	ENSCAFG00020016504	ENSCAFG00020016496	ENSCAFG00020016489	FAM76B (ENSCAFG00020016484)	CEP57 (ENSCAFG00020016478)	MTMR2 (ENSCAFG00020016062)	MAML2 (ENSCAFG00020016057)	ENSCAFG00020016054	CCDC82 (ENSCAFG00020016052)	JRKL (ENSCAFG00020016050)	ENSCAFG00020016048 #22
Dog	MODERN SPECIES	13	FUT4 (ENSCAFG00845020086)	PIWIL4 (ENSCAFG00845019963)	AMOTL1 (ENSCAFG00845019406)	CWC15 (ENSCAFG00845019309)	ENSCAFG00845019286	ENSCAFG00845019240	ENDOD1 (ENSCAFG00845019180)	SESN3 (ENSCAFG00845018942)	ENSCAFG00845018846	FAM76B (ENSCAFG00845018160)	CEP57 (ENSCAFG00845017787)	MTMR2 (ENSCAFG00845017531)	MAML2 (ENSCAFG00845017403)	CCDC82 (ENSCAFG00845017278)	JRKL (ENSCAFG00845017252)	ENSCAFG00845017193 #22	ENSCAFG00845017020	ENSCAFG00845016836	ENSCAFG00845016498	ENSCAFG00845016310	ENSCAFG00845015949	PGR (ENSCAFG00845015739)
Red fox	MODERN SPECIES	108	ENSVVUG00000017166	PMEPA1 (ENSVVUG00000017183)	ENSVVUG00000017189 #7	PCK1 (ENSVVUG00000017220) #8	CTCFL (ENSVVUG00000017226) #9	RBM38 (ENSVVUG00000017246) #10	RAE1 (ENSVVUG00000017251) #11	SPO11 (ENSVVUG00000017270) #12	BMP7 (ENSVVUG00000017291) #13	TFAP2C (ENSVVUG00000017309) #14	FAM209B (ENSVVUG00000017324) #15	GCNT7 (ENSVVUG00000017328) #18	RTF2 (ENSVVUG00000017332) #19	CASS4 (ENSVVUG00000017340) #20	CSTF1 (ENSVVUG00000017348) #21	AURKA (ENSVVUG00000017355) #22	FAM210B (ENSVVUG00000017391) #23	MC3R (ENSVVUG00000017404)	CBLN4 (ENSVVUG00000017416) #24
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Greater horseshoe bat	MODERN SPECIES	15	C20orf85 (ENSRFEG00010021221)	PMEPA1 (ENSRFEG00010021235)	ENSRFEG00010021252 #7	PCK1 (ENSRFEG00010021269) #8	CTCFL (ENSRFEG00010021324) #9	RBM38 (ENSRFEG00010021393) #10	RAE1 (ENSRFEG00010021402) #11	SPO11 (ENSRFEG00010021432) #12	BMP7 (ENSRFEG00010021458) #13	TFAP2C (ENSRFEG00010021478) #14	ENSRFEG00010021483 #15	RTF2 (ENSRFEG00010021502) #19	GCNT7 (ENSRFEG00010021518) #18	CASS4 (ENSRFEG00010021526) #20	CSTF1 (ENSRFEG00010021540) #21	AURKA (ENSRFEG00010021556) #22	FAM210B (ENSRFEG00010021572) #23	MC3R (ENSRFEG00010021575)	CBLN4 (ENSRFEG00010011203) #24	DOK5 (ENSRFEG00010011259) #25	ENSRFEG00010011339	PFDN4 (ENSRFEG00010011415) #26	CYP24A1 (ENSRFEG00010011474) #27	BCAS1 (ENSRFEG00010011942) #28	ZNF217 (ENSRFEG00010012136) #29	ENSRFEG00010012201 #30	TSHZ2 (ENSRFEG00010012218) #31	ZFP64 (ENSRFEG00010012242) #33	SALL4 (ENSRFEG00010012441) #34	ATP9A (ENSRFEG00010012611) #35	ENSRFEG00010012770
Microbat	MODERN SPECIES	1092	PMEPA1 (ENSMLUG00000011071)	ENSMLUG00000017020 #7	PCK1 (ENSMLUG00000011043) #8	ENSMLUG00000011016 #9	RBM38 (ENSMLUG00000011140) #10	RAE1 (ENSMLUG00000011112) #11	SPO11 (ENSMLUG00000011081) #12	BMP7 (ENSMLUG00000014292) #13	ENSMLUG00000022246	ENSMLUG00000010003 #14	ENSMLUG00000005333 #15	RTF2 (ENSMLUG00000005331) #19	CASS4 (ENSMLUG00000010197) #20	ENSMLUG00000025039	ENSMLUG00000026268 #21	AURKA (ENSMLUG00000007925) #22	FAM210B (ENSMLUG00000030626) #23	MC3R (ENSMLUG00000009522)	ENSMLUG00000024112	CBLN4 (ENSMLUG00000009001) #24	DOK5 (ENSMLUG00000009108) #25
Megabat	MODERN SPECIES	305												ENSPVAG00000003259 #18	RTF2 (ENSPVAG00000003257) #19	CASS4 (ENSPVAG00000003256) #20	CSTF1 (ENSPVAG00000003255) #21	AURKA (ENSPVAG00000003252) #22	FAM210B (ENSPVAG00000003250) #23
Equus	ANCESTRAL SPECIES	8	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Donkey	MODERN SPECIES	6	ENSEASG00005023257 #7	PCK1 (ENSEASG00005023259) #8	CTCFL (ENSEASG00005023260) #9	RBM38 (ENSEASG00005024107) #10	ENSEASG00005025783	RAE1 (ENSEASG00005023263) #11	SPO11 (ENSEASG00005023264) #12	ENSEASG00005038095	BMP7 (ENSEASG00005023265) #13	TFAP2C (ENSEASG00005023267) #14	ENSEASG00005025474 #15	ENSEASG00005037027 #18	RTF2 (ENSEASG00005028295) #19	CASS4 (ENSEASG00005023271) #20	CSTF1 (ENSEASG00005023272) #21	AURKA (ENSEASG00005023273) #22	FAM210B (ENSEASG00005023274) #23	MC3R (ENSEASG00005023275)	CBLN4 (ENSEASG00005023277) #24	DOK5 (ENSEASG00005023278) #25	PFDN4 (ENSEASG00005023279) #26	CYP24A1 (ENSEASG00005023280) #27	BCAS1 (ENSEASG00005023282) #28	ZNF217 (ENSEASG00005023283) #29	ENSEASG00005023284 #30	ENSEASG00005023285	TSHZ2 (ENSEASG00005023286) #31	ZFP64 (ENSEASG00005023288) #33	ENSEASG00005031550 #33	SALL4 (ENSEASG00005023290) #34	ATP9A (ENSEASG00005023291) #35
Horse	MODERN SPECIES	14	PCK1 (ENSECAG00000014037) #8	CTCFL (ENSECAG00000009147) #9	RBM38 (ENSECAG00000007700) #10	ENSECAG00000054153	RAE1 (ENSECAG00000016068) #11	SPO11 (ENSECAG00000012964) #12	ENSECAG00000038425	BMP7 (ENSECAG00000002918) #13	TFAP2C (ENSECAG00000021125) #14	ENSECAG00000021060 #15	GCNT7 (ENSECAG00000016323) #18	RTF2 (ENSECAG00000009943) #19	CASS4 (ENSECAG00000009479) #20	CSTF1 (ENSECAG00000008949) #21	FAM210B (ENSECAG00000023915) #23	AURKA (ENSECAG00000023961) #22	MC3R (ENSECAG00000004637)	CBLN4 (ENSECAG00000036307) #24	DOK5 (ENSECAG00000023012) #25	PFDN4 (ENSECAG00000035072) #26	ENSECAG00000053968	CYP24A1 (ENSECAG00000016322) #27	BCAS1 (ENSECAG00000013155) #28	ZNF217 (ENSECAG00000011966) #29	ENSECAG00000040326 #30	TSHZ2 (ENSECAG00000010856) #31	ZFP64 (ENSECAG00000021570) #33	ENSECAG00000052741 #33	SALL4 (ENSECAG00000018533) #34	ATP9A (ENSECAG00000020949) #35	NFATC2 (ENSECAG00000018997) #37
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Xenarthra	ANCESTRAL SPECIES	781											ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23
Sloth	MODERN SPECIES	11246																ENSCHOG00000005976 #22	FAM210B (ENSCHOG00000005970) #23
Armadillo	MODERN SPECIES	4781											ENSDNOG00000038049 #15	RTF2 (ENSDNOG00000013846) #19	GCNT7 (ENSDNOG00000016201) #18	CASS4 (ENSDNOG00000013836) #20	CSTF1 (ENSDNOG00000031858) #21	AURKA (ENSDNOG00000041342) #22	FAM210B (ENSDNOG00000013803) #23
Afrotheria	ANCESTRAL SPECIES	85	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686	ENSGT00940000160847
Afrotheria_a	ANCESTRAL SPECIES	87	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000002234 #7	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686	ENSGT00940000160847
Elephant	MODERN SPECIES	551	PMEPA1 (ENSLAFG00000028967)	ENSLAFG00000011094 #7	PCK1 (ENSLAFG00000009266) #8	CTCFL (ENSLAFG00000009261) #9	RBM38 (ENSLAFG00000032066) #10	RAE1 (ENSLAFG00000004501) #11	SPO11 (ENSLAFG00000015320) #12	BMP7 (ENSLAFG00000006468) #13	ENSLAFG00000006475	TFAP2C (ENSLAFG00000007788) #14	ENSLAFG00000020518 #15	GCNT7 (ENSLAFG00000031589) #18	RTF2 (ENSLAFG00000008399) #19	CASS4 (ENSLAFG00000008394) #20	CSTF1 (ENSLAFG00000008393) #21	AURKA (ENSLAFG00000008392) #22	FAM210B (ENSLAFG00000008388) #23	MC3R (ENSLAFG00000005954)	CBLN4 (ENSLAFG00000004861) #24	ENSLAFG00000031183	DOK5 (ENSLAFG00000030432) #25	PFDN4 (ENSLAFG00000017064) #26	CYP24A1 (ENSLAFG00000017059) #27	BCAS1 (ENSLAFG00000002312) #28	ZNF217 (ENSLAFG00000017592) #29	TSHZ2 (ENSLAFG00000002942) #31	ZFP64 (ENSLAFG00000022960) #33	SALL4 (ENSLAFG00000004309) #34	ATP9A (ENSLAFG00000004303) #35	NFATC2 (ENSLAFG00000015276) #37	ENSLAFG00000013693
Hyrax	MODERN SPECIES	1831											ENSPCAG00000005055 #15	GCNT7 (ENSPCAG00000005042) #18	RTF2 (ENSPCAG00000004987) #19	CASS4 (ENSPCAG00000004884) #20	CSTF1 (ENSPCAG00000004849) #21	AURKA (ENSPCAG00000004804) #22	FAM210B (ENSPCAG00000004784) #23
Tenrec	MODERN SPECIES	28																ENSETEG00000004489 #22
Marsupialia	ANCESTRAL SPECIES	15	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000005057 #15	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000167176	ENSGT00940000165811	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000015137	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00980000202953	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00940000160402 #18	ENSGT00390000010923 #19	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000167176	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00950000183066.a.b.a.b	ENSGT00390000015137	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
Wallaby	MODERN SPECIES	551															ENSMEUG00000015687 #21	ENSMEUG00000015673 #22
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00950000183066.a.b.a.b	ENSGT00390000015137	ENSGT00940000154459.A	ENSGT00390000000724.c.a	ENSGT00390000001912.f #8	ENSGT00940000161524 #9	ENSGT00940000158489 #10	ENSGT00950000183091.B.b.b #11	ENSGT00390000001787 #12	ENSGT00940000156490 #13	ENSGT00950000182848.c.b.a.b #14	ENSGT00390000010923 #19	ENSGT00940000160402 #18	ENSGT00950000183008.a.a.a.a #20	ENSGT00910000144253 #21	ENSGT00940000154900 #22	ENSGT00940000156134 #23	ENSGT01030000234510.a.a.a.a.b	ENSGT00940000159728 #24	ENSGT00940000160725 #25	ENSGT00390000006696 #26	ENSGT00950000182905.b #27	ENSGT00390000003167 #28	ENSGT00940000159884 #29	ENSGT00560000078660 #30	ENSGT00950000183051.a.b #31	ENSGT00940000156405 #33	ENSGT00940000155384.a #34	ENSGT00940000159181 #35	ENSGT00940000156230 #37	ENSGT00940000159686
koala	MODERN SPECIES	11	ENSPCIG00000004738	ENSPCIG00000004764	C20orf85 (ENSPCIG00000003242)	PMEPA1 (ENSPCIG00000035085)	ENSPCIG00000013662 #8	CTCFL (ENSPCIG00000013656) #9	RBM38 (ENSPCIG00000013648) #10	RAE1 (ENSPCIG00000013644) #11	SPO11 (ENSPCIG00000013637) #12	BMP7 (ENSPCIG00000013634) #13	TFAP2C (ENSPCIG00000027341) #14	ENSPCIG00000027339 #18	RTF2 (ENSPCIG00000027337) #19	CASS4 (ENSPCIG00000027335) #20	CSTF1 (ENSPCIG00000027334) #21	AURKA (ENSPCIG00000027333) #22	ENSPCIG00000009225 #23
Common wonbat	MODERN SPECIES	35	RAB22A (ENSVURG00010018482)	ENSVURG00010018488	C20orf85 (ENSVURG00010018496)	PMEPA1 (ENSVURG00010018513)	PCK1 (ENSVURG00010018520) #8	ENSVURG00010018530 #9	RBM38 (ENSVURG00010018536) #10	RAE1 (ENSVURG00010018539) #11	SPO11 (ENSVURG00010018551) #12	BMP7 (ENSVURG00010018589) #13	TFAP2C (ENSVURG00010018603) #14	RTF2 (ENSVURG00010018611) #19	ENSVURG00010018623 #18	CASS4 (ENSVURG00010018629) #20	CSTF1 (ENSVURG00010018632) #21	AURKA (ENSVURG00010018636) #22	FAM210B (ENSVURG00010018643) #23	MC3R (ENSVURG00010018648)	CBLN4 (ENSVURG00010018658) #24	ENSVURG00010018660	DOK5 (ENSVURG00010018666) #25	PFDN4 (ENSVURG00010018680) #26	CYP24A1 (ENSVURG00010018690) #27	ENSVURG00010018716 #28	ZNF217 (ENSVURG00010018725) #29	ENSVURG00010018729 #30	TSHZ2 (ENSVURG00010018738) #31	ZFP64 (ENSVURG00010018745) #33	SALL4 (ENSVURG00010018759) #34	ATP9A (ENSVURG00010018777) #35	NFATC2 (ENSVURG00010018804) #37
Tasmanian devil	MODERN SPECIES	1	C20orf85 (ENSSHAG00000001817)	ENSSHAG00000028430	PMEPA1 (ENSSHAG00000011418)	PCK1 (ENSSHAG00000012814) #8	ENSSHAG00000013360 #9	RBM38 (ENSSHAG00000028982) #10	RAE1 (ENSSHAG00000025272) #11	SPO11 (ENSSHAG00000000680) #12	ENSSHAG00000030841	BMP7 (ENSSHAG00000031864) #13	TFAP2C (ENSSHAG00000011591) #14	ENSSHAG00000012427 #18	RTF2 (ENSSHAG00000012236) #19	CASS4 (ENSSHAG00000012669) #20	CSTF1 (ENSSHAG00000013103) #21	AURKA (ENSSHAG00000021349) #22	FAM210B (ENSSHAG00000030459) #23	MC3R (ENSSHAG00000030709)	ENSSHAG00000028803	CBLN4 (ENSSHAG00000021656) #24	ENSSHAG00000015205	DOK5 (ENSSHAG00000008979) #25	PFDN4 (ENSSHAG00000024204) #26	CYP24A1 (ENSSHAG00000011826) #27	BCAS1 (ENSSHAG00000012411) #28	ZNF217 (ENSSHAG00000030424) #29	ENSSHAG00000031732 #30	TSHZ2 (ENSSHAG00000015362) #31	ZFP64 (ENSSHAG00000021784) #33	SALL4 (ENSSHAG00000018013) #34	ATP9A (ENSSHAG00000025449) #35
Opossum	MODERN SPECIES		ENSMODG00000016515	PCK1 (ENSMODG00000016512) #8	CTCFL (ENSMODG00000016490) #9	RBM38 (ENSMODG00000016458) #10	RAE1 (ENSMODG00000016454) #11	SPO11 (ENSMODG00000023253) #12	BMP7 (ENSMODG00000016448) #13	ENSMODG00000046811	TFAP2C (ENSMODG00000016445) #14	RTF2 (ENSMODG00000042098) #15	RTF2 (ENSMODG00000045867) #19	ENSMODG00000016441 #18	CASS4 (ENSMODG00000016439) #20	ENSMODG00000045993	CSTF1 (ENSMODG00000016436) #21	AURKA (ENSMODG00000016435) #22	ENSMODG00000046314 #23	MC3R (ENSMODG00000016430)	ENSMODG00000027399	CBLN4 (ENSMODG00000016410) #24	ENSMODG00000038379	ENSMODG00000039226	ENSMODG00000025116	ENSMODG00000040608	ENSMODG00000028344	ENSMODG00000047728	DOK5 (ENSMODG00000016405) #25	PFDN4 (ENSMODG00000016401) #26	CYP24A1 (ENSMODG00000016400) #27	ENSMODG00000025790 #28	ZNF217 (ENSMODG00000016392) #29
Platypus	MODERN SPECIES	19	ENSOANG00000009264	PMEPA1 (ENSOANG00000009262)	ENSOANG00000019904	PCK1 (ENSOANG00000009261) #8	ENSOANG00000009260 #9	RBM38 (ENSOANG00000009259) #10	RAE1 (ENSOANG00000009257) #11	SPO11 (ENSOANG00000009256) #12	BMP7 (ENSOANG00000009254) #13	TFAP2C (ENSOANG00000009253) #14	ENSOANG00000009252 #15	ENSOANG00000009251 #18	RTF2 (ENSOANG00000009249) #19	ENSOANG00000009246 #20	CSTF1 (ENSOANG00000037738) #21	AURKA (ENSOANG00000011911) #22	FAM210B (ENSOANG00000041846) #23	MC3R (ENSOANG00000009244)	CBLN4 (ENSOANG00000045264) #24	DOK5 (ENSOANG00000009239) #25	ENSOANG00000019907 #27	ENSOANG00000003140 #28	ENSOANG00000009238 #26	ZNF217 (ENSOANG00000003139) #29	ENSOANG00000043358 #30	TSHZ2 (ENSOANG00000003138) #31	ZFP64 (ENSOANG00000036388) #33	SALL4 (ENSOANG00000008667) #34	ATP9A (ENSOANG00000008668) #35	NFATC2 (ENSOANG00000008671) #37	KCNG1 (ENSOANG00000008672)