Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000008195	ENSGT00390000003466	ENSGT00390000014122.i.b.a.b #8	ENSGT00940000159468 #9	ENSGT00390000001793 #10	ENSGT00940000162396 #11	ENSGT00940000161652 #13	ENSGT00940000154030.a.b #14	ENSGT00390000013670 #15	ENSGT00940000157701 #16	ENSGT00940000156464 #17	ENSGT00940000156714 #18	ENSGT01030000234564.a.a.a.a.b #19	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069 #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982 #28	ENSGT00390000016845 #29	ENSGT00390000013305.a.a.v #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36	ENSGT00940000154459.B #37
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00390000008195	ENSGT00390000003466	ENSGT00390000014122.i.b.a.b #8	ENSGT00940000159468 #9	ENSGT00390000001793 #10	ENSGT00940000162396 #11	ENSGT00940000161652 #13	ENSGT00940000154030.a.b #14	ENSGT00390000013670 #15	ENSGT00940000157701 #16	ENSGT00940000156464 #17	ENSGT00940000156714 #18	ENSGT01030000234564.a.a.a.a.b #19	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069 #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982.b #28	ENSGT00390000016845 #29	ENSGT00390000013305.a.a.v.b #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36	ENSGT00940000154459.B #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000008195	ENSGT00390000003466	ENSGT00390000014122.i.b.a.b #8	ENSGT00940000159468 #9	ENSGT00390000001793 #10	ENSGT00940000162396 #11	ENSGT00940000161652 #13	ENSGT00940000154030.a.b #14	ENSGT00390000013670 #15	ENSGT00940000157701 #16	ENSGT00940000156464 #17	ENSGT00940000156714 #18	ENSGT01030000234564.a.a.a.a.b #19	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069.k.a #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982.b #28	ENSGT00390000016845 #29	ENSGT00390000013305.a.a.v.b #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36	ENSGT00940000154459.B #37
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000022860 #7	RPS7 (ENSMMMG00000022853) #8	COLEC11 (ENSMMMG00000022843) #9	ALLC (ENSMMMG00000022836) #10	DCDC2C (ENSMMMG00000022831) #11	ENSMMMG00000022822 #12	SOX11 (ENSMMMG00000022819) #13	CMPK2 (ENSMMMG00000022812) #14	RSAD2 (ENSMMMG00000022810) #15	RNF144A (ENSMMMG00000022809) #16	ID2 (ENSMMMG00000022803) #17	KIDINS220 (ENSMMMG00000022748) #18	MBOAT2 (ENSMMMG00000022735) #19	ASAP2 (ENSMMMG00000022671) #20	ITGB1BP1 (ENSMMMG00000022669) #21	CPSF3 (ENSMMMG00000022663) #22	IAH1 (ENSMMMG00000022658) #23	ADAM17 (ENSMMMG00000022654) #24	YWHAQ (ENSMMMG00000022652) #25	TAF1B (ENSMMMG00000022638) #26	GRHL1 (ENSMMMG00000022631) #27	KLF11 (ENSMMMG00000022629) #28	ENSMMMG00000022625 #29	ENSMMMG00000022624 #30	HPCAL1 (ENSMMMG00000022618) #31	ODC1 (ENSMMMG00000022615) #32	NOL10 (ENSMMMG00000022607) #33	ATP6V1C2 (ENSMMMG00000022583) #34	PDIA6 (ENSMMMG00000022575) #35	KCNF1 (ENSMMMG00000022573) #36	C2orf50 (ENSMMMG00000022565) #37
Marmotini_b	ANCESTRAL SPECIES	17	ENSGT00390000008195	ENSGT00390000003466	ENSGT00390000014122.i.b.a.b #8	ENSGT00940000159468 #9	ENSGT00390000001793 #10	ENSGT00940000162396 #11	ENSGT00940000161652 #13	ENSGT00940000154030.a.b #14	ENSGT00390000013670 #15	ENSGT00940000157701 #16	ENSGT00940000156464 #17	ENSGT00940000156714 #18	ENSGT01030000234564.a.a.a.a.b #19	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069.k.a #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.b ##25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982.b #28	ENSGT00390000013305.a.a.v.b #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36	ENSGT00940000154459.B #37	ENSGT00940000153916.B
Arctic ground squirrel	MODERN SPECIES								SOX11 (ENSUPAG00010012315) #13	CMPK2 (ENSUPAG00010012310) #14	RSAD2 (ENSUPAG00010012305) #15	RNF144A (ENSUPAG00010012263) #16	ID2 (ENSUPAG00010012253) #17	KIDINS220 (ENSUPAG00010012028) #18	MBOAT2 (ENSUPAG00010011957) #19	ASAP2 (ENSUPAG00010011650) #20	ITGB1BP1 (ENSUPAG00010011629) #21	CPSF3 (ENSUPAG00010011610) #22	ENSUPAG00010011577 ##23	ADAM17 (ENSUPAG00010011539) #24	YWHAQ (ENSUPAG00010011534) ##25	TAF1B (ENSUPAG00010011508) #26	GRHL1 (ENSUPAG00010011483) #27	KLF11 (ENSUPAG00010011457) #28	CYS1 (ENSUPAG00010011444) #29	HPCAL1 (ENSUPAG00010011428) #31	ODC1 (ENSUPAG00010011416) #32	NOL10 (ENSUPAG00010011386) #33	ATP6V1C2 (ENSUPAG00010011265) #34	PDIA6 (ENSUPAG00010011237) #35	KCNF1 (ENSUPAG00010011227) #36	C2orf50 (ENSUPAG00010011218) #37	SLC66A3 (ENSUPAG00010011204)
Squirrel	MODERN SPECIES	132	TRAPPC12 (ENSSTOG00000027157)	ADI1 (ENSSTOG00000029152)	RNASEH1 (ENSSTOG00000012774)	RPS7 (ENSSTOG00000024830) #8	COLEC11 (ENSSTOG00000020387) #9	ALLC (ENSSTOG00000002136) #10	DCDC2C (ENSSTOG00000020234) #11	CMPK2 (ENSSTOG00000019402) #14	RSAD2 (ENSSTOG00000006147) #15	RNF144A (ENSSTOG00000027570) #16	ID2 (ENSSTOG00000019401) #17	KIDINS220 (ENSSTOG00000013232) #18	MBOAT2 (ENSSTOG00000020147) #19	ASAP2 (ENSSTOG00000004398) #20	ITGB1BP1 (ENSSTOG00000004464) #21	CPSF3 (ENSSTOG00000004476) #22	ENSSTOG00000004500 #23	ADAM17 (ENSSTOG00000004510) #24	ENSSTOG00000024378 ##25	TAF1B (ENSSTOG00000002419) #26	GRHL1 (ENSSTOG00000019842) #27	ENSSTOG00000030936 #28	ENSSTOG00000033669 #30	HPCAL1 (ENSSTOG00000001514) #31	ENSSTOG00000000386 #32	NOL10 (ENSSTOG00000005485) #33	ATP6V1C2 (ENSSTOG00000005527) #34	PDIA6 (ENSSTOG00000005550) #35	C2orf50 (ENSSTOG00000002600) #37	SLC66A3 (ENSSTOG00000027023)	ROCK2 (ENSSTOG00000002624)
Eurasian red squirrel	MODERN SPECIES	5	ADI1 (ENSSVLG00005021776)	RNASEH1 (ENSSVLG00005021750)	ENSSVLG00005021713 ##8	COLEC11 (ENSSVLG00005021395) #9	ALLC (ENSSVLG00005021266) #10	DCDC2C (ENSSVLG00005021143) #11	SOX11 (ENSSVLG00005021089) #13	CMPK2 (ENSSVLG00005020981) #14	RSAD2 (ENSSVLG00005020911) #15	RNF144A (ENSSVLG00005020868) #16	ID2 (ENSSVLG00005020830) #17	KIDINS220 (ENSSVLG00005020790) #18	MBOAT2 (ENSSVLG00005020748) #19	ASAP2 (ENSSVLG00005020310) #20	ITGB1BP1 (ENSSVLG00005020179) #21	CPSF3 (ENSSVLG00005020098) #22	IAH1 (ENSSVLG00005019997) #23	ADAM17 (ENSSVLG00005019936) #24	YWHAQ (ENSSVLG00005019899) #25	ENSSVLG00005019881	ENSSVLG00005019695 #26	ENSSVLG00005019438 #27	KLF11 (ENSSVLG00005019337) #28	CYS1 (ENSSVLG00005019295) #29	ENSSVLG00005019233 ##30	HPCAL1 (ENSSVLG00005019176) #31	ENSSVLG00005019056 #32	NOL10 (ENSSVLG00005018977) #33	ENSSVLG00005018931	ATP6V1C2 (ENSSVLG00005018543) #34	PDIA6 (ENSSVLG00005018305) #35
Hystricomorpha	ANCESTRAL SPECIES	64														ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069 #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT01090000260040.b.b.b.b.b ##25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982 #28	ENSGT00390000013305.a.a.u.a ##30	ENSGT00390000016845 #29	ENSGT00390000013305.a.a.v #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35
Hystricomorpha_a	ANCESTRAL SPECIES	70	ENSGT00390000013670 #15	ENSGT00940000154030.a.b #14	ENSGT00940000161652 #13	ENSGT00940000162396 #11	ENSGT00390000001793 #10	ENSGT00940000159468 #9	ENSGT00390000014122.i.b.a.b #8	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069 #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT01090000260040.b.b.b.b.b ##25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982 #28	ENSGT00390000013305.a.a.v #30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36	ENSGT00940000154459.B #37
Hystricomorpha_b	ANCESTRAL SPECIES	91	ENSGT00390000013670 #15	ENSGT00940000154030.a.b #14	ENSGT00940000161652 #13	ENSGT00940000162396 #11	ENSGT00390000001793 #10	ENSGT00940000159468 #9	ENSGT00390000014122.i.b.a.b #8	ENSGT00390000003466	ENSGT00390000008195	ENSGT00390000002448	ENSGT00730000111137	ENSGT00940000155671	ENSGT00940000157666	ENSGT00940000155623 #20	ENSGT00390000003990 #21	ENSGT00940000155699 #22	ENSGT00390000008069 #23	ENSGT00940000155443 #24	ENSGT01090000260040.b.b.b.b.a.a #25	ENSGT01090000260040.b.b.b.b.b ##25	ENSGT00440000033827 #26	ENSGT00940000157612 #27	ENSGT00940000155982 #28	ENSGT00390000013305.a.a.v #30	ENSGT00390000013305.a.a.u.a ##30	ENSGT00940000154645.A #31	ENSGT00950000182995.e.a.a.a #32	ENSGT00390000007900 #33	ENSGT00390000004263.b #34	ENSGT00940000155646 #35	ENSGT00940000160213 #36
Long-tailed chinchilla	MODERN SPECIES	194	CMPK2 (ENSCLAG00000002165) #14	SOX11 (ENSCLAG00000002180) #13	DCDC2C (ENSCLAG00000002204) #11	ALLC (ENSCLAG00000002247) #10	COLEC11 (ENSCLAG00000002289) #9	RPS7 (ENSCLAG00000002424) #8	RNASEH1 (ENSCLAG00000002440)	ADI1 (ENSCLAG00000002464)	TRAPPC12 (ENSCLAG00000002486)	EIPR1 (ENSCLAG00000002535)	ENSCLAG00000001592	MYT1L (ENSCLAG00000001644)	PXDN (ENSCLAG00000001727)	ASAP2 (ENSCLAG00000001989) #20	ITGB1BP1 (ENSCLAG00000002388) #21	CPSF3 (ENSCLAG00000002727) #22	IAH1 (ENSCLAG00000002879) #23	ADAM17 (ENSCLAG00000003055) #24	YWHAQ (ENSCLAG00000003576) ##25	TAF1B (ENSCLAG00000003776) #26	GRHL1 (ENSCLAG00000004000) #27	ENSCLAG00000004146 #28	RRM2 (ENSCLAG00000001926) #30	ENSCLAG00000002025	HPCAL1 (ENSCLAG00000002037) #31	ODC1 (ENSCLAG00000002140) #32	NOL10 (ENSCLAG00000002234) #33	ATP6V1C2 (ENSCLAG00000006612) #34	PDIA6 (ENSCLAG00000006956) #35	KCNF1 (ENSCLAG00000017968) #36	ENSCLAG00000007661
Degu	MODERN SPECIES	192										MYT1L (ENSODEG00000001544)	ENSODEG00000018668	PXDN (ENSODEG00000001228)	ASAP2 (ENSODEG00000001497) #20	ENSODEG00000018909	ENSODEG00000003101 #21	CPSF3 (ENSODEG00000003129) #22	IAH1 (ENSODEG00000003362) #23	ADAM17 (ENSODEG00000003472) #24	YWHAQ (ENSODEG00000001504) #25	ENSODEG00000001535	TAF1B (ENSODEG00000002052) #26	GRHL1 (ENSODEG00000002151) #27	ENSODEG00000002288 #28	RRM2 (ENSODEG00000002317) ##30	ENSODEG00000002415 #31	ODC1 (ENSODEG00000000437) #32	NOL10 (ENSODEG00000000508) #33	ATP6V1C2 (ENSODEG00000000754) #34	ENSODEG00000000842 #35	ENSODEG00000000975	ENSODEG00000000987
Guinea pig	MODERN SPECIES	75	RSAD2 (ENSCPOG00000008107) #15	CMPK2 (ENSCPOG00000001105) #14	SOX11 (ENSCPOG00000019507) #13	ENSCPOG00000022309 #11	ALLC (ENSCPOG00000014255) #10	COLEC11 (ENSCPOG00000032858) #9	RPS7 (ENSCPOG00000009795) #8	RNASEH1 (ENSCPOG00000022278)	ADI1 (ENSCPOG00000027219)	TRAPPC12 (ENSCPOG00000005749)	EIPR1 (ENSCPOG00000005737)	MYT1L (ENSCPOG00000013246)	PXDN (ENSCPOG00000011199)	ASAP2 (ENSCPOG00000010278) #20	ITGB1BP1 (ENSCPOG00000010293) #21	CPSF3 (ENSCPOG00000011299) #22	IAH1 (ENSCPOG00000011308) #23	ADAM17 (ENSCPOG00000011313) #24	YWHAQ (ENSCPOG00000011321) #25	ENSCPOG00000012839	MYCN (ENSCPOG00000020263)
Naked mole-rat female	MODERN SPECIES	19	ENSHGLG00000041769	ENSHGLG00000035478	ENSHGLG00000032201	ENSHGLG00000043794	ENSHGLG00000040330	ENSHGLG00000040838	ENSHGLG00000036700	ENSHGLG00000032848	ENSHGLG00000042745	ENSHGLG00000049015	ENSHGLG00000044591	ENSHGLG00000033649	ENSHGLG00000040434	ENSHGLG00000000974 #20	ITGB1BP1 (ENSHGLG00000000877) #21	CPSF3 (ENSHGLG00000000666) #22	ENSHGLG00000000512 #23	ADAM17 (ENSHGLG00000000502) #24	ENSHGLG00000000473 #25	ENSHGLG00000000328	ENSHGLG00000049295	ENSHGLG00000049886	NBAS (ENSHGLG00000000885)	ENSHGLG00000047840	LRATD1 (ENSHGLG00000004468)	ENSHGLG00000005931	ENSHGLG00000001922	TRIB2 (ENSHGLG00000050246)	LPIN1 (ENSHGLG00000000436)	NTSR2 (ENSHGLG00000048775)	ENSHGLG00000000910