Glires	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Rodentia	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Guinea pig	MODERN SPECIES	25	KDF1 (ENSCPOG00000022999) #7	TENT5B (ENSCPOG00000032542) #8	SLC9A1 (ENSCPOG00000035897) #9	WDTC1 (ENSCPOG00000012347) #10	TMEM222 (ENSCPOG00000020198) #11	SYTL1 (ENSCPOG00000012354) #12	MAP3K6 (ENSCPOG00000012359) #13	CD164L2 (ENSCPOG00000022092) #14	GPR3 (ENSCPOG00000027123) #15	WASF2 (ENSCPOG00000012376) #16	AHDC1 (ENSCPOG00000022607) #17	FGR (ENSCPOG00000015092) #18	ENSCPOG00000031828 #19	FAM76A (ENSCPOG00000006186) #20	STX12 (ENSCPOG00000013160) #21	PPP1R8 (ENSCPOG00000036078) #22	THEMIS2 (ENSCPOG00000033796) #23	RPA2 (ENSCPOG00000008766) #24	SMPDL3B (ENSCPOG00000008773) #25	ENSCPOG00000033302 #26	EYA3 (ENSCPOG00000012512) #27	PTAFR (ENSCPOG00000031748) #28	DNAJC8 (ENSCPOG00000014652) #29	ATP5IF1 (ENSCPOG00000030836) #30	SESN2 (ENSCPOG00000000236) #31	MED18 (ENSCPOG00000038084) #32	PHACTR4 (ENSCPOG00000003219) #33	RCC1 (ENSCPOG00000010069) #34	TRNAU1AP (ENSCPOG00000001925) #35	RAB42 (ENSCPOG00000037627) #36	TAF12 (ENSCPOG00000009044) #37
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Long-tailed chinchilla	MODERN SPECIES	159	NUDC (ENSCLAG00000008191)	KDF1 (ENSCLAG00000009636) #7	TENT5B (ENSCLAG00000010180) #8	SLC9A1 (ENSCLAG00000011250) #9	WDTC1 (ENSCLAG00000012710) #10	TMEM222 (ENSCLAG00000014379) #11	SYTL1 (ENSCLAG00000011750) #12	MAP3K6 (ENSCLAG00000015178) #13	FCN3 (ENSCLAG00000010084)	GPR3 (ENSCLAG00000012893) #15	WASF2 (ENSCLAG00000013958) #16	AHDC1 (ENSCLAG00000013754) #17	FGR (ENSCLAG00000014147) #18	FAM76A (ENSCLAG00000008844) #20	STX12 (ENSCLAG00000013795) #21	PPP1R8 (ENSCLAG00000011211) #22	THEMIS2 (ENSCLAG00000012140) #23	RPA2 (ENSCLAG00000010772) #24	SMPDL3B (ENSCLAG00000011768) #25	XKR8 (ENSCLAG00000011287)	EYA3 (ENSCLAG00000008901) #27	PTAFR (ENSCLAG00000017842) #28	DNAJC8 (ENSCLAG00000007390) #29	ATP5IF1 (ENSCLAG00000014624) #30	SESN2 (ENSCLAG00000011979) #31	MED18 (ENSCLAG00000015343) #32	PHACTR4 (ENSCLAG00000016145) #33	RCC1 (ENSCLAG00000008107) #34	TRNAU1AP (ENSCLAG00000008223) #35	RAB42 (ENSCLAG00000010175) #36	TAF12 (ENSCLAG00000007187) #37
Degu	MODERN SPECIES	204	SLC9A1 (ENSODEG00000003659) #9	ENSODEG00000003743	WDTC1 (ENSODEG00000003804) #10	TMEM222 (ENSODEG00000003675) #11	SYTL1 (ENSODEG00000003707) #12	MAP3K6 (ENSODEG00000004172) #13	CD164L2 (ENSODEG00000004416) #14	GPR3 (ENSODEG00000004543) #15	WASF2 (ENSODEG00000003793) #16	AHDC1 (ENSODEG00000019150) #17	FGR (ENSODEG00000004016) #18	ENSODEG00000019010	FAM76A (ENSODEG00000004142) #20	ENSODEG00000019037	STX12 (ENSODEG00000004182) #21	PPP1R8 (ENSODEG00000004352) #22	ENSODEG00000004373	THEMIS2 (ENSODEG00000004403) #23	ENSODEG00000004443 #24	ENSODEG00000003467 #25	XKR8 (ENSODEG00000003481)	EYA3 (ENSODEG00000003507) #27	PTAFR (ENSODEG00000018990) #28	ENSODEG00000003721 #29	ATP5IF1 (ENSODEG00000003747) #30	SESN2 (ENSODEG00000003769) #31	MED18 (ENSODEG00000003791) #32	ENSODEG00000003828	ENSODEG00000018954	PHACTR4 (ENSODEG00000003857) #33	RCC1 (ENSODEG00000003970) #34
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000047714	SLC9A1 (ENSHGLG00000036829) #9	ENSHGLG00000044722	WDTC1 (ENSHGLG00000013846) #10	ENSHGLG00000007610	TMEM222 (ENSHGLG00000011121) #11	SYTL1 (ENSHGLG00000011880) #12	MAP3K6 (ENSHGLG00000012888) #13	FCN3 (ENSHGLG00000012337)	ENSHGLG00000013863 #14	GPR3 (ENSHGLG00000046961) #15	WASF2 (ENSHGLG00000048286) #16	AHDC1 (ENSHGLG00000014470) #17	FGR (ENSHGLG00000018738) #18	FAM76A (ENSHGLG00000009747) #20	ENSHGLG00000014326 #22	THEMIS2 (ENSHGLG00000019146) #23	RPA2 (ENSHGLG00000018528) #24	SMPDL3B (ENSHGLG00000012112) #25	XKR8 (ENSHGLG00000012712)	ENSHGLG00000046470	EYA3 (ENSHGLG00000018515) #27	ENSHGLG00000032519	PTAFR (ENSHGLG00000048424) #28	DNAJC8 (ENSHGLG00000011449) #29	ENSHGLG00000050011 #30	SESN2 (ENSHGLG00000011617) #31	MED18 (ENSHGLG00000049561) #32	PHACTR4 (ENSHGLG00000012380) #33	RCC1 (ENSHGLG00000010563) #34	ENSHGLG00000010380 #35
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00900000143263	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Marmotini	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00960000190607	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Marmotini_b	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00960000190607	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Squirrel	MODERN SPECIES	74	TENT5B (ENSSTOG00000022787) #8	ENSSTOG00000021677	ENSSTOG00000025429	SLC9A1 (ENSSTOG00000009815) #9	WDTC1 (ENSSTOG00000014225) #10	TMEM222 (ENSSTOG00000014234) #11	SYTL1 (ENSSTOG00000014242) #12	MAP3K6 (ENSSTOG00000014251) #13	CD164L2 (ENSSTOG00000024078) #14	GPR3 (ENSSTOG00000024790) #15	WASF2 (ENSSTOG00000003138) #16	AHDC1 (ENSSTOG00000025025) #17	FGR (ENSSTOG00000026717) #18	FAM76A (ENSSTOG00000004331) #20	STX12 (ENSSTOG00000019943) #21	PPP1R8 (ENSSTOG00000004381) #22	THEMIS2 (ENSSTOG00000034218) #23	RPA2 (ENSSTOG00000004433) #24	SMPDL3B (ENSSTOG00000004468) #25	XKR8 (ENSSTOG00000023254)	EYA3 (ENSSTOG00000004478) #27	PTAFR (ENSSTOG00000015934) #28	DNAJC8 (ENSSTOG00000012834) #29	ATP5IF1 (ENSSTOG00000020766) #30	SESN2 (ENSSTOG00000009293) #31	MED18 (ENSSTOG00000020723) #32	PHACTR4 (ENSSTOG00000006463) #33	RCC1 (ENSSTOG00000012131) #34	TRNAU1AP (ENSSTOG00000000079) #35	RAB42 (ENSSTOG00000000084) #36	TAF12 (ENSSTOG00000000086) #37
Arctic ground squirrel	MODERN SPECIES	92	TENT5B (ENSUPAG00010021251) #8	ENSUPAG00010021249	SLC9A1 (ENSUPAG00010021229) #9	WDTC1 (ENSUPAG00010021189) #10	TMEM222 (ENSUPAG00010021173) #11	SYTL1 (ENSUPAG00010021146) #12	MAP3K6 (ENSUPAG00010021121) #13	CD164L2 (ENSUPAG00010021117) #14	GPR3 (ENSUPAG00010021112) #15	WASF2 (ENSUPAG00010021099) #16	AHDC1 (ENSUPAG00010021095) #17	FGR (ENSUPAG00010021065) #18	FAM76A (ENSUPAG00010021053) #20	STX12 (ENSUPAG00010021044) #21	ENSUPAG00010021039	PPP1R8 (ENSUPAG00010021025) #22	THEMIS2 (ENSUPAG00010021016) #23	SMPDL3B (ENSUPAG00010021005) #25	XKR8 (ENSUPAG00010020998)	EYA3 (ENSUPAG00010020872) #27	PTAFR (ENSUPAG00010020865) #28	ENSUPAG00010020856	ATP5IF1 (ENSUPAG00010020850) #30	SESN2 (ENSUPAG00010020839) #31	ENSUPAG00010020838	MED18 (ENSUPAG00010020827) #32	PHACTR4 (ENSUPAG00010020803) #33	RCC1 (ENSUPAG00010020770) #34	TRNAU1AP (ENSUPAG00010020750) #35	RAB42 (ENSUPAG00010020728) #36	ENSUPAG00010020706 #37
Alpin marmot	MODERN SPECIES	15	ENSMMMG00000013673	TRNP1 (ENSMMMG00000013667)	TENT5B (ENSMMMG00000013661) #8	SLC9A1 (ENSMMMG00000013639) #9	WDTC1 (ENSMMMG00000013616) #10	TMEM222 (ENSMMMG00000013607) #11	SYTL1 (ENSMMMG00000013574) #12	MAP3K6 (ENSMMMG00000013538) #13	CD164L2 (ENSMMMG00000013519) #14	GPR3 (ENSMMMG00000013517) #15	WASF2 (ENSMMMG00000013504) #16	FGR (ENSMMMG00000013453) #18	FAM76A (ENSMMMG00000013430) #20	STX12 (ENSMMMG00000013420) #21	ENSMMMG00000013416	PPP1R8 (ENSMMMG00000013396) #22	THEMIS2 (ENSMMMG00000013395) #23	RPA2 (ENSMMMG00000013382) #24	SMPDL3B (ENSMMMG00000013366) #25	XKR8 (ENSMMMG00000013348)	EYA3 (ENSMMMG00000013195) #27	PTAFR (ENSMMMG00000013184) #28	DNAJC8 (ENSMMMG00000013133) #29	ATP5IF1 (ENSMMMG00000013117) #30	SESN2 (ENSMMMG00000013099) #31	MED18 (ENSMMMG00000013084) #32	PHACTR4 (ENSMMMG00000013031) #33	RCC1 (ENSMMMG00000012973) #34	TRNAU1AP (ENSMMMG00000012958) #35	RAB42 (ENSMMMG00000012933) #36	TAF12 (ENSMMMG00000012915) #37
Eurasian red squirrel	MODERN SPECIES		TRNP1 (ENSSVLG00005002944)	TENT5B (ENSSVLG00005002952) #8	ENSSVLG00005002968	SLC9A1 (ENSSVLG00005002990) #9	WDTC1 (ENSSVLG00005003051) #10	TMEM222 (ENSSVLG00005003203) #11	SYTL1 (ENSSVLG00005003264) #12	MAP3K6 (ENSSVLG00005003393) #13	CD164L2 (ENSSVLG00005003518) #14	GPR3 (ENSSVLG00005003531) #15	WASF2 (ENSSVLG00005003551) #16	FGR (ENSSVLG00005003584) #18	FAM76A (ENSSVLG00005010519) #20	ENSSVLG00005010611	STX12 (ENSSVLG00005010643) #21	PPP1R8 (ENSSVLG00005010667) #22	THEMIS2 (ENSSVLG00005010773) #23	RPA2 (ENSSVLG00005010920) #24	SMPDL3B (ENSSVLG00005011082) #25	XKR8 (ENSSVLG00005011375)	ENSSVLG00005011412	EYA3 (ENSSVLG00005011513) #27	PTAFR (ENSSVLG00005011699) #28	DNAJC8 (ENSSVLG00005011722) #29	ATP5IF1 (ENSSVLG00005011758) #30	SESN2 (ENSSVLG00005011840) #31	MED18 (ENSSVLG00005011896) #32	ENSSVLG00005011930	PHACTR4 (ENSSVLG00005011991) #33	RCC1 (ENSSVLG00005012359) #34	TRNAU1AP (ENSSVLG00005012466) #35
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00940000163188	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Muroidea	ANCESTRAL SPECIES	3	ENSGT00900000143263	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00900000143263	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00900000143263	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00940000164617	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37	ENSGT00410000025596.a.b
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	Kdf1 (ENSMOCG00000008803) #7	Trnp1 (ENSMOCG00000004450)	Tent5b (ENSMOCG00000006029) #8	Slc9a1 (ENSMOCG00000001951) #9	Wdtc1 (ENSMOCG00000021708) #10	Tmem222 (ENSMOCG00000001826) #11	Sytl1 (ENSMOCG00000006535) #12	Map3k6 (ENSMOCG00000022830) #13	Cd164l2 (ENSMOCG00000012161) #14	Gpr3 (ENSMOCG00000014276) #15	Wasf2 (ENSMOCG00000015492) #16	Ahdc1 (ENSMOCG00000016500) #17	Fgr (ENSMOCG00000019562) #18	Fam76a (ENSMOCG00000021395) #20	Stx12 (ENSMOCG00000014196) #21	ENSMOCG00000022691 #22	Themis2 (ENSMOCG00000003168) #23	Rpa2 (ENSMOCG00000007092) #24	Smpdl3b (ENSMOCG00000016324) #25	Xkr8 (ENSMOCG00000002218)	Eya3 (ENSMOCG00000004582) #27	Ptafr (ENSMOCG00000013409) #28	Dnajc8 (ENSMOCG00000017213) #29	Atpif1 (ENSMOCG00000002419) #30	Sesn2 (ENSMOCG00000012718) #31	Med18 (ENSMOCG00000022182) #32	Phactr4 (ENSMOCG00000012753) #33	Rcc1 (ENSMOCG00000016589) #34	Trnau1ap (ENSMOCG00000011189) #35	Rab42 (ENSMOCG00000021639) #36	Taf12 (ENSMOCG00000006333) #37
Prairie vole	MODERN SPECIES	360	Prdx4 (ENSMOCG00000014602)	Ptchd1 (ENSMOCG00000020483)	ENSMOCG00000017700	ENSMOCG00000012478 ##29	ENSMOCG00000006009	Phex (ENSMOCG00000021326)	Sms (ENSMOCG00000016092)	Yy2 (ENSMOCG00000013780)	Mbtps2 (ENSMOCG00000016533)	Smpx (ENSMOCG00000009712)	Cnksr2 (ENSMOCG00000000158)	ENSMOCG00000017907	ENSMOCG00000016797	Rps6ka3 (ENSMOCG00000012164)	ENSMOCG00000013551	ENSMOCG00000004138 #22	Map7d2 (ENSMOCG00000019149)	Bclaf3 (ENSMOCG00000005833)	Sh3kbp1 (ENSMOCG00000020425)	Map3k15 (ENSMOCG00000013071)	Pdha1 (ENSMOCG00000002601)	Adgrg2 (ENSMOCG00000011315)	Phka2 (ENSMOCG00000021208)	Ppef1 (ENSMOCG00000019014)	Rs1 (ENSMOCG00000012992)	Cdkl5 (ENSMOCG00000014110)	Scml2 (ENSMOCG00000004081)	Bend2 (ENSMOCG00000002447)	Rai2 (ENSMOCG00000020088)	Nhs (ENSMOCG00000016164)	ENSMOCG00000006840
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000024927	Tent5b (ENSPEMG00000026289) #8	Slc9a1 (ENSPEMG00000008998) #9	Wdtc1 (ENSPEMG00000011264) #10	Tmem222 (ENSPEMG00000017489) #11	Sytl1 (ENSPEMG00000011614) #12	Map3k6 (ENSPEMG00000015180) #13	Cd164l2 (ENSPEMG00000013041) #14	Gpr3 (ENSPEMG00000005212) #15	Wasf2 (ENSPEMG00000011815) #16	ENSPEMG00000013859	Ahdc1 (ENSPEMG00000014274) #17	Fgr (ENSPEMG00000000914) #18	ENSPEMG00000014678 #20	Stx12 (ENSPEMG00000025346) #21	Ppp1r8 (ENSPEMG00000003512) #22	Themis2 (ENSPEMG00000008336) #23	Rpa2 (ENSPEMG00000006270) #24	Smpdl3b (ENSPEMG00000003316) #25	Xkr8 (ENSPEMG00000025921)	Eya3 (ENSPEMG00000000391) #27	Ptafr (ENSPEMG00000025544) #28	Dnajc8 (ENSPEMG00000013544) #29	Atpif1 (ENSPEMG00000025196) #30	Sesn2 (ENSPEMG00000001779) #31	Med18 (ENSPEMG00000015562) #32	ENSPEMG00000004708	Phactr4 (ENSPEMG00000000179) #33	Rcc1 (ENSPEMG00000016697) #34	Trnau1ap (ENSPEMG00000007877) #35	Rab42 (ENSPEMG00000027698) #36
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00900000143263	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Golden Hamster	MODERN SPECIES	709	Kdf1 (ENSMAUG00000021929) #7	Trnp1 (ENSMAUG00000019939)	Tent5b (ENSMAUG00000014675) #8	ENSMAUG00000001078 #9	Wdtc1 (ENSMAUG00000004693) #10	Tmem222 (ENSMAUG00000007829) #11	Sytl1 (ENSMAUG00000018014) #12	Map3k6 (ENSMAUG00000017302) #13	ENSMAUG00000011191	Gpr3 (ENSMAUG00000014246) #15	Wasf2 (ENSMAUG00000012124) #16	Ahdc1 (ENSMAUG00000013108) #17	Fgr (ENSMAUG00000006765) #18	Fam76a (ENSMAUG00000016561) #20	Stx12 (ENSMAUG00000016314) #21	Ppp1r8 (ENSMAUG00000009797) #22	Themis2 (ENSMAUG00000000821) #23	Rpa2 (ENSMAUG00000002825) #24	Smpdl3b (ENSMAUG00000014184) #25	Xkr8 (ENSMAUG00000009395)	Eya3 (ENSMAUG00000015674) #27	Ptafr (ENSMAUG00000008850) #28	ENSMAUG00000018320	Sesn2 (ENSMAUG00000000726) #31	Med18 (ENSMAUG00000019176) #32	Phactr4 (ENSMAUG00000018484) #33	Rcc1 (ENSMAUG00000020618) #34	ENSMAUG00000020183	Rab42 (ENSMAUG00000020223) #36	Taf12 (ENSMAUG00000019991) #37	Gmeb1 (ENSMAUG00000008912)
Chinese hamster chok1gshd	MODERN SPECIES	111	ENSCGRG00001022474	Trnp1 (ENSCGRG00001024587)	Tent5b (ENSCGRG00001024770) #8	Slc9a1 (ENSCGRG00001002747) #9	Wdtc1 (ENSCGRG00001015126) #10	Tmem222 (ENSCGRG00001020116) #11	Sytl1 (ENSCGRG00001013995) #12	Map3k6 (ENSCGRG00001019547) #13	Cd164l2 (ENSCGRG00001024895) #14	Gpr3 (ENSCGRG00001001244) #15	Wasf2 (ENSCGRG00001020852) #16	Ahdc1 (ENSCGRG00001012820) #17	Fgr (ENSCGRG00001024485) #18	ENSCGRG00001007863 #20	Stx12 (ENSCGRG00001016934) #21	Ppp1r8 (ENSCGRG00001019839) #22	Themis2 (ENSCGRG00001024729) #23	Rpa2 (ENSCGRG00001007332) #24	Smpdl3b (ENSCGRG00001016883) #25	Xkr8 (ENSCGRG00001017118)	Eya3 (ENSCGRG00001018576) #27	Ptafr (ENSCGRG00001012404) #28	ENSCGRG00001000534 #29	Atpif1 (ENSCGRG00001023397) #30	Sesn2 (ENSCGRG00001020650) #31	MED18 (ENSCGRG00001022480) #32	Phactr4 (ENSCGRG00001021956) #33	ENSCGRG00001023596 #34	Trnau1ap (ENSCGRG00001004713) #35	Rab42 (ENSCGRG00001019426) #36	Taf12 (ENSCGRG00001024959) #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Mus	ANCESTRAL SPECIES	3	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Mouse	MODERN SPECIES	13	Kdf1 (ENSMUSG00000037600) #7	Trnp1 (ENSMUSG00000056596)	Tent5b (ENSMUSG00000046694) #8	Slc9a1 (ENSMUSG00000028854) #9	Wdtc1 (ENSMUSG00000037622) #10	Tmem222 (ENSMUSG00000028857) #11	Sytl1 (ENSMUSG00000028860) #12	Map3k6 (ENSMUSG00000028862) #13	Cd164l2 (ENSMUSG00000028865) #14	Gpr3 (ENSMUSG00000049649) #15	Wasf2 (ENSMUSG00000028868) #16	Ahdc1 (ENSMUSG00000037692) #17	Fgr (ENSMUSG00000028874) #18	Fam76a (ENSMUSG00000028878) #20	Stx12 (ENSMUSG00000028879) #21	Ppp1r8 (ENSMUSG00000028882) #22	Themis2 (ENSMUSG00000037731) #23	Rpa2 (ENSMUSG00000028884) #24	Smpdl3b (ENSMUSG00000028885) #25	Xkr8 (ENSMUSG00000037752)	Eya3 (ENSMUSG00000028886) #27	Ptafr (ENSMUSG00000056529) #28	Dnajc8 (ENSMUSG00000054405) #29	Atpif1 (ENSMUSG00000054428) #30	Sesn2 (ENSMUSG00000028893) #31	Med18 (ENSMUSG00000066042) #32	Phactr4 (ENSMUSG00000066043) #33	Rcc1 (ENSMUSG00000028896) #34	Trnau1ap (ENSMUSG00000028898) #35	Rab42 (ENSMUSG00000089687) #36	Taf12 (ENSMUSG00000028899) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000016565 #7	ENSGT00390000017418	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073.g #20	ENSGT01000000214440.A.a.b.a #21	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00390000012569.a #29	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00390000003312 #32	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37
Steppe mouse	MODERN SPECIES	2142													Fgr (ENSMSIG00000013558) #18	ENSMSIG00000013640 #20	Stx12 (ENSMSIG00000013772) #21	Ppp1r8 (ENSMSIG00000013794) #22
spretus	MODERN SPECIES	13	Kdf1 (MGP_SPRETEiJ_G0027572) #7	Trnp1 (MGP_SPRETEiJ_G0027571)	Tent5b (MGP_SPRETEiJ_G0027570) #8	Slc9a1 (MGP_SPRETEiJ_G0027569) #9	Wdtc1 (MGP_SPRETEiJ_G0027568) #10	Tmem222 (MGP_SPRETEiJ_G0027567) #11	Sytl1 (MGP_SPRETEiJ_G0027566) #12	Map3k6 (MGP_SPRETEiJ_G0027565) #13	Cd164l2 (MGP_SPRETEiJ_G0027564) #14	Gpr3 (MGP_SPRETEiJ_G0027563) #15	Wasf2 (MGP_SPRETEiJ_G0027562) #16	Ahdc1 (MGP_SPRETEiJ_G0027561) #17	Fgr (MGP_SPRETEiJ_G0027560) #18	Fam76a (MGP_SPRETEiJ_G0027559) #20	Stx12 (MGP_SPRETEiJ_G0027558) #21	Ppp1r8 (MGP_SPRETEiJ_G0027557) #22	Themis2 (MGP_SPRETEiJ_G0027556) #23	Rpa2 (MGP_SPRETEiJ_G0027555) #24	Smpdl3b (MGP_SPRETEiJ_G0027554) #25	Xkr8 (MGP_SPRETEiJ_G0027553)	Eya3 (MGP_SPRETEiJ_G0027552) #27	Ptafr (MGP_SPRETEiJ_G0027551) #28	Dnajc8 (MGP_SPRETEiJ_G0027550) #29	Atpif1 (MGP_SPRETEiJ_G0027549) #30	Sesn2 (MGP_SPRETEiJ_G0027548) #31	Med18 (MGP_SPRETEiJ_G0027547) #32	Phactr4 (MGP_SPRETEiJ_G0027546) #33	Rcc1 (MGP_SPRETEiJ_G0027545) #34	Trnau1ap (MGP_SPRETEiJ_G0027544) #35	Rab42 (MGP_SPRETEiJ_G0027543) #36	Taf12 (MGP_SPRETEiJ_G0027542) #37
Ryukyu mouse	MODERN SPECIES	13	Kdf1 (MGP_CAROLIEiJ_G0026591) #7	Trnp1 (MGP_CAROLIEiJ_G0026590)	Tent5b (MGP_CAROLIEiJ_G0026589) #8	Slc9a1 (MGP_CAROLIEiJ_G0026588) #9	Wdtc1 (MGP_CAROLIEiJ_G0026587) #10	Tmem222 (MGP_CAROLIEiJ_G0026586) #11	Sytl1 (MGP_CAROLIEiJ_G0026585) #12	Map3k6 (MGP_CAROLIEiJ_G0026584) #13	Cd164l2 (MGP_CAROLIEiJ_G0026583) #14	Gpr3 (MGP_CAROLIEiJ_G0026582) #15	Wasf2 (MGP_CAROLIEiJ_G0026581) #16	Ahdc1 (MGP_CAROLIEiJ_G0026580) #17	Fgr (MGP_CAROLIEiJ_G0026579) #18	Fam76a (MGP_CAROLIEiJ_G0026578) #20	Stx12 (MGP_CAROLIEiJ_G0026577) #21	Ppp1r8 (MGP_CAROLIEiJ_G0026576) #22	Themis2 (MGP_CAROLIEiJ_G0026575) #23	Rpa2 (MGP_CAROLIEiJ_G0026574) #24	Smpdl3b (MGP_CAROLIEiJ_G0026573) #25	Xkr8 (MGP_CAROLIEiJ_G0026572)	Eya3 (MGP_CAROLIEiJ_G0026571) #27	Ptafr (MGP_CAROLIEiJ_G0026570) #28	MGP_CAROLIEiJ_G0026569 #29	Atpif1 (MGP_CAROLIEiJ_G0026568) #30	Sesn2 (MGP_CAROLIEiJ_G0026567) #31	Med18 (MGP_CAROLIEiJ_G0026566) #32	Phactr4 (MGP_CAROLIEiJ_G0026565) #33	Rcc1 (MGP_CAROLIEiJ_G0026564) #34	Trnau1ap (MGP_CAROLIEiJ_G0026563) #35	Gmeb1 (MGP_CAROLIEiJ_G0026561)	Oprd1 (MGP_CAROLIEiJ_G0026559)
Shrew mouse	MODERN SPECIES	19	Kdf1 (MGP_PahariEiJ_G0028924) #7	Trnp1 (MGP_PahariEiJ_G0028923)	Tent5b (MGP_PahariEiJ_G0028922) #8	Slc9a1 (MGP_PahariEiJ_G0028921) #9	Wdtc1 (MGP_PahariEiJ_G0028920) #10	Tmem222 (MGP_PahariEiJ_G0028919) #11	Sytl1 (MGP_PahariEiJ_G0028918) #12	Map3k6 (MGP_PahariEiJ_G0028917) #13	Cd164l2 (MGP_PahariEiJ_G0028916) #14	Gpr3 (MGP_PahariEiJ_G0028915) #15	Wasf2 (MGP_PahariEiJ_G0028914) #16	Ahdc1 (MGP_PahariEiJ_G0028913) #17	Fgr (MGP_PahariEiJ_G0028912) #18	Fam76a (MGP_PahariEiJ_G0028911) #20	MGP_PahariEiJ_G0028910 #21	Ppp1r8 (MGP_PahariEiJ_G0028909) #22	Themis2 (MGP_PahariEiJ_G0028908) #23	Rpa2 (MGP_PahariEiJ_G0028907) #24	Smpdl3b (MGP_PahariEiJ_G0028906) #25	Xkr8 (MGP_PahariEiJ_G0028905)	Eya3 (MGP_PahariEiJ_G0028904) #27	Ptafr (MGP_PahariEiJ_G0028903) #28	MGP_PahariEiJ_G0028902 #29	Atpif1 (MGP_PahariEiJ_G0028901) #30	Sesn2 (MGP_PahariEiJ_G0028900) #31	Med18 (MGP_PahariEiJ_G0028899) #32	Phactr4 (MGP_PahariEiJ_G0028898) #33	Rcc1 (MGP_PahariEiJ_G0028897) #34	Trnau1ap (MGP_PahariEiJ_G0028896) #35	Rab42 (MGP_PahariEiJ_G0028895) #36	Taf12 (MGP_PahariEiJ_G0028894) #37
Rat	MODERN SPECIES	15	ENSRNOG00000068236	Trnp1 (ENSRNOG00000055936)	Tent5b (ENSRNOG00000056153) #8	Slc9a1 (ENSRNOG00000007982) #9	Wdtc1 (ENSRNOG00000008377) #10	Tmem222 (ENSRNOG00000008564) #11	Map3k6 (ENSRNOG00000008936) #13	Cd164l2 (ENSRNOG00000009505) #14	Sytl1 (ENSRNOG00000008600) #12	Gpr3 (ENSRNOG00000009540) #15	Wasf2 (ENSRNOG00000009805) #16	Ahdc1 (ENSRNOG00000042855) #17	Fgr (ENSRNOG00000009912) #18	Fam76a (ENSRNOG00000011254) #20	Stx12 (ENSRNOG00000011804) #21	Ppp1r8 (ENSRNOG00000059550) #22	Themis2 (ENSRNOG00000012965) #23	Rpa2 (ENSRNOG00000013005) #24	Smpdl3b (ENSRNOG00000042326) #25	Xkr8 (ENSRNOG00000024312)	Eya3 (ENSRNOG00000010396) #27	Ptafr (ENSRNOG00000013231) #28	Dnajc8 (ENSRNOG00000013255) #29	Atp5if1 (ENSRNOG00000013300) #30	Sesn2 (ENSRNOG00000042785) #31	Med18 (ENSRNOG00000067073) #32	LOC120102993 (ENSRNOG00000031506)	Phactr4 (ENSRNOG00000046922) #33	Rcc1 (ENSRNOG00000050106) #34	Trnau1ap (ENSRNOG00000055344) #35	Rab42 (ENSRNOG00000063150) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	967	Tent5b (ENSNGAG00000010187) #8	ENSNGAG00000020552	Slc9a1 (ENSNGAG00000016127) #9	Wdtc1 (ENSNGAG00000013121) #10	Tmem222 (ENSNGAG00000011488) #11	Sytl1 (ENSNGAG00000014815) #12	Map3k6 (ENSNGAG00000017010) #13	Cd164l2 (ENSNGAG00000019740) #14	Gpr3 (ENSNGAG00000017974) #15	Wasf2 (ENSNGAG00000017438) #16	Ahdc1 (ENSNGAG00000013639) #17	Fgr (ENSNGAG00000014779) #18	ENSNGAG00000012320	Fam76a (ENSNGAG00000021702) #20	Stx12 (ENSNGAG00000022319) #21	Ppp1r8 (ENSNGAG00000001089) #22
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	201	Kdf1 (ENSJJAG00000017615) #7	ENSJJAG00000017789 #8	Slc9a1 (ENSJJAG00000019281) #9	Wdtc1 (ENSJJAG00000021957) #10	Tmem222 (ENSJJAG00000002275) #11	Sytl1 (ENSJJAG00000011352) #12	Map3k6 (ENSJJAG00000020163) #13	ENSJJAG00000014104	Cd164l2 (ENSJJAG00000014470) #14	Gpr3 (ENSJJAG00000018961) #15	Wasf2 (ENSJJAG00000019149) #16	Ahdc1 (ENSJJAG00000019425) #17	Fgr (ENSJJAG00000019812) #18	ENSJJAG00000002452 #20	Stx12 (ENSJJAG00000004079) #21	ENSJJAG00000010784 #22	Themis2 (ENSJJAG00000012926) #23	ENSJJAG00000014579 #24	Smpdl3b (ENSJJAG00000015036) #25	Xkr8 (ENSJJAG00000015552)	Eya3 (ENSJJAG00000017580) #27	Ptafr (ENSJJAG00000012719) #28	ENSJJAG00000009301	Atpif1 (ENSJJAG00000010517) #30	Sesn2 (ENSJJAG00000011184) #31	Phactr4 (ENSJJAG00000015640) #33	ENSJJAG00000022388	ENSJJAG00000012669	Rcc1 (ENSJJAG00000002119) #34	Trnau1ap (ENSJJAG00000010128) #35	Rab42 (ENSJJAG00000021507) #36
Lesser Egyptian jerboa	MODERN SPECIES	55	Malt1 (ENSJJAG00000016390)	Alpk2 (ENSJJAG00000013993)	Nedd4l (ENSJJAG00000020973)	Atp8b1 (ENSJJAG00000012498)	Nars (ENSJJAG00000017350)	Fech (ENSJJAG00000011444)	Onecut2 (ENSJJAG00000017927)	St8sia3 (ENSJJAG00000016099)	ENSJJAG00000013165	ENSJJAG00000014521	Txnl1 (ENSJJAG00000016664)	Tcf4 (ENSJJAG00000018021)	ENSJJAG00000011980	Ccdc68 (ENSJJAG00000020246)	Rab27b (ENSJJAG00000019754)	ENSJJAG00000020176 #22	Dynap (ENSJJAG00000011504)	4930503L19Rik (ENSJJAG00000010721)	Stard6 (ENSJJAG00000023620)	Mbd2 (ENSJJAG00000024363)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	325	ENSDORG00000030030	Tent5b (ENSDORG00000015648) #8	Slc9a1 (ENSDORG00000012211) #9	Wdtc1 (ENSDORG00000012982) #10	Tmem222 (ENSDORG00000009464) #11	Sytl1 (ENSDORG00000009466) #12	Map3k6 (ENSDORG00000009469) #13	ENSDORG00000009474	Cd164l2 (ENSDORG00000009477) #14	Gpr3 (ENSDORG00000007347) #15	Wasf2 (ENSDORG00000007346) #16	Ahdc1 (ENSDORG00000010729) #17	Fgr (ENSDORG00000015238) #18	Fam76a (ENSDORG00000000575) #20	Stx12 (ENSDORG00000001059) #21	ENSDORG00000025172 #22	Themis2 (ENSDORG00000003740) #23	Rpa2 (ENSDORG00000003741) #24	Smpdl3b (ENSDORG00000015612) #25	Xkr8 (ENSDORG00000023428)	Eya3 (ENSDORG00000015614) #27	Ptafr (ENSDORG00000027100) #28	Dnajc8 (ENSDORG00000004488) #29	Atpif1 (ENSDORG00000004489) #30	Sesn2 (ENSDORG00000004491) #31	Med18 (ENSDORG00000003626) #32	Phactr4 (ENSDORG00000003281) #33	Rcc1 (ENSDORG00000008750) #34	Rab42 (ENSDORG00000023607) #36	Trnau1ap (ENSDORG00000006349) #35	Taf12 (ENSDORG00000015036) #37
Kangaroo rat	MODERN SPECIES	493										ENSDORG00000005862	Fxr1 (ENSDORG00000005853)	Ccdc39 (ENSDORG00000002728)	Ttc14 (ENSDORG00000002727)	Pex5l (ENSDORG00000013007)	Usp13 (ENSDORG00000013004)	ENSDORG00000001060 #22	Ndufb5 (ENSDORG00000007651)	Mrpl47 (ENSDORG00000007650)	Actl6a (ENSDORG00000007648)	Gnb4 (ENSDORG00000015363)	Mfn1 (ENSDORG00000016388)	Zfp639 (ENSDORG00000004733)
Lagomorpha	ANCESTRAL SPECIES	21	ENSGT00390000015719.c	ENSGT00940000155361	ENSGT00390000016565 #7	ENSGT00940000160747 #8	ENSGT00940000156338 #9	ENSGT00950000182900.B #10	ENSGT00390000007371 #11	ENSGT00940000160932 #12	ENSGT00940000159398 #13	ENSGT00530000063929.a.b #14	ENSGT01060000248564.b.a.a.a #15	ENSGT00950000182962.b.a #16	ENSGT00390000018883 #17	ENSGT00940000157554 #18	ENSGT00940000160073 #20	ENSGT00940000156115 #22	ENSGT00530000063770.c.a #23	ENSGT00390000010045 #24	ENSGT00950000183182.a.a #25	ENSGT01090000260093.b	ENSGT00950000182978.B #27	ENSGT01060000248589.D #28	ENSGT00940000164617	ENSGT00390000006264 #30	ENSGT00950000183168.B.a #31	ENSGT00940000157582 #33	ENSGT00940000155543 #34	ENSGT00940000156139 #35	ENSGT00940000162094 #36	ENSGT00390000002144 #37	ENSGT00410000025596.a.b
Pika	MODERN SPECIES	527																ENSOPRG00000002214 #22	THEMIS2 (ENSOPRG00000002243) #23	RPA2 (ENSOPRG00000002255) #24	SMPDL3B (ENSOPRG00000002294) #25	XKR8 (ENSOPRG00000002313)	EYA3 (ENSOPRG00000002321) #27	PTAFR (ENSOPRG00000002354) #28
Rabbit	MODERN SPECIES	4	NR0B2 (ENSOCUG00000006416)	NUDC (ENSOCUG00000006418)	KDF1 (ENSOCUG00000006421) #7	ENSOCUG00000006426 #8	SLC9A1 (ENSOCUG00000023061) #9	WDTC1 (ENSOCUG00000016358) #10	TMEM222 (ENSOCUG00000007371) #11	SYTL1 (ENSOCUG00000002371) #12	MAP3K6 (ENSOCUG00000002379) #13	ENSOCUG00000007587 #14	GPR3 (ENSOCUG00000027272) #15	WASF2 (ENSOCUG00000002394) #16	AHDC1 (ENSOCUG00000008914) #17	FGR (ENSOCUG00000008922) #18	FAM76A (ENSOCUG00000014830) #20	PPP1R8 (ENSOCUG00000013594) #22	SMPDL3B (ENSOCUG00000012589) #25	EYA3 (ENSOCUG00000008020) #27	PTAFR (ENSOCUG00000017831) #28	ENSOCUG00000017932 #30	SESN2 (ENSOCUG00000014896) #31	PHACTR4 (ENSOCUG00000027528) #33	ENSOCUG00000002346 #34	ENSOCUG00000002353	RAB42 (ENSOCUG00000003933) #36	TAF12 (ENSOCUG00000003935) #37	GMEB1 (ENSOCUG00000010893)	YTHDF2 (ENSOCUG00000010612)	OPRD1 (ENSOCUG00000001033)	ENSOCUG00000030120	EPB41 (ENSOCUG00000006641)