Pecora	ANCESTRAL SPECIES	21	ENSGT00940000161082	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000161082	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Goat	MODERN SPECIES	15	LRRC73 (ENSCHIG00000022549) #7	TJAP1 (ENSCHIG00000021772) #8	YIPF3 (ENSCHIG00000012623) #9	POLR1C (ENSCHIG00000004352) #10	XPO5 (ENSCHIG00000011271) #11	POLH (ENSCHIG00000010328) #12	GTPBP2 (ENSCHIG00000011328) #13	MAD2L1BP (ENSCHIG00000008563) #14	RSPH9 (ENSCHIG00000014085) #15	ENSCHIG00000006683 #16	MRPS18A (ENSCHIG00000013039) #17	VEGFA (ENSCHIG00000009242) #18	MRPL14 (ENSCHIG00000016433) #19	TMEM63B (ENSCHIG00000010295) #20	ENSCHIG00000017964 #21	CAPN11 (ENSCHIG00000010362) #22	SLC29A1 (ENSCHIG00000022410) #23	ENSCHIG00000017807 #24	SLC35B2 (ENSCHIG00000018057) #25	TMEM151B (ENSCHIG00000023296) #26	TCTE1 (ENSCHIG00000011244) #27	AARS2 (ENSCHIG00000018888) #28	SPATS1 (ENSCHIG00000010115) #29	CDC5L (ENSCHIG00000022031) #30	SUPT3H (ENSCHIG00000016615) #31	RUNX2 (ENSCHIG00000016080) #32	CLIC5 (ENSCHIG00000014360) #33	ENPP4 (ENSCHIG00000012993) #34	ENPP5 (ENSCHIG00000018749) #35	RCAN2 (ENSCHIG00000018360) #36	CYP39A1 (ENSCHIG00000011070) #37
Rambouillet Sheep	MODERN SPECIES	12	DLK2 (ENSOARG00020021941)	TJAP1 (ENSOARG00020021973) #8	LRRC73 (ENSOARG00020022144) #7	YIPF3 (ENSOARG00020022197) #9	POLR1C (ENSOARG00020022290) #10	XPO5 (ENSOARG00020022433) #11	POLH (ENSOARG00020022497) #12	GTPBP2 (ENSOARG00020022529) #13	MAD2L1BP (ENSOARG00020022622) #14	RSPH9 (ENSOARG00020022645) #15	MRPS18A (ENSOARG00020022680) #17	ENSOARG00020022732 ##16	VEGFA (ENSOARG00020022857) #18	MRPL14 (ENSOARG00020024309) #19	TMEM63B (ENSOARG00020024328) #20	CAPN11 (ENSOARG00020024352) #22	MYMX (ENSOARG00020024406)	SLC29A1 (ENSOARG00020024417) #23	HSP90AB1 (ENSOARG00020024426) #24	SLC35B2 (ENSOARG00020024444) #25	NFKBIE (ENSOARG00020024469)	TMEM151B (ENSOARG00020024483) #26	TCTE1 (ENSOARG00020024516) #27	AARS2 (ENSOARG00020024543) #28	CDC5L (ENSOARG00020024617) #30	SUPT3H (ENSOARG00020024651) #31	RUNX2 (ENSOARG00020024751) #32	CLIC5 (ENSOARG00020011684) #33	ENPP4 (ENSOARG00020012373) #34	ENPP5 (ENSOARG00020012428) #35	RCAN2 (ENSOARG00020012469) #36
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Bos	ANCESTRAL SPECIES	17	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Cow	DUPLICATION
Cow	MODERN SPECIES	15	TJAP1 (ENSBTAG00000011189) #8	LRRC73 (ENSBTAG00000025554) #7	YIPF3 (ENSBTAG00000018967) #9	POLR1C (ENSBTAG00000018969) #10	XPO5 (ENSBTAG00000018970) #11	POLH (ENSBTAG00000006015) #12	GTPBP2 (ENSBTAG00000006016) #13	MAD2L1BP (ENSBTAG00000009548) #14	RSPH9 (ENSBTAG00000009549) #15	MRPS18A (ENSBTAG00000025571) #17	VEGFA (ENSBTAG00000005339) #18	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #20	CAPN11 (ENSBTAG00000021066) #22	ENSBTAG00000050117 #21	ENSBTAG00000053551 #22	MYMX (ENSBTAG00000049369)	SLC29A1 (ENSBTAG00000015131) #23	HSP90AB1 (ENSBTAG00000000778) #24	SLC35B2 (ENSBTAG00000008076) #25	NFKBIE (ENSBTAG00000013705)	TMEM151B (ENSBTAG00000050799) #26	ENSBTAG00000050049 #27	AARS2 (ENSBTAG00000013722) #28	SPATS1 (ENSBTAG00000053813) #29	CDC5L (ENSBTAG00000020012) #30	SUPT3H (ENSBTAG00000032887) #31	RUNX2 (ENSBTAG00000004104) #32	CLIC5 (ENSBTAG00000010244) #33	ENPP4 (ENSBTAG00000003499) #34	ENPP5 (ENSBTAG00000015829) #35
Cow	MODERN SPECIES	15	ABCC10 (ENSBTAG00000005842)	DLK2 (ENSBTAG00000005850)	TJAP1 (ENSBTAG00000011189) #8	LRRC73 (ENSBTAG00000025554) #7	YIPF3 (ENSBTAG00000018967) #9	POLR1C (ENSBTAG00000018969) #10	XPO5 (ENSBTAG00000018970) #11	POLH (ENSBTAG00000006015) #12	GTPBP2 (ENSBTAG00000006016) #13	MAD2L1BP (ENSBTAG00000009548) #14	RSPH9 (ENSBTAG00000009549) #15	MRPS18A (ENSBTAG00000025571) #17	VEGFA (ENSBTAG00000005339) #18	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #20	CAPN11 (ENSBTAG00000021066) #22	ENSBTAG00000050117 #21	ENSBTAG00000053551 #22	MYMX (ENSBTAG00000049369)	SLC29A1 (ENSBTAG00000015131) #23	HSP90AB1 (ENSBTAG00000000778) #24	SLC35B2 (ENSBTAG00000008076) #25	NFKBIE (ENSBTAG00000013705)	TMEM151B (ENSBTAG00000050799) #26	ENSBTAG00000050049 #27	AARS2 (ENSBTAG00000013722) #28	SPATS1 (ENSBTAG00000053813) #29	CDC5L (ENSBTAG00000020012) #30	SUPT3H (ENSBTAG00000032887) #31	RUNX2 (ENSBTAG00000004104) #32	CLIC5 (ENSBTAG00000010244) #33
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000160761	ENSGT00940000161543 #8	ENSGT00390000003256 #7	ENSGT00940000153766.A #9	ENSGT00950000183100.B #10	ENSGT00940000153408.A.d #11	ENSGT00940000157048 #12	ENSGT00940000155636 #13	ENSGT00390000003812 #14	ENSGT00390000018686 #15	ENSGT00390000006493 #17	ENSGT00940000157284 #18	ENSGT00390000001121 #19	ENSGT00940000157084 #20	ENSGT00940000165752 #21	ENSGT00940000158672 #22	ENSGT00490000044373	ENSGT00950000182898.a.a.a.a.b #23	ENSGT01020000230401.a.a.a.i.b #24	ENSGT00940000157927 #25	ENSGT00940000159120	ENSGT00390000013762.b.a #26	ENSGT00940000159341 #27	ENSGT00940000158246 #28	ENSGT00390000006786 #29	ENSGT00550000074922 #30	ENSGT00390000010738 #31	ENSGT00940000160171 #32	ENSGT00940000156406.b #33	ENSGT00940000158831 #34	ENSGT00940000160562 #35
Wild yak	MODERN SPECIES	1156	DLK2 (ENSBMUG00000012238)	TJAP1 (ENSBMUG00000012199) #8	LRRC73 (ENSBMUG00000012153) #7	YIPF3 (ENSBMUG00000012145) #9	POLR1C (ENSBMUG00000012129) #10	XPO5 (ENSBMUG00000012108) #11	POLH (ENSBMUG00000012084) #12	GTPBP2 (ENSBMUG00000012068) #13	MAD2L1BP (ENSBMUG00000012054) #14	RSPH9 (ENSBMUG00000012049) #15	MRPS18A (ENSBMUG00000012027) #17	ENSBMUG00000011996 #18	MRPL14 (ENSBMUG00000011949) #19	TMEM63B (ENSBMUG00000011927) #20	ENSBMUG00000011908 #21	CAPN11 (ENSBMUG00000011894) #22	MYMX (ENSBMUG00000011878)	SLC29A1 (ENSBMUG00000011739) #23	ENSBMUG00000011676 #24	SLC35B2 (ENSBMUG00000011640) #25	NFKBIE (ENSBMUG00000011601)	TCTE1 (ENSBMUG00000011580) #27	TMEM151B (ENSBMUG00000011556) #26	AARS2 (ENSBMUG00000011497) #28	SPATS1 (ENSBMUG00000011457) #29	CDC5L (ENSBMUG00000011426) #30	SUPT3H (ENSBMUG00000011389) #31	ENSBMUG00000011236 #32	CLIC5 (ENSBMUG00000011072) #33
American bison	MODERN SPECIES	3345	DLK2 (ENSBBBG00000018845)	ENSBBBG00000018854	LRRC73 (ENSBBBG00000018869) #7	YIPF3 (ENSBBBG00000004770) #9	POLR1C (ENSBBBG00000018932) #10	XPO5 (ENSBBBG00000018959) #11	POLH (ENSBBBG00000004824) #12	GTPBP2 (ENSBBBG00000004840) #13	MAD2L1BP (ENSBBBG00000004843) #14	RSPH9 (ENSBBBG00000004846) #15	MRPS18A (ENSBBBG00000019022) #17	VEGFA (ENSBBBG00000004895) #18	MRPL14 (ENSBBBG00000019131) #19	TMEM63B (ENSBBBG00000019165) #20	ENSBBBG00000019176 #21	CAPN11 (ENSBBBG00000004944) #22	MYMX (ENSBBBG00000019201)	SLC29A1 (ENSBBBG00000019250) #23	ENSBBBG00000009167 #24	SLC35B2 (ENSBBBG00000005002) #25	NFKBIE (ENSBBBG00000005007)	TMEM151B (ENSBBBG00000019315) #26	TCTE1 (ENSBBBG00000005019) #27	AARS2 (ENSBBBG00000005050) #28	SPATS1 (ENSBBBG00000019339) #29	CDC5L (ENSBBBG00000008519) #30	SUPT3H (ENSBBBG00000019372) #31	RUNX2 (ENSBBBG00000005249) #32	CLIC5 (ENSBBBG00000005260) #33	ENPP4 (ENSBBBG00000005264) #34	ENPP5 (ENSBBBG00000019507) #35
Siberian musk deer	MODERN SPECIES	355	ABCC10 (ENSMMSG00000006490)	DLK2 (ENSMMSG00000006539)	TJAP1 (ENSMMSG00000006591) #8	LRRC73 (ENSMMSG00000006666) #7	YIPF3 (ENSMMSG00000006698) #9	POLR1C (ENSMMSG00000006780) #10	XPO5 (ENSMMSG00000006908) #11	POLH (ENSMMSG00000007030) #12	GTPBP2 (ENSMMSG00000007098) #13	MAD2L1BP (ENSMMSG00000007200) #14	RSPH9 (ENSMMSG00000007231) #15	MRPS18A (ENSMMSG00000007259) #17	VEGFA (ENSMMSG00000007348) #18	MRPL14 (ENSMMSG00000007639) #19	TMEM63B (ENSMMSG00000007690) #20	CAPN11 (ENSMMSG00000007786) #22	MYMX (ENSMMSG00000007910)	SLC29A1 (ENSMMSG00000007929) #23	ENSMMSG00000007967 #24	SLC35B2 (ENSMMSG00000008039) #25	NFKBIE (ENSMMSG00000008087)	TMEM151B (ENSMMSG00000008119) #26	TCTE1 (ENSMMSG00000008158) #27	AARS2 (ENSMMSG00000008187) #28	SPATS1 (ENSMMSG00000008299) #29	CDC5L (ENSMMSG00000008352) #30	SUPT3H (ENSMMSG00000008424) #31	RUNX2 (ENSMMSG00000008596) #32	ENSMMSG00000008737	CLIC5 (ENSMMSG00000008775) #33	ENPP4 (ENSMMSG00000008907) #34
Yarkand deer	MODERN SPECIES	30	DLK2 (ENSCHYG00000002324)	TJAP1 (ENSCHYG00000002358) #8	LRRC73 (ENSCHYG00000002399) #7	YIPF3 (ENSCHYG00000002418) #9	POLR1C (ENSCHYG00000002490) #10	XPO5 (ENSCHYG00000002599) #11	POLH (ENSCHYG00000002691) #12	GTPBP2 (ENSCHYG00000002731) #13	ENSCHYG00000002760 #14	RSPH9 (ENSCHYG00000002772) #15	MRPS18A (ENSCHYG00000002800) #17	VEGFA (ENSCHYG00000002863) #18	ENSCHYG00000003034	MRPL14 (ENSCHYG00000003077) #19	TMEM63B (ENSCHYG00000003109) #20	CAPN11 (ENSCHYG00000003195) #22	MYMX (ENSCHYG00000003237)	SLC29A1 (ENSCHYG00000003261) #23	ENSCHYG00000003288 #24	SLC35B2 (ENSCHYG00000003323) #25	NFKBIE (ENSCHYG00000003350)	TMEM151B (ENSCHYG00000003360) #26	TCTE1 (ENSCHYG00000003376) #27	AARS2 (ENSCHYG00000003393) #28	SPATS1 (ENSCHYG00000003434) #29	ENSCHYG00000003485	CDC5L (ENSCHYG00000003502) #30	ENSCHYG00000003525 #31	RUNX2 (ENSCHYG00000003599) #32	ENSCHYG00000003693	CLIC5 (ENSCHYG00000003742) #33