Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00860000135742 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.e.a ##32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00860000135742 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.e.a ##32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00860000135742 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.a.a #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786 #31	ENSGT00550000074922.f #32	ENSGT00390000010738 #33	ENSGT00940000160171 #34	ENSGT00940000156406.b #35	ENSGT00940000158831 #36	ENSGT00940000160562 #37
spretus	MODERN SPECIES	8	Dlk2 (MGP_SPRETEiJ_G0022578) #7	Tjap1 (MGP_SPRETEiJ_G0022577) #8	Lrrc73 (MGP_SPRETEiJ_G0022576) #9	Yipf3 (MGP_SPRETEiJ_G0022575) #10	Polr1c (MGP_SPRETEiJ_G0022574) #11	Xpo5 (MGP_SPRETEiJ_G0022573) #12	Polh (MGP_SPRETEiJ_G0022572) #13	Gtpbp2 (MGP_SPRETEiJ_G0022571) #14	Mad2l1bp (MGP_SPRETEiJ_G0022570) #15	Rsph9 (MGP_SPRETEiJ_G0022569) #16	Mrps18a (MGP_SPRETEiJ_G0022568) #17	Vegfa (MGP_SPRETEiJ_G0022567) #18	1600014C23Rik (MGP_SPRETEiJ_G0022566) #19	Mrpl14 (MGP_SPRETEiJ_G0022565) #20	Tmem63b (MGP_SPRETEiJ_G0022564) #21	Capn11 (MGP_SPRETEiJ_G0022563) #22	Mymx (MGP_SPRETEiJ_G0022562) #23	Slc29a1 (MGP_SPRETEiJ_G0022561) #24	Hsp90ab1 (MGP_SPRETEiJ_G0022560) #25	Slc35b2 (MGP_SPRETEiJ_G0022559) #26	Nfkbie (MGP_SPRETEiJ_G0022558) #27	Tmem151b (MGP_SPRETEiJ_G0022557) #28	Tcte1 (MGP_SPRETEiJ_G0022556) #29	Aars2 (MGP_SPRETEiJ_G0022555) #30	MGP_SPRETEiJ_G0022554 #31	MGP_SPRETEiJ_G0022553 #32	Supt3 (MGP_SPRETEiJ_G0022552) #33	Runx2 (MGP_SPRETEiJ_G0022551) #34	MGP_SPRETEiJ_G0022550 #35	Enpp4 (MGP_SPRETEiJ_G0022549) #36	Enpp5 (MGP_SPRETEiJ_G0022548) #37
Steppe mouse	MODERN SPECIES	3324															Tmem63b (ENSMSIG00000023301) #21	Capn11 (ENSMSIG00000023352) #22	Mymx (ENSMSIG00000023403) #23	Slc29a1 (ENSMSIG00000023420) #24	ENSMSIG00000023496 ##25	Slc35b2 (ENSMSIG00000023500) #26	Nfkbie (ENSMSIG00000023528) #27	Tmem151b (ENSMSIG00000023557) #28	Tcte1 (ENSMSIG00000023567) #29	Aars2 (ENSMSIG00000023583) #30	Spats1 (ENSMSIG00000023603) #31	ENSMSIG00000023672	ENSMSIG00000023679	Cdc5l (ENSMSIG00000023681) ##32	ENSMSIG00000023729	Supt3 (ENSMSIG00000023732) #33	ENSMSIG00000023769 #34
Mouse	MODERN SPECIES	8	Dlk2 (ENSMUSG00000047428) #7	Tjap1 (ENSMUSG00000012296) #8	Lrrc73 (ENSMUSG00000071073) #9	Yipf3 (ENSMUSG00000071074) #10	Polr1c (ENSMUSG00000067148) #11	Xpo5 (ENSMUSG00000067150) #12	Polh (ENSMUSG00000023953) #13	Gtpbp2 (ENSMUSG00000023952) #14	Mad2l1bp (ENSMUSG00000034509) #15	Rsph9 (ENSMUSG00000023966) #16	Mrps18a (ENSMUSG00000023967) #17	Vegfa (ENSMUSG00000023951) #18	1600014C23Rik (ENSMUSG00000094690) #19	Mrpl14 (ENSMUSG00000023939) #20	Tmem63b (ENSMUSG00000036026) #21	Capn11 (ENSMUSG00000058626) #22	Mymx (ENSMUSG00000079471) #23	Slc29a1 (ENSMUSG00000023942) #24	Hsp90ab1 (ENSMUSG00000023944) #25	Slc35b2 (ENSMUSG00000037089) #26	Nfkbie (ENSMUSG00000023947) #27	Tmem151b (ENSMUSG00000096847) #28	Tcte1 (ENSMUSG00000023949) #29	Aars2 (ENSMUSG00000023938) #30	Spats1 (ENSMUSG00000023935) #31	Cdc5l (ENSMUSG00000023932) ##32	Supt3 (ENSMUSG00000038954) #33	Runx2 (ENSMUSG00000039153) #34	Clic5 (ENSMUSG00000023959) #35	Enpp4 (ENSMUSG00000023961) #36	Enpp5 (ENSMUSG00000023960) #37
Ryukyu mouse	MODERN SPECIES	8	Dlk2 (MGP_CAROLIEiJ_G0021666) #7	Tjap1 (MGP_CAROLIEiJ_G0021665) #8	Lrrc73 (MGP_CAROLIEiJ_G0021664) #9	Yipf3 (MGP_CAROLIEiJ_G0021663) #10	Polr1c (MGP_CAROLIEiJ_G0021662) #11	Xpo5 (MGP_CAROLIEiJ_G0021661) #12	Polh (MGP_CAROLIEiJ_G0021660) #13	Gtpbp2 (MGP_CAROLIEiJ_G0021659) #14	Mad2l1bp (MGP_CAROLIEiJ_G0021658) #15	Rsph9 (MGP_CAROLIEiJ_G0021657) #16	Mrps18a (MGP_CAROLIEiJ_G0021656) #17	MGP_CAROLIEiJ_G0021655 #18	MGP_CAROLIEiJ_G0021654 #19	Mrpl14 (MGP_CAROLIEiJ_G0021653) #20	Tmem63b (MGP_CAROLIEiJ_G0021652) #21	Capn11 (MGP_CAROLIEiJ_G0021651) #22	MGP_CAROLIEiJ_G0021650 #23	Slc29a1 (MGP_CAROLIEiJ_G0021649) #24	Hsp90ab1 (MGP_CAROLIEiJ_G0021648) #25	Slc35b2 (MGP_CAROLIEiJ_G0021647) #26	Nfkbie (MGP_CAROLIEiJ_G0021646) #27	Tmem151b (MGP_CAROLIEiJ_G0021645) #28	Tcte1 (MGP_CAROLIEiJ_G0021644) #29	Aars2 (MGP_CAROLIEiJ_G0021643) #30	MGP_CAROLIEiJ_G0021642 #31	Cdc5l (MGP_CAROLIEiJ_G0021641) ##32	Supt3 (MGP_CAROLIEiJ_G0021640) #33	Runx2 (MGP_CAROLIEiJ_G0021639) #34	MGP_CAROLIEiJ_G0021638 #35	Enpp4 (MGP_CAROLIEiJ_G0021637) #36	Enpp5 (MGP_CAROLIEiJ_G0021636) #37