Eutheria	ANCESTRAL SPECIES	1	ENSGT01090000260011.A.c.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Suina	ANCESTRAL SPECIES	21	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Pig	MODERN SPECIES	13	ENSSSCG00000054230 #7	ENSSSCG00000050921 #8	ENSSSCG00000036953 #9	ENSSSCG00000059678 #10	ENSSSCG00000063497 #11	ENSSSCG00000056745 #12	NEUROD4 (ENSSSCG00000035778) #13	TESPA1 (ENSSSCG00000000299) #14	ENSSSCG00000060462 #15	PPP1R1A (ENSSSCG00000000298) #16	PDE1B (ENSSSCG00000000297) #17	NCKAP1L (ENSSSCG00000000295) #18	ENSSSCG00000000296 #19	GTSF1 (ENSSSCG00000026333) #20	ITGA5 (ENSSSCG00000000293) #21	ZNF385A (ENSSSCG00000000292) #22	GPR84 (ENSSSCG00000000291) #23	COPZ1 (ENSSSCG00000000290) #24	NFE2 (ENSSSCG00000000289) #25	HNRNPA1 (ENSSSCG00000000288) #26	CBX5 (ENSSSCG00000039191) #27	SMUG1 (ENSSSCG00000024221) #28	HOXC4 (ENSSSCG00000038993) #29	HOXC5 (ENSSSCG00000040798) #30	HOXC6 (ENSSSCG00000030585) #31	HOXC8 (ENSSSCG00000038644) #32	HOXC9 (ENSSSCG00000034474) #33	HOXC10 (ENSSSCG00000022728) #34	HOXC11 (ENSSSCG00000028104) #35	HOXC12 (ENSSSCG00000000281) #36	HOXC13 (ENSSSCG00000000279) #37
Chacoan peccary	MODERN SPECIES	900	ENSCWAG00000011928 #7	ENSCWAG00000011947 #7	ENSCWAG00000011980 #10	ENSCWAG00000012000 #11	ENSCWAG00000012018 #12	NEUROD4 (ENSCWAG00000012031) #13	TESPA1 (ENSCWAG00000012075) #14	ENSCWAG00000012205	ENSCWAG00000012242 #15	PPP1R1A (ENSCWAG00000012290) #16	PDE1B (ENSCWAG00000012376) #17	NCKAP1L (ENSCWAG00000012912) #18	ENSCWAG00000013448 #19	GTSF1 (ENSCWAG00000013502) #20	ITGA5 (ENSCWAG00000013591) #21	ZNF385A (ENSCWAG00000013742) #22	GPR84 (ENSCWAG00000014028) #23	COPZ1 (ENSCWAG00000014076) #24	NFE2 (ENSCWAG00000014469) #25	HNRNPA1 (ENSCWAG00000014510) #26	CBX5 (ENSCWAG00000014634) #27	SMUG1 (ENSCWAG00000014659) #28	HOXC4 (ENSCWAG00000014679) #29	HOXC5 (ENSCWAG00000014699) #30	HOXC6 (ENSCWAG00000014747) #31	HOXC8 (ENSCWAG00000014794) #32	HOXC9 (ENSCWAG00000014825) #33	HOXC10 (ENSCWAG00000014844) #34	HOXC11 (ENSCWAG00000014873) #35	HOXC12 (ENSCWAG00000014902) #36	HOXC13 (ENSCWAG00000014937) #37
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.i #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.j #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Camelidae	ANCESTRAL SPECIES	27	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01090000260011.A.d.b.a.b.a.a	ENSGT01090000260011.A.d.b.a.a.g	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784.y #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Arabian camel	MODERN SPECIES	3	ENSCDRG00005010121	ENSCDRG00005010159	ENSCDRG00005010234	ENSCDRG00005010349 #10	ENSCDRG00005010369 #11	ENSCDRG00005010385 #12	NEUROD4 (ENSCDRG00005010411) #13	TESPA1 (ENSCDRG00005010420) #14	ENSCDRG00005010506	ENSCDRG00005010664 #15	PPP1R1A (ENSCDRG00005010741) #16	PDE1B (ENSCDRG00005010791) #17	NCKAP1L (ENSCDRG00005011045) #18	ENSCDRG00005003272 #20	ITGA5 (ENSCDRG00005003372) #21	ZNF385A (ENSCDRG00005003527) #22	GPR84 (ENSCDRG00005003688) #23	COPZ1 (ENSCDRG00005003721) #24	NFE2 (ENSCDRG00005004200) #25	HNRNPA1L3 (ENSCDRG00005004239) ##26	CBX5 (ENSCDRG00005004307) #27	SMUG1 (ENSCDRG00005004335) #28	HOXC4 (ENSCDRG00005004352) #29	HOXC5 (ENSCDRG00005004372) #30	HOXC6 (ENSCDRG00005004401) #31	HOXC8 (ENSCDRG00005004419) #32	HOXC9 (ENSCDRG00005004435) #33	HOXC10 (ENSCDRG00005004457) #34	HOXC11 (ENSCDRG00005004473) #35	HOXC12 (ENSCDRG00005004486) #36	HOXC13 (ENSCDRG00005004494) #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.i #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.j #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000156832.q	ENSGT00940000161168	ENSGT00390000002689.eb	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.b #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000156832.q	ENSGT00940000161168	ENSGT00390000002689.eb	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.b #24	ENSGT00390000004405.a.n.b #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000156832.q	ENSGT00940000161168	ENSGT00390000002689.eb	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.b #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000156832.q	ENSGT00940000161168	ENSGT00390000002689.eb	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.b #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000161052	ENSGT00940000156832.q	ENSGT00940000161168	ENSGT00390000002689.eb	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.b #24	ENSGT00390000004405.a.n.b #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Narwhal	MODERN SPECIES	313	GDF11 (ENSMMNG00015018182)	CD63 (ENSMMNG00015018140)	RDH5 (ENSMMNG00015018110)	BLOC1S1 (ENSMMNG00015017992)	ITGA7 (ENSMMNG00015017430)	METTL7B (ENSMMNG00015017273)	OR9K2 (ENSMMNG00015017252) #10	NEUROD4 (ENSMMNG00015017244) #13	TESPA1 (ENSMMNG00015017202) #14	PPP1R1A (ENSMMNG00015017160) #16	PDE1B (ENSMMNG00015017024) #17	NCKAP1L (ENSMMNG00015016772) #18	ENSMMNG00015016708 #19	GTSF1 (ENSMMNG00015016672) #20	ITGA5 (ENSMMNG00015016612) #21	ZNF385A (ENSMMNG00015016554) #22	GPR84 (ENSMMNG00015016522) #23	ENSMMNG00015016217 #24	NFE2 (ENSMMNG00015016153) #25	ENSMMNG00015016099 ##26	CBX5 (ENSMMNG00015016030) #27	SMUG1 (ENSMMNG00015016010) #28	HOXC4 (ENSMMNG00015015985) #29	HOXC5 (ENSMMNG00015015958) #30	HOXC6 (ENSMMNG00015015925) #31	HOXC8 (ENSMMNG00015015891) #32	HOXC9 (ENSMMNG00015015871) #33	HOXC10 (ENSMMNG00015015855) #34	HOXC11 (ENSMMNG00015015840) #35	HOXC12 (ENSMMNG00015015809) #36	HOXC13 (ENSMMNG00015015786) #37
Beluga whale	MODERN SPECIES	39	SARNP (ENSDLEG00000006444)	GDF11 (ENSDLEG00000006455)	CD63 (ENSDLEG00000006459)	RDH5 (ENSDLEG00000006468)	BLOC1S1 (ENSDLEG00000006479)	ITGA7 (ENSDLEG00000006516)	METTL7B (ENSDLEG00000006527)	NEUROD4 (ENSDLEG00000006529) #13	TESPA1 (ENSDLEG00000006536) #14	PPP1R1A (ENSDLEG00000006547) #16	PDE1B (ENSDLEG00000006557) #17	NCKAP1L (ENSDLEG00000006570) #18	ENSDLEG00000006617 #19	GTSF1 (ENSDLEG00000006632) #20	ITGA5 (ENSDLEG00000006678) #21	ZNF385A (ENSDLEG00000006709) #22	GPR84 (ENSDLEG00000006731) #23	ENSDLEG00000006745 #24	NFE2 (ENSDLEG00000006760) #25	CBX5 (ENSDLEG00000006762) #27	SMUG1 (ENSDLEG00000006767) #28	HOXC4 (ENSDLEG00000006769) #29	HOXC5 (ENSDLEG00000006775) #30	HOXC6 (ENSDLEG00000006780) #31	HOXC8 (ENSDLEG00000006786) #32	HOXC9 (ENSDLEG00000006790) #33	HOXC10 (ENSDLEG00000006797) #34	HOXC11 (ENSDLEG00000003644) #35	HOXC12 (ENSDLEG00000003651) #36	HOXC13 (ENSDLEG00000003655) #37	CALCOCO1 (ENSDLEG00000003663)
Vaquita	MODERN SPECIES	1	CD63 (ENSPSNG00000012022)	RDH5 (ENSPSNG00000012085)	ENSPSNG00000012195	ITGA7 (ENSPSNG00000012271)	METTL7B (ENSPSNG00000012600)	ENSPSNG00000012643	OR9K2 (ENSPSNG00000012688) #10	NEUROD4 (ENSPSNG00000012705) #13	TESPA1 (ENSPSNG00000012731) #14	PPP1R1A (ENSPSNG00000012865) #16	PDE1B (ENSPSNG00000012973) #17	NCKAP1L (ENSPSNG00000013144) #18	ENSPSNG00000014143 #19	GTSF1 (ENSPSNG00000014259) #20	ITGA5 (ENSPSNG00000014389) #21	ZNF385A (ENSPSNG00000014663) #22	GPR84 (ENSPSNG00000014897) #23	ENSPSNG00000014954 #24	NFE2 (ENSPSNG00000015179) #25	ENSPSNG00000015247 ##26	CBX5 (ENSPSNG00000015418) #27	SMUG1 (ENSPSNG00000015467) #28	HOXC4 (ENSPSNG00000015512) #29	HOXC5 (ENSPSNG00000015554) #30	HOXC6 (ENSPSNG00000015606) #31	HOXC8 (ENSPSNG00000015670) #32	HOXC9 (ENSPSNG00000015714) #33	HOXC10 (ENSPSNG00000015759) #34	HOXC11 (ENSPSNG00000015803) #35	HOXC12 (ENSPSNG00000015844) #36	HOXC13 (ENSPSNG00000015899) #37
Dolphin	MODERN SPECIES	6047																ZNF385A (ENSTTRG00000001650) #22	GPR84 (ENSTTRG00000001652) #23	COPZ1 (ENSTTRG00000001654) #24
Sperm whale	MODERN SPECIES	91															ITGA5 (ENSPCTG00005010618) #21	ZNF385A (ENSPCTG00005010955) #22	GPR84 (ENSPCTG00005011076) #23	COPZ1 (ENSPCTG00005011135) #24	NFE2 (ENSPCTG00005011953) #25
Blue whale	MODERN SPECIES	1	CD63 (ENSBMSG00010010285)	RDH5 (ENSBMSG00010010262)	ENSBMSG00010010246	ITGA7 (ENSBMSG00010009648)	METTL7B (ENSBMSG00010009567)	ENSBMSG00010009557 #10	ENSBMSG00010009550 #10	NEUROD4 (ENSBMSG00010009541) #13	TESPA1 (ENSBMSG00010009522) #14	PPP1R1A (ENSBMSG00010009513) #16	PDE1B (ENSBMSG00010009464) #17	NCKAP1L (ENSBMSG00010009378) #18	ENSBMSG00010009356 #19	ENSBMSG00010009343 #20	ITGA5 (ENSBMSG00010009327) #21	ZNF385A (ENSBMSG00010009271) #22	GPR84 (ENSBMSG00010009235) #23	ENSBMSG00010009194 #24	NFE2 (ENSBMSG00010009158) #25	ENSBMSG00010009105 ##26	CBX5 (ENSBMSG00010009084) #27	SMUG1 (ENSBMSG00010009073) #28	HOXC4 (ENSBMSG00010009056) #29	HOXC5 (ENSBMSG00010009041) #30	HOXC6 (ENSBMSG00010009027) #31	HOXC8 (ENSBMSG00010009022) #32	HOXC9 (ENSBMSG00010009014) #33	HOXC10 (ENSBMSG00010009005) #34	HOXC11 (ENSBMSG00010008997) #35	HOXC12 (ENSBMSG00010008992) #36	HOXC13 (ENSBMSG00010008985) #37
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000157275	ENSGT00390000005848	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.w.a	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00970000194877	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000157275	ENSGT00390000005848	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.w.a	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00970000194877	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000157275	ENSGT00390000005848	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.w.a	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00970000194877	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Caprinae	ANCESTRAL SPECIES		ENSGT00940000154003.A	ENSGT00940000157275	ENSGT00390000005848	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.w.a	ENSGT00940000160526	ENSGT00970000194877	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.b #24	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.i #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Rambouillet Sheep	MODERN SPECIES	19	PLXNC1 (ENSOARG00020012556)	CEP83 (ENSOARG00020013661)	TMCC3 (ENSOARG00020013827)	NDUFA12 (ENSOARG00020013894)	NR2C1 (ENSOARG00020014046)	FGD6 (ENSOARG00020014249)	VEZT (ENSOARG00020014442)	METAP2 (ENSOARG00020014635)	USP44 (ENSOARG00020015356)	ENSOARG00020015432 #15	PPP1R1A (ENSOARG00020015494) #16	PDE1B (ENSOARG00020015560) #17	NCKAP1L (ENSOARG00020016080) #18	GTSF1 (ENSOARG00020016299) #20	ITGA5 (ENSOARG00020016394) #21	ZNF385A (ENSOARG00020016620) #22	ENSOARG00020016959	COPZ1 (ENSOARG00020017012) #24	NFE2 (ENSOARG00020017499) #25	ENSOARG00020017550 #26	CBX5 (ENSOARG00020017769) #27	ENSOARG00020017837 #28	HOXC4 (ENSOARG00020017880) #29	HOXC5 (ENSOARG00020017906) #30	HOXC6 (ENSOARG00020017976) #31	Hoxc8 (ENSOARG00020018004) #32	HOXC9 (ENSOARG00020018036) #33	HOXC10 (ENSOARG00020018091) #34	HOXC11 (ENSOARG00020018118) #35	HOXC12 (ENSOARG00020018162) #36	HOXC13 (ENSOARG00020018195) #37
Goat	MODERN SPECIES	24	CEP83 (ENSCHIG00000013917)	TMCC3 (ENSCHIG00000020232)	NDUFA12 (ENSCHIG00000018443)	NR2C1 (ENSCHIG00000014160)	FGD6 (ENSCHIG00000020399)	VEZT (ENSCHIG00000023527)	ENSCHIG00000024629	USP44 (ENSCHIG00000003220)	ENSCHIG00000024516	GLYCAM1 (ENSCHIG00000013512) #15	PPP1R1A (ENSCHIG00000013673) #16	PDE1B (ENSCHIG00000027138) #17	NCKAP1L (ENSCHIG00000009799) #18	ENSCHIG00000012215 #20	ITGA5 (ENSCHIG00000014497) #21	ZNF385A (ENSCHIG00000016468) #22	GPR84 (ENSCHIG00000002786) #23	COPZ1 (ENSCHIG00000008823) #24	NFE2 (ENSCHIG00000003405) #25	ENSCHIG00000025214 ##26	CBX5 (ENSCHIG00000026108) #27	SMUG1 (ENSCHIG00000009918) #28	HOXC4 (ENSCHIG00000026040) #29	HOXC5 (ENSCHIG00000006426) #30	HOXC6 (ENSCHIG00000013275) #31	HOXC8 (ENSCHIG00000026921) #32	HOXC9 (ENSCHIG00000015937) #33	HOXC10 (ENSCHIG00000006808) #34	HOXC11 (ENSCHIG00000025199) #35	HOXC12 (ENSCHIG00000007346) #36	HOXC13 (ENSCHIG00000025201) #37
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000157275	ENSGT00390000005848.h	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00390000016927.i.b.a	ENSGT00390000000805.c.b.b.a	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Bos	ANCESTRAL SPECIES	2	ENSGT00940000157275	ENSGT00390000005848.h.b	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00390000016927.i.b.a	ENSGT00390000000805.c.b.b.a	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Bos_a	ANCESTRAL SPECIES	3	ENSGT00390000005848.h.b	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00930000151314	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00390000016927.i.b.a	ENSGT00390000000805.c.b.b.a	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Wild yak	MODERN SPECIES	1369					ENSBMUG00000020473	METAP2 (ENSBMUG00000020530)	USP44 (ENSBMUG00000020566)	ENSBMUG00000020576	ENSBMUG00000020585	ENSBMUG00000020602 #15	ENSBMUG00000020621 #16	PDE1B (ENSBMUG00000020651) #17	NCKAP1L (ENSBMUG00000020686) #18	GTSF1 (ENSBMUG00000020707) #20	ITGA5 (ENSBMUG00000020736) #21	ZNF385A (ENSBMUG00000020775) #22	GPR84 (ENSBMUG00000020785) #23	COPZ1 (ENSBMUG00000020850) #24	NFE2 (ENSBMUG00000020901) #25	HNRNPA1 (ENSBMUG00000020945) #26	CBX5 (ENSBMUG00000020997) #27	SMUG1 (ENSBMUG00000021018) #28	HOXC4 (ENSBMUG00000021035) #29	HOXC5 (ENSBMUG00000021043) #30	HOXC6 (ENSBMUG00000021067) #31	HOXC8 (ENSBMUG00000021076) #32	HOXC9 (ENSBMUG00000021090) #33	HOXC10 (ENSBMUG00000021113) #34	HOXC11 (ENSBMUG00000021125) #35	HOXC13 (ENSBMUG00000021179) #37	ENSBMUG00000021194
Domestic yak	MODERN SPECIES	24	NR2C1 (ENSBGRG00000001106)	FGD6 (ENSBGRG00000000973)	VEZT (ENSBGRG00000000945)	ENSBGRG00000000929	METAP2 (ENSBGRG00000000711)	USP44 (ENSBGRG00000000638)	ENSBGRG00000000628	ENSBGRG00000000611	ENSBGRG00000000602	ENSBGRG00000000589 #15	ENSBGRG00000000541 #16	PDE1B (ENSBGRG00000000446) #17	NCKAP1L (ENSBGRG00000000314) #18	GTSF1 (ENSBGRG00000000289) #20	ITGA5 (ENSBGRG00000004717) #21	ZNF385A (ENSBGRG00000004564) #22	ENSBGRG00000004546	ENSBGRG00000004245 ##24	NFE2 (ENSBGRG00000004167) #25	HNRNPA1 (ENSBGRG00000004082) #26	CBX5 (ENSBGRG00000004059) #27	SMUG1 (ENSBGRG00000004028) #28	HOXC5 (ENSBGRG00000003993) #30	HOXC4 (ENSBGRG00000003972) #29	HOXC6 (ENSBGRG00000003924) #31	HOXC8 (ENSBGRG00000003899) #32	HOXC10 (ENSBGRG00000003864) #34	HOXC9 (ENSBGRG00000003819) #33	HOXC12 (ENSBGRG00000003794) #36	HOXC13 (ENSBGRG00000003766) #37	ENSBGRG00000003755
Bos_b	ANCESTRAL SPECIES	4	ENSGT00390000005848.h.a.a	ENSGT00940000158165	ENSGT00940000156334	ENSGT00390000003290	ENSGT00940000155016.x	ENSGT00940000160526	ENSGT00390000016927.i.b.a	ENSGT00970000194877	ENSGT00390000000805.c.b.b.a	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00390000004405.a.n.b #24	ENSGT00390000004405.a.n.a.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Hybrid Bos Indicus	MODERN SPECIES	24	TMCC3 (ENSBIXG00005012300)	ENSBIXG00005012322	NR2C1 (ENSBIXG00005012362)	FGD6 (ENSBIXG00005012389)	VEZT (ENSBIXG00005012428)	METAP2 (ENSBIXG00005001385)	ENSBIXG00005012602	USP44 (ENSBIXG00005012628)	ENSBIXG00005012642	ENSBIXG00005012746 #15	PPP1R1A (ENSBIXG00005001412) #16	PDE1B (ENSBIXG00005012829) #17	NCKAP1L (ENSBIXG00005001435) #18	GTSF1 (ENSBIXG00005012927) #20	ITGA5 (ENSBIXG00005012943) #21	ZNF385A (ENSBIXG00005013048) #22	COPZ1 (ENSBIXG00005013277) #24	NFE2 (ENSBIXG00005013365) #25	HNRNPA1 (ENSBIXG00005013410) #26	CBX5 (ENSBIXG00005013447) #27	SMUG1 (ENSBIXG00005013477) #28	HOXC5 (ENSBIXG00005013541) #30	HOXC4 (ENSBIXG00005001661) #29	HOXC6 (ENSBIXG00005013579) #31	HOXC8 (ENSBIXG00005013635) #32	HOXC9 (ENSBIXG00005013659) #33	HOXC10 (ENSBIXG00005013696) #34	HOXC11 (ENSBIXG00005013716) #35	HOXC12 (ENSBIXG00005013757) #36	HOXC13 (ENSBIXG00005001711) #37	ENSBIXG00005013795
Cow	MODERN SPECIES	24	VEZT (ENSBTAG00000014044)	ENSBTAG00000053941	ENSBTAG00000052805	ENSBTAG00000049200	METAP2 (ENSBTAG00000019944)	USP44 (ENSBTAG00000019946)	ENSBTAG00000010711	MUCL1 (ENSBTAG00000051641)	ENSBTAG00000023670	GLYCAM1 (ENSBTAG00000013417) #15	PPP1R1A (ENSBTAG00000010907) #16	PDE1B (ENSBTAG00000004337) #17	NCKAP1L (ENSBTAG00000019686) #18	GTSF1 (ENSBTAG00000018085) #20	ITGA5 (ENSBTAG00000013745) #21	ZNF385A (ENSBTAG00000015604) #22	GPR84 (ENSBTAG00000015592)	COPZ1 (ENSBTAG00000005384) #24	NFE2 (ENSBTAG00000001562) #25	HNRNPA1 (ENSBTAG00000001553) #26	CBX5 (ENSBTAG00000006246) #27	SMUG1 (ENSBTAG00000021974) #28	HOXC4 (ENSBTAG00000003304) #29	HOXC5 (ENSBTAG00000009634) #30	HOXC6 (ENSBTAG00000009238) #31	HOXC8 (ENSBTAG00000012149) #32	HOXC9 (ENSBTAG00000005606) #33	HOXC10 (ENSBTAG00000003278) #34	HOXC11 (ENSBTAG00000006879) #35	HOXC12 (ENSBTAG00000000924) #36	HOXC13 (ENSBTAG00000000923) #37
American bison	MODERN SPECIES	3297	TMCC3 (ENSBBBG00000018057)	ENSBBBG00000018074	NR2C1 (ENSBBBG00000007952)	FGD6 (ENSBBBG00000018222)	VEZT (ENSBBBG00000018251)	METAP2 (ENSBBBG00000018346)	USP44 (ENSBBBG00000018375)	ENSBBBG00000018385	ENSBBBG00000004491	ENSBBBG00000018397 #15	PPP1R1A (ENSBBBG00000018403) #16	PDE1B (ENSBBBG00000018455) #17	NCKAP1L (ENSBBBG00000004554) #18	ENSBBBG00000018522 #20	ITGA5 (ENSBBBG00000004578) #21	ZNF385A (ENSBBBG00000018617) #22	GPR84 (ENSBBBG00000018621) #23	COPZ1 (ENSBBBG00000008941) #24	NFE2 (ENSBBBG00000007801) #25	HNRNPA1 (ENSBBBG00000004708) #26	CBX5 (ENSBBBG00000004719) #27	ENSBBBG00000018790 #28	HOXC4 (ENSBBBG00000004725) #29	HOXC5 (ENSBBBG00000004731) #30	HOXC6 (ENSBBBG00000004735) #31	HOXC8 (ENSBBBG00000004739) #32	HOXC9 (ENSBBBG00000018824) #33	HOXC10 (ENSBBBG00000018829) #34	HOXC11 (ENSBBBG00000004745) #35	HOXC12 (ENSBBBG00000004755) #36	HOXC13 (ENSBBBG00000004761) #37
Siberian musk deer	MODERN SPECIES	320	ENSMMSG00000009890	NR2C1 (ENSMMSG00000009790)	ENSMMSG00000009770	ENSMMSG00000009751	FGD6 (ENSMMSG00000009565)	ENSMMSG00000009531	ENSMMSG00000009068	USP44 (ENSMMSG00000008995)	ENSMMSG00000008970	ENSMMSG00000008952 #15	PPP1R1A (ENSMMSG00000008915) #16	PDE1B (ENSMMSG00000008755) #17	NCKAP1L (ENSMMSG00000008664) #18	GTSF1 (ENSMMSG00000008602) #20	ITGA5 (ENSMMSG00000008546) #21	ZNF385A (ENSMMSG00000008397) #22	GPR84 (ENSMMSG00000008354) #23	ENSMMSG00000008020 #24	NFE2 (ENSMMSG00000007969) #25	HNRNPA1 (ENSMMSG00000007466) #26	CBX5 (ENSMMSG00000007428) #27	SMUG1 (ENSMMSG00000007402) #28	HOXC4 (ENSMMSG00000007376) #29	HOXC5 (ENSMMSG00000007356) #30	HOXC6 (ENSMMSG00000007317) #31	HOXC8 (ENSMMSG00000007287) #32	HOXC9 (ENSMMSG00000007268) #33	HOXC10 (ENSMMSG00000007244) #34	HOXC11 (ENSMMSG00000007220) #35	HOXC12 (ENSMMSG00000007203) #36	HOXC13 (ENSMMSG00000007187) #37
Yarkand deer	MODERN SPECIES	22	TMCC3 (ENSCHYG00000001134)	NDUFA12 (ENSCHYG00000001181)	NR2C1 (ENSCHYG00000001219)	FGD6 (ENSCHYG00000001259)	VEZT (ENSCHYG00000001339)	ENSCHYG00000001380	ENSCHYG00000001416	USP44 (ENSCHYG00000001550)	ENSCHYG00000001575	ENSCHYG00000001601 #15	ENSCHYG00000001619 #16	PDE1B (ENSCHYG00000001668) #17	NCKAP1L (ENSCHYG00000001786) #18	ENSCHYG00000001877 #20	ITGA5 (ENSCHYG00000001914) #21	ZNF385A (ENSCHYG00000002056) #22	GPR84 (ENSCHYG00000002110) #23	COPZ1 (ENSCHYG00000002170) #24	NFE2 (ENSCHYG00000002451) #25	ENSCHYG00000002483 #26	CBX5 (ENSCHYG00000002608) #27	ENSCHYG00000002622 #28	HOXC4 (ENSCHYG00000002631) #29	HOXC5 (ENSCHYG00000002637) #30	HOXC6 (ENSCHYG00000002655) #31	HOXC8 (ENSCHYG00000002673) #32	HOXC9 (ENSCHYG00000002684) #33	HOXC10 (ENSCHYG00000002694) #34	HOXC11 (ENSCHYG00000002704) #35	HOXC12 (ENSCHYG00000002710) #36	HOXC13 (ENSCHYG00000002721) #37
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.a.j ##7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Chiroptera	ANCESTRAL SPECIES	4	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.j ##7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01090000260006.D.a.b	ENSGT01090000260006.D.a.a	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.j ##7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010004190	OR6C6 (ENSRFEG00010004183)	ENSRFEG00010004174	ENSRFEG00010004164	ENSRFEG00010004155 #8	ENSRFEG00010004121	NEUROD4 (ENSRFEG00010004100) #13	TESPA1 (ENSRFEG00010004076) #14	ENSRFEG00010004059	ENSRFEG00010004045 #15	PPP1R1A (ENSRFEG00010004029) #16	PDE1B (ENSRFEG00010003985) #17	NCKAP1L (ENSRFEG00010003799) #18	GTSF1 (ENSRFEG00010003655) #20	ITGA5 (ENSRFEG00010003562) #21	ZNF385A (ENSRFEG00010003487) #22	ENSRFEG00010003458	COPZ1 (ENSRFEG00010003353) #24	NFE2 (ENSRFEG00010003234) #25	ENSRFEG00010003146 #26	CBX5 (ENSRFEG00010003088) #27	SMUG1 (ENSRFEG00010003070) #28	HOXC4 (ENSRFEG00010003046) #29	HOXC5 (ENSRFEG00010003028) #30	HOXC6 (ENSRFEG00010003005) #31	HOXC8 (ENSRFEG00010002977) #32	HOXC9 (ENSRFEG00010002965) #33	HOXC10 (ENSRFEG00010002942) #34	HOXC11 (ENSRFEG00010002928) #35	HOXC12 (ENSRFEG00010002916) #36	HOXC13 (ENSRFEG00010002899) #37
Microbat	MODERN SPECIES	1097									PPP1R1A (ENSMLUG00000012998) #16	PDE1B (ENSMLUG00000012983) #17	NCKAP1L (ENSMLUG00000012968) #18	ENSMLUG00000024563 #19	ENSMLUG00000002432	ENSMLUG00000012961 #20	ITGA5 (ENSMLUG00000012946) #21	ZNF385A (ENSMLUG00000012937) #22	GPR84 (ENSMLUG00000012933) #23	COPZ1 (ENSMLUG00000015971) #24	NFE2 (ENSMLUG00000011437) #25	ENSMLUG00000000648 ##26	CBX5 (ENSMLUG00000000652) #27	SMUG1 (ENSMLUG00000000491) #28	HOXC4 (ENSMLUG00000017706) #29	HOXC5 (ENSMLUG00000000488) #30	HOXC6 (ENSMLUG00000000485) #31	HOXC8 (ENSMLUG00000003097) #32	HOXC9 (ENSMLUG00000000483) #33	HOXC10 (ENSMLUG00000000482) #34	HOXC11 (ENSMLUG00000000470) #35	HOXC12 (ENSMLUG00000026984) #36	HOXC13 (ENSMLUG00000015050) #37
Megabat	MODERN SPECIES	3593											PPP1R1A (ENSPVAG00000000337) #16	PDE1B (ENSPVAG00000000336) #17	NCKAP1L (ENSPVAG00000000335) #18	GTSF1 (ENSPVAG00000000333) #20	ITGA5 (ENSPVAG00000000330) #21	ZNF385A (ENSPVAG00000000328) #22	COPZ1 (ENSPVAG00000000324) #24	NFE2 (ENSPVAG00000000323) #25	HNRNPA1 (ENSPVAG00000000322) #26	CBX5 (ENSPVAG00000000321) #27
Equus	ANCESTRAL SPECIES	16	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.i #10	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.j #10	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.a.a.a.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.a.a.a.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Donkey	MODERN SPECIES	14	ENSEASG00005036538 #10	ENSEASG00005024448 #10	ENSEASG00005023714 #7	ENSEASG00005027806 #7	ENSEASG00005032061 #11	ENSEASG00005027676 #12	NEUROD4 (ENSEASG00005010285) #13	TESPA1 (ENSEASG00005010282) #14	ENSEASG00005030245 #15	ENSEASG00005038614 #16	PDE1B (ENSEASG00005010274) #17	NCKAP1L (ENSEASG00005010266) #18	ENSEASG00005010262 #19	GTSF1 (ENSEASG00005010260) #20	ITGA5 (ENSEASG00005010252) #21	ZNF385A (ENSEASG00005010244) #22	GPR84 (ENSEASG00005010241) #23	COPZ1 (ENSEASG00005010233) #24	NFE2 (ENSEASG00005036003) #25	HNRNPA1 (ENSEASG00005010182) #26	CBX5 (ENSEASG00005010165) #27	SMUG1 (ENSEASG00005010163) #28	HOXC4 (ENSEASG00005010161) #29	HOXC5 (ENSEASG00005010157) #30	ENSEASG00005010153 #31	HOXC8 (ENSEASG00005024216) #32	HOXC9 (ENSEASG00005010148) #33	HOXC10 (ENSEASG00005010143) #34	HOXC11 (ENSEASG00005010141) #35	HOXC12 (ENSEASG00005010128) #36	HOXC13 (ENSEASG00005032367) #37
Horse	MODERN SPECIES	27	OR9K2L (ENSECAG00000048864) #10	OR9K2Q (ENSECAG00000050790) #7	ENSECAG00000051066 #7	OR9K7 (ENSECAG00000036240) #11	OR9K1 (ENSECAG00000040309) #12	NEUROD4 (ENSECAG00000001002) #13	TESPA1 (ENSECAG00000007656) #14	ENSECAG00000051815	ENSECAG00000053965 #15	PPP1R1A (ENSECAG00000007612) #16	PDE1B (ENSECAG00000048352) #17	ENSECAG00000049601 #19	GTSF1 (ENSECAG00000013618) #20	NCKAP1L (ENSECAG00000014435) #18	ITGA5 (ENSECAG00000024979) #21	ZNF385A (ENSECAG00000024939) #22	GPR84 (ENSECAG00000000949)	COPZ1 (ENSECAG00000024555) #24	HNRNPA1 (ENSECAG00000008676) #26	NFE2 (ENSECAG00000024536) #25	CBX5 (ENSECAG00000008101) #27	SMUG1 (ENSECAG00000007776) #28	HOXC5 (ENSECAG00000004151) #30	HOXC6 (ENSECAG00000003682) #29	HOXC8 (ENSECAG00000000932) #32	HOXC9 (ENSECAG00000044561) #33	HOXC10 (ENSECAG00000034365) #34	HOXC12 (ENSECAG00000024893) #36	HOXC11 (ENSECAG00000024900) #35	HOXC13 (ENSECAG00000024867) #37	CALCOCO1 (ENSECAG00000024023)
Carnivora	ANCESTRAL SPECIES	3	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Felidae	ANCESTRAL SPECIES	2	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.h #10	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.g.a.a.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.g.a.a.b #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784.o.a #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Cat	MODERN SPECIES	238	ENSFCAG00000033930 #10	ENSFCAG00000045805	ENSFCAG00000051117	ENSFCAG00000043516 #12	ENSFCAG00000037627 #10	ENSFCAG00000044268 #11	NEUROD4 (ENSFCAG00000013284) #13	TESPA1 (ENSFCAG00000013282) #14	ENSFCAG00000053522 #15	PPP1R1A (ENSFCAG00000010159) #16	PDE1B (ENSFCAG00000010158) #17	ENSFCAG00000031316 #19	NCKAP1L (ENSFCAG00000010157) #18	ENSFCAG00000010156 #20	ITGA5 (ENSFCAG00000010155) #21	ZNF385A (ENSFCAG00000010154) #22	GPR84 (ENSFCAG00000010153) #23	COPZ1 (ENSFCAG00000032605) #24	NFE2 (ENSFCAG00000025666) #25	HNRNPA1 (ENSFCAG00000010150) #26	CBX5 (ENSFCAG00000041615) #27	SMUG1 (ENSFCAG00000010148) #28	HOXC4 (ENSFCAG00000037382) #29	HOXC5 (ENSFCAG00000032832) #30	HOXC6 (ENSFCAG00000032656) #31	HOXC8 (ENSFCAG00000004769) #32	HOXC9 (ENSFCAG00000031037) #33	HOXC10 (ENSFCAG00000011202) #34	HOXC11 (ENSFCAG00000038352) #35	HOXC12 (ENSFCAG00000023389) #36	HOXC13 (ENSFCAG00000044858) #37
Panthera	ANCESTRAL SPECIES		ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.h #10	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.g.a.a.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.a.i.a.g.a.a.b #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784.o.a #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Panthera_a	ANCESTRAL SPECIES	5						ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784.o.a #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
leopard	MODERN SPECIES	77								NEUROD4 (ENSPPRG00000015118) #13	TESPA1 (ENSPPRG00000003150) #14	PPP1R1A (ENSPPRG00000003234) #16	PDE1B (ENSPPRG00000003378) #17	NCKAP1L (ENSPPRG00000004044) #18	ENSPPRG00000004157 #19	ENSPPRG00000004344 #20	ITGA5 (ENSPPRG00000006266) #21	ZNF385A (ENSPPRG00000007378) #22	GPR84 (ENSPPRG00000015240) #23	COPZ1 (ENSPPRG00000009421) #24	NFE2 (ENSPPRG00000010846) #25	HNRNPA1 (ENSPPRG00000012587) #26	CBX5 (ENSPPRG00000013006) #27	SMUG1 (ENSPPRG00000013822) #28	HOXC4 (ENSPPRG00000015044) #29	HOXC5 (ENSPPRG00000015137) #30	ENSPPRG00000015418 #31	HOXC8 (ENSPPRG00000015585) #32	HOXC9 (ENSPPRG00000015964) #33	HOXC10 (ENSPPRG00000016146) #34	HOXC11 (ENSPPRG00000016716) #35	HOXC12 (ENSPPRG00000017257) #36	ENSPPRG00000017468 #37
lion	MODERN SPECIES	7	ENSPLOG00000005891	ENSPLOG00000005857	ENSPLOG00000005836	ENSPLOG00000005796	OR6C75 (ENSPLOG00000005783)	ENSPLOG00000005776 #11	NEUROD4 (ENSPLOG00000005763) #13	TESPA1 (ENSPLOG00000005741) #14	ENSPLOG00000005724 #15	PPP1R1A (ENSPLOG00000005705) #16	PDE1B (ENSPLOG00000005622) #17	NCKAP1L (ENSPLOG00000005508) #18	ENSPLOG00000005478 #19	GTSF1 (ENSPLOG00000005457) #20	ITGA5 (ENSPLOG00000005387) #21	ZNF385A (ENSPLOG00000005319) #22	GPR84 (ENSPLOG00000005296) #23	COPZ1 (ENSPLOG00000005158) #24	NFE2 (ENSPLOG00000005068) #25	HNRNPA1 (ENSPLOG00000004985) #26	CBX5 (ENSPLOG00000004916) #27	SMUG1 (ENSPLOG00000004904) #28	HOXC4 (ENSPLOG00000004898) #29	HOXC5 (ENSPLOG00000004882) #30	HOXC6 (ENSPLOG00000004865) #31	HOXC8 (ENSPLOG00000004851) #32	HOXC9 (ENSPLOG00000004844) #33	HOXC10 (ENSPLOG00000004820) #34	HOXC11 (ENSPLOG00000004812) #35	HOXC12 (ENSPLOG00000004799) #36	HOXC13 (ENSPLOG00000004788) #37
Tiger	MODERN SPECIES	160	ENSPTIG00000005809	OR10A7 (ENSPTIG00000005803)	ENSPTIG00000005795 #7	ENSPTIG00000005793	ENSPTIG00000005784 #10	ENSPTIG00000007137 #10	ENSPTIG00000005774 #11	NEUROD4 (ENSPTIG00000005770) #13	TESPA1 (ENSPTIG00000005862) #14	PPP1R1A (ENSPTIG00000005620) #16	PDE1B (ENSPTIG00000000482) #17	NCKAP1L (ENSPTIG00000020912) #18	ENSPTIG00000020670 #19	ENSPTIG00000020415 #20	ITGA5 (ENSPTIG00000019878) #21	ZNF385A (ENSPTIG00000018804) #22	GPR84 (ENSPTIG00000005688) #23	COPZ1 (ENSPTIG00000016765) #24	NFE2 (ENSPTIG00000016194) #25	HNRNPA1 (ENSPTIG00000015170) #26	CBX5 (ENSPTIG00000014891) #27	SMUG1 (ENSPTIG00000014332) #28	HOXC4 (ENSPTIG00000014254) #29	HOXC5 (ENSPTIG00000014190) #30	HOXC6 (ENSPTIG00000014044) #31	HOXC8 (ENSPTIG00000013899) #32	HOXC9 (ENSPTIG00000013688) #33	HOXC10 (ENSPTIG00000013134) #34	HOXC11 (ENSPTIG00000012999) #35	ENSPTIG00000012759	CALCOCO1 (ENSPTIG00000010683)
Caniformia	ANCESTRAL SPECIES	19	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Ursidae	ANCESTRAL SPECIES	36	ENSGT01100000263494.a.a.a.a.a.d.a.i.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01090000260011.A.d.b.b	ENSGT01090000260006.A.c.a.b.a.j	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Ursus	ANCESTRAL SPECIES	208									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.b.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32
American black bear	MODERN SPECIES	1072													ENSUAMG00000021668 #19	GTSF1 (ENSUAMG00000021669) #20	ITGA5 (ENSUAMG00000021685) #21	ZNF385A (ENSUAMG00000021970) #22	GPR84 (ENSUAMG00000021971) #23	COPZ1 (ENSUAMG00000021972) #24	NFE2 (ENSUAMG00000021975) #25	CBX5 (ENSUAMG00000021976) #27	SMUG1 (ENSUAMG00000021978) #28
Polar bear	MODERN SPECIES	262	ENSUMAG00000011341	ENSUMAG00000011332	ENSUMAG00000011329	ENSUMAG00000011326	ENSUMAG00000011323	ENSUMAG00000011320	ENSUMAG00000011317	TESPA1 (ENSUMAG00000011308) #14	ENSUMAG00000011298 #15	PPP1R1A (ENSUMAG00000011296) #16	PDE1B (ENSUMAG00000011288) #17	NCKAP1L (ENSUMAG00000011282) #18	ENSUMAG00000011281 #19	GTSF1 (ENSUMAG00000011279) #20	ITGA5 (ENSUMAG00000010654) #21	ZNF385A (ENSUMAG00000010548) #22	GPR84 (ENSUMAG00000010547) #23	COPZ1 (ENSUMAG00000010544) #24	NFE2 (ENSUMAG00000010542) #25	ENSUMAG00000010541 ##26	CBX5 (ENSUMAG00000010538) #27	SMUG1 (ENSUMAG00000010531) #28	HOXC5 (ENSUMAG00000010526) #30	HOXC6 (ENSUMAG00000010520) #31	HOXC8 (ENSUMAG00000010514) #32	ENSUMAG00000010512	HOXC10 (ENSUMAG00000010505) #34	CALCOCO1 (ENSUMAG00000010484)	ENSUMAG00000010480	ATF7 (ENSUMAG00000010473)	NPFF (ENSUMAG00000010468)
Giant Panda	MODERN SPECIES	7	ENSAMEG00000025224	ENSAMEG00000019180 #8	ENSAMEG00000028367 #12	ENSAMEG00000030110 #10	ENSAMEG00000027553 #11	ENSAMEG00000024204 #12	NEUROD4 (ENSAMEG00000018597) #13	TESPA1 (ENSAMEG00000003989) #14	ENSAMEG00000001106 #15	PPP1R1A (ENSAMEG00000001096) #16	PDE1B (ENSAMEG00000001050) #17	NCKAP1L (ENSAMEG00000000960) #18	ENSAMEG00000000958 #19	GTSF1 (ENSAMEG00000000939) #20	ITGA5 (ENSAMEG00000000779) #21	ZNF385A (ENSAMEG00000000767) #22	ENSAMEG00000019330	COPZ1 (ENSAMEG00000025997) #24	NFE2 (ENSAMEG00000000747) #25	HNRNPA1 (ENSAMEG00000000717) #26	CBX5 (ENSAMEG00000000707) #27	SMUG1 (ENSAMEG00000000705) #28	HOXC4 (ENSAMEG00000026128) #29	HOXC5 (ENSAMEG00000000691) #30	HOXC6 (ENSAMEG00000000686) #31	HOXC8 (ENSAMEG00000029788) #32	HOXC9 (ENSAMEG00000029065) #33	HOXC10 (ENSAMEG00000000673) #34	HOXC11 (ENSAMEG00000000668) #35	HOXC12 (ENSAMEG00000026141) #36	HOXC13 (ENSAMEG00000029355) #37
Mustelinae	ANCESTRAL SPECIES	33						ENSGT01100000263494.a.a.a.a.a.d.a.i.a #10	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784.q #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT01100000263512.a.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.h.b ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
American mink	DUPLICATION
American mink	MODERN SPECIES	304										PPP1R1A (ENSNVIG00000003014) #16	PDE1B (ENSNVIG00000002928) #17	NCKAP1L (ENSNVIG00000002850) #18	ENSNVIG00000002839 #19	ENSNVIG00000002815 #20	ITGA5 (ENSNVIG00000002759) #21	ENSNVIG00000002661 #22	GPR84 (ENSNVIG00000002653)	COPZ1 (ENSNVIG00000002494) #24	NFE2 (ENSNVIG00000002464) #25	CBX5 (ENSNVIG00000002437) #27	SMUG1 (ENSNVIG00000002426) #28	HOXC4 (ENSNVIG00000002392) #29	HOXC5 (ENSNVIG00000002379) #30	HOXC8 (ENSNVIG00000002365) #32	HOXC6 (ENSNVIG00000002310) #31	HXC10 (ENSNVIG00000002291) #34	HOXC11 (ENSNVIG00000002270) #35	HOXC12 (ENSNVIG00000002217) #36	HOXC13 (ENSNVIG00000002210) #37	CALCOCO1 (ENSNVIG00000002092)	ENSNVIG00000002061
American mink	MODERN SPECIES	93															LRP1B (ENSNVIG00000013726)	ENSNVIG00000013867 #22	NXPH2 (ENSNVIG00000013872)	SPOPL (ENSNVIG00000013883)	HNMT (ENSNVIG00000013889)	THSD7B (ENSNVIG00000013908)	CXCR4 (ENSNVIG00000013959)	DARS1 (ENSNVIG00000013966)	MCM6 (ENSNVIG00000013989)	LCT (ENSNVIG00000013999)	UBXN4 (ENSNVIG00000014041)	R3HDM1 (ENSNVIG00000014091)	ENSNVIG00000014428	ZRAB3 (ENSNVIG00000014442)	RAB3GAP1 (ENSNVIG00000014588)	ENSNVIG00000014683	CCNT2 (ENSNVIG00000014690)
Ferret	MODERN SPECIES	362		ENSMPUG00000018955 #7	ENSMPUG00000005500 #11	NEUROD4 (ENSMPUG00000018960) #13	TESPA1 (ENSMPUG00000005511) #14	ENSMPUG00000005529	ENSMPUG00000005533	ENSMPUG00000005545	ENSMPUG00000005557	PPP1R1A (ENSMPUG00000005566) #16	PDE1B (ENSMPUG00000005623) #17	NCKAP1L (ENSMPUG00000005637) #18	ENSMPUG00000005664 #19	ENSMPUG00000005669 #20	ITGA5 (ENSMPUG00000005706) #21	ZNF385A (ENSMPUG00000005716) #22	ENSMPUG00000018969	COPZ1 (ENSMPUG00000005721) #24	NFE2 (ENSMPUG00000005728) #25	ENSMPUG00000005735 ##26	CBX5 (ENSMPUG00000005824) #27	SMUG1 (ENSMPUG00000005833) #28	HOXC4 (ENSMPUG00000005838) #29	HOXC5 (ENSMPUG00000005841) #30	HOXC6 (ENSMPUG00000005848) #31	HOXC8 (ENSMPUG00000005854) #32	HOXC9 (ENSMPUG00000005862) #33	HOXC10 (ENSMPUG00000005868) #34	HOXC11 (ENSMPUG00000005876) #35	HOXC12 (ENSMPUG00000005886) #36	HOXC13 (ENSMPUG00000005890) #37
Canidae	ANCESTRAL SPECIES	8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.g.a #7	ENSGT01090000260011.A.d.b.b.bb.b	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.g.b #7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.h #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Red fox	MODERN SPECIES	254	ENSVVUG00000023636 ##7	ENSVVUG00000023640 #7	ENSVVUG00000023641	ENSVVUG00000023643 #7	ENSVVUG00000023646 #8	ENSVVUG00000023649 #7	ENSVVUG00000023651 #11	NEUROD4 (ENSVVUG00000023655) #13	TESPA1 (ENSVVUG00000023659) #14	ENSVVUG00000023665 #16	PDE1B (ENSVVUG00000023667) #17	NCKAP1L (ENSVVUG00000023679) #18	ENSVVUG00000023684 #19	ENSVVUG00000023687 #20	ITGA5 (ENSVVUG00000023718) #21	ZNF385A (ENSVVUG00000024384) #22	GPR84 (ENSVVUG00000024387) #23	COPZ1 (ENSVVUG00000024390) #24	ENSVVUG00000024401	NFE2 (ENSVVUG00000024409) #25	ENSVVUG00000024413 ##26	CBX5 (ENSVVUG00000024417) #27	ENSVVUG00000024422	SMUG1 (ENSVVUG00000024425) #28	SEMA3E (ENSVVUG00000024430)
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT01090000260011.A.d.b.b.bb.b.b	ENSGT01090000260011.A.d.b.b.bb.b.a	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.g.b #7	ENSGT01100000263494.a.a.a.a.a.d.a.i.b.h #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Dingo	MODERN SPECIES	202	ENSCAFG00020018430 #7	ENSCAFG00020018431	ENSCAFG00020018433	ENSCAFG00020018435 #12	ENSCAFG00020018436 #7	ENSCAFG00020018438 #7	ENSCAFG00020018440 #11	NEUROD4 (ENSCAFG00020018441) #13	TESPA1 (ENSCAFG00020018443) #14	PPP1R1A (ENSCAFG00020018449) #16	PDE1B (ENSCAFG00020018452) #17	NCKAP1L (ENSCAFG00020018536) #18	ENSCAFG00020020371 #19	GTSF1 (ENSCAFG00020020373) #20	ITGA5 (ENSCAFG00020020389) #21	ZNF385A (ENSCAFG00020020566) #22	GPR84 (ENSCAFG00020020589) #23	COPZ1 (ENSCAFG00020020592) #24	ENSCAFG00020020600	NFE2 (ENSCAFG00020020604) #25	CBX5 (ENSCAFG00020020609) #27	ENSCAFG00020020614	SMUG1 (ENSCAFG00020020617) #28	HOXC4 (ENSCAFG00020020631) #29	HOXC5 (ENSCAFG00020020637) #30	HOXC6 (ENSCAFG00020020642) #31	HOXC8 (ENSCAFG00020020648) #32	HOXC9 (ENSCAFG00020020653) #33	HOXC10 (ENSCAFG00020020660) #34	HOXC11 (ENSCAFG00020020666) #35	HOXC12 (ENSCAFG00020020691) #36
Dog	MODERN SPECIES	19	OR6C75 (ENSCAFG00845015482)	ENSCAFG00845015503	OR9K1 (ENSCAFG00845015515) #12	ENSCAFG00845015538 #8	OR9K2D (ENSCAFG00845015567) #7	OR9K2 (ENSCAFG00845015593) #7	OR9K7 (ENSCAFG00845015624) #11	NEUROD4 (ENSCAFG00845015646) #13	TESPA1 (ENSCAFG00845015676) #14	PPP1R1A (ENSCAFG00845015732) #16	PDE1B (ENSCAFG00845015903) #17	NCKAP1L (ENSCAFG00845016220) #18	ENSCAFG00845016576 #19	ENSCAFG00845016667 #20	ITGA5 (ENSCAFG00845016791) #21	ZNF385A (ENSCAFG00845017040) #22	GPR84 (ENSCAFG00845017349) #23	COPZ1 (ENSCAFG00845017389) #24	ENSCAFG00845017498	NFE2 (ENSCAFG00845017550) #25	HNRNPA1 (ENSCAFG00845017656) #26	CBX5 (ENSCAFG00845017851) #27	ENSCAFG00845017961 #28	HOXC4 (ENSCAFG00845018094) #29	HOXC5 (ENSCAFG00845018144) #30	HOXC6 (ENSCAFG00845018203) #31	HOXC8 (ENSCAFG00845018237) #32	ENSCAFG00845018282 #33	HOXC10 (ENSCAFG00845018342) #34	HOXC11 (ENSCAFG00845018373) #35	HOXC12 (ENSCAFG00845018411) #36
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Glires	ANCESTRAL SPECIES	4	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Rodentia	ANCESTRAL SPECIES	5	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Muroidea	ANCESTRAL SPECIES	31									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Muroidea_A	ANCESTRAL SPECIES	9									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Cricetidae	ANCESTRAL SPECIES	10									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816.a #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000156186	ENSGT00940000159229	ENSGT00510000048601.b	ENSGT00510000048601.a	ENSGT00940000158318	ENSGT00940000162655	ENSGT00940000156596	ENSGT00390000014623	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816.a #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Mettl21e (ENSCGRG00001014330)	Ercc5 (ENSCGRG00001015414)	Bivm (ENSCGRG00001013666)	Poglut2 (ENSCGRG00001016741)	Tex30 (ENSCGRG00001013834)	Mettl21c (ENSCGRG00001014510)	Tpp2 (ENSCGRG00001014893)	ENSCGRG00001009407	Glycam1 (ENSCGRG00001016454) #15	Ppp1r1a (ENSCGRG00001013456) #16	Pde1b (ENSCGRG00001017137) #17	Nckap1l (ENSCGRG00001014386) #18	Gtsf2 (ENSCGRG00001016136) #19	Gtsf1 (ENSCGRG00001013814) #20	Itga5 (ENSCGRG00001017691) #21	Zfp385a (ENSCGRG00001015539) #22	ENSCGRG00001009425 #23	Copz1 (ENSCGRG00001013501) #24	Nfe2 (ENSCGRG00001022465) #25	Hnrnpa1 (ENSCGRG00001013129) #26	Cbx5 (ENSCGRG00001019018) #27	Smug1 (ENSCGRG00001016146) #28	Hoxc4 (ENSCGRG00001013095) #29	Hoxc5 (ENSCGRG00001012661) #30	Hoxc6 (ENSCGRG00001014416) #31	Hoxc8 (ENSCGRG00001014315) #32	Hoxc9 (ENSCGRG00001013912) #33	Hoxc10 (ENSCGRG00001013473) #34	Hoxc11 (ENSCGRG00001013516) #35	Hoxc12 (ENSCGRG00001014493) #36	Hoxc13 (ENSCGRG00001013867) #37
Golden Hamster	MODERN SPECIES	626			Mettl21e (ENSMAUG00000019422)	Ercc5 (ENSMAUG00000019200)	Bivm (ENSMAUG00000017423)	Poglut2 (ENSMAUG00000016318)	Tex30 (ENSMAUG00000016083)	Mettl21c (ENSMAUG00000020274)	Tpp2 (ENSMAUG00000019359)	Ppp1r1a (ENSMAUG00000018584) #16	Pde1b (ENSMAUG00000019170) #17	Nckap1l (ENSMAUG00000018822) #18	ENSMAUG00000017189 #19	Gtsf1 (ENSMAUG00000018746) #20	Itga5 (ENSMAUG00000017255) #21	Zfp385a (ENSMAUG00000015687) #22	ENSMAUG00000010848 #23	ENSMAUG00000020778 #24	Nfe2 (ENSMAUG00000020513) #25	Hnrnpa1 (ENSMAUG00000019184) #26	Cbx5 (ENSMAUG00000018962) #27	Smug1 (ENSMAUG00000018792) #28	Hoxc4 (ENSMAUG00000018883) #29	Hoxc5 (ENSMAUG00000018873) #30	Hoxc6 (ENSMAUG00000018788) #31	Hoxc8 (ENSMAUG00000016196) #32	Hoxc9 (ENSMAUG00000016070) #33	Hoxc10 (ENSMAUG00000015971) #34	Hoxc11 (ENSMAUG00000015214) #35	Hoxc12 (ENSMAUG00000015132) #36	Hoxc13 (ENSMAUG00000014990) #37
Cricetidae_B	ANCESTRAL SPECIES	6									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816.a #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Northern American deer mouse	MODERN SPECIES	12									Glycam1 (ENSPEMG00000007279) #15	Ppp1r1a (ENSPEMG00000000773) #16	Pde1b (ENSPEMG00000018802) #17	Nckap1l (ENSPEMG00000008686) #18	ENSPEMG00000010828 #19	Gtsf1 (ENSPEMG00000009595) #20	Itga5 (ENSPEMG00000000509) #21	Zfp385a (ENSPEMG00000018499) #22	Gpr84 (ENSPEMG00000000618)	Copz1 (ENSPEMG00000009405) #24	Nfe2 (ENSPEMG00000011564) #25	Hnrnpa1 (ENSPEMG00000012402) #26	Cbx5 (ENSPEMG00000015648) #27	Smug1 (ENSPEMG00000027645) #28	ENSPEMG00000028406	Hoxc4 (ENSPEMG00000015515) #29	Hoxc5 (ENSPEMG00000026211) #30	Hoxc6 (ENSPEMG00000026208) #31	Hoxc8 (ENSPEMG00000026440) #32	Hoxc9 (ENSPEMG00000025549) #33	Hoxc10 (ENSPEMG00000013609) #34	Hoxc11 (ENSPEMG00000011561) #35	Hoxc12 (ENSPEMG00000013217) #36
Prairie vole	MODERN SPECIES	2			ENSMOCG00000020011	ENSMOCG00000021250	ENSMOCG00000000524	ENSMOCG00000009952	Glycam1 (ENSMOCG00000020429) #15	Ppp1r1a (ENSMOCG00000002557) #16	Pde1b (ENSMOCG00000008136) #17	ENSMOCG00000014544 #18	ENSMOCG00000011883 #18	Gtsf2 (ENSMOCG00000014770) #19	Gtsf1 (ENSMOCG00000018889) #20	ENSMOCG00000010096	Itga5 (ENSMOCG00000021919) #21	Zfp385a (ENSMOCG00000006959) #22	ENSMOCG00000011736 #23	Copz1 (ENSMOCG00000018095) #24	Nfe2 (ENSMOCG00000019128) #25	Hnrnpa1 (ENSMOCG00000004275) #26	ENSMOCG00000015075 #27	Smug1 (ENSMOCG00000017727) #28	Hoxc4 (ENSMOCG00000014873) #29	Hoxc5 (ENSMOCG00000013422) #30	Hoxc6 (ENSMOCG00000018874) #31	Hoxc8 (ENSMOCG00000016249) #32	Hoxc9 (ENSMOCG00000019623) #33	Hoxc10 (ENSMOCG00000009084) #34	Hoxc11 (ENSMOCG00000010091) #35	Hoxc12 (ENSMOCG00000016790) #36	Hoxc13 (ENSMOCG00000001084) #37
Murinae	ANCESTRAL SPECIES	10								ENSGT00530000067283	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Mus	ANCESTRAL SPECIES	11								ENSGT00530000067283	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000159286.b.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Mus_A	ANCESTRAL SPECIES	13								ENSGT00530000067283	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000159286.b.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Mus_B	ANCESTRAL SPECIES	12								ENSGT00530000067283.a	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000159286.b.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Mouse	MODERN SPECIES	6							Mucl2 (ENSMUSG00000036925)	Mucl1 (ENSMUSG00000060311)	Glycam1 (ENSMUSG00000022491) #15	Ppp1r1a (ENSMUSG00000022490) #16	Pde1b (ENSMUSG00000022489) #17	Nckap1l (ENSMUSG00000022488) #18	Gtsf2 (ENSMUSG00000053508) #19	Gtsf1 (ENSMUSG00000022487) #20	Itga5 (ENSMUSG00000000555) #21	Zfp385a (ENSMUSG00000000552) #22	Gpr84 (ENSMUSG00000063234)	Copz1 (ENSMUSG00000060992) #24	Nfe2 (ENSMUSG00000058794) #25	Hnrnpa1 (ENSMUSG00000046434) #26	Cbx5 (ENSMUSG00000009575) #27	Smug1 (ENSMUSG00000036061) #28	Hoxc4 (ENSMUSG00000075394) #29	Hoxc6 (ENSMUSG00000001661) #31	Hoxc8 (ENSMUSG00000001657) #32	Hoxc9 (ENSMUSG00000036139) #33	Hoxc5 (ENSMUSG00000022485) #30	Hoxc10 (ENSMUSG00000022484) #34	Hoxc11 (ENSMUSG00000001656) #35	Hoxc12 (ENSMUSG00000050328) #36	Hoxc13 (ENSMUSG00000001655) #37
Mus_C	ANCESTRAL SPECIES	17									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000159286.b.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Steppe mouse	MODERN SPECIES	2761								ENSMSIG00000011378	Glycam1 (ENSMSIG00000011340) #15	Ppp1r1a (ENSMSIG00000011322) #16	Pde1b (ENSMSIG00000011263) #17	Nckap1l (ENSMSIG00000011126) #18	Gtsf2 (ENSMSIG00000011099) #19	Gtsf1 (ENSMSIG00000010994) #20	Itga5 (ENSMSIG00000010915) #21	ENSMSIG00000010850 #22	Gpr84 (ENSMSIG00000010839)	Copz1 (ENSMSIG00000010825) #24	Nfe2 (ENSMSIG00000010777) #25	Hnrnpa1 (ENSMSIG00000010644) #26	Cbx5 (ENSMSIG00000010608) #27	Smug1 (ENSMSIG00000010575) #28	ENSMSIG00000010566	Hoxc4 (ENSMSIG00000010551) #29	Hoxc5 (ENSMSIG00000010530) #30	Hoxc6 (ENSMSIG00000010510) #31	Hoxc8 (ENSMSIG00000010506) #32	Hoxc9 (ENSMSIG00000010497) #33	Hoxc10 (ENSMSIG00000010480) #34	Hoxc11 (ENSMSIG00000010467) #35	Hoxc12 (ENSMSIG00000010422) #36
spretus	MODERN SPECIES	6									Glycam1 (MGP_SPRETEiJ_G0021277) #15	Ppp1r1a (MGP_SPRETEiJ_G0021276) #16	Pde1b (MGP_SPRETEiJ_G0021275) #17	Nckap1l (MGP_SPRETEiJ_G0021274) #18	Gtsf2 (MGP_SPRETEiJ_G0021273) #19	Gtsf1 (MGP_SPRETEiJ_G0021272) #20	Itga5 (MGP_SPRETEiJ_G0021271) #21	Zfp385a (MGP_SPRETEiJ_G0021270) #22	Gpr84 (MGP_SPRETEiJ_G0021269)	Copz1 (MGP_SPRETEiJ_G0021268) #24	Nfe2 (MGP_SPRETEiJ_G0021267) #25	Hnrnpa1 (MGP_SPRETEiJ_G0021266) #26	MGP_SPRETEiJ_G0021265 #27	Smug1 (MGP_SPRETEiJ_G0021264) #28	Hoxc4 (MGP_SPRETEiJ_G0021263) #29	Hoxc6 (MGP_SPRETEiJ_G0021262) #31	Hoxc8 (MGP_SPRETEiJ_G0021261) #32	Hoxc9 (MGP_SPRETEiJ_G0021260) #33	Hoxc5 (MGP_SPRETEiJ_G0021259) #30	Hoxc10 (MGP_SPRETEiJ_G0021258) #34	Hoxc11 (MGP_SPRETEiJ_G0021257) #35	Hoxc12 (MGP_SPRETEiJ_G0021256) #36	Hoxc13 (MGP_SPRETEiJ_G0021255) #37
Ryukyu mouse	MODERN SPECIES	6									Glycam1 (MGP_CAROLIEiJ_G0020384) #15	Ppp1r1a (MGP_CAROLIEiJ_G0020383) #16	Pde1b (MGP_CAROLIEiJ_G0020382) #17	Nckap1l (MGP_CAROLIEiJ_G0020381) #18	Gtsf2 (MGP_CAROLIEiJ_G0020380) #19	Gtsf1 (MGP_CAROLIEiJ_G0020379) #20	Itga5 (MGP_CAROLIEiJ_G0020378) #21	Zfp385a (MGP_CAROLIEiJ_G0020377) #22	Gpr84 (MGP_CAROLIEiJ_G0020376)	Copz1 (MGP_CAROLIEiJ_G0020375) #24	Nfe2 (MGP_CAROLIEiJ_G0020374) #25	MGP_CAROLIEiJ_G0020373 ##26	Cbx5 (MGP_CAROLIEiJ_G0020372) #27	Smug1 (MGP_CAROLIEiJ_G0020371) #28	Hoxc4 (MGP_CAROLIEiJ_G0020370) #29	Hoxc6 (MGP_CAROLIEiJ_G0020369) #31	Hoxc8 (MGP_CAROLIEiJ_G0020368) #32	Hoxc9 (MGP_CAROLIEiJ_G0020367) #33	Hoxc5 (MGP_CAROLIEiJ_G0020366) #30	Hoxc10 (MGP_CAROLIEiJ_G0020365) #34	Hoxc11 (MGP_CAROLIEiJ_G0020364) #35	Hoxc12 (MGP_CAROLIEiJ_G0020363) #36	Hoxc13 (MGP_CAROLIEiJ_G0020362) #37
Shrew mouse	MODERN SPECIES	8									Glycam1 (MGP_PahariEiJ_G0020383) #15	Ppp1r1a (MGP_PahariEiJ_G0020382) #16	Pde1b (MGP_PahariEiJ_G0020381) #17	Nckap1l (MGP_PahariEiJ_G0020380) #18	Gtsf2 (MGP_PahariEiJ_G0020379) #19	Gtsf1 (MGP_PahariEiJ_G0020378) #20	Itga5 (MGP_PahariEiJ_G0020377) #21	Zfp385a (MGP_PahariEiJ_G0020376) #22	Gpr84 (MGP_PahariEiJ_G0020375)	Copz1 (MGP_PahariEiJ_G0020374) #24	Nfe2 (MGP_PahariEiJ_G0020373) #25	MGP_PahariEiJ_G0020372 ##26	Cbx5 (MGP_PahariEiJ_G0020371) #27	Smug1 (MGP_PahariEiJ_G0020370) #28	Hoxc4 (MGP_PahariEiJ_G0020369) #29	Hoxc6 (MGP_PahariEiJ_G0020368) #31	Hoxc8 (MGP_PahariEiJ_G0020367) #32	Hoxc9 (MGP_PahariEiJ_G0020366) #33	Hoxc5 (MGP_PahariEiJ_G0020365) #30	Hoxc10 (MGP_PahariEiJ_G0020364) #34	Hoxc11 (MGP_PahariEiJ_G0020363) #35	Hoxc12 (MGP_PahariEiJ_G0020362) #36	Hoxc13 (MGP_PahariEiJ_G0020361) #37
Rat	MODERN SPECIES	17					Spt1 (ENSRNOG00000066132)	ENSRNOG00000067257	LOC102555445 (ENSRNOG00000064464)	ENSRNOG00000071048	Glycam1 (ENSRNOG00000036826) #15	Ppp1r1a (ENSRNOG00000036827) #16	Pde1b (ENSRNOG00000036828) #17	Nckap1l (ENSRNOG00000036829) #18	Gtsf2 (ENSRNOG00000036830) #19	Gtsf1 (ENSRNOG00000036831) #20	Itga5 (ENSRNOG00000057451) #21	Zfp385a (ENSRNOG00000036833) #22	Gpr84 (ENSRNOG00000036834) #23	Copz1 (ENSRNOG00000036835) #24	AABR07058937.1 (ENSRNOG00000036836)	Nfe2 (ENSRNOG00000036837) #25	Hnrnpa1 (ENSRNOG00000036839) #26	Cbx5 (ENSRNOG00000036841) #27	Smug1 (ENSRNOG00000036842) #28	Hoxc4 (ENSRNOG00000016613) #29	Hoxc5 (ENSRNOG00000016598) #30	Hoxc6 (ENSRNOG00000063956) #31	Hoxc8 (ENSRNOG00000028619) #32	Hoxc9 (ENSRNOG00000016199) #33	Hoxc10 (ENSRNOG00000016149) #34	Hoxc11 (ENSRNOG00000016141) #35	Hoxc12 (ENSRNOG00000016116) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	441										Ppp1r1a (ENSNGAG00000023027) #16	Pde1b (ENSNGAG00000020387) #17	Nckap1l (ENSNGAG00000011702) #18	Gtsf2 (ENSNGAG00000008752) #19	Gtsf1 (ENSNGAG00000014213) #20	Itga5 (ENSNGAG00000013929) #21	Zfp385a (ENSNGAG00000007963) #22	ENSNGAG00000004911 #23	Copz1 (ENSNGAG00000000660) #24	Nfe2 (ENSNGAG00000018088) #25	Hnrnpa1 (ENSNGAG00000017304) #26	Cbx5 (ENSNGAG00000016802) #27	Smug1 (ENSNGAG00000019663) #28	Hoxc4 (ENSNGAG00000016300) #29	Hoxc5 (ENSNGAG00000015707) #30	Hoxc6 (ENSNGAG00000013313) #31	Hoxc8 (ENSNGAG00000012817) #32	Hoxc9 (ENSNGAG00000012023) #33	Hoxc10 (ENSNGAG00000022718) #34	Hoxc11 (ENSNGAG00000022627) #35	Hoxc12 (ENSNGAG00000022515) #36	Hoxc13 (ENSNGAG00000022328) #37
Lesser Egyptian jerboa	MODERN SPECIES	42	Or6c2b (ENSJJAG00000023970)	ENSJJAG00000017295	Or10p1 (ENSJJAG00000001285)	ENSJJAG00000024368	Or6c65 (ENSJJAG00000010883)	Neurod4 (ENSJJAG00000001645) #13	Tespa1 (ENSJJAG00000017390) #14	Glycam1 (ENSJJAG00000016549) #15	ENSJJAG00000022930 #16	Pde1b (ENSJJAG00000015140) #17	ENSJJAG00000011759 #18	ENSJJAG00000016097 #18	Gtsf2 (ENSJJAG00000016320) #19	ENSJJAG00000003323 #20	Itga5 (ENSJJAG00000013501) #21	Zfp385a (ENSJJAG00000021761) #22	ENSJJAG00000001613 #23	Copz1 (ENSJJAG00000021645) #24	Nfe2 (ENSJJAG00000011311) #25	Hnrnpa1 (ENSJJAG00000024047) #26	Cbx5 (ENSJJAG00000016164) #27	Smug1 (ENSJJAG00000022700) #28	Hoxc5 (ENSJJAG00000020509) #30	Hoxc6 (ENSJJAG00000021603) #31	Hoxc4 (ENSJJAG00000017548) #29	Hoxc8 (ENSJJAG00000011647) #32	Hoxc9 (ENSJJAG00000020953) #33	Hoxc10 (ENSJJAG00000011018) #34	Hoxc11 (ENSJJAG00000007017) #35	Hoxc12 (ENSJJAG00000024305) #36	Hoxc13 (ENSJJAG00000023584) #37
Kangaroo rat	MODERN SPECIES	474										Ppp1r1a (ENSDORG00000002128) #16	Pde1b (ENSDORG00000002126) #17	Nckap1l (ENSDORG00000002123) #18	Gtsf2 (ENSDORG00000026087) #19	Gtsf1 (ENSDORG00000003228) #20	Itga5 (ENSDORG00000008261) #21	Zfp385a (ENSDORG00000027646) #22	ENSDORG00000010631 #23	Copz1 (ENSDORG00000010630) #24	Nfe2 (ENSDORG00000010629) #25	ENSDORG00000027821	Cbx5 (ENSDORG00000010625) #27	Smug1 (ENSDORG00000024701) #28	Hoxc5 (ENSDORG00000006999) #30	Hoxc6 (ENSDORG00000027256) #31	Hoxc4 (ENSDORG00000007001) #29	Hoxc8 (ENSDORG00000023838) #32	Hoxc9 (ENSDORG00000028578) #33	Hoxc10 (ENSDORG00000006992) #34	Hoxc11 (ENSDORG00000006990) #35	Hoxc12 (ENSDORG00000026466) #36	Hoxc13 (ENSDORG00000023942) #37
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000156832	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k.f	ENSGT01100000263494.a.a.a.a.a.c.a.c #8	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000050527 #7	ENSHGLG00000038653 #7	ENSHGLG00000019941 #11	ENSHGLG00000039359 #8	ENSHGLG00000019745 #13	TESPA1 (ENSHGLG00000000168) #14	ENSHGLG00000044580	ENSHGLG00000047786	ENSHGLG00000032715 #15	PPP1R1A (ENSHGLG00000003378) #16	ENSHGLG00000003015 #17	NCKAP1L (ENSHGLG00000003165) #18	ENSHGLG00000002798 #19	ENSHGLG00000002436 #20	ITGA5 (ENSHGLG00000002106) #21	ZNF385A (ENSHGLG00000001612) #22	GPR84 (ENSHGLG00000037069) #23	COPZ1 (ENSHGLG00000004132) #24	NFE2 (ENSHGLG00000045831) #25	ENSHGLG00000003139	CBX5 (ENSHGLG00000046659) #27	ENSHGLG00000041830 #28	HOXC4 (ENSHGLG00000002699) #29	HOXC5 (ENSHGLG00000002550) #30	ENSHGLG00000046696 #31	HOXC8 (ENSHGLG00000050680) #32	HOXC9 (ENSHGLG00000002316) #33	HOXC10 (ENSHGLG00000002263) #34	HOXC11 (ENSHGLG00000002244) #35	HOXC12 (ENSHGLG00000002214) #36	HOXC13 (ENSHGLG00000001849) #37
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263561.A.k.f	ENSGT01100000263561.A.l	ENSGT01100000263494.a.a.a.a.a.c.a.c #8	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Guinea pig	MODERN SPECIES	9	ENSCPOG00000035128	ENSCPOG00000023585 ##7	ENSCPOG00000027443 #8	OR9K2 (ENSCPOG00000034183) #7	ENSCPOG00000021354 #12	ENSCPOG00000033741	ENSCPOG00000026268 #8	NEUROD4 (ENSCPOG00000002913) #13	TESPA1 (ENSCPOG00000002912) #14	PPP1R1A (ENSCPOG00000015100) #16	PDE1B (ENSCPOG00000015102) #17	NCKAP1L (ENSCPOG00000008748) #18	ENSCPOG00000023851 #19	GTSF1 (ENSCPOG00000008743) #20	ITGA5 (ENSCPOG00000007748) #21	ZNF385A (ENSCPOG00000023870) #22	GPR84 (ENSCPOG00000020750) #23	COPZ1 (ENSCPOG00000007740) #24	NFE2 (ENSCPOG00000030518) #25	HNRNPA1 (ENSCPOG00000020972) #26	CBX5 (ENSCPOG00000038461) #27	SMUG1 (ENSCPOG00000034157) #28	HOXC4 (ENSCPOG00000035649) #29	HOXC5 (ENSCPOG00000009447) #30	HOXC6 (ENSCPOG00000032302) #31	HOXC8 (ENSCPOG00000039628) #32	HOXC10 (ENSCPOG00000009442) #34	HOXC11 (ENSCPOG00000033525) #35	HOXC12 (ENSCPOG00000026314) #36	HOXC13 (ENSCPOG00000020390) #37	CALCOCO1 (ENSCPOG00000021587)
Hystricomorpha_b	ANCESTRAL SPECIES	53	ENSGT01090000260011.A.d.b.a.b.a.a	ENSGT01090000260011.A.d.a.b.b	ENSGT01090000260011.A.d.a.b.a.a	ENSGT01090000260006.B	ENSGT01090000260006.D.a.b.f	ENSGT01090000260011.A.d.b.a.a.h	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.b ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Degu	MODERN SPECIES	134	ENSODEG00000014059	ENSODEG00000020278	PTCHD3 (ENSODEG00000014626)	OR9K2 (ENSODEG00000014841) #7	ENSODEG00000013814	ENSODEG00000015024	NEUROD4 (ENSODEG00000020179) #13	TESPA1 (ENSODEG00000014898) #14	ENSODEG00000013533	PPP1R1A (ENSODEG00000013950) #16	PDE1B (ENSODEG00000013509) #17	NCKAP1L (ENSODEG00000015445) #18	ENSODEG00000013228 #19	GTSF1 (ENSODEG00000014220) #20	ITGA5 (ENSODEG00000014190) #21	ZNF385A (ENSODEG00000013971) #22	GPR84 (ENSODEG00000020196) #23	COPZ1 (ENSODEG00000013855) #24	NFE2 (ENSODEG00000014004) #25	ENSODEG00000014815 ##26	ENSODEG00000013220 #27	SMUG1 (ENSODEG00000014942) #28	HOXC5 (ENSODEG00000014282) #30	HOXC6 (ENSODEG00000014430) #31	HOXC4 (ENSODEG00000013631) #29	HOXC8 (ENSODEG00000014014) #32	HOXC9 (ENSODEG00000013150) #33	HOXC10 (ENSODEG00000012845) #34	HOXC11 (ENSODEG00000013494) #35	HOXC12 (ENSODEG00000013405) #36	HOXC13 (ENSODEG00000013741) #37
Long-tailed chinchilla	MODERN SPECIES	165	ENSCLAG00000009128	ENSCLAG00000007557	ENSCLAG00000017682	ENSCLAG00000017794	ENSCLAG00000017840	ENSCLAG00000017887 ##7	ENSCLAG00000017693 #11	NEUROD4 (ENSCLAG00000008846) #13	TESPA1 (ENSCLAG00000010955) #14	PPP1R1A (ENSCLAG00000008320) #16	PDE1B (ENSCLAG00000012001) #17	NCKAP1L (ENSCLAG00000012783) #18	ENSCLAG00000008579 #19	GTSF1 (ENSCLAG00000012811) #20	ITGA5 (ENSCLAG00000012598) #21	ZNF385A (ENSCLAG00000012440) #22	ENSCLAG00000009971	COPZ1 (ENSCLAG00000009623) #24	NFE2 (ENSCLAG00000008922) #25	ENSCLAG00000011502 ##26	CBX5 (ENSCLAG00000014138) #27	SMUG1 (ENSCLAG00000009996) #28	HOXC4 (ENSCLAG00000009713) #29	HOXC5 (ENSCLAG00000007510) #30	HOXC6 (ENSCLAG00000009220) #31	HOXC8 (ENSCLAG00000008936) #32	HOXC9 (ENSCLAG00000008460) #33	HOXC10 (ENSCLAG00000010877) #34	HOXC11 (ENSCLAG00000010432) #35	HOXC12 (ENSCLAG00000012849) #36	HOXC13 (ENSCLAG00000012400) #37
Sciuridae	ANCESTRAL SPECIES	15	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.u #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816 #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.z ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Marmotini	ANCESTRAL SPECIES	19	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a.u.b #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.a.u.a #7	ENSGT00940000160217 #13	ENSGT00940000160763.c.b #14	ENSGT00940000160763.c.a #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816.f #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.z ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Marmotini_b	ANCESTRAL SPECIES	11									ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000163816.f #19	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.z ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Squirrel	MODERN SPECIES	112										PPP1R1A (ENSSTOG00000008155) #16	PDE1B (ENSSTOG00000008136) #17	NCKAP1L (ENSSTOG00000027248) #18	ENSSTOG00000030158 #19	GTSF1 (ENSSTOG00000025170) #20	ITGA5 (ENSSTOG00000008042) #21	ZNF385A (ENSSTOG00000023730) #22	GPR84 (ENSSTOG00000014678) #23	COPZ1 (ENSSTOG00000021313) #24	NFE2 (ENSSTOG00000012435) #25	ENSSTOG00000006551 ##26	CBX5 (ENSSTOG00000014668) #27	SMUG1 (ENSSTOG00000004542) #28	HOXC4 (ENSSTOG00000020156) #29	HOXC5 (ENSSTOG00000016336) #30	HOXC6 (ENSSTOG00000016337) #31	HOXC8 (ENSSTOG00000012551) #32	HOXC9 (ENSSTOG00000012548) #33	HOXC10 (ENSSTOG00000012545) #34	HOXC11 (ENSSTOG00000028958) #35	HOXC12 (ENSSTOG00000019478) #36	CALCOCO1 (ENSSTOG00000007150)
Arctic ground squirrel	MODERN SPECIES	202									ENSUPAG00010020301 #15	ENSUPAG00010020311 #16	PDE1B (ENSUPAG00010020332) #17	NCKAP1L (ENSUPAG00010020355) #18	ENSUPAG00010020372 #19	GTSF1 (ENSUPAG00010020381) #20	ITGA5 (ENSUPAG00010020413) #21	ZNF385A (ENSUPAG00010020449) #22	ENSUPAG00010020470	COPZ1 (ENSUPAG00010020473) #24	NFE2 (ENSUPAG00010020483) #25	ENSUPAG00010020486 ##26	CBX5 (ENSUPAG00010020504) #27	SMUG1 (ENSUPAG00010020511) #28	HOXC4 (ENSUPAG00010020515) #29	HOXC5 (ENSUPAG00010020519) #30	HOXC6 (ENSUPAG00010020523) #31	HOXC8 (ENSUPAG00010020527) #32	HOXC9 (ENSUPAG00010020530) #33	HOXC10 (ENSUPAG00010020535) #34	HOXC11 (ENSUPAG00010020543) #35	HOXC12 (ENSUPAG00010020565) #36	HOXC13 (ENSUPAG00010020570) #37
Alpin marmot	MODERN SPECIES	34	ENSMMMG00000004057 #7	ENSMMMG00000004050 #11	ENSMMMG00000004047 #12	ENSMMMG00000004040 #7	ENSMMMG00000004033	NEUROD4 (ENSMMMG00000004027) #13	ENSMMMG00000004016 #14	ENSMMMG00000004009 #14	ENSMMMG00000004003	ENSMMMG00000003992 #15	ENSMMMG00000003982 #16	PDE1B (ENSMMMG00000003896) #17	NCKAP1L (ENSMMMG00000003866) #18	ENSMMMG00000003844 #19	ITGA5 (ENSMMMG00000003779) #21	ZNF385A (ENSMMMG00000003744) #22	ENSMMMG00000003736	COPZ1 (ENSMMMG00000003722) #24	NFE2 (ENSMMMG00000003708) #25	ENSMMMG00000003625 ##26	CBX5 (ENSMMMG00000003604) #27	SMUG1 (ENSMMMG00000003585) #28	HOXC4 (ENSMMMG00000003571) #29	HOXC5 (ENSMMMG00000003567) #30	HOXC6 (ENSMMMG00000003562) #31	HOXC8 (ENSMMMG00000003555) #32	HOXC10 (ENSMMMG00000003541) #34	HOXC11 (ENSMMMG00000003528) #35	HOXC12 (ENSMMMG00000003500) #36	ENSMMMG00000003492	CALCOCO1 (ENSMMMG00000003404)
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005001511	OR10A7 (ENSSVLG00005001498)	ENSSVLG00005001486 #8	ENSSVLG00005001475 #7	ENSSVLG00005001465 #12	ENSSVLG00005001453 #12	ENSSVLG00005001442 #11	NEUROD4 (ENSSVLG00005001431) #13	TESPA1 (ENSSVLG00005001405) #14	PPP1R1A (ENSSVLG00005001371) #16	PDE1B (ENSSVLG00005001330) #17	ENSSVLG00005001287 #19	NCKAP1L (ENSSVLG00005001199) #18	GTSF1 (ENSSVLG00005001091) #20	ITGA5 (ENSSVLG00005001034) #21	ZNF385A (ENSSVLG00005000920) #22	GPR84 (ENSSVLG00005000857) #23	COPZ1 (ENSSVLG00005000750) #24	NFE2 (ENSSVLG00005000622) #25	ENSSVLG00005000496 #26	CBX5 (ENSSVLG00005000307) #27	SMUG1 (ENSSVLG00005000267) #28	HOXC4 (ENSSVLG00005000207) #29	HOXC5 (ENSSVLG00005000186) #30	HOXC6 (ENSSVLG00005025017) #31	HOXC8 (ENSSVLG00005024998) #32	HOXC9 (ENSSVLG00005024979) #33	HOXC10 (ENSSVLG00005024954) #34	HOXC13 (ENSSVLG00005024880) #37	CALCOCO1 (ENSSVLG00005024843)	ENSSVLG00005024802
Lagomorpha	ANCESTRAL SPECIES	30	ENSGT01090000260011.A.d.b.a.a.h	ENSGT01090000260006.D.a.b	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.a #8	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00950000183025.b.b	ENSGT00940000157981.b
Rabbit	MODERN SPECIES	15	ENSOCUG00000025137	ENSOCUG00000039330	ENSOCUG00000039158	ENSOCUG00000017778	ENSOCUG00000025348 #8	OR9K2 (ENSOCUG00000027950) #7	ENSOCUG00000002772 #11	NEUROD4 (ENSOCUG00000005595) #13	TESPA1 (ENSOCUG00000005603) #14	ENSOCUG00000036930	ENSOCUG00000013555 #16	PDE1B (ENSOCUG00000038415) #17	GTSF1 (ENSOCUG00000024495) #20	NCKAP1L (ENSOCUG00000013517) #18	ITGA5 (ENSOCUG00000013369) #21	ZNF385A (ENSOCUG00000010747) #22	ENSOCUG00000010753	COPZ1 (ENSOCUG00000013364) #24	NFE2 (ENSOCUG00000022954) #25	ENSOCUG00000013350 ##26	CBX5 (ENSOCUG00000013345) #27	SMUG1 (ENSOCUG00000021131) #28	HOXC4 (ENSOCUG00000015516) #29	HOXC6 (ENSOCUG00000004743) #31	HOXC8 (ENSOCUG00000004741) #32	HOXC9 (ENSOCUG00000001160) #33	HOXC10 (ENSOCUG00000015176) #34	HOXC11 (ENSOCUG00000001159) #35	HOXC12 (ENSOCUG00000001157) #36	CALCOCO1 (ENSOCUG00000008943)	ENSOCUG00000008933
Pika	MODERN SPECIES	9156															ITGA5 (ENSOPRG00000015699) #21	ZNF385A (ENSOPRG00000015687) #22	COPZ1 (ENSOPRG00000015673) #24
Primates	ANCESTRAL SPECIES	6	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT01090000260006.C	ENSGT01090000260006.E.b	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Mouse lemur	MODERN SPECIES	29	ENSMICG00000046336	TUBA8 (ENSMICG00000017239)	OR6C75 (ENSMICG00000047731)	ENSMICG00000031233	ENSMICG00000010469	ENSMICG00000042889	ENSMICG00000026575	ENSMICG00000017826 #7	ENSMICG00000008320 #11	TESPA1 (ENSMICG00000038700) #14	PPP1R1A (ENSMICG00000008492) #16	PDE1B (ENSMICG00000043971) #17	NCKAP1L (ENSMICG00000008453) #18	GTSF1 (ENSMICG00000008444) #20	ITGA5 (ENSMICG00000008420) #21	ZNF385A (ENSMICG00000037401) #22	COPZ1 (ENSMICG00000008401) #24	NFE2 (ENSMICG00000031522) #25	HNRNPA1 (ENSMICG00000032477) #26	CBX5 (ENSMICG00000041561) #27	ENSMICG00000026511	ENSMICG00000034005 #28	HOXC4 (ENSMICG00000041983) #29	HOXC5 (ENSMICG00000042167) #30	HOXC6 (ENSMICG00000046781) #31	HOXC8 (ENSMICG00000046543) #32	HOXC9 (ENSMICG00000011714) #33	HOXC10 (ENSMICG00000027410) #34	HOXC11 (ENSMICG00000011710) #35	HOXC12 (ENSMICG00000011709) #36	HOXC13 (ENSMICG00000042545) #37
Lemuriformes_a	ANCESTRAL SPECIES	8								ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Coquerels sifaka	MODERN SPECIES	91	RDH5 (ENSPCOG00000021400)	BLOC1S1 (ENSPCOG00000027451)	ITGA7 (ENSPCOG00000025443)	METTL7B (ENSPCOG00000021279)	ENSPCOG00000000561	ENSPCOG00000027805	TESPA1 (ENSPCOG00000015648) #14	ENSPCOG00000026011	ENSPCOG00000026189	ENSPCOG00000026780	PPP1R1A (ENSPCOG00000024719) #16	PDE1B (ENSPCOG00000019010) #17	NCKAP1L (ENSPCOG00000021337) #18	GTSF1 (ENSPCOG00000016907) #20	ITGA5 (ENSPCOG00000014049) #21	ZNF385A (ENSPCOG00000014689) #22	COPZ1 (ENSPCOG00000016263) #24	NFE2 (ENSPCOG00000018360) #25	ENSPCOG00000015986 #26	CBX5 (ENSPCOG00000023520) #27	ENSPCOG00000016093 #28	HOXC5 (ENSPCOG00000016116) #30	HOXC4 (ENSPCOG00000027216) #29	HOXC6 (ENSPCOG00000025765) #31	HOXC8 (ENSPCOG00000014957) #32	HOXC9 (ENSPCOG00000027236) #33	HOXC10 (ENSPCOG00000017406) #34	HOXC11 (ENSPCOG00000015117) #35	HOXC12 (ENSPCOG00000024756) #36	HOXC13 (ENSPCOG00000027689) #37	CALCOCO1 (ENSPCOG00000028080)
Greater bamboo lemur	MODERN SPECIES	326										ENSPSMG00000016621 #15	PPP1R1A (ENSPSMG00000016640) #16	PDE1B (ENSPSMG00000016736) #17	NCKAP1L (ENSPSMG00000016777) #18	GTSF1 (ENSPSMG00000016801) #20	ITGA5 (ENSPSMG00000016873) #21	ZNF385A (ENSPSMG00000016918) #22	GPR84 (ENSPSMG00000016926) #23	COPZ1 (ENSPSMG00000016973) #24	NFE2 (ENSPSMG00000016977) #25	HNRNPA1 (ENSPSMG00000016993) #26	CBX5 (ENSPSMG00000017008) #27	SMUG1 (ENSPSMG00000017015) #28	HOXC4 (ENSPSMG00000017025) #29	HOXC5 (ENSPSMG00000017033) #30	HOXC6 (ENSPSMG00000017043) #31	HOXC8 (ENSPSMG00000017050) #32	HOXC9 (ENSPSMG00000017055) #33	HOXC10 (ENSPSMG00000017068) #34	HOXC11 (ENSPSMG00000017076) #35	HOXC12 (ENSPSMG00000017098) #36	HOXC13 (ENSPSMG00000017107) #37
Bushbaby	MODERN SPECIES	158	ENSOGAG00000025528	OR6C74 (ENSOGAG00000032185)	ENSOGAG00000025682	OR10A7 (ENSOGAG00000008342)	ENSOGAG00000025988	ENSOGAG00000033046 ##7	OR9K2 (ENSOGAG00000009673) #7	ENSOGAG00000030477 #11	NEUROD4 (ENSOGAG00000009685) #13	TESPA1 (ENSOGAG00000009688) #14	PPP1R1A (ENSOGAG00000017231) #16	PDE1B (ENSOGAG00000017229) #17	NCKAP1L (ENSOGAG00000017228) #18	GTSF1 (ENSOGAG00000017227) #20	ITGA5 (ENSOGAG00000017225) #21	ZNF385A (ENSOGAG00000009483) #22	GPR84 (ENSOGAG00000017224) #23	COPZ1 (ENSOGAG00000013468) #24	NFE2 (ENSOGAG00000006523) #25	ENSOGAG00000029707 ##26	CBX5 (ENSOGAG00000013464) #27	ENSOGAG00000003623 #28	HOXC4 (ENSOGAG00000033004) #29	HOXC5 (ENSOGAG00000003622) #30	HOXC6 (ENSOGAG00000003621) #31	HOXC8 (ENSOGAG00000003619) #32	HOXC9 (ENSOGAG00000003616) #33	HOXC10 (ENSOGAG00000003615) #34	HOXC11 (ENSOGAG00000029804) #35	HOXC12 (ENSOGAG00000025383) #36	HOXC13 (ENSOGAG00000030391) #37
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT01090000260006.D.a.b	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01090000260006.D.a.a	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Tarsier	MODERN SPECIES	4866																ZNF385A (ENSTSYG00000029148) #22	COPZ1 (ENSTSYG00000014350) #24	NFE2 (ENSTSYG00000011307) #25	HNRNPA1 (ENSTSYG00000012949) #26	CBX5 (ENSTSYG00000003344) #27
Simiiformes	ANCESTRAL SPECIES	4	ENSGT01090000260006.D.a.a	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT01090000260011.A.d.b.a.a.h	ENSGT01090000260006.D.a.b	ENSGT01090000260006.D.a.a	ENSGT01090000260006.C	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.y.b.a.b.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897.k #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000162340	ENSGT01100000263561.A.l	ENSGT01090000260011.A.c.a.a.a.b	ENSGT01090000260011.A.c.a.a.b	ENSGT01090000260011.A.d.a.a	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.z ##26	ENSGT00940000158801 #27	ENSGT00390000004897.k #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Marmoset	MODERN SPECIES	21	OR6C70 (ENSCJAG00000075788)	OR6C3 (ENSCJAG00000022585)	OR6C1 (ENSCJAG00000022584)	ENSCJAG00000074199	OR9K2 (ENSCJAG00000022576) #7	NEUROD4 (ENSCJAG00000019123) #13	TESPA1 (ENSCJAG00000019103) #14	ENSCJAG00000085842	DCD (ENSCJAG00000019092)	LACRT (ENSCJAG00000019085)	ENSCJAG00000040329 #16	PDE1B (ENSCJAG00000019038) #17	NCKAP1L (ENSCJAG00000018974) #18	GTSF1 (ENSCJAG00000018968) #20	ITGA5 (ENSCJAG00000018921) #21	ZNF385A (ENSCJAG00000018897) #22	GPR84 (ENSCJAG00000018894) #23	COPZ1 (ENSCJAG00000018887) #24	NFE2 (ENSCJAG00000018880) #25	ENSCJAG00000018864 ##26	CBX5 (ENSCJAG00000018847) #27	ENSCJAG00000078029	ENSCJAG00000044092 #28	HOXC4 (ENSCJAG00000078505) #29	HOXC5 (ENSCJAG00000044096) #30	HOXC6 (ENSCJAG00000043282) #31	HOXC10 (ENSCJAG00000018811) #34	HOXC9 (ENSCJAG00000018819) #33	HOXC11 (ENSCJAG00000018808) #35	HOXC12 (ENSCJAG00000018806) #36	HOXC13 (ENSCJAG00000044250) #37
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000156832	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00940000162340	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000159286.b.b	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a.z ##26	ENSGT00940000158801 #27	ENSGT00390000004897.k #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Capuchin	MODERN SPECIES	285	OR6C2 (ENSCCAG00000019750)	OR6C3 (ENSCCAG00000018653)	OR10A7 (ENSCCAG00000008524)	ENSCCAG00000029232 #11	NEUROD4 (ENSCCAG00000015070) #13	TESPA1 (ENSCCAG00000023429) #14	ENSCCAG00000025420	ENSCCAG00000021932	DCD (ENSCCAG00000009193)	LACRT (ENSCCAG00000020335)	PPP1R1A (ENSCCAG00000027579) #16	PDE1B (ENSCCAG00000034020) #17	NCKAP1L (ENSCCAG00000032586) #18	GTSF1 (ENSCCAG00000032808) #20	ITGA5 (ENSCCAG00000021214) #21	ZNF385A (ENSCCAG00000033332) #22	ENSCCAG00000019051	COPZ1 (ENSCCAG00000013641) #24	NFE2 (ENSCCAG00000027905) #25	ENSCCAG00000033451 ##26	CBX5 (ENSCCAG00000024410) #27	ENSCCAG00000035935 #28	HOXC4 (ENSCCAG00000030761) #29	HOXC5 (ENSCCAG00000035017) #30	HOXC6 (ENSCCAG00000028505) #31	HOXC8 (ENSCCAG00000035957) #32	HOXC9 (ENSCCAG00000004390) #33	HOXC10 (ENSCCAG00000037870) #34	HOXC11 (ENSCCAG00000020099) #35	HOXC12 (ENSCCAG00000035755) #36	HOXC13 (ENSCCAG00000023554) #37
Bolivian squirrel monkey	MODERN SPECIES	153	RDH5 (ENSSBOG00000022798)	ITGA7 (ENSSBOG00000031271)	METTL7B (ENSSBOG00000013267)	ENSSBOG00000027069	ENSSBOG00000024863 #11	NEUROD4 (ENSSBOG00000009117) #13	TESPA1 (ENSSBOG00000029292) #14	ENSSBOG00000021049	DCD (ENSSBOG00000022167)	LACRT (ENSSBOG00000030289)	PPP1R1A (ENSSBOG00000031688) #16	PDE1B (ENSSBOG00000023835) #17	NCKAP1L (ENSSBOG00000021954) #18	GTSF1 (ENSSBOG00000029460) #20	ITGA5 (ENSSBOG00000019449) #21	ZNF385A (ENSSBOG00000030395) #22	COPZ1 (ENSSBOG00000027656) #24	NFE2 (ENSSBOG00000031941) #25	ENSSBOG00000020034 ##26	CBX5 (ENSSBOG00000026151) #27	ENSSBOG00000011270 #28	HOXC5 (ENSSBOG00000032933) #30	HOXC6 (ENSSBOG00000030381) #31	HOXC4 (ENSSBOG00000029739) #29	HOXC8 (ENSSBOG00000023828) #32	HOXC9 (ENSSBOG00000027042) #33	HOXC10 (ENSSBOG00000034914) #34	HOXC11 (ENSSBOG00000031215) #35	HOXC12 (ENSSBOG00000028822) #36	CALCOCO1 (ENSSBOG00000033966)	ENSSBOG00000012565
Mas night monkey	MODERN SPECIES	1031	OR6C74 (ENSANAG00000001962)	OR9K2 (ENSANAG00000020116) #7	ENSANAG00000023011	NEUROD4 (ENSANAG00000004700) #13	TESPA1 (ENSANAG00000037498) #14	MUCL1 (ENSANAG00000026232)	ENSANAG00000030917	DCD (ENSANAG00000035073)	LACRT (ENSANAG00000021062)	PPP1R1A (ENSANAG00000036632) #16	PDE1B (ENSANAG00000034831) #17	NCKAP1L (ENSANAG00000025148) #18	ENSANAG00000023191	GTSF1 (ENSANAG00000024529) #20	ITGA5 (ENSANAG00000036479) #21	ZNF385A (ENSANAG00000001893) #22	GPR84 (ENSANAG00000004247) #23	ENSANAG00000025073	COPZ1 (ENSANAG00000031944) #24	NFE2 (ENSANAG00000025350) #25	ENSANAG00000023645 ##26	CBX5 (ENSANAG00000023641) #27	SMUG1 (ENSANAG00000024467) #28	HOXC5 (ENSANAG00000034479) #30	HOXC6 (ENSANAG00000022530) #31	HOXC8 (ENSANAG00000020854) #32	HOXC9 (ENSANAG00000036543) #33	HOXC4 (ENSANAG00000033194) #29	HOXC10 (ENSANAG00000033259) #34	HOXC11 (ENSANAG00000032883) #35	HOXC12 (ENSANAG00000032833) #36
Catarrhini	ANCESTRAL SPECIES	4	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Hominoidea	ANCESTRAL SPECIES	5	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Hominidae	ANCESTRAL SPECIES	4	ENSGT01090000260006.D.a.a	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT01090000260006.D.a.a	ENSGT01090000260006.E.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Gorilla	MODERN SPECIES	3	OR6C1 (ENSGGOG00000036966)	OR6C6 (ENSGGOG00000039961)	ENSGGOG00000023803	ENSGGOG00000022537	OR9K2 (ENSGGOG00000026435) #7	NEUROD4 (ENSGGOG00000004295) #13	TESPA1 (ENSGGOG00000002425) #14	MUCL1 (ENSGGOG00000016172)	DCD (ENSGGOG00000008392)	LACRT (ENSGGOG00000008386)	PPP1R1A (ENSGGOG00000008380) #16	PDE1B (ENSGGOG00000008372) #17	NCKAP1L (ENSGGOG00000008356) #18	GTSF1 (ENSGGOG00000016063) #20	ITGA5 (ENSGGOG00000000722) #21	ENSGGOG00000002658 #22	GPR84 (ENSGGOG00000002657) #23	COPZ1 (ENSGGOG00000008311) #24	NFE2 (ENSGGOG00000003043) #25	HNRNPA1 (ENSGGOG00000003040) #26	CBX5 (ENSGGOG00000000041) #27	SMUG1 (ENSGGOG00000000039) #28	HOXC4 (ENSGGOG00000037118) #29	HOXC5 (ENSGGOG00000001629) #30	HOXC6 (ENSGGOG00000001628) #31	HOXC8 (ENSGGOG00000006289) #32	HOXC9 (ENSGGOG00000006282) #33	HOXC10 (ENSGGOG00000001105) #34	HOXC11 (ENSGGOG00000026566) #35	HOXC12 (ENSGGOG00000023684) #36	HOXC13 (ENSGGOG00000015765) #37
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT01090000260011.A.d.b.a.a.h	ENSGT01090000260006.D.a.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Pan	ANCESTRAL SPECIES	4	ENSGT01090000260006.D.a.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Chimpanzee	MODERN SPECIES	3	OR6C1 (ENSPTRG00000029744)	OR6C6 (ENSPTRG00000005052)	OR6C74 (ENSPTRG00000005050)	OR10A7 (ENSPTRG00000029743)	OR9K2 (ENSPTRG00000005051) #7	NEUROD4 (ENSPTRG00000045657) #13	TESPA1 (ENSPTRG00000005048) #14	MUCL1 (ENSPTRG00000005047)	DCD (ENSPTRG00000005046)	LACRT (ENSPTRG00000005045)	PPP1R1A (ENSPTRG00000005044) #16	PDE1B (ENSPTRG00000005043) #17	NCKAP1L (ENSPTRG00000005042) #18	GTSF1 (ENSPTRG00000005041) #20	ITGA5 (ENSPTRG00000005040) #21	ZNF385A (ENSPTRG00000005039) #22	GPR84 (ENSPTRG00000005038) #23	COPZ1 (ENSPTRG00000005037) #24	NFE2 (ENSPTRG00000005036) #25	HNRPA1LK1 (ENSPTRG00000049417) #26	CBX5 (ENSPTRG00000005034) #27	SMUG1 (ENSPTRG00000005033) #28	HOXC4 (ENSPTRG00000048069) #29	HOXC5 (ENSPTRG00000052329) #30	HOXC6 (ENSPTRG00000022997) #31	HOXC8 (ENSPTRG00000005030) #32	HOXC9 (ENSPTRG00000005029) #33	HOXC10 (ENSPTRG00000005028) #34	HOXC11 (ENSPTRG00000005027) #35	HOXC12 (ENSPTRG00000005026) #36	HOXC13 (ENSPTRG00000005025) #37
Bonobo	MODERN SPECIES	3	OR6C1 (ENSPPAG00000024987)	OR6C6 (ENSPPAG00000024440)	OR6C74 (ENSPPAG00000025121)	OR10A7 (ENSPPAG00000021764)	OR9K2 (ENSPPAG00000008469) #7	ENSPPAG00000022461 #13	TESPA1 (ENSPPAG00000038042) #14	ENSPPAG00000035518	DCD (ENSPPAG00000040901)	LACRT (ENSPPAG00000043495)	PPP1R1A (ENSPPAG00000030568) #16	ENSPPAG00000000426 #17	NCKAP1L (ENSPPAG00000038716) #18	GTSF1 (ENSPPAG00000028506) #20	ITGA5 (ENSPPAG00000041089) #21	ZNF385A (ENSPPAG00000035416) #22	GPR84 (ENSPPAG00000007711) #23	COPZ1 (ENSPPAG00000034633) #24	NFE2 (ENSPPAG00000025801) #25	ENSPPAG00000018027 #26	CBX5 (ENSPPAG00000028337) #27	SMUG1 (ENSPPAG00000033677) #28	HOXC4 (ENSPPAG00000038534) #29	HOXC5 (ENSPPAG00000033038) #30	HOXC6 (ENSPPAG00000036938) #31	HOXC8 (ENSPPAG00000033394) #32	HOXC9 (ENSPPAG00000035907) #33	HOXC10 (ENSPPAG00000035276) #34	HOXC11 (ENSPPAG00000043277) #35	HOXC12 (ENSPPAG00000029866) #36	HOXC13 (ENSPPAG00000035078) #37
Human	MODERN SPECIES	3	OR6C1 (ENSG00000205330)	OR6C6 (ENSG00000188324)	OR6C74 (ENSG00000197706)	OR10A7 (ENSG00000179919)	OR9K2 (ENSG00000170605) #7	NEUROD4 (ENSG00000123307) #13	TESPA1 (ENSG00000135426) #14	MUCL1 (ENSG00000172551)	DCD (ENSG00000161634)	LACRT (ENSG00000135413)	PPP1R1A (ENSG00000135447) #16	PDE1B (ENSG00000123360) #17	NCKAP1L (ENSG00000123338) #18	GTSF1 (ENSG00000170627) #20	ITGA5 (ENSG00000161638) #21	ZNF385A (ENSG00000161642) #22	GPR84 (ENSG00000139572) #23	COPZ1 (ENSG00000111481) #24	NFE2 (ENSG00000123405) #25	HNRNPA1 (ENSG00000135486) #26	CBX5 (ENSG00000094916) #27	SMUG1 (ENSG00000123415) #28	HOXC5 (ENSG00000172789) #30	HOXC4 (ENSG00000198353) #29	HOXC8 (ENSG00000037965) #32	HOXC9 (ENSG00000180806) #33	HOXC6 (ENSG00000197757) #31	ENSG00000273049	HOXC10 (ENSG00000180818) #34	HOXC11 (ENSG00000123388) #35	HOXC12 (ENSG00000123407) #36
Orangutan	MODERN SPECIES	3	OR6C3 (ENSPPYG00000004617)	OR6C6 (ENSPPYG00000005171)	OR6C74 (ENSPPYG00000033682)	OR10A7 (ENSPPYG00000034794)	OR9K2 (ENSPPYG00000004615) #7	NEUROD4 (ENSPPYG00000004613) #13	TESPA1 (ENSPPYG00000004612) #14	MUCL1 (ENSPPYG00000004611)	DCD (ENSPPYG00000004610)	LACRT (ENSPPYG00000004609)	PPP1R1A (ENSPPYG00000004608) #16	PDE1B (ENSPPYG00000004607) #17	NCKAP1L (ENSPPYG00000004606) #18	GTSF1 (ENSPPYG00000004605) #20	ITGA5 (ENSPPYG00000004604) #21	ZNF385A (ENSPPYG00000004603) #22	GPR84 (ENSPPYG00000004602) #23	COPZ1 (ENSPPYG00000004601) #24	NFE2 (ENSPPYG00000004600) #25	HNRNPA1 (ENSPPYG00000025850) #26	CBX5 (ENSPPYG00000038909) #27	SMUG1 (ENSPPYG00000004598) #28	HOXC4 (ENSPPYG00000004596) #29	HOXC5 (ENSPPYG00000004595) #30	HOXC6 (ENSPPYG00000004594) #31	HOXC8 (ENSPPYG00000004593) #32	HOXC9 (ENSPPYG00000004592) #33	HOXC10 (ENSPPYG00000004591) #34	ENSPPYG00000004590 #35	HOXC12 (ENSPPYG00000004589) #36	HOXC13 (ENSPPYG00000004588) #37
Gibbon	MODERN SPECIES	1	OR2AP1 (ENSNLEG00000029073)	OR6C4 (ENSNLEG00000031901)	OR6C1 (ENSNLEG00000019272)	OR9K2 (ENSNLEG00000019273) #7	NEUROD4 (ENSNLEG00000028480) #13	TESPA1 (ENSNLEG00000017620) #14	MUCL1 (ENSNLEG00000028255)	ENSNLEG00000032441	ENSNLEG00000017623	ENSNLEG00000029310	PPP1R1A (ENSNLEG00000017625) #16	PDE1B (ENSNLEG00000017627) #17	NCKAP1L (ENSNLEG00000017630) #18	GTSF1 (ENSNLEG00000017635) #20	ITGA5 (ENSNLEG00000017637) #21	ZNF385A (ENSNLEG00000017645) #22	GPR84 (ENSNLEG00000017649) #23	COPZ1 (ENSNLEG00000035667) #24	NFE2 (ENSNLEG00000017657) #25	HNRNPA1 (ENSNLEG00000017659) #26	CBX5 (ENSNLEG00000017671) #27	SMUG1 (ENSNLEG00000017673) #28	HOXC4 (ENSNLEG00000017675) #29	HOXC5 (ENSNLEG00000017676) #30	ENSNLEG00000033368 #31	HOXC8 (ENSNLEG00000017677) #32	HOXC9 (ENSNLEG00000017678) #33	HOXC10 (ENSNLEG00000017679) #34	ENSNLEG00000035339 #35	HOXC12 (ENSNLEG00000017683) #36	HOXC13 (ENSNLEG00000017680) #37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000155906.t	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Rhinopithecus	ANCESTRAL SPECIES	4									ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Golden snub-nosed monkey	MODERN SPECIES	1766									DCD (ENSRROG00000032994)	LACRT (ENSRROG00000030592)	PPP1R1A (ENSRROG00000039028) #16	PDE1B (ENSRROG00000041120) #17	NCKAP1L (ENSRROG00000023820) #18	GTSF1 (ENSRROG00000008137) #20	ITGA5 (ENSRROG00000045615) #21	ZNF385A (ENSRROG00000027319) #22	GPR84 (ENSRROG00000025298) #23	COPZ1 (ENSRROG00000029403) #24	NFE2 (ENSRROG00000031892) #25	HNRNPA1 (ENSRROG00000030782) #26	ENSRROG00000040559 #27	ENSRROG00000026794	SMUG1 (ENSRROG00000042549) #28	ENSRROG00000013188	HOXC4 (ENSRROG00000032086) #29	HOXC5 (ENSRROG00000029940) #30	HOXC6 (ENSRROG00000038476) #31	HOXC8 (ENSRROG00000037014) #32	HOXC9 (ENSRROG00000035646) #33	HOXC10 (ENSRROG00000043103) #34	HOXC11 (ENSRROG00000045396) #35
Black snub-nosed monkey	MODERN SPECIES	1517									DCD (ENSRBIG00000043069)	LACRT (ENSRBIG00000038880)	PPP1R1A (ENSRBIG00000041637) #16	PDE1B (ENSRBIG00000000767) #17	NCKAP1L (ENSRBIG00000032548) #18	ENSRBIG00000043438 #20	ITGA5 (ENSRBIG00000033135) #21	ZNF385A (ENSRBIG00000040535) #22	GPR84 (ENSRBIG00000030950) #23	COPZ1 (ENSRBIG00000018812) #24	NFE2 (ENSRBIG00000004765) #25	HNRNPA1 (ENSRBIG00000029387) #26	CBX5 (ENSRBIG00000044828) #27	ENSRBIG00000021086	SMUG1 (ENSRBIG00000029643) #28	HOXC4 (ENSRBIG00000042398) #29	HOXC5 (ENSRBIG00000044630) #30	HOXC6 (ENSRBIG00000041311) #31	HOXC8 (ENSRBIG00000035303) #32	HOXC9 (ENSRBIG00000028081) #33	HOXC10 (ENSRBIG00000029635) #34	HOXC11 (ENSRBIG00000043565) #35	HOXC12 (ENSRBIG00000044976) #36
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000155906.t	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Vervet Monkey	MODERN SPECIES	2	OR6C1 (ENSCSAG00000019263)	ENSCSAG00000019262	OR10A7 (ENSCSAG00000019261)	OR9K2 (ENSCSAG00000019260) #7	ENSCSAG00000005351	TESPA1 (ENSCSAG00000005358) #14	ENSCSAG00000005363	DCD (ENSCSAG00000005367)	LACRT (ENSCSAG00000005375)	ENSCSAG00000005382 #15	PPP1R1A (ENSCSAG00000005385) #16	PDE1B (ENSCSAG00000005388) #17	NCKAP1L (ENSCSAG00000005392) #18	GTSF1 (ENSCSAG00000005394) #20	ITGA5 (ENSCSAG00000005401) #21	ZNF385A (ENSCSAG00000005407) #22	GPR84 (ENSCSAG00000019259) #23	COPZ1 (ENSCSAG00000005421) #24	NFE2 (ENSCSAG00000005427) #25	HNRNPA1 (ENSCSAG00000005436) #26	CBX5 (ENSCSAG00000005440) #27	SMUG1 (ENSCSAG00000005441) #28	HOXC4 (ENSCSAG00000005445) #29	HOXC5 (ENSCSAG00000005447) #30	HOXC6 (ENSCSAG00000005449) #31	HOXC8 (ENSCSAG00000005451) #32	HOXC9 (ENSCSAG00000005453) #33	HOXC10 (ENSCSAG00000005455) #34	HOXC11 (ENSCSAG00000005457) #35	HOXC12 (ENSCSAG00000005459) #36	HOXC13 (ENSCSAG00000005461) #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000155906.t	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.s #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Macaca	ANCESTRAL SPECIES	6	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.s #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897.j #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Pig-tailed macaque	MODERN SPECIES	526	OR6C75 (ENSMNEG00000002544)	OR6C1 (ENSMNEG00000015375)	OR6C74 (ENSMNEG00000022777)	OR10A7 (ENSMNEG00000030756)	OR9K2 (ENSMNEG00000027149) #7	NEUROD4 (ENSMNEG00000019973) #13	TESPA1 (ENSMNEG00000041682) #14	ENSMNEG00000029003	DCD (ENSMNEG00000033561)	LACRT (ENSMNEG00000037733)	PPP1R1A (ENSMNEG00000019110) #16	PDE1B (ENSMNEG00000036202) #17	NCKAP1L (ENSMNEG00000030374) #18	GTSF1 (ENSMNEG00000036779) #20	ITGA5 (ENSMNEG00000036796) #21	ZNF385A (ENSMNEG00000039249) #22	GPR84 (ENSMNEG00000017529) #23	COPZ1 (ENSMNEG00000039565) #24	NFE2 (ENSMNEG00000035082) #25	ENSMNEG00000042992 #26	CBX5 (ENSMNEG00000045439) #27	ENSMNEG00000023733	SMUG1 (ENSMNEG00000042533) #28	HOXC4 (ENSMNEG00000038564) #29	HOXC5 (ENSMNEG00000000036) #30	HOXC6 (ENSMNEG00000033520) #31	HOXC8 (ENSMNEG00000039027) #32	HOXC9 (ENSMNEG00000036510) #33	HOXC10 (ENSMNEG00000039805) #34	HOXC11 (ENSMNEG00000041343) #35	HOXC12 (ENSMNEG00000028886) #36
Macaca_a	ANCESTRAL SPECIES	6	ENSGT01090000260011.A.d.b.b	ENSGT01090000260011.A.d.b.a.a.h	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245407	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.s.b #26	ENSGT00940000158801 #27	ENSGT00390000004897.j #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36	ENSGT00940000161087 #37
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000003915	ENSMFAG00000065221 #11	ENSMFAG00000063829	ENSMFAG00000065363	NEUROD4 (ENSMFAG00000030073) #13	TESPA1 (ENSMFAG00000040218) #14	MUCL1 (ENSMFAG00000051719)	DCD (ENSMFAG00000040810)	LACRT (ENSMFAG00000063533)	PPP1R1A (ENSMFAG00000037982) #16	PDE1B (ENSMFAG00000033293) #17	NCKAP1L (ENSMFAG00000001155) #18	GTSF1 (ENSMFAG00000041178) #20	ENSMFAG00000047951	ITGA5 (ENSMFAG00000036877) #21	ZNF385A (ENSMFAG00000042192) #22	GPR84 (ENSMFAG00000030281) #23	COPZ1 (ENSMFAG00000045686) #24	NFE2 (ENSMFAG00000044203) #25	ENSMFAG00000031561 #26	CBX5 (ENSMFAG00000003762) #27	SMUG1 (ENSMFAG00000038455) #28	HOXC5 (ENSMFAG00000058266) #30	HOXC6 (ENSMFAG00000033368) #31	HOXC8 (ENSMFAG00000002443) #32	HOXC9 (ENSMFAG00000042260) #33	ENSMFAG00000039005 #35	HOXC12 (ENSMFAG00000002263) #36	HOXC13 (ENSMFAG00000062591) #37	ENSMFAG00000043577	CALCOCO1 (ENSMFAG00000002103)
Rhesus	MODERN SPECIES	2	OR6C75 (ENSMMUG00000049487)	OR6C1 (ENSMMUG00000063910)	OR6C74 (ENSMMUG00000062737)	OR10A7 (ENSMMUG00000019049)	NEUROD4 (ENSMMUG00000060106) #13	TESPA1 (ENSMMUG00000016203) #14	ENSMMUG00000051101	ENSMMUG00000052854	ENSMMUG00000059486	LACRT (ENSMMUG00000000115)	PPP1R1A (ENSMMUG00000000113) #16	PDE1B (ENSMMUG00000000111) #17	NCKAP1L (ENSMMUG00000000108) #18	GTSF1 (ENSMMUG00000003758) #20	ITGA5 (ENSMMUG00000003755) #21	ZNF385A (ENSMMUG00000016669) #22	GPR84 (ENSMMUG00000016671) #23	COPZ1 (ENSMMUG00000005182) #24	NFE2 (ENSMMUG00000012992) #25	HNRNPA1 (ENSMMUG00000012989) #26	ENSMMUG00000065167	CBX5 (ENSMMUG00000004950) #27	SMUG1 (ENSMMUG00000011642) #28	HOXC4 (ENSMMUG00000055610) #29	HOXC5 (ENSMMUG00000062271) #30	HOXC6 (ENSMMUG00000046055) #31	HOXC8 (ENSMMUG00000063741) #32	HOXC9 (ENSMMUG00000063144) #33	HOXC10 (ENSMMUG00000000925) #34	HOXC11 (ENSMMUG00000000924) #35	HOXC12 (ENSMMUG00000004541) #36
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT01090000260006.D.a.b	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000155906.t	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.s #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Olive baboon	MODERN SPECIES	19	OR6C75 (ENSPANG00000045373)	ENSPANG00000016194	OR6C74 (ENSPANG00000019793)	OR10A7 (ENSPANG00000004025)	NEUROD4 (ENSPANG00000024988) #13	TESPA1 (ENSPANG00000007982) #14	ENSPANG00000043810	DCD (ENSPANG00000031454)	LACRT (ENSPANG00000040904)	PPP1R1A (ENSPANG00000002382) #16	PDE1B (ENSPANG00000014884) #17	NCKAP1L (ENSPANG00000006651) #18	GTSF1 (ENSPANG00000020579) #20	ENSPANG00000038858	ITGA5 (ENSPANG00000016195) #21	ZNF385A (ENSPANG00000020165) #22	GPR84 (ENSPANG00000015365) #23	ENSPANG00000008970 #24	NFE2 (ENSPANG00000013192) #25	HNRNPA1 (ENSPANG00000010434) #26	CBX5 (ENSPANG00000029866) #27	SMUG1 (ENSPANG00000013482) #28	HOXC4 (ENSPANG00000051288) #29	HOXC5 (ENSPANG00000037550) #30	HOXC6 (ENSPANG00000018054) #31	HOXC8 (ENSPANG00000044907) #32	HOXC9 (ENSPANG00000046239) #33	HOXC10 (ENSPANG00000004242) #34	HOXC11 (ENSPANG00000016365) #35	HOXC12 (ENSPANG00000010379) #36	HOXC13 (ENSPANG00000002383) #37
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT01090000260011.A.d.b.a.b.a.a	ENSGT01090000260006.C	ENSGT01050000244815.A.c.b.a.a.a.b	ENSGT01100000263494.a.a.a.a.a.d.a #7	ENSGT00940000155906.t	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT01050000245583	ENSGT00940000163391.A	ENSGT00940000163391.B	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a.n.i.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.b.b.s #26	ENSGT00940000158801 #27	ENSGT00860000136117	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Drill	MODERN SPECIES	1092									DCD (ENSMLEG00000037679)	LACRT (ENSMLEG00000034565)	PPP1R1A (ENSMLEG00000042421) #16	PDE1B (ENSMLEG00000043512) #17	NCKAP1L (ENSMLEG00000043743) #18	GTSF1 (ENSMLEG00000028375) #20	ITGA5 (ENSMLEG00000036758) #21	ZNF385A (ENSMLEG00000026475) #22	ENSMLEG00000021484 #23	ENSMLEG00000027572 #23	ENSMLEG00000003651 #24	NFE2 (ENSMLEG00000034045) #25	HNRNPA1 (ENSMLEG00000044414) #26	CBX5 (ENSMLEG00000036741) #27	ENSMLEG00000027378	SMUG1 (ENSMLEG00000009954) #28	HOXC5 (ENSMLEG00000038763) #30	HOXC4 (ENSMLEG00000001957) #29	HOXC6 (ENSMLEG00000003855) #31	HOXC8 (ENSMLEG00000001814) #32	HOXC9 (ENSMLEG00000033394) #33	HOXC10 (ENSMLEG00000041536) #34	HOXC11 (ENSMLEG00000035031) #35
Sooty mangabey	MODERN SPECIES	571		OR6C1 (ENSCATG00000015506)	OR6C74 (ENSCATG00000014372)	OR10A7 (ENSCATG00000029384)	OR9K2 (ENSCATG00000018443) #7	NEUROD4 (ENSCATG00000038516) #13	TESPA1 (ENSCATG00000012622) #14	ENSCATG00000036534	DCD (ENSCATG00000036877)	LACRT (ENSCATG00000029829)	PPP1R1A (ENSCATG00000031677) #16	PDE1B (ENSCATG00000044423) #17	NCKAP1L (ENSCATG00000039622) #18	GTSF1 (ENSCATG00000036328) #20	ITGA5 (ENSCATG00000006830) #21	ZNF385A (ENSCATG00000035239) #22	COPZ1 (ENSCATG00000045087) #24	NFE2 (ENSCATG00000042442) #25	HNRNPA1 (ENSCATG00000043560) #26	CBX5 (ENSCATG00000036967) #27	ENSCATG00000017526	SMUG1 (ENSCATG00000042299) #28	HOXC4 (ENSCATG00000036624) #29	HOXC5 (ENSCATG00000043360) #30	HOXC6 (ENSCATG00000004493) #31	HOXC8 (ENSCATG00000043163) #32	HOXC12 (ENSCATG00000041764) #36	HOXC13 (ENSCATG00000013447) #37	CALCOCO1 (ENSCATG00000029411)	ENSCATG00000031402	ATF7 (ENSCATG00000016814)
Atlantogenata	ANCESTRAL SPECIES	33						ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00940000167802	ENSGT00390000004405.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35
Xenarthra	ANCESTRAL SPECIES	222						ENSGT01100000263494.a.a.a.a.a.d.b.c #11	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00520000060242 #15	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000167802	ENSGT00390000004405.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.h.b ##26	ENSGT00940000158801 #27
Armadillo	MODERN SPECIES	1955							ENSDNOG00000038881 #12	NEUROD4 (ENSDNOG00000009650) #13	TESPA1 (ENSDNOG00000016743) #14	ENSDNOG00000041936 #15	PPP1R1A (ENSDNOG00000025312) #16	PDE1B (ENSDNOG00000037254) #17	NCKAP1L (ENSDNOG00000001443) #18	ENSDNOG00000001438 #20	ITGA5 (ENSDNOG00000019000) #21	ZNF385A (ENSDNOG00000048978) #22	ENSDNOG00000046327	COPZ1 (ENSDNOG00000044309) #24	NFE2 (ENSDNOG00000012506) #25	ENSDNOG00000033989 ##26	CBX5 (ENSDNOG00000009216) #27
Afrotheria	ANCESTRAL SPECIES	40				ENSGT01090000260006.E.b	ENSGT01090000260011.A.c.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.a ##26	ENSGT00950000183123.g.a.b.b #26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Afrotheria_a	ANCESTRAL SPECIES	40				ENSGT01090000260006.E.b	ENSGT01090000260011.A.c.b	ENSGT01040000240406.B	ENSGT01100000263494.a.a.a.a.a.c.b ##7	ENSGT01100000263494.a.a.a.a.a.d.b.d #12	ENSGT00940000160217 #13	ENSGT00940000160763 #14	ENSGT00940000161232 #16	ENSGT00940000160712 #17	ENSGT00390000016619.b #18	ENSGT00940000156784 #20	ENSGT00940000158061 #21	ENSGT00940000160876 #22	ENSGT00940000161671 #23	ENSGT00390000004405.a #24	ENSGT00950000182892.a.a.a #25	ENSGT00950000183123.g.a.a.b ##26	ENSGT00950000183123.g.a.a.a ##26	ENSGT00940000158801 #27	ENSGT00390000004897 #28	ENSGT00940000160794 #29	ENSGT00940000161023 #30	ENSGT00940000159254 #31	ENSGT00940000161194 #32	ENSGT00940000160866 #33	ENSGT00940000160855 #34	ENSGT00940000160009 #35	ENSGT00940000161307 #36
Hyrax	MODERN SPECIES	996															ITGA5 (ENSPCAG00000000934) #21	ZNF385A (ENSPCAG00000000899) #22	GPR84 (ENSPCAG00000000891) #23	COPZ1 (ENSPCAG00000000850) #24
Elephant	MODERN SPECIES	196	ENSLAFG00000029716 #8	ENSLAFG00000025708 #7	ENSLAFG00000028061 #7	ENSLAFG00000026481 #7	ENSLAFG00000030626 #7	ENSLAFG00000027718 #7	ENSLAFG00000031632 #7	ENSLAFG00000030613 #12	NEUROD4 (ENSLAFG00000029446) #13	TESPA1 (ENSLAFG00000014383) #14	PPP1R1A (ENSLAFG00000009233) #16	PDE1B (ENSLAFG00000027709) #17	NCKAP1L (ENSLAFG00000011071) #18	GTSF1 (ENSLAFG00000016318) #20	ITGA5 (ENSLAFG00000013847) #21	ZNF385A (ENSLAFG00000001583) #22	GPR84 (ENSLAFG00000027132) #23	COPZ1 (ENSLAFG00000001582) #24	NFE2 (ENSLAFG00000001581) #25	ENSLAFG00000029587 ##26	CBX5 (ENSLAFG00000001576) #27	SMUG1 (ENSLAFG00000002187) #28	HOXC4 (ENSLAFG00000030151) #29	HOXC5 (ENSLAFG00000002367) #30	HOXC6 (ENSLAFG00000001117) #31	HOXC8 (ENSLAFG00000018140) #32	HOXC9 (ENSLAFG00000002366) #33	HOXC10 (ENSLAFG00000018137) #34	HOXC11 (ENSLAFG00000018133) #35	HOXC12 (ENSLAFG00000024750) #36	HOXC13 (ENSLAFG00000030195) #37