Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00600000085213	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Glires	ANCESTRAL SPECIES	5	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00600000085213	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00600000085213	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00600000085213	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Marmotini	ANCESTRAL SPECIES	18	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812.h #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00960000190714	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812.h #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00960000190714	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Squirrel	MODERN SPECIES	76	ABCC10 (ENSSTOG00000010566) #7	DLK2 (ENSSTOG00000010600) #8	TJAP1 (ENSSTOG00000010606) #9	LRRC73 (ENSSTOG00000010618) #10	YIPF3 (ENSSTOG00000010624) #11	POLR1C (ENSSTOG00000010631) #12	XPO5 (ENSSTOG00000020172) #13	POLH (ENSSTOG00000010681) #14	GTPBP2 (ENSSTOG00000021274) #15	MAD2L1BP (ENSSTOG00000028891) #16	RSPH9 (ENSSTOG00000028063) #17	MRPS18A (ENSSTOG00000004490) #18	VEGFA (ENSSTOG00000008877) #19	MRPL14 (ENSSTOG00000004549) #20	TMEM63B (ENSSTOG00000007096) #21	CAPN11 (ENSSTOG00000003304) #22	MYMX (ENSSTOG00000030271) #23	SLC29A1 (ENSSTOG00000003337) #24	HSP90AB1 (ENSSTOG00000024614) #25	SLC35B2 (ENSSTOG00000026446) #26	NFKBIE (ENSSTOG00000013475) #27	TMEM151B (ENSSTOG00000013488) #28	TCTE1 (ENSSTOG00000033904) #29	AARS2 (ENSSTOG00000013499) #30	SPATS1 (ENSSTOG00000025344) #31	CDC5L (ENSSTOG00000016173) #32	SUPT3H (ENSSTOG00000015411) #33	RUNX2 (ENSSTOG00000010163) #34	CLIC5 (ENSSTOG00000028761) #35	ENPP4 (ENSSTOG00000011891) #36	ENPP5 (ENSSTOG00000011895) #37
Arctic ground squirrel	MODERN SPECIES	138										RSPH9 (ENSUPAG00010003487) #17	MRPS18A (ENSUPAG00010003493) #18	VEGFA (ENSUPAG00010003509) #19	ENSUPAG00010003659	MRPL14 (ENSUPAG00010003668) #20	TMEM63B (ENSUPAG00010003679) #21	CAPN11 (ENSUPAG00010003744) #22	MYMX (ENSUPAG00010003794) #23	SLC29A1 (ENSUPAG00010003804) #24	ENSUPAG00010004079 ##25	ENSUPAG00010004086 ##25	SLC35B2 (ENSUPAG00010004089) #26	NFKBIE (ENSUPAG00010004104) #27	TMEM151B (ENSUPAG00010004120) #28	ENSUPAG00010004124 #29	AARS2 (ENSUPAG00010004131) #30	SPATS1 (ENSUPAG00010004153) #31	CDC5L (ENSUPAG00010004167) #32	SUPT3H (ENSUPAG00010004183) #33	RUNX2 (ENSUPAG00010004197) #34	CLIC5 (ENSUPAG00010004493) #35	ENPP4 (ENSUPAG00010004511) #36
Alpin marmot	MODERN SPECIES	20	DLK2 (ENSMMMG00000024553) #8	TJAP1 (ENSMMMG00000024555) #9	LRRC73 (ENSMMMG00000024556) #10	YIPF3 (ENSMMMG00000024557) #11	POLR1C (ENSMMMG00000024558) #12	XPO5 (ENSMMMG00000024559) #13	POLH (ENSMMMG00000024560) #14	GTPBP2 (ENSMMMG00000024561) #15	ENSMMMG00000024562 ##16	RSPH9 (ENSMMMG00000024563) #17	MRPS18A (ENSMMMG00000024564) #18	VEGFA (ENSMMMG00000024565) #19	ENSMMMG00000024566	MRPL14 (ENSMMMG00000024567) #20	TMEM63B (ENSMMMG00000024568) #21	CAPN11 (ENSMMMG00000024569) #22	MYMX (ENSMMMG00000024570) #23	SLC29A1 (ENSMMMG00000024571) #24	HSP90AB1 (ENSMMMG00000024577) #25	SLC35B2 (ENSMMMG00000024578) #26	NFKBIE (ENSMMMG00000024579) #27	TMEM151B (ENSMMMG00000024580) #28	TCTE1 (ENSMMMG00000024581) #29	AARS2 (ENSMMMG00000024582) #30	CDC5L (ENSMMMG00000024584) #32	SUPT3H (ENSMMMG00000024585) #33	ENSMMMG00000024586	CLIC5 (ENSMMMG00000024588) #35	ENPP4 (ENSMMMG00000024589) #36	ENPP5 (ENSMMMG00000024590) #37	RCAN2 (ENSMMMG00000024592)
Eurasian red squirrel	MODERN SPECIES	16	DLK2 (ENSSVLG00005006024) #8	TJAP1 (ENSSVLG00005005960) #9	LRRC73 (ENSSVLG00005005929) #10	YIPF3 (ENSSVLG00005005873) #11	POLR1C (ENSSVLG00005005820) #12	XPO5 (ENSSVLG00005005755) #13	ENSSVLG00005005709	POLH (ENSSVLG00005005606) #14	ENSSVLG00005005500 #15	MAD2L1BP (ENSSVLG00005005455) #16	RSPH9 (ENSSVLG00005005429) #17	MRPS18A (ENSSVLG00005005389) #18	VEGFA (ENSSVLG00005005248) #19	MRPL14 (ENSSVLG00005005175) #20	TMEM63B (ENSSVLG00005005124) #21	CAPN11 (ENSSVLG00005005041) #22	MYMX (ENSSVLG00005005017) #23	SLC29A1 (ENSSVLG00005004999) #24	HSP90AB1 (ENSSVLG00005004982) #25	SLC35B2 (ENSSVLG00005004954) #26	NFKBIE (ENSSVLG00005004924) #27	TMEM151B (ENSSVLG00005004904) #28	TCTE1 (ENSSVLG00005004874) #29	AARS2 (ENSSVLG00005004851) #30	CDC5L (ENSSVLG00005004771) #32	ENSSVLG00005004758	ENSSVLG00005004703 #33	RUNX2 (ENSSVLG00005004619) #34	CLIC5 (ENSSVLG00005004461) #35	ENPP4 (ENSSVLG00005004390) #36	ENPP5 (ENSSVLG00005004369) #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Naked mole-rat female	MODERN SPECIES	4	ABCC10 (ENSHGLG00000017199) #7	DLK2 (ENSHGLG00000017186) #8	TJAP1 (ENSHGLG00000050716) #9	LRRC73 (ENSHGLG00000019162) #10	YIPF3 (ENSHGLG00000019245) #11	POLR1C (ENSHGLG00000039530) #12	XPO5 (ENSHGLG00000019191) #13	POLH (ENSHGLG00000019433) #14	GTPBP2 (ENSHGLG00000014886) #15	MAD2L1BP (ENSHGLG00000014709) #16	RSPH9 (ENSHGLG00000050155) #17	MRPS18A (ENSHGLG00000014356) #18	VEGFA (ENSHGLG00000045954) #19	MRPL14 (ENSHGLG00000048124) #20	TMEM63B (ENSHGLG00000014725) #21	ENSHGLG00000034302 #22	MYMX (ENSHGLG00000014348) #23	SLC29A1 (ENSHGLG00000013873) #24	HSP90AB1 (ENSHGLG00000013490) #25	SLC35B2 (ENSHGLG00000013337) #26	NFKBIE (ENSHGLG00000012781) #27	TMEM151B (ENSHGLG00000050065) #28	TCTE1 (ENSHGLG00000012480) #29	AARS2 (ENSHGLG00000012340) #30	SPATS1 (ENSHGLG00000012136) #31	CDC5L (ENSHGLG00000011993) #32	ENSHGLG00000011683 #33	ENSHGLG00000042819	ENSHGLG00000040299	ENSHGLG00000032005	ENSHGLG00000011154 #34
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37	ENSGT00940000159767
Hystricomorpha_b	ANCESTRAL SPECIES	3	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37	ENSGT00940000159767
Long-tailed chinchilla	MODERN SPECIES	144	ABCC10 (ENSCLAG00000012360) #7	DLK2 (ENSCLAG00000012976) #8	TJAP1 (ENSCLAG00000009058) #9	LRRC73 (ENSCLAG00000015757) #10	YIPF3 (ENSCLAG00000015747) #11	POLR1C (ENSCLAG00000009266) #12	XPO5 (ENSCLAG00000009723) #13	POLH (ENSCLAG00000010068) #14	GTPBP2 (ENSCLAG00000010271) #15	MAD2L1BP (ENSCLAG00000011121) #16	RSPH9 (ENSCLAG00000012706) #17	MRPS18A (ENSCLAG00000012929) #18	ENSCLAG00000014201 #19	MRPL14 (ENSCLAG00000016855) #20	TMEM63B (ENSCLAG00000014238) #21	CAPN11 (ENSCLAG00000013084) #22	SLC29A1 (ENSCLAG00000010529) #24	HSP90AB1 (ENSCLAG00000015740) #25	SLC35B2 (ENSCLAG00000010878) #26	NFKBIE (ENSCLAG00000011710) #27	TMEM151B (ENSCLAG00000016012) #28	TCTE1 (ENSCLAG00000013096) #29	AARS2 (ENSCLAG00000014983) #30	ENSCLAG00000017834	SPATS1 (ENSCLAG00000014840) #31	CDC5L (ENSCLAG00000014884) #32	SUPT3H (ENSCLAG00000016818) #33	RUNX2 (ENSCLAG00000010695) #34	CLIC5 (ENSCLAG00000016434) #35	ENPP4 (ENSCLAG00000013475) #36	ENPP5 (ENSCLAG00000009198) #37
Degu	MODERN SPECIES	46	ABCC10 (ENSODEG00000016331) #7	DLK2 (ENSODEG00000015810) #8	TJAP1 (ENSODEG00000016503) #9	LRRC73 (ENSODEG00000015609) #10	YIPF3 (ENSODEG00000016177) #11	ENSODEG00000015831 #12	XPO5 (ENSODEG00000017078) #13	POLH (ENSODEG00000015994) #14	GTPBP2 (ENSODEG00000015979) #15	MAD2L1BP (ENSODEG00000015761) #16	RSPH9 (ENSODEG00000015426) #17	MRPS18A (ENSODEG00000015388) #18	ENSODEG00000016904 #19	MRPL14 (ENSODEG00000015718) #20	TMEM63B (ENSODEG00000015474) #21	CAPN11 (ENSODEG00000015728) #22	ENSODEG00000015863	ENSODEG00000015488 ##25	SLC35B2 (ENSODEG00000015458) #26	NFKBIE (ENSODEG00000015243) #27	TMEM151B (ENSODEG00000015150) #28	TCTE1 (ENSODEG00000015122) #29	AARS2 (ENSODEG00000015674) #30	SPATS1 (ENSODEG00000016233) #31	CDC5L (ENSODEG00000017235) #32	ENSODEG00000016394	SUPT3H (ENSODEG00000015634) #33	RUNX2 (ENSODEG00000015699) #34	CLIC5 (ENSODEG00000015858) #35	ENPP4 (ENSODEG00000015367) #36	ENPP5 (ENSODEG00000014866) #37
Guinea pig	MODERN SPECIES	15	ABCC10 (ENSCPOG00000009891) #7	DLK2 (ENSCPOG00000037284) #8	TJAP1 (ENSCPOG00000009903) #9	LRRC73 (ENSCPOG00000024689) #10	YIPF3 (ENSCPOG00000009908) #11	POLR1C (ENSCPOG00000038098) #12	XPO5 (ENSCPOG00000009917) #13	POLH (ENSCPOG00000013907) #14	GTPBP2 (ENSCPOG00000026957) #15	MAD2L1BP (ENSCPOG00000036430) #16	RSPH9 (ENSCPOG00000020076) #17	MRPS18A (ENSCPOG00000022949) #18	ENSCPOG00000013559 #19	MRPL14 (ENSCPOG00000031064) #20	TMEM63B (ENSCPOG00000026287) #21	CAPN11 (ENSCPOG00000020426) #22	SLC29A1 (ENSCPOG00000005137) #24	HSP90AB1 (ENSCPOG00000003887) #25	SLC35B2 (ENSCPOG00000032240) #26	NFKBIE (ENSCPOG00000020455) #27	TMEM151B (ENSCPOG00000024916) #28	TCTE1 (ENSCPOG00000003889) #29	AARS2 (ENSCPOG00000009676) #30	SPATS1 (ENSCPOG00000003588) #31	CDC5L (ENSCPOG00000000961) #32	SUPT3H (ENSCPOG00000024037) #33	RUNX2 (ENSCPOG00000005277) #34	CLIC5 (ENSCPOG00000036097) #35	ENPP4 (ENSCPOG00000032719) #36	ENPP5 (ENSCPOG00000008753) #37	RCAN2 (ENSCPOG00000033481)
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Myomorpha	ANCESTRAL SPECIES	11	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Muroidea	ANCESTRAL SPECIES	42	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a	ENSGT00940000160171 #34	ENSGT00940000156406.b #35
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Cricetidae_B	ANCESTRAL SPECIES	32	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00390000016534.A	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Northern American deer mouse	MODERN SPECIES	13	Abcc10 (ENSPEMG00000008293) #7	Dlk2 (ENSPEMG00000014891) #8	Tjap1 (ENSPEMG00000000063) #9	Lrrc73 (ENSPEMG00000010422) #10	Yipf3 (ENSPEMG00000013680) #11	Polr1c (ENSPEMG00000006970) #12	Xpo5 (ENSPEMG00000020387) #13	Polh (ENSPEMG00000014884) #14	Gtpbp2 (ENSPEMG00000021976) #15	Mad2l1bp (ENSPEMG00000003113) #16	Rsph9 (ENSPEMG00000011206) #17	Mrps18a (ENSPEMG00000000405) #18	Vegfa (ENSPEMG00000023496) #19	ENSPEMG00000007451 #20	Tmem63b (ENSPEMG00000020790) #21	Capn11 (ENSPEMG00000016267) #22	Mymx (ENSPEMG00000031136) #23	Slc29a1 (ENSPEMG00000012099) #24	ENSPEMG00000020801 #25	Slc35b2 (ENSPEMG00000010433) #26	Nfkbie (ENSPEMG00000009911) #27	Tmem151b (ENSPEMG00000020728) #28	Tcte1 (ENSPEMG00000016228) #29	Aars2 (ENSPEMG00000022933) #30	Spats1 (ENSPEMG00000015089) #31	ENSPEMG00000007860 #32	ENSPEMG00000019806 #33	ENSPEMG00000026605	Runx2 (ENSPEMG00000024867) #34	ENSPEMG00000025325 #35	Enpp4 (ENSPEMG00000025230) #36
Prairie vole	MODERN SPECIES	352	Sdhaf4 (ENSMOCG00000019322)	Smap1 (ENSMOCG00000012663)	B3gat2 (ENSMOCG00000008496)	ENSMOCG00000008718	Rims1 (ENSMOCG00000016536)	Kcnq5 (ENSMOCG00000020453)	ENSMOCG00000020341	ENSMOCG00000005557	ENSMOCG00000004441	Rsph9 (ENSMOCG00000002026) #17	ENSMOCG00000021207 #18	Vegfa (ENSMOCG00000003577) #19	1600014C23Rik (ENSMOCG00000015577)	Mrpl14 (ENSMOCG00000013481) #20	Tmem63b (ENSMOCG00000014333) #21	Capn11 (ENSMOCG00000012508) #22	Mymx (ENSMOCG00000015430) #23	Slc29a1 (ENSMOCG00000020636) #24	Hsp90ab1 (ENSMOCG00000018428) #25	Slc35b2 (ENSMOCG00000016485) #26	Nfkbie (ENSMOCG00000005380) #27	Tmem151b (ENSMOCG00000022994) #28	Tcte1 (ENSMOCG00000015670) #29	Aars2 (ENSMOCG00000016383) #30	Spats1 (ENSMOCG00000012845) #31	ENSMOCG00000022910 #32	Supt3 (ENSMOCG00000001470) #33	Runx2 (ENSMOCG00000008760) #34	ENSMOCG00000011235 #35	Enpp4 (ENSMOCG00000020772) #36	Enpp5 (ENSMOCG00000022512) #37
Cricetinae	ANCESTRAL SPECIES	28	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Golden Hamster	MODERN SPECIES	649	Zfp318 (ENSMAUG00000016068)	Abcc10 (ENSMAUG00000008720) #7	Dlk2 (ENSMAUG00000005674) #8	Tjap1 (ENSMAUG00000000201) #9	Lrrc73 (ENSMAUG00000019479) #10	Yipf3 (ENSMAUG00000019181) #11	Polr1c (ENSMAUG00000014329) #12	Xpo5 (ENSMAUG00000011670) #13	Polh (ENSMAUG00000009711) #14	Gtpbp2 (ENSMAUG00000011899) #15	Mad2l1bp (ENSMAUG00000011492) #16	Rsph9 (ENSMAUG00000010828) #17	Vegfa (ENSMAUG00000007292) #19	Mrpl14 (ENSMAUG00000017756) #20	Tmem63b (ENSMAUG00000007946) #21	Capn11 (ENSMAUG00000001798) #22	Slc29a1 (ENSMAUG00000006341) #24	Hsp90ab1 (ENSMAUG00000018422) #25	Slc35b2 (ENSMAUG00000017236) #26	Nfkbie (ENSMAUG00000012047) #27	ENSMAUG00000010907	Tmem151b (ENSMAUG00000009675) #28	Tcte1 (ENSMAUG00000007852) #29	Aars2 (ENSMAUG00000015966) #30	Spats1 (ENSMAUG00000014422) #31	ENSMAUG00000013120 #32	Supt3 (ENSMAUG00000002447) #33	Runx2 (ENSMAUG00000015728) #34	Enpp4 (ENSMAUG00000013309) #36	Enpp5 (ENSMAUG00000017567) #37	Rcan2 (ENSMAUG00000016625)
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00390000016534.A	ENSGT00980000198488.m.a.b.a.b.a.b.b.b.a	ENSGT00940000160171 #34	ENSGT00940000156406.b #35
Mus	ANCESTRAL SPECIES	16	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00940000168197	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.e.a #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.e.a #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Mouse	MODERN SPECIES	8	Dlk2 (ENSMUSG00000047428) #8	Tjap1 (ENSMUSG00000012296) #9	Lrrc73 (ENSMUSG00000071073) #10	Yipf3 (ENSMUSG00000071074) #11	Polr1c (ENSMUSG00000067148) #12	Xpo5 (ENSMUSG00000067150) #13	Polh (ENSMUSG00000023953) #14	Gtpbp2 (ENSMUSG00000023952) #15	Mad2l1bp (ENSMUSG00000034509) #16	Rsph9 (ENSMUSG00000023966) #17	Mrps18a (ENSMUSG00000023967) #18	Vegfa (ENSMUSG00000023951) #19	1600014C23Rik (ENSMUSG00000094690)	Mrpl14 (ENSMUSG00000023939) #20	Tmem63b (ENSMUSG00000036026) #21	Capn11 (ENSMUSG00000058626) #22	Mymx (ENSMUSG00000079471) #23	Slc29a1 (ENSMUSG00000023942) #24	Hsp90ab1 (ENSMUSG00000023944) #25	Slc35b2 (ENSMUSG00000037089) #26	Nfkbie (ENSMUSG00000023947) #27	Tmem151b (ENSMUSG00000096847) #28	Tcte1 (ENSMUSG00000023949) #29	Aars2 (ENSMUSG00000023938) #30	Spats1 (ENSMUSG00000023935) #31	Cdc5l (ENSMUSG00000023932) #32	Supt3 (ENSMUSG00000038954) #33	Runx2 (ENSMUSG00000039153) #34	Clic5 (ENSMUSG00000023959) #35	Enpp4 (ENSMUSG00000023961) #36	Enpp5 (ENSMUSG00000023960) #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00860000135742	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.f #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
spretus	MODERN SPECIES	8	Dlk2 (MGP_SPRETEiJ_G0022578) #8	Tjap1 (MGP_SPRETEiJ_G0022577) #9	Lrrc73 (MGP_SPRETEiJ_G0022576) #10	Yipf3 (MGP_SPRETEiJ_G0022575) #11	Polr1c (MGP_SPRETEiJ_G0022574) #12	Xpo5 (MGP_SPRETEiJ_G0022573) #13	Polh (MGP_SPRETEiJ_G0022572) #14	Gtpbp2 (MGP_SPRETEiJ_G0022571) #15	Mad2l1bp (MGP_SPRETEiJ_G0022570) #16	Rsph9 (MGP_SPRETEiJ_G0022569) #17	Mrps18a (MGP_SPRETEiJ_G0022568) #18	Vegfa (MGP_SPRETEiJ_G0022567) #19	1600014C23Rik (MGP_SPRETEiJ_G0022566)	Mrpl14 (MGP_SPRETEiJ_G0022565) #20	Tmem63b (MGP_SPRETEiJ_G0022564) #21	Capn11 (MGP_SPRETEiJ_G0022563) #22	Mymx (MGP_SPRETEiJ_G0022562) #23	Slc29a1 (MGP_SPRETEiJ_G0022561) #24	Hsp90ab1 (MGP_SPRETEiJ_G0022560) #25	Slc35b2 (MGP_SPRETEiJ_G0022559) #26	Nfkbie (MGP_SPRETEiJ_G0022558) #27	Tmem151b (MGP_SPRETEiJ_G0022557) #28	Tcte1 (MGP_SPRETEiJ_G0022556) #29	Aars2 (MGP_SPRETEiJ_G0022555) #30	MGP_SPRETEiJ_G0022554 #31	MGP_SPRETEiJ_G0022553 #32	Supt3 (MGP_SPRETEiJ_G0022552) #33	Runx2 (MGP_SPRETEiJ_G0022551) #34	MGP_SPRETEiJ_G0022550 #35	Enpp4 (MGP_SPRETEiJ_G0022549) #36	Enpp5 (MGP_SPRETEiJ_G0022548) #37
Steppe mouse	MODERN SPECIES	3324															Tmem63b (ENSMSIG00000023301) #21	Capn11 (ENSMSIG00000023352) #22	Mymx (ENSMSIG00000023403) #23	Slc29a1 (ENSMSIG00000023420) #24	ENSMSIG00000023496 ##25	Slc35b2 (ENSMSIG00000023500) #26	Nfkbie (ENSMSIG00000023528) #27	Tmem151b (ENSMSIG00000023557) #28	Tcte1 (ENSMSIG00000023567) #29	Aars2 (ENSMSIG00000023583) #30	Spats1 (ENSMSIG00000023603) #31	ENSMSIG00000023672	ENSMSIG00000023679	Cdc5l (ENSMSIG00000023681) #32	ENSMSIG00000023729	Supt3 (ENSMSIG00000023732) #33	ENSMSIG00000023769 #34
Ryukyu mouse	MODERN SPECIES	8	Dlk2 (MGP_CAROLIEiJ_G0021666) #8	Tjap1 (MGP_CAROLIEiJ_G0021665) #9	Lrrc73 (MGP_CAROLIEiJ_G0021664) #10	Yipf3 (MGP_CAROLIEiJ_G0021663) #11	Polr1c (MGP_CAROLIEiJ_G0021662) #12	Xpo5 (MGP_CAROLIEiJ_G0021661) #13	Polh (MGP_CAROLIEiJ_G0021660) #14	Gtpbp2 (MGP_CAROLIEiJ_G0021659) #15	Mad2l1bp (MGP_CAROLIEiJ_G0021658) #16	Rsph9 (MGP_CAROLIEiJ_G0021657) #17	Mrps18a (MGP_CAROLIEiJ_G0021656) #18	MGP_CAROLIEiJ_G0021655 #19	MGP_CAROLIEiJ_G0021654	Mrpl14 (MGP_CAROLIEiJ_G0021653) #20	Tmem63b (MGP_CAROLIEiJ_G0021652) #21	Capn11 (MGP_CAROLIEiJ_G0021651) #22	MGP_CAROLIEiJ_G0021650 #23	Slc29a1 (MGP_CAROLIEiJ_G0021649) #24	Hsp90ab1 (MGP_CAROLIEiJ_G0021648) #25	Slc35b2 (MGP_CAROLIEiJ_G0021647) #26	Nfkbie (MGP_CAROLIEiJ_G0021646) #27	Tmem151b (MGP_CAROLIEiJ_G0021645) #28	Tcte1 (MGP_CAROLIEiJ_G0021644) #29	Aars2 (MGP_CAROLIEiJ_G0021643) #30	MGP_CAROLIEiJ_G0021642 #31	Cdc5l (MGP_CAROLIEiJ_G0021641) #32	Supt3 (MGP_CAROLIEiJ_G0021640) #33	Runx2 (MGP_CAROLIEiJ_G0021639) #34	MGP_CAROLIEiJ_G0021638 #35	Enpp4 (MGP_CAROLIEiJ_G0021637) #36	Enpp5 (MGP_CAROLIEiJ_G0021636) #37
Shrew mouse	MODERN SPECIES	9	Dlk2 (MGP_PahariEiJ_G0020658) #8	MGP_PahariEiJ_G0020657	Lrrc73 (MGP_PahariEiJ_G0020656) #10	Yipf3 (MGP_PahariEiJ_G0020655) #11	Polr1c (MGP_PahariEiJ_G0020654) #12	Xpo5 (MGP_PahariEiJ_G0020653) #13	Polh (MGP_PahariEiJ_G0020652) #14	Gtpbp2 (MGP_PahariEiJ_G0020651) #15	Mad2l1bp (MGP_PahariEiJ_G0020650) #16	Rsph9 (MGP_PahariEiJ_G0020649) #17	Mrps18a (MGP_PahariEiJ_G0020648) #18	Vegfa (MGP_PahariEiJ_G0020647) #19	1600014C23Rik (MGP_PahariEiJ_G0020646)	Mrpl14 (MGP_PahariEiJ_G0020645) #20	Tmem63b (MGP_PahariEiJ_G0020644) #21	Capn11 (MGP_PahariEiJ_G0020643) #22	MGP_PahariEiJ_G0020642 #23	Slc29a1 (MGP_PahariEiJ_G0020641) #24	MGP_PahariEiJ_G0020640 ##25	Slc35b2 (MGP_PahariEiJ_G0020639) #26	Nfkbie (MGP_PahariEiJ_G0020638) #27	Tmem151b (MGP_PahariEiJ_G0020637) #28	Tcte1 (MGP_PahariEiJ_G0020636) #29	Aars2 (MGP_PahariEiJ_G0020635) #30	MGP_PahariEiJ_G0020634	MGP_PahariEiJ_G0020633 #32	Supt3 (MGP_PahariEiJ_G0020632) #33	Runx2 (MGP_PahariEiJ_G0020631) #34	MGP_PahariEiJ_G0020630 #35	Enpp4 (MGP_PahariEiJ_G0020629) #36	Enpp5 (MGP_PahariEiJ_G0020628) #37
Rat	MODERN SPECIES	19	Tjap1 (ENSRNOG00000018980)	Lrrc73 (ENSRNOG00000039856) #10	Yipf3 (ENSRNOG00000018998) #11	Polr1c (ENSRNOG00000019079) #12	Xpo5 (ENSRNOG00000019085) #13	Polh (ENSRNOG00000019195) #14	Gtpbp2 (ENSRNOG00000019332) #15	Rps2-ps6 (ENSRNOG00000022934)	Mad2l1bp (ENSRNOG00000019463) #16	Rsph9 (ENSRNOG00000019474) #17	Mrps18a (ENSRNOG00000019511) #18	Vegfa (ENSRNOG00000019598) #19	Aars2 (ENSRNOG00000025808) #30	Mrpl14 (ENSRNOG00000019734) #20	Tmem63b (ENSRNOG00000019743) #21	Capn11 (ENSRNOG00000026025) #22	Mymx (ENSRNOG00000042497) #23	Slc29a1 (ENSRNOG00000019752) #24	Hsp90ab1 (ENSRNOG00000019834) #25	Nfkbie (ENSRNOG00000019907) #27	Slc35b2 (ENSRNOG00000019900) #26	Tmem151b (ENSRNOG00000019961) #28	Tcte1 (ENSRNOG00000065569) #29	Spats1 (ENSRNOG00000019963) #31	LOC103690502 (ENSRNOG00000064080)	Cdc5l (ENSRNOG00000019975) #32	LOC102551267 (ENSRNOG00000049311)	Supt3h (ENSRNOG00000020153) #33	Znrd1as (ENSRNOG00000020166)	Runx2 (ENSRNOG00000020193) #34	Clic5 (ENSRNOG00000047218) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	633	ENSNGAG00000013794 #7	Dlk2 (ENSNGAG00000010416) #8	Tjap1 (ENSNGAG00000001708) #9	Lrrc73 (ENSNGAG00000023998) #10	Yipf3 (ENSNGAG00000023784) #11	Polr1c (ENSNGAG00000023487) #12	Xpo5 (ENSNGAG00000015950) #13	Polh (ENSNGAG00000022986) #14	Gtpbp2 (ENSNGAG00000021674) #15	Mad2l1bp (ENSNGAG00000021195) #16	Rsph9 (ENSNGAG00000020871) #17	Mrps18a (ENSNGAG00000020052) #18	Vegfa (ENSNGAG00000018293) #19	Mrpl14 (ENSNGAG00000016826) #20	Tmem63b (ENSNGAG00000014742) #21	Capn11 (ENSNGAG00000007388) #22	Slc29a1 (ENSNGAG00000021923) #24	Hsp90ab1 (ENSNGAG00000017929) #25	Slc35b2 (ENSNGAG00000016794) #26	Nfkbie (ENSNGAG00000021559) #27	Tmem151b (ENSNGAG00000021240) #28	Tcte1 (ENSNGAG00000017387) #29	Aars2 (ENSNGAG00000018985) #30	Spats1 (ENSNGAG00000016503) #31	ENSNGAG00000015764 #32	Supt3 (ENSNGAG00000014275) #33	Runx2 (ENSNGAG00000023853) #34
Lesser Egyptian jerboa	MODERN SPECIES	41	Abcc10 (ENSJJAG00000023168) #7	Dlk2 (ENSJJAG00000013128) #8	ENSJJAG00000000504	Lrrc73 (ENSJJAG00000022553) #10	Yipf3 (ENSJJAG00000021863) #11	Polr1c (ENSJJAG00000023110) #12	Xpo5 (ENSJJAG00000009521) #13	Polh (ENSJJAG00000013744) #14	Gtpbp2 (ENSJJAG00000023430) #15	Mad2l1bp (ENSJJAG00000022925) #16	Rsph9 (ENSJJAG00000019847) #17	Mrps18a (ENSJJAG00000006567) #18	Vegfa (ENSJJAG00000007689) #19	Mrpl14 (ENSJJAG00000021477) #20	Tmem63b (ENSJJAG00000021961) #21	Capn11 (ENSJJAG00000023762) #22	Mymx (ENSJJAG00000013992) #23	ENSJJAG00000021418 #24	Hsp90ab1 (ENSJJAG00000018744) #25	Slc35b2 (ENSJJAG00000020418) #26	Nfkbie (ENSJJAG00000021238) #27	Tmem151b (ENSJJAG00000019960) #28	Tcte1 (ENSJJAG00000019641) #29	Aars2 (ENSJJAG00000015691) #30	Paqr8 (ENSJJAG00000002669)	Efhc1 (ENSJJAG00000019979)	Tram2 (ENSJJAG00000019249)	ENSJJAG00000022957	Gsta3 (ENSJJAG00000022357)	ENSJJAG00000021834 #31	Crisp2 (ENSJJAG00000018523)
Kangaroo rat	MODERN SPECIES	363	Tjap1 (ENSDORG00000000420) #9	Lrrc73 (ENSDORG00000023671) #10	Yipf3 (ENSDORG00000000424) #11	Polr1c (ENSDORG00000000429) #12	Xpo5 (ENSDORG00000000432) #13	Polh (ENSDORG00000000441) #14	Gtpbp2 (ENSDORG00000000443) #15	Mad2l1bp (ENSDORG00000027056) #16	Rsph9 (ENSDORG00000014581) #17	Mrps18a (ENSDORG00000014583) #18	ENSDORG00000023174 #19	ENSDORG00000027181 #19	ENSDORG00000025211	Mrpl14 (ENSDORG00000008236) #20	Tmem63b (ENSDORG00000008237) #21	Capn11 (ENSDORG00000026068) #22	ENSDORG00000006421	Hsp90ab1 (ENSDORG00000010981) #25	Slc35b2 (ENSDORG00000010985) #26	Nfkbie (ENSDORG00000010986) #27	Tmem151b (ENSDORG00000027493) #28	Tcte1 (ENSDORG00000002087) #29	Aars2 (ENSDORG00000002088) #30	ENSDORG00000009129 #31	ENSDORG00000009131 #32	Supt3 (ENSDORG00000007644) #33	Runx2 (ENSDORG00000007645) #34	ENSDORG00000015217 #35	Enpp4 (ENSDORG00000015218) #36	Enpp5 (ENSDORG00000016278) #37	Rcan2 (ENSDORG00000002545)
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000161082 #7	ENSGT00940000160761 #8	ENSGT00940000161543 #9	ENSGT00390000003256 #10	ENSGT00940000153766.A #11	ENSGT00950000183100.B #12	ENSGT00940000153408.A #13	ENSGT00940000157048 #14	ENSGT00940000155636 #15	ENSGT00390000003812 #16	ENSGT00390000018686 #17	ENSGT00390000006493 #18	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b ##25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922 #32	ENSGT00390000010738 #33	ENSGT00600000085213	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36
Rabbit	MODERN SPECIES	3	ABCC10 (ENSOCUG00000004357) #7	DLK2 (ENSOCUG00000004371) #8	TJAP1 (ENSOCUG00000023704) #9	LRRC73 (ENSOCUG00000005243) #10	YIPF3 (ENSOCUG00000005499) #11	POLR1C (ENSOCUG00000005504) #12	XPO5 (ENSOCUG00000005510) #13	POLH (ENSOCUG00000005525) #14	GTPBP2 (ENSOCUG00000005529) #15	MAD2L1BP (ENSOCUG00000005532) #16	RSPH9 (ENSOCUG00000005537) #17	MRPS18A (ENSOCUG00000005544) #18	VEGFA (ENSOCUG00000011610) #19	TMEM63B (ENSOCUG00000003464) #21	ENSOCUG00000015740 #20	CAPN11 (ENSOCUG00000017535) #22	MYMX (ENSOCUG00000034679) #23	SLC29A1 (ENSOCUG00000017891) #24	HSP90AB1 (ENSOCUG00000012842) ##25	SLC35B2 (ENSOCUG00000017893) #26	NFKBIE (ENSOCUG00000017894) #27	TMEM151B (ENSOCUG00000024837) #28	TCTE1 (ENSOCUG00000017899) #29	AARS2 (ENSOCUG00000021422) #30	ENSOCUG00000017227 #31	ENSOCUG00000038161	CDC5L (ENSOCUG00000017240) #32	ENSOCUG00000035183	SUPT3H (ENSOCUG00000014574) #33	ENSOCUG00000031467	RUNX2 (ENSOCUG00000011739) #34
Pika	MODERN SPECIES	3842														MRPL14 (ENSOPRG00000017183) #20	TMEM63B (ENSOPRG00000017184) #21	CAPN11 (ENSOPRG00000017195) #22
Tree shrew	MODERN SPECIES	1759																CAPN11 (ENSTBEG00000014486) #22