Pecora	ANCESTRAL SPECIES	21	ENSGT00940000161082	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000161082	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Rambouillet Sheep	MODERN SPECIES	12	DLK2 (ENSOARG00020021941) #7	TJAP1 (ENSOARG00020021973) #8	LRRC73 (ENSOARG00020022144) #9	YIPF3 (ENSOARG00020022197) #10	POLR1C (ENSOARG00020022290) #11	XPO5 (ENSOARG00020022433) #12	POLH (ENSOARG00020022497) #13	GTPBP2 (ENSOARG00020022529) #14	MAD2L1BP (ENSOARG00020022622) #15	RSPH9 (ENSOARG00020022645) #16	MRPS18A (ENSOARG00020022680) #17	ENSOARG00020022732 #18	VEGFA (ENSOARG00020022857) #19	MRPL14 (ENSOARG00020024309) #20	TMEM63B (ENSOARG00020024328) #21	CAPN11 (ENSOARG00020024352) #22	MYMX (ENSOARG00020024406) #23	SLC29A1 (ENSOARG00020024417) #24	HSP90AB1 (ENSOARG00020024426) #25	SLC35B2 (ENSOARG00020024444) #26	NFKBIE (ENSOARG00020024469) #27	TMEM151B (ENSOARG00020024483) #28	TCTE1 (ENSOARG00020024516) #29	AARS2 (ENSOARG00020024543) #30	CDC5L (ENSOARG00020024617) #31	SUPT3H (ENSOARG00020024651) #32	RUNX2 (ENSOARG00020024751) #33	CLIC5 (ENSOARG00020011684) #34	ENPP4 (ENSOARG00020012373) #35	ENPP5 (ENSOARG00020012428) #36	RCAN2 (ENSOARG00020012469) #37
Goat	MODERN SPECIES	15	LRRC73 (ENSCHIG00000022549) #9	TJAP1 (ENSCHIG00000021772) #8	YIPF3 (ENSCHIG00000012623) #10	POLR1C (ENSCHIG00000004352) #11	XPO5 (ENSCHIG00000011271) #12	POLH (ENSCHIG00000010328) #13	GTPBP2 (ENSCHIG00000011328) #14	MAD2L1BP (ENSCHIG00000008563) #15	RSPH9 (ENSCHIG00000014085) #16	ENSCHIG00000006683 ##18	MRPS18A (ENSCHIG00000013039) #17	VEGFA (ENSCHIG00000009242) #19	MRPL14 (ENSCHIG00000016433) #20	TMEM63B (ENSCHIG00000010295) #21	ENSCHIG00000017964	CAPN11 (ENSCHIG00000010362) #22	SLC29A1 (ENSCHIG00000022410) #24	ENSCHIG00000017807 #25	SLC35B2 (ENSCHIG00000018057) #26	TMEM151B (ENSCHIG00000023296) #28	TCTE1 (ENSCHIG00000011244) #29	AARS2 (ENSCHIG00000018888) #30	SPATS1 (ENSCHIG00000010115)	CDC5L (ENSCHIG00000022031) #31	SUPT3H (ENSCHIG00000016615) #32	RUNX2 (ENSCHIG00000016080) #33	CLIC5 (ENSCHIG00000014360) #34	ENPP4 (ENSCHIG00000012993) #35	ENPP5 (ENSCHIG00000018749) #36	RCAN2 (ENSCHIG00000018360) #37	CYP39A1 (ENSCHIG00000011070)
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Bos	ANCESTRAL SPECIES	17	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Cow	DUPLICATION
Cow	MODERN SPECIES	15	TJAP1 (ENSBTAG00000011189) #8	LRRC73 (ENSBTAG00000025554) #9	YIPF3 (ENSBTAG00000018967) #10	POLR1C (ENSBTAG00000018969) #11	XPO5 (ENSBTAG00000018970) #12	POLH (ENSBTAG00000006015) #13	GTPBP2 (ENSBTAG00000006016) #14	MAD2L1BP (ENSBTAG00000009548) #15	RSPH9 (ENSBTAG00000009549) #16	MRPS18A (ENSBTAG00000025571) #17	VEGFA (ENSBTAG00000005339) #19	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #21	CAPN11 (ENSBTAG00000021066) #22	ENSBTAG00000050117	ENSBTAG00000053551 #22	MYMX (ENSBTAG00000049369) #23	SLC29A1 (ENSBTAG00000015131) #24	HSP90AB1 (ENSBTAG00000000778) #25	SLC35B2 (ENSBTAG00000008076) #26	NFKBIE (ENSBTAG00000013705) #27	TMEM151B (ENSBTAG00000050799) #28	ENSBTAG00000050049 #29	AARS2 (ENSBTAG00000013722) #30	SPATS1 (ENSBTAG00000053813)	CDC5L (ENSBTAG00000020012) #31	SUPT3H (ENSBTAG00000032887) #32	RUNX2 (ENSBTAG00000004104) #33	CLIC5 (ENSBTAG00000010244) #34	ENPP4 (ENSBTAG00000003499) #35	ENPP5 (ENSBTAG00000015829) #36
Cow	MODERN SPECIES	15	ABCC10 (ENSBTAG00000005842)	DLK2 (ENSBTAG00000005850) #7	TJAP1 (ENSBTAG00000011189) #8	LRRC73 (ENSBTAG00000025554) #9	YIPF3 (ENSBTAG00000018967) #10	POLR1C (ENSBTAG00000018969) #11	XPO5 (ENSBTAG00000018970) #12	POLH (ENSBTAG00000006015) #13	GTPBP2 (ENSBTAG00000006016) #14	MAD2L1BP (ENSBTAG00000009548) #15	RSPH9 (ENSBTAG00000009549) #16	MRPS18A (ENSBTAG00000025571) #17	VEGFA (ENSBTAG00000005339) #19	ENSBTAG00000050249	TMEM63B (ENSBTAG00000032680) #21	CAPN11 (ENSBTAG00000021066) #22	ENSBTAG00000050117	ENSBTAG00000053551 #22	MYMX (ENSBTAG00000049369) #23	SLC29A1 (ENSBTAG00000015131) #24	HSP90AB1 (ENSBTAG00000000778) #25	SLC35B2 (ENSBTAG00000008076) #26	NFKBIE (ENSBTAG00000013705) #27	TMEM151B (ENSBTAG00000050799) #28	ENSBTAG00000050049 #29	AARS2 (ENSBTAG00000013722) #30	SPATS1 (ENSBTAG00000053813)	CDC5L (ENSBTAG00000020012) #31	SUPT3H (ENSBTAG00000032887) #32	RUNX2 (ENSBTAG00000004104) #33	CLIC5 (ENSBTAG00000010244) #34
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000160761 #7	ENSGT00940000161543 #8	ENSGT00390000003256 #9	ENSGT00940000153766.A #10	ENSGT00950000183100.B #11	ENSGT00940000153408.A.d #12	ENSGT00940000157048 #13	ENSGT00940000155636 #14	ENSGT00390000003812 #15	ENSGT00390000018686 #16	ENSGT00390000006493 #17	ENSGT00940000157284 #19	ENSGT00390000001121 #20	ENSGT00940000157084 #21	ENSGT00940000165752	ENSGT00940000158672 #22	ENSGT00490000044373 #23	ENSGT00950000182898.a.a.a.a.b #24	ENSGT01020000230401.a.a.a.i.b #25	ENSGT00940000157927 #26	ENSGT00940000159120 #27	ENSGT00390000013762.b.a #28	ENSGT00940000159341 #29	ENSGT00940000158246 #30	ENSGT00390000006786	ENSGT00550000074922 #31	ENSGT00390000010738 #32	ENSGT00940000160171 #33	ENSGT00940000156406.b #34	ENSGT00940000158831 #35	ENSGT00940000160562 #36
Wild yak	MODERN SPECIES	1156	DLK2 (ENSBMUG00000012238) #7	TJAP1 (ENSBMUG00000012199) #8	LRRC73 (ENSBMUG00000012153) #9	YIPF3 (ENSBMUG00000012145) #10	POLR1C (ENSBMUG00000012129) #11	XPO5 (ENSBMUG00000012108) #12	POLH (ENSBMUG00000012084) #13	GTPBP2 (ENSBMUG00000012068) #14	MAD2L1BP (ENSBMUG00000012054) #15	RSPH9 (ENSBMUG00000012049) #16	MRPS18A (ENSBMUG00000012027) #17	ENSBMUG00000011996 #19	MRPL14 (ENSBMUG00000011949) #20	TMEM63B (ENSBMUG00000011927) #21	ENSBMUG00000011908	CAPN11 (ENSBMUG00000011894) #22	MYMX (ENSBMUG00000011878) #23	SLC29A1 (ENSBMUG00000011739) #24	ENSBMUG00000011676 #25	SLC35B2 (ENSBMUG00000011640) #26	NFKBIE (ENSBMUG00000011601) #27	TCTE1 (ENSBMUG00000011580) #29	TMEM151B (ENSBMUG00000011556) #28	AARS2 (ENSBMUG00000011497) #30	SPATS1 (ENSBMUG00000011457)	CDC5L (ENSBMUG00000011426) #31	SUPT3H (ENSBMUG00000011389) #32	ENSBMUG00000011236 #33	CLIC5 (ENSBMUG00000011072) #34
American bison	MODERN SPECIES	3345	DLK2 (ENSBBBG00000018845) #7	ENSBBBG00000018854	LRRC73 (ENSBBBG00000018869) #9	YIPF3 (ENSBBBG00000004770) #10	POLR1C (ENSBBBG00000018932) #11	XPO5 (ENSBBBG00000018959) #12	POLH (ENSBBBG00000004824) #13	GTPBP2 (ENSBBBG00000004840) #14	MAD2L1BP (ENSBBBG00000004843) #15	RSPH9 (ENSBBBG00000004846) #16	MRPS18A (ENSBBBG00000019022) #17	VEGFA (ENSBBBG00000004895) #19	MRPL14 (ENSBBBG00000019131) #20	TMEM63B (ENSBBBG00000019165) #21	ENSBBBG00000019176	CAPN11 (ENSBBBG00000004944) #22	MYMX (ENSBBBG00000019201) #23	SLC29A1 (ENSBBBG00000019250) #24	ENSBBBG00000009167 #25	SLC35B2 (ENSBBBG00000005002) #26	NFKBIE (ENSBBBG00000005007) #27	TMEM151B (ENSBBBG00000019315) #28	TCTE1 (ENSBBBG00000005019) #29	AARS2 (ENSBBBG00000005050) #30	SPATS1 (ENSBBBG00000019339)	CDC5L (ENSBBBG00000008519) #31	SUPT3H (ENSBBBG00000019372) #32	RUNX2 (ENSBBBG00000005249) #33	CLIC5 (ENSBBBG00000005260) #34	ENPP4 (ENSBBBG00000005264) #35	ENPP5 (ENSBBBG00000019507) #36
Siberian musk deer	MODERN SPECIES	355	ABCC10 (ENSMMSG00000006490)	DLK2 (ENSMMSG00000006539) #7	TJAP1 (ENSMMSG00000006591) #8	LRRC73 (ENSMMSG00000006666) #9	YIPF3 (ENSMMSG00000006698) #10	POLR1C (ENSMMSG00000006780) #11	XPO5 (ENSMMSG00000006908) #12	POLH (ENSMMSG00000007030) #13	GTPBP2 (ENSMMSG00000007098) #14	MAD2L1BP (ENSMMSG00000007200) #15	RSPH9 (ENSMMSG00000007231) #16	MRPS18A (ENSMMSG00000007259) #17	VEGFA (ENSMMSG00000007348) #19	MRPL14 (ENSMMSG00000007639) #20	TMEM63B (ENSMMSG00000007690) #21	CAPN11 (ENSMMSG00000007786) #22	MYMX (ENSMMSG00000007910) #23	SLC29A1 (ENSMMSG00000007929) #24	ENSMMSG00000007967 #25	SLC35B2 (ENSMMSG00000008039) #26	NFKBIE (ENSMMSG00000008087) #27	TMEM151B (ENSMMSG00000008119) #28	TCTE1 (ENSMMSG00000008158) #29	AARS2 (ENSMMSG00000008187) #30	SPATS1 (ENSMMSG00000008299)	CDC5L (ENSMMSG00000008352) #31	SUPT3H (ENSMMSG00000008424) #32	RUNX2 (ENSMMSG00000008596) #33	ENSMMSG00000008737	CLIC5 (ENSMMSG00000008775) #34	ENPP4 (ENSMMSG00000008907) #35
Yarkand deer	MODERN SPECIES	30	DLK2 (ENSCHYG00000002324) #7	TJAP1 (ENSCHYG00000002358) #8	LRRC73 (ENSCHYG00000002399) #9	YIPF3 (ENSCHYG00000002418) #10	POLR1C (ENSCHYG00000002490) #11	XPO5 (ENSCHYG00000002599) #12	POLH (ENSCHYG00000002691) #13	GTPBP2 (ENSCHYG00000002731) #14	ENSCHYG00000002760 #15	RSPH9 (ENSCHYG00000002772) #16	MRPS18A (ENSCHYG00000002800) #17	VEGFA (ENSCHYG00000002863) #19	ENSCHYG00000003034	MRPL14 (ENSCHYG00000003077) #20	TMEM63B (ENSCHYG00000003109) #21	CAPN11 (ENSCHYG00000003195) #22	MYMX (ENSCHYG00000003237) #23	SLC29A1 (ENSCHYG00000003261) #24	ENSCHYG00000003288 #25	SLC35B2 (ENSCHYG00000003323) #26	NFKBIE (ENSCHYG00000003350) #27	TMEM151B (ENSCHYG00000003360) #28	TCTE1 (ENSCHYG00000003376) #29	AARS2 (ENSCHYG00000003393) #30	SPATS1 (ENSCHYG00000003434)	ENSCHYG00000003485	CDC5L (ENSCHYG00000003502) #31	ENSCHYG00000003525 #32	RUNX2 (ENSCHYG00000003599) #33	ENSCHYG00000003693	CLIC5 (ENSCHYG00000003742) #34