Amniota ANCESTRAL SPECIES 99 ENSGT00940000156906 ENSGT00390000008608 ENSGT00940000163309 ENSGT00390000002659 ENSGT01020000230412.A.c.b.d ENSGT00390000018059.b ENSGT00940000160907 ENSGT00940000160836.d ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 Mammalia ANCESTRAL SPECIES 69 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Theria ANCESTRAL SPECIES 3 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Eutheria ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Boreoeutheria ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Euarchontoglires ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Euarchontoglires_A ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Glires ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Rodentia ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Rodentia_B ANCESTRAL SPECIES ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Myomorpha ANCESTRAL SPECIES 12 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Muroidea ANCESTRAL SPECIES 6 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Muroidea_A ANCESTRAL SPECIES 5 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Murinae ANCESTRAL SPECIES 5 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863.eb.a ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Mus ANCESTRAL SPECIES 7 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863.eb.a ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a.h.a ENSGT00940000155444.a.h.b ENSGT00940000155444.a.g ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Mus_A ANCESTRAL SPECIES 9 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.p ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863.eb.a ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a.h.a.b ENSGT00940000155444.a.h.a.a ENSGT00940000155444.a.h.b ENSGT00940000155444.a.g ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a Mus_B ANCESTRAL SPECIES 8 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.p ENSGT01100000263570.B.o ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863.eb.a ENSGT00820000127150 ENSGT00940000155444.b.e ENSGT00940000155444.a.h.a.b ENSGT00940000155444.a.h.a.a ENSGT00940000155444.a.h.b ENSGT00940000155444.a.g ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a Mus_C ANCESTRAL SPECIES 6 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.p ENSGT01100000263570.B.o ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863.eb.a ENSGT00820000127150 ENSGT00940000155444.b.e ENSGT00940000155444.a.h.a.b ENSGT00940000155444.a.h.a.a ENSGT00940000155444.a.g ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 spretus DUPLICATION spretus MODERN SPECIES 8 H2-DMb2 (MGP_SPRETEiJ_G0022351) #7 Psmb9 (MGP_SPRETEiJ_G0022352) #8 Tap1 (MGP_SPRETEiJ_G0022353) #9 Psmb8 (MGP_SPRETEiJ_G0022354) #10 Tap2 (MGP_SPRETEiJ_G0022355) #11 MGP_SPRETEiJ_G0022356 #12 H2-Ob (MGP_SPRETEiJ_G0022357) #13 H2-Ab1 (MGP_SPRETEiJ_G0022358) #14 H2-Aa (MGP_SPRETEiJ_G0022359) #15 MGP_SPRETEiJ_G0022360 #16 H2-Eb2 (MGP_SPRETEiJ_G0022361) #17 Btnl2 (MGP_SPRETEiJ_G0022362) #18 Btnl1 (MGP_SPRETEiJ_G0022363) #19 Tsbp1 (MGP_SPRETEiJ_G0022364) #20 MGP_SPRETEiJ_G0022366 #21 Notch4 (MGP_SPRETEiJ_G0022367) #22 Gpsm3 (MGP_SPRETEiJ_G0022368) #23 Pbx2 (MGP_SPRETEiJ_G0022369) #24 Ager (MGP_SPRETEiJ_G0022370) #25 Rnf5 (MGP_SPRETEiJ_G0022371) #26 Agpat1 (MGP_SPRETEiJ_G0022372) #27 Egfl8 (MGP_SPRETEiJ_G0022373) #28 Ppt2 (MGP_SPRETEiJ_G0022374) #29 Prrt1 (MGP_SPRETEiJ_G0022375) #30 Fkbpl (MGP_SPRETEiJ_G0022376) #31 Atf6b (MGP_SPRETEiJ_G0022377) #32 MGP_SPRETEiJ_G0022378 #33 MGP_SPRETEiJ_G0022379 #34 MGP_SPRETEiJ_G0022380 #35 Dxo (MGP_SPRETEiJ_G0022381) #36 Skic2 (MGP_SPRETEiJ_G0022382) #37 spretus MODERN SPECIES 12 Rnf115 (MGP_SPRETEiJ_G0026338) Cd160 (MGP_SPRETEiJ_G0026339) Pdzk1 (MGP_SPRETEiJ_G0026340) Gpr89 (MGP_SPRETEiJ_G0026341) Gja5 (MGP_SPRETEiJ_G0026342) Gja8 (MGP_SPRETEiJ_G0026343) Acp6 (MGP_SPRETEiJ_G0026344) Bcl9 (MGP_SPRETEiJ_G0026345) Or13l2 (MGP_SPRETEiJ_G0026346) Chd1l (MGP_SPRETEiJ_G0026347) Fmo5 (MGP_SPRETEiJ_G0026348) Prkab2 (MGP_SPRETEiJ_G0026349) MGP_SPRETEiJ_G0026350 Pde4dip (MGP_SPRETEiJ_G0026351) Sec22b (MGP_SPRETEiJ_G0026352) Notch2 (MGP_SPRETEiJ_G0026353) ##22 Adam30 (MGP_SPRETEiJ_G0026354) Reg4 (MGP_SPRETEiJ_G0026355) Hmgcs2 (MGP_SPRETEiJ_G0026356) MGP_SPRETEiJ_G0026357 Zfp697 (MGP_SPRETEiJ_G0026358) MGP_SPRETEiJ_G0026359 MGP_SPRETEiJ_G0026360 MGP_SPRETEiJ_G0026362 MGP_SPRETEiJ_G0026361 Hsd3b2 (MGP_SPRETEiJ_G0026363) Hsd3b3 (MGP_SPRETEiJ_G0026365) Hsd3b1 (MGP_SPRETEiJ_G0026366) Hao2 (MGP_SPRETEiJ_G0026367) Wars2 (MGP_SPRETEiJ_G0026368) Tbx15 (MGP_SPRETEiJ_G0026369) Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 3080 Pdzk1 (ENSMSIG00000021897) Gpr89 (ENSMSIG00000021948) Gja8 (ENSMSIG00000022025) Gja5 (ENSMSIG00000022039) Acp6 (ENSMSIG00000022056) Bcl9 (ENSMSIG00000022077) Or13l2 (ENSMSIG00000022136) ENSMSIG00000022145 Chd1l (ENSMSIG00000022150) Fmo5 (ENSMSIG00000022254) Prkab2 (ENSMSIG00000022299) ENSMSIG00000022326 Pde4dip (ENSMSIG00000022346) Sec22b (ENSMSIG00000022601) ENSMSIG00000022608 Notch2 (ENSMSIG00000022612) #22 Adam30 (ENSMSIG00000022683) Reg4 (ENSMSIG00000022695) Hmgcs2 (ENSMSIG00000022715) ENSMSIG00000022744 Zfp697 (ENSMSIG00000022782) Steppe mouse MODERN SPECIES 1227 Notch4 (ENSMSIG00000007446) #22 Mouse DUPLICATION Mouse MODERN SPECIES 12 Polr3c (ENSMUSG00000028099) Rnf115 (ENSMUSG00000028098) Cd160 (ENSMUSG00000038304) Pdzk1 (ENSMUSG00000038298) Gpr89 (ENSMUSG00000028096) Gja5 (ENSMUSG00000057123) Gja8 (ENSMUSG00000049908) Acp6 (ENSMUSG00000028093) Bcl9 (ENSMUSG00000038256) Or13l2 (ENSMUSG00000051392) Chd1l (ENSMUSG00000028089) Fmo5 (ENSMUSG00000028088) Prkab2 (ENSMUSG00000038205) Pde4dip (ENSMUSG00000038170) Sec22b (ENSMUSG00000027879) Notch2 (ENSMUSG00000027878) #22 Adam30 (ENSMUSG00000043468) Reg4 (ENSMUSG00000027876) Hmgcs2 (ENSMUSG00000027875) Phgdh (ENSMUSG00000053398) Zfp697 (ENSMUSG00000050064) Hsd3b9 (ENSMUSG00000090817) Hsd3b4 (ENSMUSG00000095143) Hsd3b8 (ENSMUSG00000095388) Hsd3b5 (ENSMUSG00000038092) Hsd3b2 (ENSMUSG00000063730) Hsd3b3 (ENSMUSG00000062410) Hsd3b6 (ENSMUSG00000027869) Hsd3b1 (ENSMUSG00000027871) Hao2 (ENSMUSG00000027870) Wars2 (ENSMUSG00000004233) Mouse MODERN SPECIES 8 Psmb9 (ENSMUSG00000096727) #8 Tap1 (ENSMUSG00000037321) #9 Psmb8 (ENSMUSG00000024338) #10 Tap2 (ENSMUSG00000024339) #11 H2-Ob (ENSMUSG00000041538) #13 H2-Ab1 (ENSMUSG00000073421) #14 H2-Aa (ENSMUSG00000036594) #15 H2-Eb1 (ENSMUSG00000060586) #16 H2-Eb2 (ENSMUSG00000067341) #17 H2-Ea (ENSMUSG00000036322) Btnl2 (ENSMUSG00000024340) #18 Btnl1 (ENSMUSG00000062638) #19 Tsbp1 (ENSMUSG00000057246) #20 Btnl4 (ENSMUSG00000058435) #21 Btnl6 (ENSMUSG00000092618) ##21 Notch4 (ENSMUSG00000015468) #22 Gpsm3 (ENSMUSG00000034786) #23 Pbx2 (ENSMUSG00000034673) #24 Ager (ENSMUSG00000015452) #25 Rnf5 (ENSMUSG00000015478) #26 Agpat1 (ENSMUSG00000034254) #27 Egfl8 (ENSMUSG00000015467) #28 Ppt2 (ENSMUSG00000015474) #29 Prrt1 (ENSMUSG00000015476) #30 Fkbpl (ENSMUSG00000033739) #31 Atf6b (ENSMUSG00000015461) #32 Tnxb (ENSMUSG00000033327) C4b (ENSMUSG00000073418) #33 Cyp21a1 (ENSMUSG00000024365) #35 Stk19 (ENSMUSG00000061207) #34 Dxo (ENSMUSG00000040482) #36 Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 12 Cd160 (MGP_CAROLIEiJ_G0025392) Pdzk1 (MGP_CAROLIEiJ_G0025393) Gpr89 (MGP_CAROLIEiJ_G0025394) Gja5 (MGP_CAROLIEiJ_G0025395) Gja8 (MGP_CAROLIEiJ_G0025396) Acp6 (MGP_CAROLIEiJ_G0025397) Bcl9 (MGP_CAROLIEiJ_G0025398) MGP_CAROLIEiJ_G0025399 Or13l2 (MGP_CAROLIEiJ_G0025400) Chd1l (MGP_CAROLIEiJ_G0025401) Fmo5 (MGP_CAROLIEiJ_G0025402) MGP_CAROLIEiJ_G0025403 MGP_CAROLIEiJ_G0025404 Pde4dip (MGP_CAROLIEiJ_G0025405) Sec22b (MGP_CAROLIEiJ_G0025406) Notch2 (MGP_CAROLIEiJ_G0025407) #22 Adam30 (MGP_CAROLIEiJ_G0025408) Reg4 (MGP_CAROLIEiJ_G0025409) Hmgcs2 (MGP_CAROLIEiJ_G0025410) MGP_CAROLIEiJ_G0025411 Zfp697 (MGP_CAROLIEiJ_G0025412) MGP_CAROLIEiJ_G0025413 MGP_CAROLIEiJ_G0025414 Hsd3b1 (MGP_CAROLIEiJ_G0025416) Hao2 (MGP_CAROLIEiJ_G0025417) MGP_CAROLIEiJ_G0025418 Tbx15 (MGP_CAROLIEiJ_G0025419) Spag17 (MGP_CAROLIEiJ_G0025420) Wdr3 (MGP_CAROLIEiJ_G0025421) Gdap2 (MGP_CAROLIEiJ_G0025422) Tent5c (MGP_CAROLIEiJ_G0025423) Ryukyu mouse MODERN SPECIES 8 Psmb9 (MGP_CAROLIEiJ_G0021446) #8 Tap1 (MGP_CAROLIEiJ_G0021447) #9 Psmb8 (MGP_CAROLIEiJ_G0021448) #10 Tap2 (MGP_CAROLIEiJ_G0021449) #11 MGP_CAROLIEiJ_G0021450 #12 H2-Ob (MGP_CAROLIEiJ_G0021451) #13 H2-Ab1 (MGP_CAROLIEiJ_G0021452) #14 H2-Aa (MGP_CAROLIEiJ_G0021453) #15 MGP_CAROLIEiJ_G0021454 #16 H2-Eb2 (MGP_CAROLIEiJ_G0021455) #17 Btnl2 (MGP_CAROLIEiJ_G0021456) #18 Btnl1 (MGP_CAROLIEiJ_G0021457) #19 Tsbp1 (MGP_CAROLIEiJ_G0021458) #20 Btnl6 (MGP_CAROLIEiJ_G0021459) ##21 MGP_CAROLIEiJ_G0021460 #21 Notch4 (MGP_CAROLIEiJ_G0021461) #22 Gpsm3 (MGP_CAROLIEiJ_G0021462) #23 Pbx2 (MGP_CAROLIEiJ_G0021463) #24 Ager (MGP_CAROLIEiJ_G0021464) #25 Rnf5 (MGP_CAROLIEiJ_G0021465) #26 Agpat1 (MGP_CAROLIEiJ_G0021466) #27 Egfl8 (MGP_CAROLIEiJ_G0021467) #28 Ppt2 (MGP_CAROLIEiJ_G0021468) #29 Prrt1 (MGP_CAROLIEiJ_G0021469) #30 Fkbpl (MGP_CAROLIEiJ_G0021470) #31 Atf6b (MGP_CAROLIEiJ_G0021471) #32 Tnxb (MGP_CAROLIEiJ_G0021472) Cyp21a1 (MGP_CAROLIEiJ_G0021473) #35 C4b (MGP_CAROLIEiJ_G0021474) #33 Stk19 (MGP_CAROLIEiJ_G0021475) #34 Dxo (MGP_CAROLIEiJ_G0021476) #36 Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 17 Rnf115 (MGP_PahariEiJ_G0026836) Cd160 (MGP_PahariEiJ_G0026837) Pdzk1 (MGP_PahariEiJ_G0026838) Gpr89 (MGP_PahariEiJ_G0026839) Gja5 (MGP_PahariEiJ_G0026840) Gja8 (MGP_PahariEiJ_G0026841) Acp6 (MGP_PahariEiJ_G0026842) Bcl9 (MGP_PahariEiJ_G0026843) Or13l2 (MGP_PahariEiJ_G0026844) Chd1l (MGP_PahariEiJ_G0026845) Fmo5 (MGP_PahariEiJ_G0026846) MGP_PahariEiJ_G0026847 MGP_PahariEiJ_G0026848 Pde4dip (MGP_PahariEiJ_G0026849) Sec22b (MGP_PahariEiJ_G0026850) Notch2 (MGP_PahariEiJ_G0026851) #22 MGP_PahariEiJ_G0026852 Reg4 (MGP_PahariEiJ_G0026853) Hmgcs2 (MGP_PahariEiJ_G0026854) Phgdh (MGP_PahariEiJ_G0026855) Zfp697 (MGP_PahariEiJ_G0026856) MGP_PahariEiJ_G0026857 MGP_PahariEiJ_G0026858 MGP_PahariEiJ_G0026859 Hsd3b1 (MGP_PahariEiJ_G0026860) Hao2 (MGP_PahariEiJ_G0026861) Wars2 (MGP_PahariEiJ_G0026862) Tbx15 (MGP_PahariEiJ_G0026863) Spag17 (MGP_PahariEiJ_G0026864) Wdr3 (MGP_PahariEiJ_G0026865) Gdap2 (MGP_PahariEiJ_G0026866) Shrew mouse MODERN SPECIES 9 H2-DMa (MGP_PahariEiJ_G0020441) Psmb9 (MGP_PahariEiJ_G0020442) #8 Tap1 (MGP_PahariEiJ_G0020443) #9 Psmb8 (MGP_PahariEiJ_G0020444) #10 Tap2 (MGP_PahariEiJ_G0020445) #11 MGP_PahariEiJ_G0020446 H2-Ob (MGP_PahariEiJ_G0020447) #13 H2-Ab1 (MGP_PahariEiJ_G0020448) #14 H2-Aa (MGP_PahariEiJ_G0020449) #15 MGP_PahariEiJ_G0020450 #16 H2-Eb2 (MGP_PahariEiJ_G0020451) #17 Btnl2 (MGP_PahariEiJ_G0020452) #18 Btnl1 (MGP_PahariEiJ_G0020453) #19 Tsbp1 (MGP_PahariEiJ_G0020454) #20 MGP_PahariEiJ_G0020455 ##21 Notch4 (MGP_PahariEiJ_G0020456) #22 Gpsm3 (MGP_PahariEiJ_G0020457) #23 Pbx2 (MGP_PahariEiJ_G0020458) #24 Ager (MGP_PahariEiJ_G0020459) #25 Agpat1 (MGP_PahariEiJ_G0020461) #27 Egfl8 (MGP_PahariEiJ_G0020462) #28 Ppt2 (MGP_PahariEiJ_G0020463) #29 Prrt1 (MGP_PahariEiJ_G0020464) #30 Fkbpl (MGP_PahariEiJ_G0020465) #31 Atf6b (MGP_PahariEiJ_G0020466) #32 Tnxb (MGP_PahariEiJ_G0020467) Cyp21a1 (MGP_PahariEiJ_G0020468) #35 C4b (MGP_PahariEiJ_G0020469) #33 Stk19 (MGP_PahariEiJ_G0020470) #34 Dxo (MGP_PahariEiJ_G0020471) #36 Skic2 (MGP_PahariEiJ_G0020472) #37 Rat MODERN SPECIES 11 Gpr89b (ENSRNOG00000000095) Gja8 (ENSRNOG00000046703) Gja5 (ENSRNOG00000017484) ENSRNOG00000068655 Rhno1-ps2 (ENSRNOG00000067361) Acp6 (ENSRNOG00000017494) Bcl9 (ENSRNOG00000017516) Rpl38-ps8 (ENSRNOG00000030747) Or13l2 (ENSRNOG00000017664) Chd1l (ENSRNOG00000017669) Fmo5 (ENSRNOG00000018076) Prkab2 (ENSRNOG00000018166) Gm17651 (ENSRNOG00000062826) Pde4dip (ENSRNOG00000018220) Sec22b (ENSRNOG00000018673) Notch2 (ENSRNOG00000018835) #22 Adam30 (ENSRNOG00000019044) Reg4 (ENSRNOG00000019046) Hmgcs2 (ENSRNOG00000019120) Phgdh (ENSRNOG00000019328) Zfp697 (ENSRNOG00000065357) Hsd3b5 (ENSRNOG00000019417) Hsd3b5-ps1 (ENSRNOG00000070670) Hsd3b2 (ENSRNOG00000019441) Hsd3b3 (ENSRNOG00000063905) Hsd3b1 (ENSRNOG00000070622) AABR07012635.1 (ENSRNOG00000053190) Hao2 (ENSRNOG00000019470) LOC120100604 (ENSRNOG00000065447) Wars2 (ENSRNOG00000019508) Tbx15 (ENSRNOG00000019565) Cricetidae ANCESTRAL SPECIES 6 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Cricetinae ANCESTRAL SPECIES 12 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Chinese hamster chok1gshd MODERN SPECIES 66 ENSCGRG00001005229 Gpr89 (ENSCGRG00001010733) Gja8 (ENSCGRG00001004099) Gja5 (ENSCGRG00001005163) Acp6 (ENSCGRG00001024205) Bcl9 (ENSCGRG00001021508) ENSCGRG00001015976 ENSCGRG00001012037 ENSCGRG00001003668 ENSCGRG00001009212 Chd1l (ENSCGRG00001021624) Fmo5 (ENSCGRG00001013887) Prkab2 (ENSCGRG00001018736) Pde4dip (ENSCGRG00001021057) Sec22b (ENSCGRG00001021908) Notch2 (ENSCGRG00001014398) #22 Adam30 (ENSCGRG00001009068) Reg4 (ENSCGRG00001000234) Hmgcs2 (ENSCGRG00001020820) ENSCGRG00001015588 Zfp697 (ENSCGRG00001008232) ENSCGRG00001019902 ENSCGRG00001013270 ENSCGRG00001023014 Hao2 (ENSCGRG00001020203) Wars2 (ENSCGRG00001018718) Tbx15 (ENSCGRG00001024224) Spag17 (ENSCGRG00001013560) Wdr3 (ENSCGRG00001019544) Gdap2 (ENSCGRG00001012369) Tent5c (ENSCGRG00001005586) Golden Hamster DUPLICATION Golden Hamster MODERN SPECIES 782 Rnf115 (ENSMAUG00000010619) Cd160 (ENSMAUG00000020080) Pdzk1 (ENSMAUG00000009842) Gpr89 (ENSMAUG00000010582) Gja8 (ENSMAUG00000004556) Gja5 (ENSMAUG00000016597) Acp6 (ENSMAUG00000009766) Bcl9 (ENSMAUG00000020639) Or13l2 (ENSMAUG00000014748) ENSMAUG00000004712 ENSMAUG00000009168 Fmo5 (ENSMAUG00000021078) Prkab2 (ENSMAUG00000015207) Pde4dip (ENSMAUG00000002671) Sec22b (ENSMAUG00000016258) Notch2 (ENSMAUG00000016544) #22 Reg4 (ENSMAUG00000006229) Hmgcs2 (ENSMAUG00000019983) Phgdh (ENSMAUG00000014304) Zfp697 (ENSMAUG00000014216) ENSMAUG00000013562 Golden Hamster MODERN SPECIES 856 Brd2 (ENSMAUG00000006799) H2-DMa (ENSMAUG00000000861) ENSMAUG00000008923 #7 Psmb9 (ENSMAUG00000007584) #8 Tap1 (ENSMAUG00000017718) #9 Psmb8 (ENSMAUG00000003396) #10 Tap2 (ENSMAUG00000015081) #11 H2-Ob (ENSMAUG00000007698) #13 H2-Ab1 (ENSMAUG00000020395) #14 H2-Aa (ENSMAUG00000003363) #15 H2-Eb2 (ENSMAUG00000018151) #17 Btnl2 (ENSMAUG00000003530) #18 Btnl1 (ENSMAUG00000016817) #19 ENSMAUG00000015609 #21 ENSMAUG00000009410 Notch4 (ENSMAUG00000015895) #22 Gpsm3 (ENSMAUG00000013374) #23 Pbx2 (ENSMAUG00000003275) #24 Ager (ENSMAUG00000001006) #25 Rnf5 (ENSMAUG00000000684) #26 Agpat1 (ENSMAUG00000011278) #27 Egfl8 (ENSMAUG00000013647) #28 Ppt2 (ENSMAUG00000010078) #29 ENSMAUG00000019956 #30 ENSMAUG00000014704 Tnxb (ENSMAUG00000019386) Cyp21a1 (ENSMAUG00000022007) #35 C4b (ENSMAUG00000015130) #33 Dxo (ENSMAUG00000022102) #36 Skic2 (ENSMAUG00000018613) #37 Nelfe (ENSMAUG00000016812) Cricetidae_B ANCESTRAL SPECIES 3 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.b ENSGT00940000155444.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Northern American deer mouse DUPLICATION Northern American deer mouse MODERN SPECIES 19 Cd160 (ENSPEMG00000013087) Gpr89 (ENSPEMG00000000972) Gja8 (ENSPEMG00000006825) ENSPEMG00000026655 Gja5 (ENSPEMG00000030601) Acp6 (ENSPEMG00000008867) Bcl9 (ENSPEMG00000018207) ENSPEMG00000024540 ENSPEMG00000025256 Chd1l (ENSPEMG00000013528) Fmo5 (ENSPEMG00000010918) Prkab2 (ENSPEMG00000025683) ENSPEMG00000028867 Pde4dip (ENSPEMG00000014907) Sec22b (ENSPEMG00000028857) Notch2 (ENSPEMG00000009366) #22 Adam30 (ENSPEMG00000026187) Reg4 (ENSPEMG00000014392) Hmgcs2 (ENSPEMG00000004811) Phgdh (ENSPEMG00000004948) Zfp697 (ENSPEMG00000025468) ENSPEMG00000026521 Hao2 (ENSPEMG00000000115) ENSPEMG00000027797 ENSPEMG00000025075 ENSPEMG00000027699 ENSPEMG00000024697 ENSPEMG00000018152 Tbx15 (ENSPEMG00000026645) Spag17 (ENSPEMG00000012291) Wdr3 (ENSPEMG00000011928) Northern American deer mouse MODERN SPECIES 13 Tap2 (ENSPEMG00000010503) #11 H2-Ob (ENSPEMG00000001796) #13 ENSPEMG00000012719 #14 ENSPEMG00000007095 #15 ENSPEMG00000015401 #14 ENSPEMG00000012679 #15 H2-Eb1 (ENSPEMG00000002889) #16 H2-Eb2 (ENSPEMG00000006456) #17 H2-Ea (ENSPEMG00000008261) Btnl2 (ENSPEMG00000007431) #18 Btnl1 (ENSPEMG00000008094) #19 ENSPEMG00000028515 ##17 ENSPEMG00000011748 #21 ENSPEMG00000026840 #21 ENSPEMG00000026496 #21 Notch4 (ENSPEMG00000015181) #22 Gpsm3 (ENSPEMG00000011576) #23 Pbx2 (ENSPEMG00000017872) #24 Ager (ENSPEMG00000013952) #25 Rnf5 (ENSPEMG00000028952) #26 Agpat1 (ENSPEMG00000016710) #27 Egfl8 (ENSPEMG00000001405) #28 Ppt2 (ENSPEMG00000008644) #29 Prrt1 (ENSPEMG00000016595) #30 Fkbpl (ENSPEMG00000017009) #31 Atf6b (ENSPEMG00000019061) #32 Tnxb (ENSPEMG00000004596) Cyp21a1 (ENSPEMG00000014963) #35 Dxo (ENSPEMG00000009229) #36 Stk19 (ENSPEMG00000015476) #34 Skic2 (ENSPEMG00000019001) #37 Prairie vole DUPLICATION Prairie vole MODERN SPECIES 8 Nudt17 (ENSMOCG00000001212) Polr3c (ENSMOCG00000000997) Rnf115 (ENSMOCG00000019619) Cd160 (ENSMOCG00000021710) Pdzk1 (ENSMOCG00000004696) Gpr89 (ENSMOCG00000005315) Gja8 (ENSMOCG00000009290) Gja5 (ENSMOCG00000019445) Acp6 (ENSMOCG00000021116) Bcl9 (ENSMOCG00000002460) Chd1l (ENSMOCG00000006305) Fmo5 (ENSMOCG00000016787) Prkab2 (ENSMOCG00000017982) Pde4dip (ENSMOCG00000015898) Sec22b (ENSMOCG00000016265) Notch2 (ENSMOCG00000017629) #22 Hmgcs2 (ENSMOCG00000012622) ENSMOCG00000019393 Zfp697 (ENSMOCG00000021360) ENSMOCG00000019719 ENSMOCG00000020634 ENSMOCG00000020989 Wars2 (ENSMOCG00000005144) Tbx15 (ENSMOCG00000012596) ENSMOCG00000009935 Spag17 (ENSMOCG00000001590) Wdr3 (ENSMOCG00000014361) Gdap2 (ENSMOCG00000011700) Tent5c (ENSMOCG00000018840) Man1a2 (ENSMOCG00000020901) Vtcn1 (ENSMOCG00000000748) Prairie vole MODERN SPECIES 170 Notch4 (ENSMOCG00000018348) #22 ENSMOCG00000006532 #23 Pbx2 (ENSMOCG00000002031) #24 Ager (ENSMOCG00000022815) #25 Rnf5 (ENSMOCG00000022045) #26 Agpat1 (ENSMOCG00000019018) #27 Egfl8 (ENSMOCG00000008165) #28 Ppt2 (ENSMOCG00000012081) #29 Prrt1 (ENSMOCG00000019137) #30 Fkbpl (ENSMOCG00000005479) #31 ENSMOCG00000000322 Tnxb (ENSMOCG00000010394) Cyp21a1 (ENSMOCG00000016151) #35 Stk19 (ENSMOCG00000021590) #34 Dxo (ENSMOCG00000005928) #36 Skic2 (ENSMOCG00000014240) #37 Upper Galilee mountains blind mole rat MODERN SPECIES 713 Prkab2 (ENSNGAG00000011301) Pde4dip (ENSNGAG00000011730) Sec22b (ENSNGAG00000018424) Notch2 (ENSNGAG00000000332) #22 Reg4 (ENSNGAG00000007946) Hmgcs2 (ENSNGAG00000010114) Phgdh (ENSNGAG00000010766) Zfp697 (ENSNGAG00000019367) ENSNGAG00000019968 Lesser Egyptian jerboa MODERN SPECIES 69 Pias3 (ENSJJAG00000020778) Nudt17 (ENSJJAG00000018335) Polr3c (ENSJJAG00000011447) Rnf115 (ENSJJAG00000007841) ENSJJAG00000000868 Gpr89 (ENSJJAG00000020361) Gja8 (ENSJJAG00000013389) Gja5 (ENSJJAG00000009810) ENSJJAG00000021945 Bcl9 (ENSJJAG00000020720) ENSJJAG00000023016 Fmo5 (ENSJJAG00000018621) Prkab2 (ENSJJAG00000023668) ENSJJAG00000019713 ENSJJAG00000010827 Notch2 (ENSJJAG00000013302) #22 Reg4 (ENSJJAG00000000579) ENSJJAG00000017734 Phgdh (ENSJJAG00000014448) Zfp697 (ENSJJAG00000017598) Rtca (ENSJJAG00000016178) Cdc14a (ENSJJAG00000022290) Gpr88 (ENSJJAG00000012613) Vcam1 (ENSJJAG00000015695) Extl2 (ENSJJAG00000014735) Slc30a7 (ENSJJAG00000002926) Dph5 (ENSJJAG00000008927) ENSJJAG00000019910 S1pr1 (ENSJJAG00000010551) Olfm3 (ENSJJAG00000010747) Col11a1 (ENSJJAG00000018420) Kangaroo rat MODERN SPECIES 358 Ankrd35 (ENSDORG00000001803) Pias3 (ENSDORG00000013427) Polr3c (ENSDORG00000013430) Rnf115 (ENSDORG00000007839) ENSDORG00000008399 Gpr89 (ENSDORG00000023702) Gja8 (ENSDORG00000000930) ENSDORG00000016000 Bcl9 (ENSDORG00000003296) Chd1l (ENSDORG00000013555) ENSDORG00000001332 ENSDORG00000000256 Prkab2 (ENSDORG00000027473) ENSDORG00000024515 Sec22b (ENSDORG00000023311) Notch2 (ENSDORG00000001171) #22 Reg4 (ENSDORG00000009271) Hmgcs2 (ENSDORG00000008532) Phgdh (ENSDORG00000008531) Clca1 (ENSDORG00000008434) Clca2 (ENSDORG00000009200) Odf2l (ENSDORG00000009195) ENSDORG00000015616 Znhit6 (ENSDORG00000029755) Ccn1 (ENSDORG00000005602) Ddah1 (ENSDORG00000013259) ENSDORG00000028780 2410004B18Rik (ENSDORG00000012509) Syde2 (ENSDORG00000005799) Dnai3 (ENSDORG00000015030) Mcoln3 (ENSDORG00000014635) Rodentia_A ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Sciuridae ANCESTRAL SPECIES ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000155444.l ENSGT00940000155444.k ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000159284 ENSGT00940000160493.m ENSGT00940000159402 ENSGT00730000110915.b ENSGT00940000158408 ENSGT01050000244864.C ENSGT01090000260658 ENSGT01050000244864.D ENSGT00390000000684 ENSGT00950000182849.A.f.b ENSGT00390000007258 ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 Eurasian red squirrel MODERN SPECIES ENSSVLG00005001591 TBX15 (ENSSVLG00005001632) WARS2 (ENSSVLG00005001663) HAO2 (ENSSVLG00005001685) ENSSVLG00005001708 ENSSVLG00005001762 ENSSVLG00005001914 ENSSVLG00005001978 ZNF697 (ENSSVLG00005001991) PHGDH (ENSSVLG00005002011) HMGCS2 (ENSSVLG00005002058) REG4 (ENSSVLG00005002100) ENSSVLG00005002128 PDE4DIP (ENSSVLG00005002435) SEC22B (ENSSVLG00005003320) NOTCH2 (ENSSVLG00005003351) #22 ADAM30 (ENSSVLG00005003444) ENSSVLG00005003464 ENSSVLG00005003488 CHD1L (ENSSVLG00005003586) ENSSVLG00005003748 ENSSVLG00005003761 ENSSVLG00005003766 ENSSVLG00005003777 BCL9 (ENSSVLG00005003796) ACP6 (ENSSVLG00005003822) GJA5 (ENSSVLG00005003855) GJA8 (ENSSVLG00005003866) ENSSVLG00005003882 ENSSVLG00005003919 CD160 (ENSSVLG00005003958) Marmotini ANCESTRAL SPECIES 150 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 Alpin marmot MODERN SPECIES 100 ENSMMMG00000019535 ENSMMMG00000019542 ENSMMMG00000019548 ENSMMMG00000019553 ENSMMMG00000019587 SEC22B (ENSMMMG00000019593) NOTCH2 (ENSMMMG00000019606) #22 ADAM30 (ENSMMMG00000020130) ENSMMMG00000020131 ENSMMMG00000020133 FMO5 (ENSMMMG00000020138) PRKAB2 (ENSMMMG00000020148) HENMT1 (ENSMMMG00000020160) ENSMMMG00000020187 FNDC7 (ENSMMMG00000020200) STXBP3 (ENSMMMG00000020247) ENSMMMG00000020273 GPSM2 (ENSMMMG00000020281) CLCC1 (ENSMMMG00000020289) WDR47 (ENSMMMG00000020303) ENSMMMG00000020316 TMEM167B (ENSMMMG00000020323) Marmotini_b ANCESTRAL SPECIES 326 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 Squirrel MODERN SPECIES 471 ENSSTOG00000023822 SEC22B (ENSSTOG00000023607) NOTCH2 (ENSSTOG00000004634) #22 ENSSTOG00000030179 Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 904 NOTCH2 (ENSUPAG00010023780) #22 ENSUPAG00010023776 ADAM30 (ENSUPAG00010023774) Arctic ground squirrel MODERN SPECIES 662 ENSUPAG00010019600 #22 GPSM3 (ENSUPAG00010019618) #23 PBX2 (ENSUPAG00010019624) #24 AGER (ENSUPAG00010019649) #25 RNF5 (ENSUPAG00010019671) #26 AGPAT1 (ENSUPAG00010019676) #27 EGFL8 (ENSUPAG00010019691) #28 PPT2 (ENSUPAG00010019699) #29 PRRT1 (ENSUPAG00010019711) #30 FKBPL (ENSUPAG00010019716) #31 ATF6B (ENSUPAG00010019718) #32 ENSUPAG00010019727 ENSUPAG00010019731 CYP21A2 (ENSUPAG00010019746) #35 ENSUPAG00010019979 #33 STK19 (ENSUPAG00010019994) #34 Hystricomorpha ANCESTRAL SPECIES 23 ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A.i ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Naked mole-rat female MODERN SPECIES 10 ENSHGLG00000043134 ENSHGLG00000004803 BCL9 (ENSHGLG00000013904) ENSHGLG00000034080 ENSHGLG00000048596 ENSHGLG00000018478 CHD1L (ENSHGLG00000008933) ENSHGLG00000038214 ENSHGLG00000037846 ENSHGLG00000039288 ENSHGLG00000005182 ENSHGLG00000033772 ENSHGLG00000001174 ENSHGLG00000004729 ENSHGLG00000016365 ENSHGLG00000015205 #22 ENSHGLG00000049042 ENSHGLG00000042386 ENSHGLG00000006464 HSD3B1 (ENSHGLG00000033840) ENSHGLG00000042619 ENSHGLG00000038215 TBX15 (ENSHGLG00000050081) ENSHGLG00000032534 SPAG17 (ENSHGLG00000009162) WDR3 (ENSHGLG00000017936) ENSHGLG00000017537 ENSHGLG00000041120 FAM46C (ENSHGLG00000043157) MAN1A2 (ENSHGLG00000017646) ENSHGLG00000045985 Hystricomorpha_a ANCESTRAL SPECIES 14 ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A.i ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Guinea pig DUPLICATION Guinea pig MODERN SPECIES 2 PIAS3 (ENSCPOG00000002771) POLR3C (ENSCPOG00000004654) RNF115 (ENSCPOG00000024517) PDZK1 (ENSCPOG00000005364) ENSCPOG00000008390 GJA8 (ENSCPOG00000019781) GJA5 (ENSCPOG00000008219) ACP6 (ENSCPOG00000012209) BCL9 (ENSCPOG00000012202) ENSCPOG00000022795 CHD1L (ENSCPOG00000009000) Fmo5 (ENSCPOG00000013868) PRKAB2 (ENSCPOG00000033400) ENSCPOG00000007934 SEC22B (ENSCPOG00000031768) NOTCH2 (ENSCPOG00000015738) #22 REG4 (ENSCPOG00000025637) HMGCS2 (ENSCPOG00000006339) PHGDH (ENSCPOG00000006732) ZNF697 (ENSCPOG00000033846) ENSCPOG00000008386 ENSCPOG00000033437 ENSCPOG00000001451 WARS2 (ENSCPOG00000000616) TBX15 (ENSCPOG00000000615) SPAG17 (ENSCPOG00000011317) WDR3 (ENSCPOG00000011305) GDAP2 (ENSCPOG00000012599) TENT5C (ENSCPOG00000035573) MAN1A2 (ENSCPOG00000004935) VTCN1 (ENSCPOG00000034001) Guinea pig MODERN SPECIES 15 HLA-DMA (ENSCPOG00000015044) HLA-DMB (ENSCPOG00000002810) #7 PSMB9 (ENSCPOG00000002121) #8 TAP1 (ENSCPOG00000026988) #9 PSMB8 (ENSCPOG00000000729) #10 TAP2 (ENSCPOG00000038951) #11 HLA-DOB (ENSCPOG00000033895) #13 HLA-DQB2 (ENSCPOG00000038606) #14 ENSCPOG00000014463 ENSCPOG00000040083 ##17 ENSCPOG00000003574 ##17 ENSCPOG00000036465 #16 HLA-DRA (ENSCPOG00000012309) BTNL2 (ENSCPOG00000004277) #18 ENSCPOG00000023019 #19 ENSCPOG00000000591 #22 PBX2 (ENSCPOG00000037281) #24 AGER (ENSCPOG00000000590) #25 RNF5 (ENSCPOG00000030132) #26 AGPAT1 (ENSCPOG00000037644) #27 EGFL8 (ENSCPOG00000040046) #28 PPT2 (ENSCPOG00000038246) #29 ENSCPOG00000039598 #30 FKBPL (ENSCPOG00000039771) #31 ATF6B (ENSCPOG00000023551) #32 TNXB (ENSCPOG00000021313) ENSCPOG00000002716 #35 ENSCPOG00000025944 ENSCPOG00000031422 #33 STK19 (ENSCPOG00000020451) #34 DXO (ENSCPOG00000015108) #36 Hystricomorpha_b ANCESTRAL SPECIES 6 ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444.g.a ENSGT00940000155444.h ENSGT00390000018717.b.a.b ENSGT00940000153724.A.i ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Long-tailed chinchilla MODERN SPECIES 275 RNF115 (ENSCLAG00000000561) PDZK1 (ENSCLAG00000000212) ENSCLAG00000000463 GJA8 (ENSCLAG00000017420) GJA5 (ENSCLAG00000000616) ENSCLAG00000000638 ACP6 (ENSCLAG00000000662) BCL9 (ENSCLAG00000000718) ENSCLAG00000000734 ENSCLAG00000000754 CHD1L (ENSCLAG00000000880) FMO5 (ENSCLAG00000000948) PRKAB2 (ENSCLAG00000000963) PDE4DIP (ENSCLAG00000000622) SEC22B (ENSCLAG00000000410) NOTCH2 (ENSCLAG00000000609) #22 Degu MODERN SPECIES 298 CHD1L (ENSODEG00000002494) FMO5 (ENSODEG00000001670) PRKAB2 (ENSODEG00000001559) PDE4DIP (ENSODEG00000001415) ENSODEG00000001721 NOTCH2 (ENSODEG00000000797) #22 ENSODEG00000000653 ENSODEG00000000642 REG4 (ENSODEG00000000629) HMGCS2 (ENSODEG00000000553) PHGDH (ENSODEG00000001506) ZNF697 (ENSODEG00000001481) ENSODEG00000001464 ENSODEG00000018670 ENSODEG00000001448 ENSODEG00000001440 HAO2 (ENSODEG00000001256) ENSODEG00000001240 ENSODEG00000001230 ENSODEG00000018671 WARS2 (ENSODEG00000001212) Lagomorpha ANCESTRAL SPECIES 1 ENSGT00940000158856 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000155444 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000162954 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000159402 ENSGT01100000263570.B ENSGT00730000110915.b ENSGT00940000158408 ENSGT01050000244864.C ENSGT01050000244864.D ENSGT00390000000684 ENSGT00950000182849.A.f.b ENSGT00390000007258 ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a Rabbit DUPLICATION Rabbit MODERN SPECIES 4 ENSOCUG00000027717 GDAP2 (ENSOCUG00000007568) WDR3 (ENSOCUG00000007572) SPAG17 (ENSOCUG00000007586) TBX15 (ENSOCUG00000012320) WARS2 (ENSOCUG00000012330) HAO2 (ENSOCUG00000017949) ENSOCUG00000004132 ZNF697 (ENSOCUG00000014070) PHGDH (ENSOCUG00000005759) HMGCS2 (ENSOCUG00000005767) ENSOCUG00000005773 ADAM30 (ENSOCUG00000013791) PDE4DIP (ENSOCUG00000011228) SEC22B (ENSOCUG00000026877) NOTCH2 (ENSOCUG00000016565) #22 PRKAB2 (ENSOCUG00000009325) FMO5 (ENSOCUG00000009330) CHD1L (ENSOCUG00000009336) ENSOCUG00000027286 BCL9 (ENSOCUG00000012143) ACP6 (ENSOCUG00000000444) GJA5 (ENSOCUG00000016576) GJA8 (ENSOCUG00000002957) ENSOCUG00000030987 ENSOCUG00000002960 ENSOCUG00000024935 ENSOCUG00000030350 ENSOCUG00000003055 POLR3C (ENSOCUG00000003050) PIAS3 (ENSOCUG00000026198) Rabbit MODERN SPECIES 3 ENSOCUG00000025180 OR5V1 (ENSOCUG00000001694) OR12D3 (ENSOCUG00000017472) OR14J1 (ENSOCUG00000007254) ENSOCUG00000011394 ENSOCUG00000028081 ENSOCUG00000013888 ENSOCUG00000023234 ENSOCUG00000023168 ENSOCUG00000035376 ENSOCUG00000003376 ENSOCUG00000031621 ENSOCUG00000006652 ENSOCUG00000026944 #21 ENSOCUG00000024509 #21 ENSOCUG00000016445 #22 GPSM3 (ENSOCUG00000031273) #23 PBX2 (ENSOCUG00000016439) #24 AGER (ENSOCUG00000016426) #25 RNF5 (ENSOCUG00000016417) #26 AGPAT1 (ENSOCUG00000005498) #27 EGFL8 (ENSOCUG00000026919) #28 PPT2 (ENSOCUG00000005492) #29 ENSOCUG00000005485 #30 FKBPL (ENSOCUG00000006245) #31 ATF6B (ENSOCUG00000023089) #32 ENSOCUG00000038853 ENSOCUG00000007056 CYP21A2 (ENSOCUG00000007053) #35 ENSOCUG00000007039 #33 STK19 (ENSOCUG00000037205) #34 Pika DUPLICATION Pika MODERN SPECIES 1259 NOTCH2 (ENSOPRG00000007177) #22 Pika MODERN SPECIES 4586 ENSOPRG00000001275 #22 ENSOPRG00000001255 #27 Tree shrew MODERN SPECIES 1540 NOTCH2 (ENSTBEG00000017705) #22 Primates ANCESTRAL SPECIES 4 ENSGT00420000029746.e.a.b.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Strepsirrhini ANCESTRAL SPECIES ENSGT00940000158856 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000155444 ENSGT00940000161374 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000159402 ENSGT00730000110915.b ENSGT00940000158408 ENSGT01050000244864.C ENSGT01050000244864.D ENSGT00390000000684 ENSGT00950000182849.A.f.b ENSGT00390000007258 ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a Lemuriformes ANCESTRAL SPECIES ENSGT00940000157498 ENSGT00940000158856 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000161374 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000159402 ENSGT00730000110915.b ENSGT00940000158408 ENSGT01050000244864.C ENSGT01050000244864.D ENSGT00390000000684 ENSGT00950000182849.A.f.b ENSGT00390000007258 ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a Mouse lemur MODERN SPECIES 11 TENT5C (ENSMICG00000001773) GDAP2 (ENSMICG00000001775) WDR3 (ENSMICG00000001783) SPAG17 (ENSMICG00000001795) TBX15 (ENSMICG00000048122) WARS2 (ENSMICG00000026450) HAO2 (ENSMICG00000030575) ENSMICG00000027917 ZNF697 (ENSMICG00000046814) PHGDH (ENSMICG00000004462) HMGCS2 (ENSMICG00000004472) REG4 (ENSMICG00000004480) PDE4DIP (ENSMICG00000006770) ENSMICG00000041490 SEC22B (ENSMICG00000027609) NOTCH2 (ENSMICG00000016769) #22 PRKAB2 (ENSMICG00000002483) FMO5 (ENSMICG00000002485) CHD1L (ENSMICG00000002497) BCL9 (ENSMICG00000038350) ACP6 (ENSMICG00000005556) ENSMICG00000005562 PDZK1 (ENSMICG00000038001) ENSMICG00000028695 CD160 (ENSMICG00000038733) RNF115 (ENSMICG00000044821) POLR3C (ENSMICG00000034253) NUDT17 (ENSMICG00000031177) PIAS3 (ENSMICG00000033732) ANKRD35 (ENSMICG00000028514) ITGA10 (ENSMICG00000036050) Lemuriformes_a ANCESTRAL SPECIES 31 ENSGT00940000157498 ENSGT00940000158856 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000161374 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000159402 ENSGT00730000110915.b ENSGT00940000158408 ENSGT01050000244864.C ENSGT01050000244864.D ENSGT00390000000684 ENSGT00950000182849.A.f.b ENSGT00390000007258 ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a Coquerels sifaka MODERN SPECIES 285 ENSPCOG00000011579 SPAG17 (ENSPCOG00000023855) TBX15 (ENSPCOG00000000115) WARS2 (ENSPCOG00000026406) HAO2 (ENSPCOG00000022355) ENSPCOG00000016500 ZNF697 (ENSPCOG00000022280) PHGDH (ENSPCOG00000015198) ENSPCOG00000025200 HMGCS2 (ENSPCOG00000027434) REG4 (ENSPCOG00000018461) PDE4DIP (ENSPCOG00000015883) ENSPCOG00000014195 ENSPCOG00000011997 SEC22B (ENSPCOG00000014218) NOTCH2 (ENSPCOG00000009637) #22 PRKAB2 (ENSPCOG00000014742) FMO5 (ENSPCOG00000021948) CHD1L (ENSPCOG00000023924) ENSPCOG00000018579 ENSPCOG00000027985 BCL9 (ENSPCOG00000016470) ACP6 (ENSPCOG00000000088) ENSPCOG00000018085 GJA8 (ENSPCOG00000017237) ENSPCOG00000026855 PDZK1 (ENSPCOG00000017661) CD160 (ENSPCOG00000021195) RNF115 (ENSPCOG00000025202) POLR3C (ENSPCOG00000024937) NUDT17 (ENSPCOG00000027998) Greater bamboo lemur MODERN SPECIES 195 NOTCH2 (ENSPSMG00000014146) #22 ADAM30 (ENSPSMG00000014073) PRKAB2 (ENSPSMG00000014030) FMO5 (ENSPSMG00000013977) CHD1L (ENSPSMG00000013817) ENSPSMG00000013618 BCL9 (ENSPSMG00000013606) ACP6 (ENSPSMG00000013564) GJA5 (ENSPSMG00000013497) GJA8 (ENSPSMG00000013496) ENSPSMG00000013481 PDZK1 (ENSPSMG00000013455) CD160 (ENSPSMG00000013433) RNF115 (ENSPSMG00000013416) POLR3C (ENSPSMG00000013402) NUDT17 (ENSPSMG00000013359) Bushbaby MODERN SPECIES 188 MAN1A2 (ENSOGAG00000003687) ENSOGAG00000028154 TENT5C (ENSOGAG00000033246) GDAP2 (ENSOGAG00000007395) WDR3 (ENSOGAG00000007399) SPAG17 (ENSOGAG00000007408) TBX15 (ENSOGAG00000007282) WARS2 (ENSOGAG00000007285) HAO2 (ENSOGAG00000015232) ENSOGAG00000032658 ZNF697 (ENSOGAG00000031708) PHGDH (ENSOGAG00000002736) HMGCS2 (ENSOGAG00000000816) PDE4DIP (ENSOGAG00000015829) SEC22B (ENSOGAG00000034815) NOTCH2 (ENSOGAG00000015075) #22 ADAM30 (ENSOGAG00000029766) PRKAB2 (ENSOGAG00000012807) FMO5 (ENSOGAG00000012809) CHD1L (ENSOGAG00000008775) BCL9 (ENSOGAG00000003597) ACP6 (ENSOGAG00000003598) GJA5 (ENSOGAG00000024557) GJA8 (ENSOGAG00000024601) ENSOGAG00000003605 PDZK1 (ENSOGAG00000028874) CD160 (ENSOGAG00000027280) RNF115 (ENSOGAG00000000210) POLR3C (ENSOGAG00000000209) NUDT17 (ENSOGAG00000000208) PIAS3 (ENSOGAG00000000207) Haplorrhini ANCESTRAL SPECIES 1 ENSGT00420000029746.e.a.b.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Tarsier MODERN SPECIES 1627 SEC22B (ENSTSYG00000030487) NOTCH2 (ENSTSYG00000012723) #22 Simiiformes ANCESTRAL SPECIES 3 ENSGT00420000029746.e.a.b.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Catarrhini ANCESTRAL SPECIES 3 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 Hominoidea ANCESTRAL SPECIES 3 ENSGT00420000029746.e.a.b.a.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.d ENSGT00940000161374.a.a.c ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A Hominidae ANCESTRAL SPECIES 3 ENSGT00420000029746.e.a.b.a.a.a.a.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.d ENSGT00940000161374.a.a.c ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A Homo/Pan/Gorilla group ANCESTRAL SPECIES 3 ENSGT00420000029746.e.a.b.a.a.a.a.a.c.a.a ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.d ENSGT00940000161374.a.a.c ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00890000139472.a.b ENSGT00940000153724.A Gorilla MODERN SPECIES RBM8A (ENSGGOG00000037248) LIX1L (ENSGGOG00000005408) ANKRD34A (ENSGGOG00000026080) POLR3GL (ENSGGOG00000011848) TXNIP (ENSGGOG00000011838) HJV (ENSGGOG00000004941) ENSGGOG00000016905 ENSGGOG00000041877 ENSGGOG00000005721 ENSGGOG00000040778 ENSGGOG00000038304 ENSGGOG00000037577 ENSGGOG00000024499 ENSGGOG00000041518 ENSGGOG00000037054 NOTCH2 (ENSGGOG00000004007) #22 ADAM30 (ENSGGOG00000004006) ENSGGOG00000043775 REG4 (ENSGGOG00000000553) HMGCS2 (ENSGGOG00000010293) PHGDH (ENSGGOG00000010284) ZNF697 (ENSGGOG00000006415) ENSGGOG00000041320 HSD3B1 (ENSGGOG00000003349) HSD3B2 (ENSGGOG00000041410) HAO2 (ENSGGOG00000009209) ENSGGOG00000026106 WARS2 (ENSGGOG00000015028) TBX15 (ENSGGOG00000013468) ENSGGOG00000043257 SPAG17 (ENSGGOG00000012975) Homo/Pan group ANCESTRAL SPECIES 4 ENSGT00420000029746.e.a.b.a.a.a.a.a.c.a.a ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.d ENSGT00940000161374.a.a.c ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00890000139472.a.b ENSGT00940000153724.A ENSGT00940000159013 Human MODERN SPECIES PPIAL4D (ENSG00000289549) FAM72D (ENSG00000215784) SRGAP2B (ENSG00000196369) PPIAL4F (ENSG00000279782) NBPF15 (ENSG00000266338) PPIAL4E (ENSG00000271567) FAM72C (ENSG00000263513) H3-7 (ENSG00000273213) SRGAP2C (ENSG00000171943) FAM72B (ENSG00000188610) PPIAL4A (ENSG00000263353) NBPF26 (ENSG00000273136) NOTCH2NLR (ENSG00000286106) NBPF8 (ENSG00000270231) SEC22B (ENSG00000265808) NOTCH2 (ENSG00000134250) #22 ADAM30 (ENSG00000134249) REG4 (ENSG00000134193) HMGCS2 (ENSG00000134240) PHGDH (ENSG00000092621) ZNF697 (ENSG00000143067) HSD3B1 (ENSG00000203857) HSD3B2 (ENSG00000203859) HAO2 (ENSG00000116882) WARS2 (ENSG00000116874) TBX15 (ENSG00000092607) SPAG17 (ENSG00000155761) WDR3 (ENSG00000065183) GDAP2 (ENSG00000196505) TENT5C (ENSG00000183508) MAN1A2 (ENSG00000198162) Pan ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000002799 ENSGT00390000013847 ENSGT01030000234539.a.a.b.a.a ENSGT00530000063074.a ENSGT00940000158423 ENSGT00390000014273.b ENSGT00910000145379 ENSGT00730000111185 ENSGT00390000005869.a ENSGT00390000012355.B.b ENSGT01060000248645 ENSGT00950000183112.b.b ENSGT00940000156349 ENSGT00950000183190.a.a.b ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000153664.A.a.n.o.b ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.d ENSGT00940000161374.a.a.c ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00890000139472.a.b Bonobo MODERN SPECIES ENSPPAG00000028616 PDZK1 (ENSPPAG00000028582) ENSPPAG00000032554 RNF115 (ENSPPAG00000029660) POLR3C (ENSPPAG00000025184) ENSPPAG00000027830 PIAS3 (ENSPPAG00000031223) ANKRD35 (ENSPPAG00000041528) ITGA10 (ENSPPAG00000030681) PEX11B (ENSPPAG00000024465) ENSPPAG00000007658 RBM8A (ENSPPAG00000029116) LIX1L (ENSPPAG00000039345) POLR3GL (ENSPPAG00000034291) HJV (ENSPPAG00000040458) NOTCH2 (ENSPPAG00000030139) #22 ADAM30 (ENSPPAG00000029925) ENSPPAG00000037673 ENSPPAG00000040281 REG4 (ENSPPAG00000042890) HMGCS2 (ENSPPAG00000033384) PHGDH (ENSPPAG00000040285) ENSPPAG00000040843 ENSPPAG00000029728 HSD3B1 (ENSPPAG00000028838) ENSPPAG00000040984 ENSPPAG00000028516 HSD3B2 (ENSPPAG00000039150) HAO2 (ENSPPAG00000027354) WARS2 (ENSPPAG00000032746) ENSPPAG00000027227 Chimpanzee MODERN SPECIES PIAS3 (ENSPTRG00000001206) ANKRD35 (ENSPTRG00000022831) ITGA10 (ENSPTRG00000001204) PEX11B (ENSPTRG00000001203) ENSPTRG00000001202 RBM8A (ENSPTRG00000001201) LIX1L (ENSPTRG00000001200) ANKRD34A (ENSPTRG00000001199) POLR3GL (ENSPTRG00000001198) HJV (ENSPTRG00000044540) ENSPTRG00000046704 PDE4DIP (ENSPTRG00000001188) ENSPTRG00000047110 ENSPTRG00000051383 ENSPTRG00000044177 NOTCH2 (ENSPTRG00000048364) #22 ADAM30 (ENSPTRG00000030467) ENSPTRG00000034182 ENSPTRG00000000232 REG4 (ENSPTRG00000001180) HMGCS2 (ENSPTRG00000001179) PHGDH (ENSPTRG00000001178) ZNF697 (ENSPTRG00000001177) ENSPTRG00000052660 ENSPTRG00000042979 HSD3B1 (ENSPTRG00000024031) ENSPTRG00000047558 ENSPTRG00000048520 HSD3B2 (ENSPTRG00000023445) HAO2 (ENSPTRG00000001174) WARS2 (ENSPTRG00000001173) Orangutan MODERN SPECIES ENSPPYG00000000930 PEX11B (ENSPPYG00000000931) ITGA10 (ENSPPYG00000000932) ANKRD35 (ENSPPYG00000000933) PIAS3 (ENSPPYG00000000934) NUDT17 (ENSPPYG00000000935) POLR3C (ENSPPYG00000000936) RNF115 (ENSPPYG00000000937) ENSPPYG00000000938 PDZK1 (ENSPPYG00000000939) ENSPPYG00000000940 ENSPPYG00000034509 PDE4DIPP2 (ENSPPYG00000000955) ENSPPYG00000039379 SEC22B (ENSPPYG00000000957) NOTCH2 (ENSPPYG00000030910) #22 ADAM30 (ENSPPYG00000040766) ENSPPYG00000000959 REG4 (ENSPPYG00000000960) HMGCS2 (ENSPPYG00000000961) PHGDH (ENSPPYG00000000962) ZNF697 (ENSPPYG00000000963) HSD3B1 (ENSPPYG00000000965) ENSPPYG00000034285 HSD3B2 (ENSPPYG00000000964) HAO2 (ENSPPYG00000000966) WARS2 (ENSPPYG00000037222) TBX15 (ENSPPYG00000000968) SPAG17 (ENSPPYG00000000969) WDR3 (ENSPPYG00000000970) GDAP2 (ENSPPYG00000000971) Gibbon MODERN SPECIES 2 ENSNLEG00000029457 PEX11B (ENSNLEG00000034032) ITGA10 (ENSNLEG00000027150) ANKRD35 (ENSNLEG00000005675) PIAS3 (ENSNLEG00000005672) ENSNLEG00000005664 POLR3C (ENSNLEG00000005645) RNF115 (ENSNLEG00000005628) CD160 (ENSNLEG00000005622) PDZK1 (ENSNLEG00000005613) ENSNLEG00000005551 ENSNLEG00000030673 ENSNLEG00000033214 PDE4DIP (ENSNLEG00000005504) SEC22B (ENSNLEG00000005498) NOTCH2 (ENSNLEG00000005474) #22 ENSNLEG00000036247 ENSNLEG00000035008 REG4 (ENSNLEG00000005464) HMGCS2 (ENSNLEG00000005455) PHGDH (ENSNLEG00000005408) ZNF697 (ENSNLEG00000005403) ENSNLEG00000034143 ENSNLEG00000035738 ENSNLEG00000027783 HSD3B1 (ENSNLEG00000005390) ENSNLEG00000027319 HSD3B2 (ENSNLEG00000035250) HAO2 (ENSNLEG00000005367) WARS2 (ENSNLEG00000005349) TBX15 (ENSNLEG00000005347) Cercopithecidae ANCESTRAL SPECIES 2 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00390000017971 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 Rhinopithecus ANCESTRAL SPECIES 624 ENSGT00950000183190.a.a.b ENSGT00940000156349.i ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 Golden snub-nosed monkey MODERN SPECIES 901 PDE4DIP (ENSRROG00000043075) ENSRROG00000043424 NOTCH2 (ENSRROG00000037806) #22 ENSRROG00000044943 REG4 (ENSRROG00000028653) Black snub-nosed monkey MODERN SPECIES 2546 ENSRBIG00000037466 ENSRBIG00000040934 ENSRBIG00000033964 NOTCH2 (ENSRBIG00000041528) #22 ADAM30 (ENSRBIG00000034509) ENSRBIG00000037781 REG4 (ENSRBIG00000035441) Cercopithecinae ANCESTRAL SPECIES ENSGT00730000111185 ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000018706.m.a ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT00420000029746.e.a.b.a.a.a.a.a.b.a.a ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 Vervet Monkey MODERN SPECIES 12 ITGA10 (ENSCSAG00000001775) ANKRD35 (ENSCSAG00000001771) PIAS3 (ENSCSAG00000001768) NUDT17 (ENSCSAG00000001766) POLR3C (ENSCSAG00000001762) RNF115 (ENSCSAG00000001760) ENSCSAG00000000176 CD160 (ENSCSAG00000001758) PDZK1 (ENSCSAG00000001757) ENSCSAG00000001755 ENSCSAG00000001753 ENSCSAG00000001749 PDE4DIP (ENSCSAG00000001746) ENSCSAG00000000175 SEC22B (ENSCSAG00000001743) NOTCH2 (ENSCSAG00000001741) #22 ADAM30 (ENSCSAG00000001737) ENSCSAG00000001734 ENSCSAG00000001730 REG4 (ENSCSAG00000001723) HMGCS2 (ENSCSAG00000001721) PHGDH (ENSCSAG00000001719) ZNF697 (ENSCSAG00000001718) ENSCSAG00000000174 HSD3B1 (ENSCSAG00000001717) HSD3B2 (ENSCSAG00000001716) HAO2 (ENSCSAG00000001715) WARS2 (ENSCSAG00000001713) TBX15 (ENSCSAG00000001712) SPAG17 (ENSCSAG00000001708) WDR3 (ENSCSAG00000001705) Cercopithecinae_a ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT00860000136151.f ENSGT00420000029746.e.a.b.a.a.a.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.a.a.b ENSGT01020000230346.A.cb.a.c ENSGT00390000010165.i.b.b.b ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a Macaca ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT00860000136151.e.a ENSGT00420000029746.e.a.b.a.a.a.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.a.a.b ENSGT01020000230346.A.cb.a.c ENSGT00390000010165.i.b.b.b ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A Pig-tailed macaque MODERN SPECIES 556 PEX11B (ENSMNEG00000029865) ITGA10 (ENSMNEG00000035387) ANKRD35 (ENSMNEG00000031803) PIAS3 (ENSMNEG00000036118) NUDT17 (ENSMNEG00000041081) POLR3C (ENSMNEG00000040944) RNF115 (ENSMNEG00000031592) ENSMNEG00000033399 CD160 (ENSMNEG00000043287) PDZK1 (ENSMNEG00000021393) ENSMNEG00000030135 ENSMNEG00000030638 ENSMNEG00000037985 PDE4DIP (ENSMNEG00000022523) SEC22B (ENSMNEG00000042539) NOTCH2 (ENSMNEG00000028518) #22 ENSMNEG00000044277 REG4 (ENSMNEG00000028106) HMGCS2 (ENSMNEG00000037230) PHGDH (ENSMNEG00000039018) ZNF697 (ENSMNEG00000032913) ENSMNEG00000028701 ENSMNEG00000044623 ENSMNEG00000034901 HSD3B1 (ENSMNEG00000038988) ENSMNEG00000036898 ENSMNEG00000042859 HSD3B2 (ENSMNEG00000004563) HAO2 (ENSMNEG00000033251) WARS2 (ENSMNEG00000029069) TBX15 (ENSMNEG00000037058) Macaca_a ANCESTRAL SPECIES ENSGT01050000244841.A.a.b ENSGT00390000014273.b ENSGT00940000158423 ENSGT00530000063074.a ENSGT01030000234539.a.a.b.a.a ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT00940000164709.a.b.b.b.a.b.c.b.b ENSGT00420000029746.e.a.b.a.a.a.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00940000161374.a.a.b ENSGT00820000127150 ENSGT00390000010165.i.b.b.b ENSGT00940000161374.b.b ENSGT00940000161374.a.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 Rhesus MODERN SPECIES GNRHR2 (ENSMMUG00000016049) PEX11B (ENSMMUG00000016048) ITGA10 (ENSMMUG00000016043) NUDT17 (ENSMMUG00000016734) POLR3C (ENSMMUG00000016735) RNF115 (ENSMMUG00000016736) CD160 (ENSMMUG00000007969) PDZK1 (ENSMMUG00000019642) GPR89A (ENSMMUG00000019640) ENSMMUG00000053312 ENSMMUG00000056325 ENSMMUG00000055722 ENSMMUG00000044046 ENSMMUG00000054069 SEC22B (ENSMMUG00000062859) NOTCH2 (ENSMMUG00000018375) #22 ADAM30 (ENSMMUG00000017482) ENSMMUG00000052610 ENSMMUG00000014849 REG4 (ENSMMUG00000060387) ENSMMUG00000062170 HMGCS2 (ENSMMUG00000023097) PHGDH (ENSMMUG00000023089) ENSMMUG00000029348 ZNF697 (ENSMMUG00000060016) ENSMMUG00000056972 HSD3B1 (ENSMMUG00000047765) HSD3B2 (ENSMMUG00000016568) HAO2 (ENSMMUG00000016567) WARS2 (ENSMMUG00000041046) ENSMMUG00000059598 Crab-eating macaque DUPLICATION Crab-eating macaque MODERN SPECIES PIAS3 (ENSMFAG00000001990) NUDT17 (ENSMFAG00000042456) POLR3C (ENSMFAG00000040338) RNF115 (ENSMFAG00000042451) PDZK1 (ENSMFAG00000018292) ENSMFAG00000041095 CD160 (ENSMFAG00000043835) ENSMFAG00000001098 ENSMFAG00000059274 ENSMFAG00000057159 ENSMFAG00000063634 ENSMFAG00000035716 ENSMFAG00000003812 ENSMFAG00000047720 SEC22B (ENSMFAG00000043165) NOTCH2 (ENSMFAG00000001144) #22 ADAM30 (ENSMFAG00000036625) REG4 (ENSMFAG00000005388) HMGCS2 (ENSMFAG00000043696) PHGDH (ENSMFAG00000032226) ENSMFAG00000061533 ENSMFAG00000056103 ENSMFAG00000049256 HSD3B1 (ENSMFAG00000045839) ENSMFAG00000039795 ENSMFAG00000037292 HSD3B2 (ENSMFAG00000000449) HAO2 (ENSMFAG00000002851) WARS2 (ENSMFAG00000001270) TBX15 (ENSMFAG00000044269) SPAG17 (ENSMFAG00000043409) Crab-eating macaque MODERN SPECIES 14 HLA-DMA (ENSMFAG00000042109) HLA-DMB (ENSMFAG00000004018) #7 PSMB9 (ENSMFAG00000038128) #8 TAP1 (ENSMFAG00000041369) #9 TAP2 (ENSMFAG00000037139) #11 HLA-DOB (ENSMFAG00000003652) #13 HLA-DQA1 (ENSMFAG00000002949) ENSMFAG00000054107 HLA-DRB5 (ENSMFAG00000000676) #17 ENSMFAG00000058962 #17 HLA-DRA (ENSMFAG00000032157) ENSMFAG00000033140 #20 ENSMFAG00000049929 ENSMFAG00000033054 RNF5 (ENSMFAG00000033282) #26 ENSMFAG00000059430 #22 GPSM3 (ENSMFAG00000044173) #23 PBX2 (ENSMFAG00000045367) #24 AGER (ENSMFAG00000038314) #25 AGPAT1 (ENSMFAG00000042426) #27 EGFL8 (ENSMFAG00000062553) #28 PPT2 (ENSMFAG00000018625) #29 PRRT1 (ENSMFAG00000032011) #30 FKBPL (ENSMFAG00000006509) #31 ATF6B (ENSMFAG00000041028) #32 ENSMFAG00000002351 ENSMFAG00000053747 CYP21A2 (ENSMFAG00000002347) #35 ENSMFAG00000059643 ENSMFAG00000063910 #35 ENSMFAG00000003345 #33 Cercopithecinae_b ANCESTRAL SPECIES 1 ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00420000029746.e.a.b.a.a.a.a.b.a ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.a.a.b ENSGT01020000230346.A.cb.a.c ENSGT00390000010165.i.b.b.b ENSGT00940000161374.b.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A Olive baboon MODERN SPECIES ENSPANG00000002791 ENSPANG00000036881 ENSPANG00000037189 ENSPANG00000012430 ENSPANG00000037273 ENSPANG00000049208 GJA8 (ENSPANG00000014667) ENSPANG00000040876 GJA5 (ENSPANG00000014222) ACP6 (ENSPANG00000004993) BCL9 (ENSPANG00000021034) CHD1L (ENSPANG00000009170) ENSPANG00000005600 ENSPANG00000050046 SEC22B (ENSPANG00000033849) NOTCH2 (ENSPANG00000024009) #22 ADAM30 (ENSPANG00000021035) ENSPANG00000031162 REG4 (ENSPANG00000009171) ENSPANG00000044597 HMGCS2 (ENSPANG00000011380) PHGDH (ENSPANG00000012431) ZNF697 (ENSPANG00000018117) ENSPANG00000037635 ENSPANG00000017026 ENSPANG00000037056 HSD3B1 (ENSPANG00000012519) ENSPANG00000048358 HSD3B2 (ENSPANG00000009969) HAO2 (ENSPANG00000004481) ENSPANG00000045254 Cercopithecinae_d ANCESTRAL SPECIES 49 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00420000029746.e.a.b.a.a.a.a.b.b.b.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374.a.a.a ENSGT00940000161374.a.a.b ENSGT01020000230346.A.cb.a.c ENSGT00940000161374.b.b ENSGT00940000161374.b.a.b ENSGT00940000161374.b.a.a ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 Sooty mangabey MODERN SPECIES 304 ENSCATG00000036091 ENSCATG00000039858 PDE4DIP (ENSCATG00000031339) SEC22B (ENSCATG00000039138) NOTCH2 (ENSCATG00000041772) #22 ENSCATG00000032864 REG4 (ENSCATG00000001299) HMGCS2 (ENSCATG00000032352) PHGDH (ENSCATG00000038103) ZNF697 (ENSCATG00000002584) ENSCATG00000035127 ENSCATG00000042151 ENSCATG00000031604 HSD3B1 (ENSCATG00000028188) ENSCATG00000033726 HSD3B2 (ENSCATG00000031867) HAO2 (ENSCATG00000035352) WARS2 (ENSCATG00000041648) TBX15 (ENSCATG00000031668) SPAG17 (ENSCATG00000033246) Drill DUPLICATION Drill MODERN SPECIES 333 NOTCH2 (ENSMLEG00000030260) #22 NOTCH2NLR (ENSMLEG00000030050) SEC22B (ENSMLEG00000031638) PDE4DIP (ENSMLEG00000035720) Drill MODERN SPECIES 1628 ENSMLEG00000037625 #20 ENSMLEG00000033654 #22 NOTCH4 (ENSMLEG00000028646) GPSM3 (ENSMLEG00000043901) #23 PBX2 (ENSMLEG00000035885) #24 AGER (ENSMLEG00000000793) #25 RNF5 (ENSMLEG00000037504) #26 AGPAT1 (ENSMLEG00000040906) #27 PPT2 (ENSMLEG00000038664) #29 PRRT1 (ENSMLEG00000018414) #30 FKBPL (ENSMLEG00000001506) #31 ATF6B (ENSMLEG00000033677) #32 ENSMLEG00000036725 ENSMLEG00000036279 #35 ENSMLEG00000038415 Platyrrhini ANCESTRAL SPECIES 100 ENSGT00940000155030 #22 ENSGT00940000162954 Cebidae ANCESTRAL SPECIES 60 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 Marmoset MODERN SPECIES 19 ENSCJAG00000039799 ENSCJAG00000086984 PDE4DIP (ENSCJAG00000019954) SEC22B (ENSCJAG00000043279) ENSCJAG00000061592 ENSCJAG00000054184 NOTCH2 (ENSCJAG00000019931) #22 ENSCJAG00000052544 ENSCJAG00000066741 ENSCJAG00000019916 HMGCS2 (ENSCJAG00000019899) ENSCJAG00000046196 REG4 (ENSCJAG00000019892) ENSCJAG00000085290 ZNF697 (ENSCJAG00000022909) ENSCJAG00000085345 ENSCJAG00000023348 ENSCJAG00000074294 ENSCJAG00000073117 HAO2 (ENSCJAG00000005623) ENSCJAG00000082873 WARS2 (ENSCJAG00000005653) Cebidae_a ANCESTRAL SPECIES 160 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 Bolivian squirrel monkey MODERN SPECIES 272 PDE4DIP (ENSSBOG00000029404) SEC22B (ENSSBOG00000025016) NOTCH2 (ENSSBOG00000002112) #22 ADAM30 (ENSSBOG00000029747) Capuchin MODERN SPECIES 1095 ENSCCAG00000023971 #22 Mas night monkey DUPLICATION Mas night monkey MODERN SPECIES 775 ENSANAG00000028435 PDE4DIP (ENSANAG00000031498) ENSANAG00000024321 SEC22B (ENSANAG00000022757) NOTCH2 (ENSANAG00000020885) #22 ENSANAG00000029304 ENSANAG00000029050 REG4 (ENSANAG00000034580) HMGCS2 (ENSANAG00000028816) PHGDH (ENSANAG00000020037) ZNF697 (ENSANAG00000035327) ENSANAG00000027651 ENSANAG00000024099 HAO2 (ENSANAG00000027767) WARS2 (ENSANAG00000023161) TBX15 (ENSANAG00000031356) SPAG17 (ENSANAG00000023109) WDR3 (ENSANAG00000033348) GDAP2 (ENSANAG00000019806) TENT5C (ENSANAG00000020216) Mas night monkey MODERN SPECIES 202 ENSANAG00000000009 #22 Laurasiatheria ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Laurasiatheria_a ANCESTRAL SPECIES ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Artiodactyla ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Suina ANCESTRAL SPECIES 32 ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Pig MODERN SPECIES 12 RNF115 (ENSSSCG00000037355) PDZK1 (ENSSSCG00000006693) ENSSSCG00000006694 GJA8 (ENSSSCG00000036239) GJA5 (ENSSSCG00000006696) ACP6 (ENSSSCG00000006697) BCL9 (ENSSSCG00000006698) ENSSSCG00000033862 CHD1L (ENSSSCG00000006701) FMO5 (ENSSSCG00000006702) PRKAB2 (ENSSSCG00000006703) ENSSSCG00000060248 PDE4DIP (ENSSSCG00000024481) ENSSSCG00000049559 SEC22B (ENSSSCG00000020964) NOTCH2 (ENSSSCG00000006709) #22 ENSSSCG00000054500 ENSSSCG00000056978 ENSSSCG00000058164 ADAM30 (ENSSSCG00000006713) REG4 (ENSSSCG00000040947) ENSSSCG00000058639 HMGCS2 (ENSSSCG00000036808) PHGDH (ENSSSCG00000006717) ZNF697 (ENSSSCG00000063017) ENSSSCG00000006719 HAO2 (ENSSSCG00000006720) WARS2 (ENSSSCG00000027153) ENSSSCG00000006725 SPAG17 (ENSSSCG00000006726) WDR3 (ENSSSCG00000006727) Chacoan peccary MODERN SPECIES 29 POLR3C (ENSCWAG00000012364) RNF115 (ENSCWAG00000012426) PDZK1 (ENSCWAG00000012473) ENSCWAG00000012533 GJA8 (ENSCWAG00000012679) GJA5 (ENSCWAG00000012696) ACP6 (ENSCWAG00000012718) BCL9 (ENSCWAG00000012850) ENSCWAG00000012894 CHD1L (ENSCWAG00000012998) FMO5 (ENSCWAG00000014798) PRKAB2 (ENSCWAG00000014832) ENSCWAG00000000055 PDE4DIP (ENSCWAG00000000459) SEC22B (ENSCWAG00000002077) NOTCH2 (ENSCWAG00000002118) #22 ADAM30 (ENSCWAG00000002169) REG4 (ENSCWAG00000002183) HMGCS2 (ENSCWAG00000002224) PHGDH (ENSCWAG00000002289) ZNF697 (ENSCWAG00000002319) ENSCWAG00000002334 HAO2 (ENSCWAG00000002354) WARS2 (ENSCWAG00000002377) TBX15 (ENSCWAG00000002391) SPAG17 (ENSCWAG00000002431) WDR3 (ENSCWAG00000002500) GDAP2 (ENSCWAG00000002542) TENT5C (ENSCWAG00000002576) MAN1A2 (ENSCWAG00000002585) VTCN1 (ENSCWAG00000002628) Artiodactyla_a ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Camelidae ANCESTRAL SPECIES 29 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.e ENSGT00940000162954.f ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Arabian camel MODERN SPECIES 35 ENSCDRG00005001533 KCNG4 (ENSCDRG00005001544) WFDC1 (ENSCDRG00005001559) ATP2C2 (ENSCDRG00005001592) MEAK7 (ENSCDRG00005001698) ENSCDRG00005001718 COTL1 (ENSCDRG00005001729) KLHL36 (ENSCDRG00005001746) USP10 (ENSCDRG00005001768) CRISPLD2 (ENSCDRG00005001807) ZDHHC7 (ENSCDRG00005001833) PRKAB2 (ENSCDRG00005001847) ENSCDRG00005001864 PDE4DIP (ENSCDRG00005001996) SEC22B (ENSCDRG00005002623) NOTCH2 (ENSCDRG00005002643) #22 ENSCDRG00005002687 ENSCDRG00005002701 REG4 (ENSCDRG00005002721) HMGCS2 (ENSCDRG00005002749) PHGDH (ENSCDRG00005002792) ZNF697 (ENSCDRG00005002866) ENSCDRG00005002880 ENSCDRG00005002892 HAO2 (ENSCDRG00005002914) ENSCDRG00005002937 WARS2 (ENSCDRG00005002953) TBX15 (ENSCDRG00005002975) ENSCDRG00005003000 SPAG17 (ENSCDRG00005003031) WDR3 (ENSCDRG00005003128) Artiodactyla_b ANCESTRAL SPECIES ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Cetacea ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493.f ENSGT00940000159284 ENSGT00940000160493.e ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Odontoceti ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493.f ENSGT00940000159284 ENSGT00940000160493.e ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Odontoceti_a ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493.f ENSGT00940000159284 ENSGT00940000160493.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Odontoceti_b ANCESTRAL SPECIES ENSGT00940000157203 ENSGT01010000228887 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493.f ENSGT00940000159284 ENSGT00940000160493.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Monodontidae ANCESTRAL SPECIES ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493.f ENSGT00940000159284 ENSGT00940000160493.e.b ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k ENSGT00940000162718 Narwhal MODERN SPECIES 304 RNF115 (ENSMMNG00015001502) PDZK1 (ENSMMNG00015001570) ENSMMNG00015001615 GJA8 (ENSMMNG00015001638) GJA5 (ENSMMNG00015001644) ACP6 (ENSMMNG00015001670) BCL9 (ENSMMNG00015001709) ENSMMNG00015001727 CHD1L (ENSMMNG00015001842) ENSMMNG00015002123 PRKAB2 (ENSMMNG00015002168) ENSMMNG00015002199 ENSMMNG00015002274 ENSMMNG00015002456 SEC22B (ENSMMNG00015002608) NOTCH2 (ENSMMNG00015002664) #22 ENSMMNG00015002762 PHGDH (ENSMMNG00015002791) ZNF697 (ENSMMNG00015002822) ENSMMNG00015002833 HAO2 (ENSMMNG00015002847) WARS2 (ENSMMNG00015002880) TBX15 (ENSMMNG00015002896) SPAG17 (ENSMMNG00015002964) WDR3 (ENSMMNG00015003055) GDAP2 (ENSMMNG00015003116) TENT5C (ENSMMNG00015003165) MAN1A2 (ENSMMNG00015003175) VTCN1 (ENSMMNG00015003230) TRIM45 (ENSMMNG00015003284) TTF2 (ENSMMNG00015003336) Beluga whale MODERN SPECIES 74 RNF115 (ENSDLEG00000012048) PDZK1 (ENSDLEG00000012026) ENSDLEG00000012011 GJA8 (ENSDLEG00000012004) GJA5 (ENSDLEG00000012001) ACP6 (ENSDLEG00000011988) BCL9 (ENSDLEG00000011971) CHD1L (ENSDLEG00000010686) PRKAB2 (ENSDLEG00000010556) ENSDLEG00000010535 ENSDLEG00000010528 ENSDLEG00000010519 ENSDLEG00000010511 PDE4DIP (ENSDLEG00000009003) SEC22B (ENSDLEG00000008747) NOTCH2 (ENSDLEG00000008673) #22 HMGCS2 (ENSDLEG00000008595) PHGDH (ENSDLEG00000008553) ZNF697 (ENSDLEG00000008534) ENSDLEG00000008503 HAO2 (ENSDLEG00000008484) WARS2 (ENSDLEG00000008432) TBX15 (ENSDLEG00000008335) SPAG17 (ENSDLEG00000008058) WDR3 (ENSDLEG00000007988) GDAP2 (ENSDLEG00000007964) FAM46C (ENSDLEG00000007955) MAN1A2 (ENSDLEG00000007933) TRIM45 (ENSDLEG00000016923) TTF2 (ENSDLEG00000016896) ENSDLEG00000016876 Vaquita MODERN SPECIES PDZK1 (ENSPSNG00000000251) ENSPSNG00000000162 GJA8 (ENSPSNG00000000089) GJA5 (ENSPSNG00000000070) ENSPSNG00000000045 ACP6 (ENSPSNG00000005293) BCL9 (ENSPSNG00000005241) ENSPSNG00000005153 CHD1L (ENSPSNG00000004698) PRKAB2 (ENSPSNG00000004433) ENSPSNG00000004389 ENSPSNG00000004320 ENSPSNG00000004299 ENSPSNG00000004164 SEC22B (ENSPSNG00000004063) NOTCH2 (ENSPSNG00000004012) #22 ENSPSNG00000003977 ENSPSNG00000003958 PHGDH (ENSPSNG00000003909) ZNF697 (ENSPSNG00000003876) ENSPSNG00000003865 HAO2 (ENSPSNG00000003847) WARS2 (ENSPSNG00000003819) TBX15 (ENSPSNG00000003785) SPAG17 (ENSPSNG00000003683) WDR3 (ENSPSNG00000003625) GDAP2 (ENSPSNG00000003591) TENT5C (ENSPSNG00000003573) MAN1A2 (ENSPSNG00000003561) VTCN1 (ENSPSNG00000003497) TRIM45 (ENSPSNG00000003461) Dolphin MODERN SPECIES 386 NOTCH2 (ENSTTRG00000000310) #22 REG4 (ENSTTRG00000000308) Sperm whale MODERN SPECIES 15 ENSPCTG00005012998 PDZK1 (ENSPCTG00005013079) GPR89A (ENSPCTG00005013307) GJA8 (ENSPCTG00005013358) GJA5 (ENSPCTG00005013373) ACP6 (ENSPCTG00005013400) BCL9 (ENSPCTG00005013534) CHD1L (ENSPCTG00005013705) ENSPCTG00005014550 PRKAB2 (ENSPCTG00005014856) ENSPCTG00005014945 ENSPCTG00005015102 PDE4DIP (ENSPCTG00005015314) ENSPCTG00005016056 SEC22B (ENSPCTG00005016111) NOTCH2 (ENSPCTG00005016186) #22 PHGDH (ENSPCTG00005016270) ZNF697 (ENSPCTG00005016347) ENSPCTG00005016397 HAO2 (ENSPCTG00005016473) WARS2 (ENSPCTG00005016663) TBX15 (ENSPCTG00005016688) SPAG17 (ENSPCTG00005016769) WDR3 (ENSPCTG00005017311) GDAP2 (ENSPCTG00005017454) TENT5C (ENSPCTG00005017545) MAN1A2 (ENSPCTG00005017570) VTCN1 (ENSPCTG00005017689) TRIM45 (ENSPCTG00005017746) TTF2 (ENSPCTG00005017917) ENSPCTG00005017986 Blue whale MODERN SPECIES POLR3C (ENSBMSG00010003595) ENSBMSG00010003585 ENSBMSG00010003575 PDZK1 (ENSBMSG00010003562) ENSBMSG00010003553 GJA8 (ENSBMSG00010003547) GJA5 (ENSBMSG00010003545) ACP6 (ENSBMSG00010003521) BCL9 (ENSBMSG00010003513) CHD1L (ENSBMSG00010003302) ENSBMSG00010003208 PRKAB2 (ENSBMSG00010003183) ENSBMSG00010003163 PDE4DIP (ENSBMSG00010001649) SEC22B (ENSBMSG00010001456) NOTCH2 (ENSBMSG00010001428) #22 ENSBMSG00010001411 HMGCS2 (ENSBMSG00010001385) PHGDH (ENSBMSG00010001328) ZNF697 (ENSBMSG00010001299) ENSBMSG00010001282 HAO2 (ENSBMSG00010001258) WARS2 (ENSBMSG00010001240) TBX15 (ENSBMSG00010001214) ENSBMSG00010001201 ENSBMSG00010001169 WDR3 (ENSBMSG00010001140) GDAP2 (ENSBMSG00010001124) ENSBMSG00010001110 TENT5C (ENSBMSG00010001103) MAN1A2 (ENSBMSG00010001075) Pecora ANCESTRAL SPECIES 2 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Yarkand deer MODERN SPECIES 12 PIAS3 (ENSCHYG00000005027) NUDT17 (ENSCHYG00000005077) POLR3C (ENSCHYG00000005139) RNF115 (ENSCHYG00000005206) PDZK1 (ENSCHYG00000005304) ENSCHYG00000005393 GJA8 (ENSCHYG00000005455) GJA5 (ENSCHYG00000005464) ACP6 (ENSCHYG00000005483) BCL9 (ENSCHYG00000005533) ENSCHYG00000005572 CHD1L (ENSCHYG00000005754) ENSCHYG00000006443 PDE4DIP (ENSCHYG00000006902) SEC22B (ENSCHYG00000010779) NOTCH2 (ENSCHYG00000010973) #22 ENSCHYG00000011173 REG4 (ENSCHYG00000011235) HMGCS2 (ENSCHYG00000011318) PHGDH (ENSCHYG00000011474) ZNF697 (ENSCHYG00000011608) ENSCHYG00000011649 HAO2 (ENSCHYG00000011716) ENSCHYG00000011778 WARS2 (ENSCHYG00000011828) TBX15 (ENSCHYG00000011911) SPAG17 (ENSCHYG00000012111) WDR3 (ENSCHYG00000012236) GDAP2 (ENSCHYG00000012378) TENT5C (ENSCHYG00000012566) MAN1A2 (ENSCHYG00000012603) Percora_a ANCESTRAL SPECIES 1 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a Siberian musk deer MODERN SPECIES 98 ENSMMSG00000000186 ENSMMSG00000000114 SEC22B (ENSMMSG00000000100) NOTCH2 (ENSMMSG00000000075) #22 ENSMMSG00000000059 ENSMMSG00000000045 REG4 (ENSMMSG00000000022) HMGCS2 (ENSMMSG00000013835) PHGDH (ENSMMSG00000013755) ZNF697 (ENSMMSG00000013724) ENSMMSG00000013712 HAO2 (ENSMMSG00000013690) WARS2 (ENSMMSG00000013648) TBX15 (ENSMMSG00000013611) ENSMMSG00000013590 ENSMMSG00000013577 SPAG17 (ENSMMSG00000013419) WDR3 (ENSMMSG00000013356) GDAP2 (ENSMMSG00000013305) Bovidae ANCESTRAL SPECIES 1 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a Caprinae ANCESTRAL SPECIES 2 ENSGT00390000002799 ENSGT00940000157203 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Rambouillet Sheep MODERN SPECIES ENSOARG00020002939 CHD1L (ENSOARG00020002654) FMO5 (ENSOARG00020002609) PRKAB2 (ENSOARG00020002599) ENSOARG00020002576 ENSOARG00020002566 ENSOARG00020002526 ENSOARG00020002507 ENSOARG00020002501 ENSOARG00020002495 ENSOARG00020002490 ENSOARG00020002482 ENSOARG00020002454 PDE4DIP (ENSOARG00020001810) SEC22B (ENSOARG00020001722) NOTCH2 (ENSOARG00020001563) #22 ADAM30 (ENSOARG00020001541) REG4 (ENSOARG00020001515) HMGCS2 (ENSOARG00020001485) PHGDH (ENSOARG00020001394) ZNF697 (ENSOARG00020001371) HSD3B1 (ENSOARG00020001361) HAO2 (ENSOARG00020001334) WARS2 (ENSOARG00020001286) TBX15 (ENSOARG00020001253) ENSOARG00020001200 WDR3 (ENSOARG00020001170) GDAP2 (ENSOARG00020001139) TENT5C (ENSOARG00020001120) MAN1A2 (ENSOARG00020001101) VTCN1 (ENSOARG00020001040) Goat MODERN SPECIES 22 RNF115 (ENSCHIG00000025502) PDZK1 (ENSCHIG00000011722) ENSCHIG00000017806 GJA5 (ENSCHIG00000010714) ENSCHIG00000018629 ACP6 (ENSCHIG00000024823) BCL9 (ENSCHIG00000009988) ENSCHIG00000009796 ENSCHIG00000022455 ENSCHIG00000026995 CHD1L (ENSCHIG00000013871) FMO5 (ENSCHIG00000014242) PRKAB2 (ENSCHIG00000015966) PDE4DIP (ENSCHIG00000010241) SEC22B (ENSCHIG00000010105) NOTCH2 (ENSCHIG00000022464) #22 ADAM30 (ENSCHIG00000027182) REG4 (ENSCHIG00000015183) HMGCS2 (ENSCHIG00000025654) PHGDH (ENSCHIG00000018423) ZNF697 (ENSCHIG00000014100) 3BHSD (ENSCHIG00000020217) HAO2 (ENSCHIG00000026466) WARS2 (ENSCHIG00000013499) TBX15 (ENSCHIG00000014427) ENSCHIG00000014484 SPAG17 (ENSCHIG00000014664) WDR3 (ENSCHIG00000010490) GDAP2 (ENSCHIG00000019563) TENT5C (ENSCHIG00000005579) MAN1A2 (ENSCHIG00000013056) Bovinae ANCESTRAL SPECIES 1 ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT01100000263514.B.m.a.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a American bison MODERN SPECIES 2748 PDE4DIP (ENSBBBG00000014087) ENSBBBG00000013688 NOTCH2 (ENSBBBG00000007547) #22 Bos ANCESTRAL SPECIES ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT01100000263514.B.m.a.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000161374 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.a.a.a.a ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 Bos_b ANCESTRAL SPECIES 1 ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT01100000263570.B.t.b ENSGT01100000263514.B.m.a.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.c ENSGT00420000029746.e.b.d ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.a.a.a.a ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693.a ENSGT00940000153859.a ENSGT00940000156336 Cow MODERN SPECIES 22 GJA5 (ENSBTAG00000006720) ACP6 (ENSBTAG00000017051) BCL9 (ENSBTAG00000002422) OR13L2 (ENSBTAG00000046242) OR13L12 (ENSBTAG00000046872) ENSBTAG00000035013 ENSBTAG00000054541 CHD1L (ENSBTAG00000020831) FMO5 (ENSBTAG00000010841) ENSBTAG00000051677 PRKAB2 (ENSBTAG00000014387) ENSBTAG00000052039 PDE4DIP (ENSBTAG00000001564) ENSBTAG00000017316 SEC22B (ENSBTAG00000007712) NOTCH2 (ENSBTAG00000007909) #22 ENSBTAG00000046315 ENSBTAG00000046293 REG4 (ENSBTAG00000032193) HMGCS2 (ENSBTAG00000003898) PHGDH (ENSBTAG00000039719) ZNF697 (ENSBTAG00000032187) HSD3B1 (ENSBTAG00000006769) HAO2 (ENSBTAG00000000123) WARS2 (ENSBTAG00000005064) TBX15 (ENSBTAG00000007767) ENSBTAG00000048491 SPAG17 (ENSBTAG00000001080) WDR3 (ENSBTAG00000019937) GDAP2 (ENSBTAG00000016387) ENSBTAG00000051931 Hybrid Bos Indicus MODERN SPECIES 22 ENSBIXG00005024260 GJA8 (ENSBIXG00005004114) GJA5 (ENSBIXG00005024004) ACP6 (ENSBIXG00005023973) BCL9 (ENSBIXG00005023888) ENSBIXG00005023792 ENSBIXG00005004071 ENSBIXG00005004070 CHD1L (ENSBIXG00005023674) FMO5 (ENSBIXG00005023419) ENSBIXG00005003982 ENSBIXG00005003967 ENSBIXG00005023144 PDE4DIP (ENSBIXG00005022871) SEC22B (ENSBIXG00005022367) NOTCH2 (ENSBIXG00005022312) #22 ENSBIXG00005022285 ENSBIXG00005003789 REG4 (ENSBIXG00005007763) HMGCS2 (ENSBIXG00005022195) PHGDH (ENSBIXG00005022089) ZNF697 (ENSBIXG00005021978) ENSBIXG00005021962 ENSBIXG00005021936 HAO2 (ENSBIXG00005021914) ENSBIXG00005021892 WARS2 (ENSBIXG00005021872) TBX15 (ENSBIXG00005007374) ENSBIXG00005021669 WDR3 (ENSBIXG00005003644) GDAP2 (ENSBIXG00005007307) Bos_a ANCESTRAL SPECIES 32 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.c.a ENSGT00940000162954.d ENSGT00940000162954.c.b ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.a.a.a.a ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Domestic yak MODERN SPECIES 22 ARHGAP29 (ENSBGRG00000000321) ENSBGRG00000000295 ENSBGRG00000000287 ABCD3 (ENSBGRG00000000245) F3 (ENSBGRG00000000221) ENSBGRG00000000201 SLC44A3 (ENSBGRG00000016590) ENSBGRG00000016412 ALG14 (ENSBGRG00000016310) TLCD4 (ENSBGRG00000016247) RWDD3 (ENSBGRG00000016161) PDE4DIP (ENSBGRG00000013976) ENSBGRG00000013889 ENSBGRG00000013856 SEC22B (ENSBGRG00000013753) NOTCH2 (ENSBGRG00000013357) #22 ENSBGRG00000013234 ENSBGRG00000013175 REG4 (ENSBGRG00000013043) HMGCS2 (ENSBGRG00000012904) PHGDH (ENSBGRG00000012503) ZNF697 (ENSBGRG00000012446) ENSBGRG00000012402 HAO2 (ENSBGRG00000012350) ENSBGRG00000012328 WARS2 (ENSBGRG00000012212) TBX15 (ENSBGRG00000012008) SPAG17 (ENSBGRG00000011326) WDR3 (ENSBGRG00000010398) GDAP2 (ENSBGRG00000010327) TENT5C (ENSBGRG00000010319) Wild yak DUPLICATION Wild yak MODERN SPECIES 709 PDE4DIP (ENSBMUG00000012201) SEC22B (ENSBMUG00000012316) NOTCH2 (ENSBMUG00000012357) #22 ENSBMUG00000012392 ENSBMUG00000012400 ENSBMUG00000012408 REG4 (ENSBMUG00000012427) HMGCS2 (ENSBMUG00000012453) PHGDH (ENSBMUG00000012563) ZNF697 (ENSBMUG00000012663) ENSBMUG00000012673 HAO2 (ENSBMUG00000012689) WARS2 (ENSBMUG00000012704) TBX15 (ENSBMUG00000012717) SPAG17 (ENSBMUG00000012756) WDR3 (ENSBMUG00000012791) GDAP2 (ENSBMUG00000012812) ENSBMUG00000012825 Wild yak MODERN SPECIES 1307 ENSBMUG00000023681 #21 ENSBMUG00000023651 ENSBMUG00000023621 #22 GPSM3 (ENSBMUG00000023610) #23 PBX2 (ENSBMUG00000023588) #24 AGER (ENSBMUG00000023555) #25 RNF5 (ENSBMUG00000023524) #26 AGPAT1 (ENSBMUG00000023512) #27 EGFL8 (ENSBMUG00000023501) #28 PPT2 (ENSBMUG00000023484) #29 PRRT1 (ENSBMUG00000023456) #30 FKBPL (ENSBMUG00000023445) #31 ATF6B (ENSBMUG00000023424) #32 ENSBMUG00000023408 ENSBMUG00000023359 CYP21A2 (ENSBMUG00000023340) #35 Laurasiatheria_b ANCESTRAL SPECIES ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.h.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Carnivora ANCESTRAL SPECIES 1 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.h.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Caniformia ANCESTRAL SPECIES 2 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00950000185829 ENSGT00940000158856 Caniformia_b ANCESTRAL SPECIES 1 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00950000185829 ENSGT00940000158856 Ursidae ANCESTRAL SPECIES 32 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j.h.b ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00950000185829 ENSGT00940000158856 Ursus ANCESTRAL SPECIES 107 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT01100000263543.a.j.h.b ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Polar bear MODERN SPECIES 288 ENSUMAG00000025645 ENSUMAG00000025646 SEC22B (ENSUMAG00000025648) NOTCH2 (ENSUMAG00000025650) #22 ADAM30 (ENSUMAG00000000101) REG4 (ENSUMAG00000000264) HMGCS2 (ENSUMAG00000000336) PHGDH (ENSUMAG00000000360) ENSUMAG00000000404 HAO2 (ENSUMAG00000000433) WARS2 (ENSUMAG00000000553) TBX15 (ENSUMAG00000000567) ENSUMAG00000000573 ENSUMAG00000000594 American black bear MODERN SPECIES 3348 NOTCH2 (ENSUAMG00000024995) #22 ADAM30 (ENSUAMG00000024960) REG4 (ENSUAMG00000024959) HMGCS2 (ENSUAMG00000024957) PHGDH (ENSUAMG00000024956) ZNF697 (ENSUAMG00000024955) ENSUAMG00000024954 Giant Panda MODERN SPECIES 11 ANKRD35 (ENSAMEG00000027203) NUDT17 (ENSAMEG00000017541) POLR3C (ENSAMEG00000017531) PIAS3 (ENSAMEG00000017546) CD160 (ENSAMEG00000017521) ENSAMEG00000017498 ENSAMEG00000017475 GJA8 (ENSAMEG00000020296) GJA5 (ENSAMEG00000020295) ACP6 (ENSAMEG00000017466) BCL9 (ENSAMEG00000017456) ENSAMEG00000020293 FMO5 (ENSAMEG00000017038) CHD1L (ENSAMEG00000017063) ENSAMEG00000017027 ENSAMEG00000017614 #22 ADAM30 (ENSAMEG00000019275) REG4 (ENSAMEG00000030784) ENSAMEG00000026581 HMGCS2 (ENSAMEG00000017661) PHGDH (ENSAMEG00000017669) ENSAMEG00000025329 ENSAMEG00000017684 HAO2 (ENSAMEG00000017691) WARS2 (ENSAMEG00000008147) TBX15 (ENSAMEG00000008160) SPAG17 (ENSAMEG00000004302) WDR3 (ENSAMEG00000004339) GDAP2 (ENSAMEG00000004394) ENSAMEG00000024849 TENT5C (ENSAMEG00000019061) Mustelinae ANCESTRAL SPECIES 47 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 American mink MODERN SPECIES 489 ENSNVIG00000008481 PDE4DIP (ENSNVIG00000008508) SC22B (ENSNVIG00000008984) NOTCH2 (ENSNVIG00000009002) #22 ENSNVIG00000009081 REG4 (ENSNVIG00000009112) HMGCS2 (ENSNVIG00000009139) ENSNVIG00000009153 PHGDH (ENSNVIG00000009186) ZNF697 (ENSNVIG00000009291) ENSNVIG00000009295 HAO2 (ENSNVIG00000009307) Ferret MODERN SPECIES 323 ENSMPUG00000001378 ENSMPUG00000001381 PDE4DIP (ENSMPUG00000001386) SEC22B (ENSMPUG00000001397) NOTCH2 (ENSMPUG00000001399) #22 ADAM30 (ENSMPUG00000019385) REG4 (ENSMPUG00000001409) HMGCS2 (ENSMPUG00000001448) PHGDH (ENSMPUG00000001454) ZNF697 (ENSMPUG00000001459) ENSMPUG00000001463 HAO2 (ENSMPUG00000001491) WARS2 (ENSMPUG00000001541) TBX15 (ENSMPUG00000001549) SPAG17 (ENSMPUG00000001553) WDR3 (ENSMPUG00000001565) GDAP2 (ENSMPUG00000001575) TENT5C (ENSMPUG00000001581) MAN1A2 (ENSMPUG00000001585) VTCN1 (ENSMPUG00000001593) Canidae ANCESTRAL SPECIES 25 ENSGT00950000183190.a.a.b ENSGT00940000153169.A.b.b.a.a.a.b.l.h ENSGT00950000186084 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.h ENSGT00940000161011.b ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00950000185829 ENSGT00940000158856 ENSGT00940000157498 Canis_lupus ANCESTRAL SPECIES 10 ENSGT00390000007258 ENSGT00950000182849.A.f.b.c ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a.c.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00940000161011.a ENSGT00940000162954.g ENSGT00950000186084 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.h ENSGT00940000161011.b ENSGT00390000006096.a.a ENSGT00940000155863.q ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00950000185829 ENSGT00940000158856 ENSGT00940000157498 Dingo DUPLICATION Dingo MODERN SPECIES 223 GJA5 (ENSCAFG00020020099) ACP6 (ENSCAFG00020020101) BCL9 (ENSCAFG00020020104) ENSCAFG00020020112 CHD1L (ENSCAFG00020020121) FMO5 (ENSCAFG00020020194) PRKAB2 (ENSCAFG00020020199) ENSCAFG00020020209 ENSCAFG00020020213 ENSCAFG00020020218 ENSCAFG00020020260 ENSCAFG00020020276 ENSCAFG00020020292 ENSCAFG00020020304 SEC22B (ENSCAFG00020020305) ENSCAFG00020020320 #22 ENSCAFG00020020406 #22 ENSCAFG00020020416 ENSCAFG00020020458 HMGCS2 (ENSCAFG00020020467) ENSCAFG00020020479 ZNF697 (ENSCAFG00020020535) ENSCAFG00020020537 HAO2 (ENSCAFG00020020545) WARS2 (ENSCAFG00020020570) TBX15 (ENSCAFG00020020577) ENSCAFG00020020597 WDR3 (ENSCAFG00020020610) ENSCAFG00020020626 GDAP2 (ENSCAFG00020020644) ENSCAFG00020020651 Dingo MODERN SPECIES 223 ACP6 (ENSCAFG00020020101) BCL9 (ENSCAFG00020020104) ENSCAFG00020020112 CHD1L (ENSCAFG00020020121) FMO5 (ENSCAFG00020020194) PRKAB2 (ENSCAFG00020020199) ENSCAFG00020020209 ENSCAFG00020020213 ENSCAFG00020020218 ENSCAFG00020020260 ENSCAFG00020020276 ENSCAFG00020020292 ENSCAFG00020020304 SEC22B (ENSCAFG00020020305) ENSCAFG00020020320 #22 ENSCAFG00020020406 #22 ENSCAFG00020020416 ENSCAFG00020020458 HMGCS2 (ENSCAFG00020020467) ENSCAFG00020020479 ZNF697 (ENSCAFG00020020535) ENSCAFG00020020537 HAO2 (ENSCAFG00020020545) WARS2 (ENSCAFG00020020570) TBX15 (ENSCAFG00020020577) ENSCAFG00020020597 WDR3 (ENSCAFG00020020610) ENSCAFG00020020626 GDAP2 (ENSCAFG00020020644) ENSCAFG00020020651 TENT5C (ENSCAFG00020020652) Dog MODERN SPECIES 8 GJA8 (ENSCAFG00845010011) GJA5 (ENSCAFG00845009988) ACP6 (ENSCAFG00845009847) BCL9 (ENSCAFG00845009728) ENSCAFG00845009667 CHD1L (ENSCAFG00845009101) FMO5 (ENSCAFG00845008928) ENSCAFG00845008839 ENSCAFG00845008727 ENSCAFG00845008699 ENSCAFG00845008609 ENSCAFG00845008556 ENSCAFG00845008064 ENSCAFG00845007848 ENSCAFG00845007734 NOTCH2 (ENSCAFG00845007331) #22 ENSCAFG00845007183 ENSCAFG00845007114 HMGCS2 (ENSCAFG00845006979) ENSCAFG00845006590 ENSCAFG00845006411 ZNF697 (ENSCAFG00845006387) HSD3B2 (ENSCAFG00845006351) HAO2 (ENSCAFG00845006278) WARS2 (ENSCAFG00845006189) TBX15 (ENSCAFG00845006079) SPAG17 (ENSCAFG00845005984) WDR3 (ENSCAFG00845005942) GDAP2 (ENSCAFG00845005877) TENT5C (ENSCAFG00845005783) MAN1A2 (ENSCAFG00845029509) Red fox MODERN SPECIES 293 ENSVVUG00000030433 ENSVVUG00000030430 ENSVVUG00000030428 ENSVVUG00000030427 SEC22B (ENSVVUG00000030424) NOTCH2 (ENSVVUG00000030423) #22 ADAM30 (ENSVVUG00000030422) ENSVVUG00000030421 REG4 (ENSVVUG00000030420) ENSVVUG00000030419 Felidae ANCESTRAL SPECIES 10 ENSGT00390000000684 ENSGT01050000244864.D ENSGT01090000260658 ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a.e ENSGT01100000263570.B.t.a.f ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.h.a ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 Cat MODERN SPECIES 239 CD160 (ENSFCAG00000013367) PDZK1 (ENSFCAG00000013368) ENSFCAG00000024477 GJA8 (ENSFCAG00000012909) GJA5 (ENSFCAG00000000351) ACP6 (ENSFCAG00000025430) BCL9 (ENSFCAG00000000349) ENSFCAG00000027476 ENSFCAG00000033242 CHD1L (ENSFCAG00000007777) FMO5 (ENSFCAG00000013037) PRKAB2 (ENSFCAG00000038678) ENSFCAG00000051298 PDE4DIP (ENSFCAG00000028868) SEC22B (ENSFCAG00000022013) NOTCH2 (ENSFCAG00000009649) #22 REG4 (ENSFCAG00000038303) HMGCS2 (ENSFCAG00000011475) PHGDH (ENSFCAG00000011474) ZNF697 (ENSFCAG00000026025) ENSFCAG00000048538 HSD3B2 (ENSFCAG00000025160) HAO2 (ENSFCAG00000002698) WARS2 (ENSFCAG00000007370) TBX15 (ENSFCAG00000043861) ENSFCAG00000011531 WDR3 (ENSFCAG00000003469) GDAP2 (ENSFCAG00000003468) TENT5C (ENSFCAG00000022444) MAN1A2 (ENSFCAG00000019000) VTCN1 (ENSFCAG00000009689) Panthera ANCESTRAL SPECIES 4 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k Tiger MODERN SPECIES 63 ENSPTIG00000012730 ENSPTIG00000019579 ENSPTIG00000018548 ENSPTIG00000018371 SEC22B (ENSPTIG00000017942) NOTCH2 (ENSPTIG00000014724) #22 REG4 (ENSPTIG00000013579) HMGCS2 (ENSPTIG00000011965) PHGDH (ENSPTIG00000004897) ZNF697 (ENSPTIG00000002818) ENSPTIG00000000014 HAO2 (ENSPTIG00000021750) WARS2 (ENSPTIG00000021158) TBX15 (ENSPTIG00000020538) SPAG17 (ENSPTIG00000018997) WDR3 (ENSPTIG00000016747) GDAP2 (ENSPTIG00000015029) TENT5C (ENSPTIG00000007350) MAN1A2 (ENSPTIG00000013526) VTCN1 (ENSPTIG00000012535) TRIM45 (ENSPTIG00000010832) Panthera_a ANCESTRAL SPECIES 11 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 ENSGT00940000157300 ENSGT00940000154334.k lion MODERN SPECIES 8 OAZ3 (ENSPLOG00000008964) TDRKH (ENSPLOG00000009153) LINGO4 (ENSPLOG00000009326) RORC (ENSPLOG00000009361) C2CD4D (ENSPLOG00000009475) THEM5 (ENSPLOG00000009488) THEM4 (ENSPLOG00000009530) S100A10 (ENSPLOG00000009560) ENSPLOG00000009583 TCHHL1 (ENSPLOG00000009612) ENSPLOG00000009645 RPTN (ENSPLOG00000009684) ENSPLOG00000009717 PDE4DIP (ENSPLOG00000009882) SEC22B (ENSPLOG00000010603) NOTCH2 (ENSPLOG00000010680) #22 REG4 (ENSPLOG00000010847) HMGCS2 (ENSPLOG00000010925) PHGDH (ENSPLOG00000011111) ZNF697 (ENSPLOG00000011563) ENSPLOG00000011592 HAO2 (ENSPLOG00000011694) WARS2 (ENSPLOG00000011821) TBX15 (ENSPLOG00000011860) SPAG17 (ENSPLOG00000012093) WDR3 (ENSPLOG00000012483) GDAP2 (ENSPLOG00000012658) ENSPLOG00000012701 TENT5C (ENSPLOG00000012735) MAN1A2 (ENSPLOG00000012755) VTCN1 (ENSPLOG00000012889) leopard DUPLICATION leopard MODERN SPECIES 31 ENSPPRG00000004060 ENSPPRG00000005578 ENSPPRG00000006640 SEC22B (ENSPPRG00000006928) NOTCH2 (ENSPPRG00000009066) #22 REG4 (ENSPPRG00000009446) HMGCS2 (ENSPPRG00000010177) PHGDH (ENSPPRG00000012658) ZNF697 (ENSPPRG00000013640) ENSPPRG00000013982 HAO2 (ENSPPRG00000016364) WARS2 (ENSPPRG00000017754) TBX15 (ENSPPRG00000020309) SPAG17 (ENSPPRG00000023948) WDR3 (ENSPPRG00000022972) GDAP2 (ENSPPRG00000000210) TENT5C (ENSPPRG00000016270) MAN1A2 (ENSPPRG00000000605) VTCN1 (ENSPPRG00000001120) TRIM45 (ENSPPRG00000001987) leopard MODERN SPECIES 243 ENSPPRG00000003649 #22 GPSM3 (ENSPPRG00000003600) #23 PBX2 (ENSPPRG00000003404) #24 AGER (ENSPPRG00000002538) #25 RNF5 (ENSPPRG00000023626) #26 AGPAT1 (ENSPPRG00000023785) #27 EGFL8 (ENSPPRG00000015781) #28 PPT2 (ENSPPRG00000012012) #29 PRRT1 (ENSPPRG00000011167) #30 FKBPL (ENSPPRG00000022079) #31 ATF6B (ENSPPRG00000010646) #32 ENSPPRG00000010387 ENSPPRG00000010194 CYP21A1 (ENSPPRG00000009928) #35 ENSPPRG00000009491 #33 STK19 (ENSPPRG00000006513) #34 Laurasiatheria_c ANCESTRAL SPECIES ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.h.a ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 ENSGT00940000157498 Equus ANCESTRAL SPECIES 3 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.a.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00420000029746.e.b.h.a.a.a ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000161011 ENSGT00420000029746.e.b.h.a.a.b.b.b.b ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00820000127150 ENSGT00940000163677.a.b.a.b ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Donkey MODERN SPECIES 7 ENSEASG00005007133 ENSEASG00005007009 ENSEASG00005006436 #22 ENSEASG00005006415 ENSEASG00005033653 ENSEASG00005028726 HMGCS2 (ENSEASG00005006411) PHGDH (ENSEASG00005006410) ZNF697 (ENSEASG00005006409) ENSEASG00005037316 ENSEASG00005006408 HAO2 (ENSEASG00005006405) WARS2 (ENSEASG00005024683) TBX15 (ENSEASG00005006401) SPAG17 (ENSEASG00005024790) WDR3 (ENSEASG00005006393) GDAP2 (ENSEASG00005006392) TENT5C (ENSEASG00005033293) Horse MODERN SPECIES 26 CD160 (ENSECAG00000010888) PDZK1 (ENSECAG00000011351) ENSECAG00000013689 GJA8 (ENSECAG00000002537) GJA5 (ENSECAG00000022462) ENSECAG00000006074 ACP6 (ENSECAG00000022581) BCL9 (ENSECAG00000004159) ENSECAG00000038633 CHD1L (ENSECAG00000008915) FMO5 (ENSECAG00000019741) PRKAB2 (ENSECAG00000020796) ENSECAG00000036385 PDE4DIP (ENSECAG00000022891) SEC22B (ENSECAG00000014055) NOTCH2 (ENSECAG00000015266) #22 ENSECAG00000042755 ENSECAG00000035708 HMGCS2 (ENSECAG00000000589) PHGDH (ENSECAG00000005228) ZNF697 (ENSECAG00000031539) ENSECAG00000030759 HSD3B2 (ENSECAG00000014483) HAO2 (ENSECAG00000059835) WARS2 (ENSECAG00000021622) TBX15 (ENSECAG00000023325) SPAG17 (ENSECAG00000024156) WDR3 (ENSECAG00000006575) GDAP2 (ENSECAG00000014270) TENT5C (ENSECAG00000019626) MAN1A2 (ENSECAG00000019681) Chiroptera ANCESTRAL SPECIES 20 ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00940000163287 ENSGT00390000002471 #23 ENSGT00940000160293 #24 ENSGT00890000139566 #25 ENSGT00390000014107.a.b.z #26 ENSGT00390000008726.h.b #27 ENSGT00940000162975 #28 ENSGT00940000155779.a.b #29 ENSGT00940000162382 #30 ENSGT00920000149187 #31 ENSGT00940000160798 #32 ENSGT00940000155565 ENSGT00940000158338 #35 ENSGT00940000155739 #33 Megabat MODERN SPECIES 630 NOTCH2 (ENSPVAG00000002316) #22 ADAM30 (ENSPVAG00000002315) Microchiroptera ANCESTRAL SPECIES 21 ENSGT00390000013847 ENSGT00390000002799 ENSGT00940000157203 ENSGT00390000007258 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.t.b ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 ENSGT00390000002471 #23 ENSGT00940000160293 #24 ENSGT00890000139566 #25 ENSGT00390000014107.a.b.z #26 ENSGT00390000008726.h.b #27 ENSGT00940000162975 #28 ENSGT00940000155779.a.b #29 ENSGT00940000162382 #30 ENSGT00920000149187 #31 ENSGT00940000160798 #32 ENSGT00940000155565 ENSGT00940000158338 #35 ENSGT00940000155739 #33 ENSGT00390000018295 #34 Microbat MODERN SPECIES 1140 ATP1A1 (ENSMLUG00000005048) ENSMLUG00000022981 IGSF3 (ENSMLUG00000003182) ENSMLUG00000003193 PTGFRN (ENSMLUG00000007160) CD101 (ENSMLUG00000007176) TTF2 (ENSMLUG00000013908) TRIM45 (ENSMLUG00000013923) VTCN1 (ENSMLUG00000013927) MAN1A2 (ENSMLUG00000014231) TENT5C (ENSMLUG00000014236) GDAP2 (ENSMLUG00000003494) WDR3 (ENSMLUG00000003500) PDE4DIP (ENSMLUG00000012437) SEC22B (ENSMLUG00000025411) NOTCH2 (ENSMLUG00000003023) #22 ADAM30 (ENSMLUG00000005957) REG4 (ENSMLUG00000003014) HMGCS2 (ENSMLUG00000003004) PHGDH (ENSMLUG00000002986) ZNF697 (ENSMLUG00000014249) ENSMLUG00000002982 HAO2 (ENSMLUG00000002972) WARS2 (ENSMLUG00000002965) TBX15 (ENSMLUG00000002958) ENSMLUG00000025065 SPAG17 (ENSMLUG00000000696) ENSMLUG00000028155 ENSMLUG00000028511 Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 14 PDZK1 (ENSRFEG00010017870) ENSRFEG00010017789 GJA8 (ENSRFEG00010017764) ACP6 (ENSRFEG00010017620) BCL9 (ENSRFEG00010017559) ENSRFEG00010017488 CHD1L (ENSRFEG00010015905) ENSRFEG00010015720 ENSRFEG00010015393 ENSRFEG00010015308 PRKAB2 (ENSRFEG00010015269) ENSRFEG00010015240 ENSRFEG00010011108 ENSRFEG00010010887 SEC22B (ENSRFEG00010010861) NOTCH2 (ENSRFEG00010010773) #22 ENSRFEG00010010683 REG4 (ENSRFEG00010019493) HMGCS2 (ENSRFEG00010019427) ENSRFEG00010019349 ZNF697 (ENSRFEG00010019306) ENSRFEG00010019185 WARS2 (ENSRFEG00010019131) TBX15 (ENSRFEG00010019084) SPAG17 (ENSRFEG00010018691) WDR3 (ENSRFEG00010018610) GDAP2 (ENSRFEG00010018562) TENT5C (ENSRFEG00010018543) MAN1A2 (ENSRFEG00010018506) VTCN1 (ENSRFEG00010018302) TRIM45 (ENSRFEG00010018200) Greater horseshoe bat MODERN SPECIES 21 TAP2 (ENSRFEG00010012594) #11 HLA-DOB (ENSRFEG00010012534) #13 ENSRFEG00010012490 ENSRFEG00010012374 ENSRFEG00010010765 #14 ENSRFEG00010010549 #15 HLA-DQB2 (ENSRFEG00010010410) #14 ENSRFEG00010010287 #15 ENSRFEG00010010222 #16 HLA-DRA (ENSRFEG00010010177) ENSRFEG00010010130 BTNL2 (ENSRFEG00010004871) #18 ENSRFEG00010004851 ENSRFEG00010004842 ENSRFEG00010004830 #16 ENSRFEG00010004789 #22 GPSM3 (ENSRFEG00010004767) #23 PBX2 (ENSRFEG00010004757) #24 AGER (ENSRFEG00010004736) #25 RNF5 (ENSRFEG00010004713) #26 AGPAT1 (ENSRFEG00010004702) #27 EGFL8 (ENSRFEG00010004693) #28 PPT2 (ENSRFEG00010004670) #29 PRRT1 (ENSRFEG00010004649) #30 FKBPL (ENSRFEG00010004642) #31 ATF6B (ENSRFEG00010004612) #32 TNXB (ENSRFEG00010004576) CYP21A2 (ENSRFEG00010004504) #35 ENSRFEG00010003936 #33 STK19 (ENSRFEG00010003603) #34 DXO (ENSRFEG00010003576) #36 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000155030 #22 Hedgehog MODERN SPECIES 3083 NOTCH2 (ENSEEUG00000005033) #22 Common shrew DUPLICATION Common shrew MODERN SPECIES 11170 NOTCH2 (ENSSARG00000008097) #22 Common shrew MODERN SPECIES 6716 ENSSARG00000004400 #22 Atlantogenata ANCESTRAL SPECIES 184 ENSGT00420000029746 ENSGT00950000183190.a.a.b ENSGT00390000017971 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 Afrotheria ANCESTRAL SPECIES 31 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000155444 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000162954.i ENSGT00950000183190.a.a.b ENSGT00390000017971 ENSGT00940000156349 ENSGT00940000155030 #22 Afrotheria_a ANCESTRAL SPECIES 31 ENSGT00940000157498 ENSGT00940000158856 ENSGT00940000156336 ENSGT00940000153859.a ENSGT00390000013693 ENSGT00940000159013 ENSGT00940000153724.A ENSGT00390000018717.b.a.b ENSGT00940000155444 ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000162954.i ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 Elephant MODERN SPECIES 26 MAN1A2 (ENSLAFG00000017263) TENT5C (ENSLAFG00000014696) GDAP2 (ENSLAFG00000012098) WDR3 (ENSLAFG00000012108) SPAG17 (ENSLAFG00000012115) TBX15 (ENSLAFG00000018452) WARS2 (ENSLAFG00000018455) HAO2 (ENSLAFG00000010622) ENSLAFG00000027896 ZNF697 (ENSLAFG00000032116) PHGDH (ENSLAFG00000002391) ENSLAFG00000026695 ENSLAFG00000009827 ENSLAFG00000026428 SEC22B (ENSLAFG00000029746) NOTCH2 (ENSLAFG00000011961) #22 Hyrax MODERN SPECIES 2430 NOTCH2 (ENSPCAG00000002647) #22 Tenrec DUPLICATION Tenrec MODERN SPECIES 8984 ENSETEG00000005837 #22 Tenrec MODERN SPECIES 2980 ENSETEG00000016213 #22 Xenarthra ANCESTRAL SPECIES 1105 ENSGT00420000029746 ENSGT00950000183190.a.a.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954 Sloth MODERN SPECIES 2674 NOTCH2 (ENSCHOG00000007917) #22 Armadillo MODERN SPECIES 565 ENSDNOG00000048280 PDE4DIP (ENSDNOG00000017545) SEC22B (ENSDNOG00000033611) NOTCH2 (ENSDNOG00000010476) #22 ADAM30 (ENSDNOG00000010206) CAPN9 (ENSDNOG00000048702) C1orf198 (ENSDNOG00000038164) Marsupialia ANCESTRAL SPECIES 2 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.y.a.b.b ENSGT01100000263570.B.y.a.b.a ENSGT01100000263570.B.y.a.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.k.a ENSGT00940000162954.k.b.b ENSGT00940000163677.a.b.a.b ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000162954.k.b.a ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Opossum DUPLICATION Opossum MODERN SPECIES 1 ENSMODG00000044075 ENSMODG00000043114 ENSMODG00000018731 ENSMODG00000040405 ENSMODG00000051286 ENSMODG00000045333 CHD1L (ENSMODG00000018717) ENSMODG00000038963 FMO5 (ENSMODG00000018713) ENSMODG00000018710 ENSMODG00000047198 ENSMODG00000018708 ENSMODG00000039193 ENSMODG00000042744 SEC22B (ENSMODG00000018705) NOTCH2 (ENSMODG00000018700) #22 ENSMODG00000018694 ENSMODG00000018692 ZNF697 (ENSMODG00000040515) ENSMODG00000028020 REG4 (ENSMODG00000018685) ENSMODG00000005437 PHGDH (ENSMODG00000005422) ENSMODG00000037049 ENSMODG00000040590 HAO2 (ENSMODG00000005385) WARS2 (ENSMODG00000049612) TBX15 (ENSMODG00000005319) SPAG17 (ENSMODG00000005306) WDR3 (ENSMODG00000005243) ENSMODG00000028610 Opossum MODERN SPECIES 1 MODO-UM (ENSMODG00000039032) ENSMODG00000014687 ENSMODG00000014692 ENSMODG00000014713 HLA-DRA (ENSMODG00000014722) ENSMODG00000014728 ENSMODG00000036691 ENSMODG00000025678 ENSMODG00000014767 #19 ENSMODG00000039084 #19 ENSMODG00000050430 #21 ENSMODG00000046754 #19 ENSMODG00000046587 #19 ENSMODG00000014831 ENSMODG00000014839 ENSMODG00000014864 #22 GPSM3 (ENSMODG00000014867) #23 PBX2 (ENSMODG00000014873) #24 AGER (ENSMODG00000014881) #25 RNF5 (ENSMODG00000014886) #26 AGPAT1 (ENSMODG00000014891) #27 EGFL8 (ENSMODG00000014898) #28 PRRT1 (ENSMODG00000014910) #30 PPT2 (ENSMODG00000014907) #29 FKBPL (ENSMODG00000014912) #31 ATF6B (ENSMODG00000014920) #32 ENSMODG00000040946 ENSMODG00000014936 CYP21A2 (ENSMODG00000014950) #35 ENSMODG00000040290 ENSMODG00000014979 #33 Marsupialia_b ANCESTRAL SPECIES 1 ENSGT00950000182849.A.f.b ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.y.a.b.b ENSGT01100000263570.B.y.a.b.a ENSGT01100000263570.B.y.a.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.k.a ENSGT00940000162954.k.b.b ENSGT00940000163677.a.b.a.b ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000162954.k.b.a ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 Tasmanian devil MODERN SPECIES 3 GJA8 (ENSSHAG00000018387) GJA5 (ENSSHAG00000018182) ACP6 (ENSSHAG00000018071) BCL9 (ENSSHAG00000018010) ENSSHAG00000028022 ENSSHAG00000023811 ENSSHAG00000022401 ENSSHAG00000024790 ENSSHAG00000030547 ENSSHAG00000020897 CHD1L (ENSSHAG00000017395) ENSSHAG00000017295 ENSSHAG00000017172 ENSSHAG00000016806 ENSSHAG00000026731 ENSSHAG00000015968 #22 ENSSHAG00000027836 ENSSHAG00000015826 ENSSHAG00000022370 ENSSHAG00000024273 ENSSHAG00000015508 ENSSHAG00000015388 ENSSHAG00000015317 ENSSHAG00000015157 ENSSHAG00000027956 HAO2 (ENSSHAG00000014895) WARS2 (ENSSHAG00000013680) TBX15 (ENSSHAG00000012785) ENSSHAG00000031021 SPAG17 (ENSSHAG00000005600) WDR3 (ENSSHAG00000005169) Diprotodontia ANCESTRAL SPECIES 42 ENSGT00940000160997 ENSGT00940000164042.b ENSGT00940000162498 ENSGT00950000183127.b.c.b ENSGT00940000162079.g.b #19 ENSGT00940000155030 #22 ENSGT00390000002471 #23 ENSGT00940000160293 #24 ENSGT00890000139566 #25 ENSGT00390000014107.a.b #26 ENSGT00390000008726.h.b #27 ENSGT00940000162975 #28 ENSGT00940000155779.a.b #29 ENSGT00940000162382 #30 ENSGT00920000149187 #31 ENSGT00940000160798 #32 ENSGT00940000155565 ENSGT00940000158338 #35 ENSGT00940000155739 #33 ENSGT00390000018295 #34 ENSGT00390000006425 #36 Diprotodontia_a ANCESTRAL SPECIES 6 ENSGT00390000000684 ENSGT01050000244864.D ENSGT01050000244864.C ENSGT00940000158408 ENSGT00730000110915.b ENSGT01100000263570.B.y.a.b.b.f.a ENSGT01100000263570.B.y.a.b.b.f.b ENSGT01100000263570.B.y.a.b.a ENSGT01100000263570.B.y.a.a ENSGT00940000159402 ENSGT00940000160493 ENSGT00940000159284 ENSGT00950000183190.a.a.b ENSGT00670000098708 ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000162954.k.a ENSGT00940000162954.k.b.b ENSGT00820000127150 ENSGT00940000155863 ENSGT00390000006096.a.a ENSGT00940000161011 ENSGT00940000162954.k.b.a ENSGT00940000155444 ENSGT00390000018717.b.a.b ENSGT00940000153724.A ENSGT00940000159013 ENSGT00390000013693 ENSGT00940000153859.a ENSGT00940000156336 ENSGT00940000158856 Common wonbat DUPLICATION Common wonbat MODERN SPECIES 1021 ENSVURG00010007749 ENSVURG00010007759 CHD1L (ENSVURG00010007770) FMO5 (ENSVURG00010007787) PRKAB2 (ENSVURG00010007799) PDE4DIP (ENSVURG00010007887) SEC22B (ENSVURG00010008005) NOTCH2 (ENSVURG00010008016) #22 ENSVURG00010008068 ENSVURG00010008071 ZNF697 (ENSVURG00010008076) ENSVURG00010008087 HMGCS2 (ENSVURG00010008096) ENSVURG00010008116 ENSVURG00010008118 ENSVURG00010008135 HAO2 (ENSVURG00010008161) ENSVURG00010008169 WARS2 (ENSVURG00010008172) TBX15 (ENSVURG00010008181) SPAG17 (ENSVURG00010008196) WDR3 (ENSVURG00010008236) GDAP2 (ENSVURG00010008266) Common wonbat MODERN SPECIES 1047 ENSVURG00010006738 ENSVURG00010006484 ENSVURG00010006462 #11 ENSVURG00010006448 ENSVURG00010006216 #11 ENSVURG00010006194 ##14 ENSVURG00010006184 ENSVURG00010006135 ENSVURG00010006097 ENSVURG00010006071 HLA-DRA (ENSVURG00010006059) ENSVURG00010006002 ENSVURG00010005576 ENSVURG00010005536 ENSVURG00010005524 #19 ENSVURG00010005483 #22 PBX2 (ENSVURG00010005430) #24 AGER (ENSVURG00010005404) #25 RNF5 (ENSVURG00010005389) #26 AGPAT1 (ENSVURG00010005367) #27 EGFL8 (ENSVURG00010005359) #28 PPT2 (ENSVURG00010005336) #29 PRRT1 (ENSVURG00010005333) #30 FKBPL (ENSVURG00010005327) #31 ATF6B (ENSVURG00010005308) #32 TNXB (ENSVURG00010005278) CYP21A2 (ENSVURG00010004106) #35 ENSVURG00010004026 #33 ENSVURG00010004005 #34 DXO (ENSVURG00010003977) #36 SKIC2 (ENSVURG00010003919) #37 koala DUPLICATION koala MODERN SPECIES 4 ENSPCIG00000027174 GJA8 (ENSPCIG00000027167) GJA5 (ENSPCIG00000027164) ACP6 (ENSPCIG00000006969) BCL9 (ENSPCIG00000015994) ENSPCIG00000001575 ENSPCIG00000026096 ENSPCIG00000030411 ENSPCIG00000030410 ENSPCIG00000030409 FMO5 (ENSPCIG00000005342) PRKAB2 (ENSPCIG00000005330) PDE4DIP (ENSPCIG00000030408) ENSPCIG00000030406 SEC22B (ENSPCIG00000037279) NOTCH2 (ENSPCIG00000030297) #22 ENSPCIG00000037188 ENSPCIG00000009942 ZNF697 (ENSPCIG00000009940) ENSPCIG00000035747 HMGCS2 (ENSPCIG00000003274) REG4 (ENSPCIG00000023851) ENSPCIG00000023853 PHGDH (ENSPCIG00000023854) ENSPCIG00000023855 HAO2 (ENSPCIG00000009529) WARS2 (ENSPCIG00000029906) TBX15 (ENSPCIG00000032331) ENSPCIG00000037477 SPAG17 (ENSPCIG00000000977) WDR3 (ENSPCIG00000000938) koala MODERN SPECIES 254 ENSPCIG00000034822 ENSPCIG00000005091 #9 ENSPCIG00000001868 #10 ENSPCIG00000001804 ENSPCIG00000001719 ENSPCIG00000009007 #11 ENSPCIG00000008629 #9 ENSPCIG00000005151 ENSPCIG00000008365 ##14 Phci-DBA (ENSPCIG00000018833) Phci-DAA (ENSPCIG00000018830) ENSPCIG00000018822 ENSPCIG00000018816 ENSPCIG00000018813 #19 ENSPCIG00000018812 ENSPCIG00000018808 #22 GPSM3 (ENSPCIG00000018807) #23 PBX2 (ENSPCIG00000033599) #24 AGER (ENSPCIG00000018805) #25 RNF5 (ENSPCIG00000018804) #26 AGPAT1 (ENSPCIG00000018803) #27 ENSPCIG00000018801 #29 PRRT1 (ENSPCIG00000033881) #30 FKBPL (ENSPCIG00000023355) #31 ATF6B (ENSPCIG00000023354) #32 ENSPCIG00000033698 ENSPCIG00000034697 CYP21A2 (ENSPCIG00000018796) #35 ENSPCIG00000018795 #33 STK19 (ENSPCIG00000018794) #34 DXO (ENSPCIG00000018793) #36 Wallaby DUPLICATION Wallaby MODERN SPECIES 3976 NOTCH2 (ENSMEUG00000009678) #22 Wallaby MODERN SPECIES 10059 ENSMEUG00000014601 #22 Platypus DUPLICATION Platypus MODERN SPECIES 7 ATF6 (ENSOANG00000009735) DUSP12 (ENSOANG00000046788) PDZK1 (ENSOANG00000009734) ENSOANG00000009733 ENSOANG00000009732 GJA8 (ENSOANG00000037589) GJA5 (ENSOANG00000008998) ENSOANG00000002805 BCL9 (ENSOANG00000043707) CHD1L (ENSOANG00000003068) FMO5 (ENSOANG00000045449) PRKAB2 (ENSOANG00000003233) ENSOANG00000042306 ENSOANG00000049943 SEC22B (ENSOANG00000045488) ENSOANG00000011144 #22 ENSOANG00000005496 ENSOANG00000005495 ENSOANG00000047253 ENSOANG00000004530 ENSOANG00000046985 ENSOANG00000003271 ENSOANG00000040501 HMGCS2 (ENSOANG00000015590) PHGDH (ENSOANG00000015600) ZNF697 (ENSOANG00000050352) ENSOANG00000011957 HAO2 (ENSOANG00000043344) WARS2 (ENSOANG00000002254) TBX15 (ENSOANG00000047229) ENSOANG00000003073 Platypus MODERN SPECIES 88 TM4SF5 (ENSOANG00000045956) VMO1 (ENSOANG00000037759) ENSOANG00000036139 PSMB6 (ENSOANG00000046849) PLD2 (ENSOANG00000036774) MINK1 (ENSOANG00000045208) ENSOANG00000041183 SLC25A11 (ENSOANG00000036073) ENSOANG00000049188 ENSOANG00000039217 PFN1 (ENSOANG00000042707) ENO3 (ENSOANG00000003456) SPAG7 (ENSOANG00000041641) CAMTA2 (ENSOANG00000044371) KIF1C (ENSOANG00000002114) ENSOANG00000051279 #22 ENSOANG00000038167 #23 PBX2 (ENSOANG00000040716) #24 AGER (ENSOANG00000004412) #25 RNF5 (ENSOANG00000048452) #26 ENSOANG00000009967 #27 EGFL8 (ENSOANG00000029957) #28 PPT2 (ENSOANG00000038201) #29 PRRT1 (ENSOANG00000042428) #30 FKBPL (ENSOANG00000036168) #31 ATF6B (ENSOANG00000043339) #32 ENSOANG00000014402 ENSOANG00000000594 CYP21A2 (ENSOANG00000000301) #35 ENSOANG00000043996 #33 STK19 (ENSOANG00000041085) #34 Sauria ANCESTRAL SPECIES 7 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.p.b ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.a.b ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d ENSGT00940000160907 ENSGT00390000018059.b ENSGT01020000230412.A.c.b.d ENSGT00390000002659 ENSGT00940000163309 ENSGT00390000008608 Lepidosauria ANCESTRAL SPECIES 62 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.a.b ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00950000183190.b ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160907 ENSGT00390000018059.b ENSGT01020000230412.A.c.b.d ENSGT00390000002659 ENSGT00940000163309 ENSGT00390000008608 ENSGT00940000156906 tuatara MODERN SPECIES 746 GLE1 (ENSSPUG00000015268) ODF2 (ENSSPUG00000015294) PTGES2 (ENSSPUG00000015335) BBLN (ENSSPUG00000015338) CIZ1 (ENSSPUG00000015347) DNM1 (ENSSPUG00000015376) ENSSPUG00000015440 SWI5 (ENSSPUG00000015500) TRUB2 (ENSSPUG00000015515) COQ4 (ENSSPUG00000015526) SLC27A4 (ENSSPUG00000015536) URM1 (ENSSPUG00000015548) CFAP157 (ENSSPUG00000015602) PTRH1 (ENSSPUG00000000040) SEC22B (ENSSPUG00000000051) NOTCH2 (ENSSPUG00000000062) #22 HMGCS2 (ENSSPUG00000000080) PHGDH (ENSSPUG00000000175) ENSSPUG00000000396 ENSSPUG00000000416 PRKAB2 (ENSSPUG00000000426) ENSSPUG00000000433 SIM2 (ENSSPUG00000000454) ENSSPUG00000000498 ENSSPUG00000000519 PIGP (ENSSPUG00000000596) ENSSPUG00000000603 VPS26C (ENSSPUG00000000615) DYRK1A (ENSSPUG00000000621) KCNJ6 (ENSSPUG00000000631) KCNJ15 (ENSSPUG00000000634) Archelosauria ANCESTRAL SPECIES 9 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00950000185229 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b Archosauria ANCESTRAL SPECIES 27 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00510000046975.b.q ENSGT00390000007598 ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b Australian saltwater crocodile MODERN SPECIES 28 ATF6 (ENSCPRG00005001010) OLFML2B (ENSCPRG00005001039) HSD17B7 (ENSCPRG00005001052) DDR2 (ENSCPRG00005001059) UAP1 (ENSCPRG00005001099) UHMK1 (ENSCPRG00005001107) ENSCPRG00005001113 SPATA46 (ENSCPRG00005001118) TMEM121 (ENSCPRG00005001148) TEDC1 (ENSCPRG00005001201) CRIP1 (ENSCPRG00005001226) CRIP2 (ENSCPRG00005001228) MTA1 (ENSCPRG00005001248) PACS2 (ENSCPRG00005001267) SEC22B (ENSCPRG00005001287) NOTCH2 (ENSCPRG00005001488) #22 ENSCPRG00005003087 ENSCPRG00005003091 HMGCS2 (ENSCPRG00005003094) PHGDH (ENSCPRG00005003122) PDE4DIP (ENSCPRG00005003176) PRKAB2 (ENSCPRG00005003576) ENSCPRG00005003653 ENSCPRG00005003917 PLPP6 (ENSCPRG00005003927) FAM78B (ENSCPRG00005003933) PRDX6 (ENSCPRG00005003937) TADA1 (ENSCPRG00005003943) ENSCPRG00005003957 FASLG (ENSCPRG00005003963) SUCO (ENSCPRG00005003969) Aves ANCESTRAL SPECIES 7 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160836.d ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 African ostrich MODERN SPECIES 539 MTA1 (ENSSCUG00000005681) ENSSCUG00000005680 PACS2 (ENSSCUG00000005675) SEC22B (ENSSCUG00000005669) NOTCH2 (ENSSCUG00000005617) #22 ENSSCUG00000005576 PRKAB2 (ENSSCUG00000005574) ENSSCUG00000005572 PLPP6 (ENSSCUG00000005571) FAM78B (ENSSCUG00000005569) TADA1 (ENSSCUG00000005568) ENSSCUG00000005566 ENSSCUG00000005565 PRDX6 (ENSSCUG00000005563) FASLG (ENSSCUG00000005560) SUCO (ENSSCUG00000005555) PIGC (ENSSCUG00000005549) DNM3 (ENSSCUG00000005537) METTL13 (ENSSCUG00000005523) VAMP4 (ENSSCUG00000005519) Neognathae ANCESTRAL SPECIES 8 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160836.d ENSGT00940000160493.a ENSGT00940000160493.b ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 Neognathae_b ANCESTRAL SPECIES 10 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00950000183190.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT00950000185631 Neognathae_c ANCESTRAL SPECIES 7 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00950000183190.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b Golden eagle MODERN SPECIES 3 OLFML2B (ENSACCG00020014565) HSD17B7 (ENSACCG00020014578) DDR2 (ENSACCG00020014598) UAP1 (ENSACCG00020014625) UHMK1 (ENSACCG00020014642) ENSACCG00020014657 ENSACCG00020014674 SPATA46 (ENSACCG00020014688) TMEM121 (ENSACCG00020014698) TEDC1 (ENSACCG00020014715) CRIP1 (ENSACCG00020014733) CRIP2 (ENSACCG00020014742) MTA1 (ENSACCG00020014761) PACS2 (ENSACCG00020014813) SEC22B (ENSACCG00020014855) NOTCH2 (ENSACCG00020015594) #22 REG4 (ENSACCG00020016143) HMGCS2 (ENSACCG00020016155) PHGDH (ENSACCG00020016168) ENSACCG00020016188 ENSACCG00020016199 ENSACCG00020016209 PRKAB2 (ENSACCG00020016217) ENSACCG00020016234 ENSACCG00020016245 PLPP6 (ENSACCG00020016252) FAM78B (ENSACCG00020016256) PRDX6 (ENSACCG00020016260) TADA1 (ENSACCG00020000569) ENSACCG00020000599 ENSACCG00020000626 Kakapo MODERN SPECIES 25 OLFML2B (ENSSHBG00005018329) HSD17B7 (ENSSHBG00005018325) DDR2 (ENSSHBG00005018322) UAP1 (ENSSHBG00005018318) UHMK1 (ENSSHBG00005018314) ENSSHBG00005018311 SPATA46 (ENSSHBG00005018309) ENSSHBG00005018306 TMEM121 (ENSSHBG00005018303) TEDC1 (ENSSHBG00005018300) CRIP1 (ENSSHBG00005018297) CRIP2 (ENSSHBG00005018294) MTA1 (ENSSHBG00005018289) PACS2 (ENSSHBG00005018285) SEC22B (ENSSHBG00005018280) NOTCH2 (ENSSHBG00005006669) #22 ENSSHBG00005005608 HMGCS2 (ENSSHBG00005005589) PHGDH (ENSSHBG00005005502) ENSSHBG00005005481 ENSSHBG00005005457 ENSSHBG00005005436 ENSSHBG00005005423 PRKAB2 (ENSSHBG00005005402) ENSSHBG00005005380 ENSSHBG00005005361 ENSSHBG00005005329 ENSSHBG00005005304 ENSSHBG00005005286 ENSSHBG00005005270 ENSSHBG00005005259 Passeriformes ANCESTRAL SPECIES 8 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000168828 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT01040000240999 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b Great tit MODERN SPECIES 28 TMEM121 (ENSPMJG00000009932) TEDC1 (ENSPMJG00000009937) ENSPMJG00000009940 CRIP1 (ENSPMJG00000009942) CRIP2 (ENSPMJG00000009944) ENSPMJG00000009959 ENSPMJG00000009961 PACS2 (ENSPMJG00000009962) SEC22B (ENSPMJG00000009966) NOTCH2 (ENSPMJG00000009978) #22 ENSPMJG00000010110 HMGCS2 (ENSPMJG00000010112) PHGDH (ENSPMJG00000010114) ENSPMJG00000010118 ENSPMJG00000010127 ENSPMJG00000010128 PRKAB2 (ENSPMJG00000010129) FMO5 (ENSPMJG00000010131) PLPP6 (ENSPMJG00000010456) FAM78B (ENSPMJG00000010457) PRDX6 (ENSPMJG00000010460) TADA1 (ENSPMJG00000010476) ENSPMJG00000010477 FASLG (ENSPMJG00000010479) SUCO (ENSPMJG00000010480) Passeriformes_d ANCESTRAL SPECIES 9 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000168828 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT01040000240999 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b Flycatcher DUPLICATION Flycatcher MODERN SPECIES 27 UAP1 (ENSFALG00000003533) UHMK1 (ENSFALG00000025386) ENSFALG00000024755 ENSFALG00000027377 ENSFALG00000003550 TMEM121 (ENSFALG00000014517) ENSFALG00000003562 CRIP1 (ENSFALG00000026248) ENSFALG00000026183 ENSFALG00000023674 CRIP2 (ENSFALG00000028733) MTA1 (ENSFALG00000003592) ENSFALG00000023096 PACS2 (ENSFALG00000003599) SEC22B (ENSFALG00000003606) ENSFALG00000025163 #22 ENSFALG00000003644 #22 ENSFALG00000003721 HMGCS2 (ENSFALG00000026416) PHGDH (ENSFALG00000003733) ENSFALG00000003755 ENSFALG00000003783 ENSFALG00000015215 ENSFALG00000028558 ENSFALG00000003798 PRDX6 (ENSFALG00000003804) ENSFALG00000003815 ENSFALG00000014546 ENSFALG00000027355 FASLG (ENSFALG00000026011) SUCO (ENSFALG00000007801) Flycatcher MODERN SPECIES 27 UHMK1 (ENSFALG00000025386) ENSFALG00000024755 ENSFALG00000027377 ENSFALG00000003550 TMEM121 (ENSFALG00000014517) ENSFALG00000003562 CRIP1 (ENSFALG00000026248) ENSFALG00000026183 ENSFALG00000023674 CRIP2 (ENSFALG00000028733) MTA1 (ENSFALG00000003592) ENSFALG00000023096 PACS2 (ENSFALG00000003599) SEC22B (ENSFALG00000003606) ENSFALG00000025163 #22 ENSFALG00000003644 #22 ENSFALG00000003721 HMGCS2 (ENSFALG00000026416) PHGDH (ENSFALG00000003733) ENSFALG00000003755 ENSFALG00000003783 ENSFALG00000015215 ENSFALG00000028558 ENSFALG00000003798 PRDX6 (ENSFALG00000003804) ENSFALG00000003815 ENSFALG00000014546 ENSFALG00000027355 FASLG (ENSFALG00000026011) SUCO (ENSFALG00000007801) PIGC (ENSFALG00000014545) Passeriformes_g ANCESTRAL SPECIES 41 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT01040000244588 ENSGT00940000168828 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT01040000240999 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b ENSGT00390000005496 Medium ground finch MODERN SPECIES 124 ATF6 (ENSGFOG00000012818) OLFML2B (ENSGFOG00000012843) HSD17B7 (ENSGFOG00000012847) DDR2 (ENSGFOG00000012852) UAP1 (ENSGFOG00000012862) UHMK1 (ENSGFOG00000012866) ENSGFOG00000012870 ENSGFOG00000012875 ENSGFOG00000012879 TMEM121 (ENSGFOG00000012880) TEDC1 (ENSGFOG00000012882) CRIP1 (ENSGFOG00000012885) CRIP2 (ENSGFOG00000012890) MTA1 (ENSGFOG00000012922) PACS2 (ENSGFOG00000013363) NOTCH2 (ENSGFOG00000009054) #22 ENSGFOG00000010309 HMGCS2 (ENSGFOG00000010314) PHGDH (ENSGFOG00000010318) PDE4DIP (ENSGFOG00000010333) PRKAB2 (ENSGFOG00000010357) ENSGFOG00000010364 ENSGFOG00000010369 PLPP6 (ENSGFOG00000010372) PRDX6 (ENSGFOG00000010392) TADA1 (ENSGFOG00000010402) FASLG (ENSGFOG00000010414) SUCO (ENSGFOG00000010429) PIGC (ENSGFOG00000010454) DNM3 (ENSGFOG00000010502) METTL13 (ENSGFOG00000011854) Passeroidea ANCESTRAL SPECIES 40 ENSGT00940000159221 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000168828 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT01040000240999 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b ENSGT00390000005496 Zebra finch MODERN SPECIES 30 ENSTGUG00000019528 RGS5 (ENSTGUG00000019064) ENSTGUG00000017040 ATF6 (ENSTGUG00000017057) OLFML2B (ENSTGUG00000017073) HSD17B7 (ENSTGUG00000017081) DDR2 (ENSTGUG00000017130) ENSTGUG00000027710 UHMK1 (ENSTGUG00000021984) TEDC1 (ENSTGUG00000027622) CRIP1 (ENSTGUG00000029314) CRIP2 (ENSTGUG00000021671) MTA1 (ENSTGUG00000017196) PACS2 (ENSTGUG00000017216) SEC22B (ENSTGUG00000024370) NOTCH2 (ENSTGUG00000017231) #22 ENSTGUG00000017242 HMGCS2 (ENSTGUG00000017243) PHGDH (ENSTGUG00000022462) ENSTGUG00000022295 ENSTGUG00000017245 ENSTGUG00000017248 PRKAB2 (ENSTGUG00000028771) FMO5 (ENSTGUG00000017252) PLPP6 (ENSTGUG00000029432) FAM78B (ENSTGUG00000017258) PRDX6 (ENSTGUG00000027567) TADA1 (ENSTGUG00000026809) ENSTGUG00000027132 FASLG (ENSTGUG00000017264) SUCO (ENSTGUG00000017265) Common canary DUPLICATION Common canary MODERN SPECIES 101 ENSSCAG00000007124 #22 SEC22B (ENSSCAG00000007118) PACS2 (ENSSCAG00000007109) MTA1 (ENSSCAG00000006298) CRIP2 (ENSSCAG00000006164) CRIP1 (ENSSCAG00000006145) TEDC1 (ENSSCAG00000006139) ENSSCAG00000006109 #22 ENSSCAG00000006096 HMGCS2 (ENSSCAG00000006090) PHGDH (ENSSCAG00000006080) Common canary MODERN SPECIES 101 PHGDH (ENSSCAG00000006080) HMGCS2 (ENSSCAG00000006090) ENSSCAG00000006096 ENSSCAG00000006109 #22 TEDC1 (ENSSCAG00000006139) CRIP1 (ENSSCAG00000006145) CRIP2 (ENSSCAG00000006164) MTA1 (ENSSCAG00000006298) PACS2 (ENSSCAG00000007109) SEC22B (ENSSCAG00000007118) ENSSCAG00000007124 #22 Galloanserae ANCESTRAL SPECIES 8 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00390000007598 ENSGT00940000164616 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT00950000185631 Anatidae ANCESTRAL SPECIES 5 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00390000007598 ENSGT00940000164616 ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT01040000240999 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT01100000263594 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00940000172066 ENSGT01060000248544.a.a.b.a.b Pink-footed goose MODERN SPECIES 84 OLFML2B (ENSABRG00000022960) HSD17B7 (ENSABRG00000022959) DDR2 (ENSABRG00000022958) UAP1 (ENSABRG00000022957) UHMK1 (ENSABRG00000022956) ENSABRG00000022955 ENSABRG00000022954 TMEM121 (ENSABRG00000022951) TEDC1 (ENSABRG00000022949) CRIP1 (ENSABRG00000022948) CRIP2 (ENSABRG00000022947) MTA1 (ENSABRG00000022946) ENSABRG00000022945 PACS2 (ENSABRG00000022944) SEC22B (ENSABRG00000022943) NOTCH2 (ENSABRG00000022942) #22 HMGCS2 (ENSABRG00000022941) PHGDH (ENSABRG00000022940) ENSABRG00000022939 PRKAB2 (ENSABRG00000022938) ENSABRG00000022937 ENSABRG00000022936 PLPP6 (ENSABRG00000022935) FAM78B (ENSABRG00000022934) PRDX6 (ENSABRG00000022933) TADA1 (ENSABRG00000022932) ENSABRG00000022931 FASLG (ENSABRG00000022930) SUCO (ENSABRG00000022929) PIGC (ENSABRG00000022928) DNM3 (ENSABRG00000022835) Duck MODERN SPECIES 26 OLFML2B (ENSAPLG00000014054) HSD17B7 (ENSAPLG00000014241) DDR2 (ENSAPLG00000014258) UAP1 (ENSAPLG00000014521) UHMK1 (ENSAPLG00000014799) SPATA46 (ENSAPLG00000025054) ENSAPLG00000023414 ENSAPLG00000014905 TMEM121 (ENSAPLG00000013683) TEDC1 (ENSAPLG00000014968) CRIP1 (ENSAPLG00000014982) CRIP2 (ENSAPLG00000015110) MTA1 (ENSAPLG00000015316) PACS2 (ENSAPLG00000015577) SEC22B (ENSAPLG00000015847) NOTCH2 (ENSAPLG00000015861) #22 HMGCS2 (ENSAPLG00000016193) ENSAPLG00000031083 PHGDH (ENSAPLG00000027527) ENSAPLG00000020859 ENSAPLG00000024527 ENSAPLG00000016209 ENSAPLG00000030221 PRKAB2 (ENSAPLG00000016261) ENSAPLG00000030988 ENSAPLG00000016309 PLPP6 (ENSAPLG00000029646) FAM78B (ENSAPLG00000016430) PRDX6 (ENSAPLG00000016432) TADA1 (ENSAPLG00000005434) ENSAPLG00000029878 Phasianidae ANCESTRAL SPECIES 7 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT01070000257182 ENSGT00510000046975.b.q ENSGT00940000168828 ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00390000015127 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b Japanese quail MODERN SPECIES 26 ATF6 (ENSCJPG00005021217) OLFML2B (ENSCJPG00005021218) HSD17B7 (ENSCJPG00005021219) DDR2 (ENSCJPG00005021220) UAP1 (ENSCJPG00005021222) UHMK1 (ENSCJPG00005021223) ENSCJPG00005021224 ENSCJPG00005021225 TMEM121 (ENSCJPG00005021226) TEDC1 (ENSCJPG00005021227) CRIP1 (ENSCJPG00005021228) CRIP2 (ENSCJPG00005021229) MTA1 (ENSCJPG00005021230) PACS2 (ENSCJPG00005021231) SEC22B (ENSCJPG00005021243) NOTCH2 (ENSCJPG00005021260) #22 HMGCS2 (ENSCJPG00005021290) ENSCJPG00005021292 ENSCJPG00005021293 ENSCJPG00005021294 PRKAB2 (ENSCJPG00005021295) ENSCJPG00005021296 ENSCJPG00005021297 PLPP6 (ENSCJPG00005021298) FAM78B (ENSCJPG00005021299) PRDX6 (ENSCJPG00005021300) TADA1 (ENSCJPG00005021301) ENSCJPG00005021303 APOBEC4 (ENSCJPG00005021304) ARPC5 (ENSCJPG00005021305) NCF2 (ENSCJPG00005021306) Phasianidae_b ANCESTRAL SPECIES 7 ENSGT00940000157757 ENSGT00390000013340 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT01070000257182 ENSGT00510000046975.b.q ENSGT00940000168828 ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00940000161011 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00940000159284 ENSGT00940000160493.b ENSGT00940000160493.a ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00390000015127 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b Chicken MODERN SPECIES 37 OLFML2B (ENSGALG00010012958) HSD17B7 (ENSGALG00010012978) DDR2 (ENSGALG00010012982) UAP1 (ENSGALG00010013004) UHMK1 (ENSGALG00010013027) ENSGALG00010013036 ENSGALG00010013044 ENSGALG00010013056 TMEM121 (ENSGALG00010013137) TEDC1 (ENSGALG00010013144) CRIP1 (ENSGALG00010013158) CRIP2 (ENSGALG00010013212) MTA1 (ENSGALG00010013251) PACS2 (ENSGALG00010013265) SEC22B (ENSGALG00010013282) NOTCH2 (ENSGALG00010013323) #22 REG4 (ENSGALG00010013342) HMGCS2 (ENSGALG00010013346) PHGDH (ENSGALG00010013380) PDE4DIP (ENSGALG00010013429) PRKAB2 (ENSGALG00010013451) ENSGALG00010014898 ENSGALG00010013472 PLPP6 (ENSGALG00010013486) FAM78B (ENSGALG00010013511) PRDX6 (ENSGALG00010013528) TADA1 (ENSGALG00010013553) ENSGALG00010013566 ENSGALG00010013573 FASLG (ENSGALG00010013583) SUCO (ENSGALG00010014928) Turkey DUPLICATION Turkey MODERN SPECIES 1 ENSMGAG00000018521 DNM3 (ENSMGAG00000021855) ENSMGAG00000004375 SUCO (ENSMGAG00000004336) ENSMGAG00000020431 ENSMGAG00000022425 ENSMGAG00000004387 ENSMGAG00000004398 ENSMGAG00000019588 ENSMGAG00000019333 ENSMGAG00000004417 ENSMGAG00000004411 ENSMGAG00000004481 ENSMGAG00000004460 ENSMGAG00000019615 ENSMGAG00000004604 #22 ENSMGAG00000004592 ENSMGAG00000004570 ENSMGAG00000004553 ENSMGAG00000021888 #22 ENSMGAG00000004771 ENSMGAG00000004881 ENSMGAG00000004786 ENSMGAG00000004954 ENSMGAG00000017246 ENSMGAG00000021550 ENSMGAG00000018164 ENSMGAG00000005017 ENSMGAG00000005039 ENSMGAG00000005025 ENSMGAG00000005043 Turkey MODERN SPECIES 1 ENSMGAG00000020431 ENSMGAG00000022425 ENSMGAG00000004387 ENSMGAG00000004398 ENSMGAG00000019588 ENSMGAG00000019333 ENSMGAG00000004417 ENSMGAG00000004411 ENSMGAG00000004481 ENSMGAG00000004460 ENSMGAG00000019615 ENSMGAG00000004604 #22 ENSMGAG00000004592 ENSMGAG00000004570 ENSMGAG00000004553 ENSMGAG00000021888 #22 ENSMGAG00000004771 ENSMGAG00000004881 ENSMGAG00000004786 ENSMGAG00000004954 ENSMGAG00000017246 ENSMGAG00000021550 ENSMGAG00000018164 ENSMGAG00000005017 ENSMGAG00000005039 ENSMGAG00000005025 ENSMGAG00000005043 UAP1 (ENSMGAG00000005073) ENSMGAG00000005133 ENSMGAG00000005095 ENSMGAG00000005185 Cryptodira ANCESTRAL SPECIES 8 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.p.b ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b ENSGT00950000183190.a.a.a.a ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d.n.b ENSGT00940000160907 ENSGT00390000018059.b ENSGT00550000074794 ENSGT00390000011644 ENSGT00950000185229 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b ENSGT00390000013502.b Chinese turtle MODERN SPECIES 1006 SEC22B (ENSPSIG00000004331) NOTCH2 (ENSPSIG00000012458) #22 Testudinoidea ANCESTRAL SPECIES 5 ENSGT00940000154842.a.b ENSGT00940000153464.A.b ENSGT00940000157769 ENSGT00940000164616 ENSGT00390000007598 ENSGT00510000046975.b.p.b ENSGT00510000046975.b.q ENSGT00390000003866.a.b ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b.mc.a ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b.mc.b ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d.n.b ENSGT00940000160907 ENSGT00390000018059.b ENSGT00940000164279 ENSGT00390000011644 ENSGT00950000185229 ENSGT00950000185631 Testudinidae ANCESTRAL SPECIES 23 ENSGT00940000158683.b ENSGT01030000234573.B.c.a ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b.mc.a ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.b.mc.b ENSGT00940000159284 ENSGT00940000160493 ENSGT00940000160836.d.n.b ENSGT00940000160907 ENSGT00390000018059.b ENSGT00940000164279 ENSGT00390000011644 ENSGT00950000185229 ENSGT00950000185631 ENSGT01060000248544.a.a.b.a.b Goode s thornscrub tortoise MODERN SPECIES 22 HSD17B7 (ENSGEVG00005004562) DDR2 (ENSGEVG00005004593) ENSGEVG00005004621 UAP1 (ENSGEVG00005004650) UHMK1 (ENSGEVG00005004702) ENSGEVG00005004724 SPATA46 (ENSGEVG00005004742) ENSGEVG00005004767 ENSGEVG00005004835 ENSGEVG00005004856 CRIP1 (ENSGEVG00005004878) CRIP2 (ENSGEVG00005004907) MTA1 (ENSGEVG00005005055) PACS2 (ENSGEVG00005005436) SEC22B (ENSGEVG00005005497) NOTCH2 (ENSGEVG00005005781) #22 HMGCS2 (ENSGEVG00005006695) PHGDH (ENSGEVG00005006807) ENSGEVG00005006836 ENSGEVG00005006881 ENSGEVG00005006969 PRKAB2 (ENSGEVG00005006996) ENSGEVG00005007072 ENSGEVG00005007391 PLPP6 (ENSGEVG00005007664) FAM78B (ENSGEVG00005007688) ENSGEVG00005007702 TADA1 (ENSGEVG00005007719) ENSGEVG00005007733 ENSGEVG00005007755 FASLG (ENSGEVG00005007773) Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 610 ENSCABG00000009753 SEC22B (ENSCABG00000009761) NOTCH2 (ENSCABG00000009788) #22 HMGCS2 (ENSCABG00000010265) PHGDH (ENSCABG00000010286) ENSCABG00000010287 ENSCABG00000010288 Abingdon island giant tortoise MODERN SPECIES 2413 EHMT2 (ENSCABG00000010125) ENSCABG00000010179 ENSCABG00000010181 #30 ENSCABG00000010182 ATF6B (ENSCABG00000010183) #32 ENSCABG00000010186 ENSCABG00000010188 ENSCABG00000010189 #22 Emydidae ANCESTRAL SPECIES 24 ENSGT00390000011474 ENSGT00940000162342 ENSGT00940000158683.b ENSGT00990000205100.A.a ENSGT00390000003866.a.b ENSGT01030000234573.B.c.a ENSGT01030000234573.B.d ENSGT00950000183209.b.b ENSGT00940000156349 ENSGT00940000155030 #22 ENSGT00390000006096.a.a ENSGT00940000155863 ENSGT00950000183190.a.a.b.mc.a ENSGT00950000183190.a.a.b.nc ENSGT00950000183190.a.a.a.a ENSGT00950000183190.a.a.b.mc.b ENSGT00940000159284 ENSGT00940000160836.d.n.b ENSGT00940000160907 ENSGT00390000018059.b ENSGT01030000236207.a.a ENSGT00940000164279 ENSGT00390000011644 ENSGT00950000185229 ENSGT00950000185631 painted turtle DUPLICATION painted turtle MODERN SPECIES 2399 SEC22B (ENSCPBG00000005072) NOTCH2 (ENSCPBG00000005048) #22 HMGCS2 (ENSCPBG00000004143) PHGDH (ENSCPBG00000004080) PDE4DIP (ENSCPBG00000003991) PRKAB2 (ENSCPBG00000003950) ENSCPBG00000003724 ENSCPBG00000003668 ENSCPBG00000003645 PLPP6 (ENSCPBG00000003610) FAM78B (ENSCPBG00000003588) ENSCPBG00000003579 ENSCPBG00000003569 TADA1 (ENSCPBG00000003554) painted turtle DUPLICATION painted turtle MODERN SPECIES 1138 ENSCPBG00000012284 ENSCPBG00000012271 ENSCPBG00000012257 SLC44A4 (ENSCPBG00000012245) PPT2 (ENSCPBG00000012239) #29 ENSCPBG00000012236 PRRT1 (ENSCPBG00000012234) #30 FKBPL (ENSCPBG00000012233) #31 ENSCPBG00000012229 #32 ENSCPBG00000012227 #22 ENSCPBG00000012226 #22 ENSCPBG00000012224 #23 ENSCPBG00000012216 AGPAT1 (ENSCPBG00000012213) #27 C2 (ENSCPBG00000012206) ZBTB12 (ENSCPBG00000012202) EHMT2 (ENSCPBG00000001809) ENSCPBG00000001366 NEU1 (ENSCPBG00000001280) STK19 (ENSCPBG00000001249) #34 DXO (ENSCPBG00000001233) #36 SKIC2 (ENSCPBG00000000343) #37 NELFE (ENSCPBG00000000225) CFB (ENSCPBG00000000208) painted turtle MODERN SPECIES 1138 ENSCPBG00000012284 ENSCPBG00000012271 ENSCPBG00000012257 SLC44A4 (ENSCPBG00000012245) PPT2 (ENSCPBG00000012239) #29 ENSCPBG00000012236 PRRT1 (ENSCPBG00000012234) #30 FKBPL (ENSCPBG00000012233) #31 ENSCPBG00000012229 #32 ENSCPBG00000012227 #22 ENSCPBG00000012226 #22 ENSCPBG00000012224 #23 ENSCPBG00000012216 AGPAT1 (ENSCPBG00000012213) #27 C2 (ENSCPBG00000012206) ZBTB12 (ENSCPBG00000012202) EHMT2 (ENSCPBG00000001809) ENSCPBG00000001366 NEU1 (ENSCPBG00000001280) STK19 (ENSCPBG00000001249) #34 DXO (ENSCPBG00000001233) #36 SKIC2 (ENSCPBG00000000343) #37 NELFE (ENSCPBG00000000225) CFB (ENSCPBG00000000208) Three-toed box turtle DUPLICATION Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 99 ENSTMTG00000021828 ENSTMTG00000021835 ENSTMTG00000021854 ENSTMTG00000003100 ENSTMTG00000003114 ENSTMTG00000003131 ENSTMTG00000003148 ENSTMTG00000003168 ENSTMTG00000003196 ENSTMTG00000003204 ENSTMTG00000003218 ENSTMTG00000003278 ENSTMTG00000003429 ENSTMTG00000004645 ENSTMTG00000004791 ENSTMTG00000005012 #22 ENSTMTG00000006780 ENSTMTG00000006788 ENSTMTG00000006821 ENSTMTG00000006853 ENSTMTG00000006935 ENSTMTG00000006948 ENSTMTG00000006966 ENSTMTG00000006986 ENSTMTG00000007003 ENSTMTG00000007012 ENSTMTG00000007029 ENSTMTG00000007061 ENSTMTG00000007079 ENSTMTG00000007099 ENSTMTG00000007113 Three-toed box turtle MODERN SPECIES 97 ENSTMTG00000007504 ENSTMTG00000007570 ENSTMTG00000008089 ENSTMTG00000008120 ENSTMTG00000008130 SPATA46 (ENSTMTG00000008141) ENSTMTG00000008146 ENSTMTG00000008159 ENSTMTG00000008174 ENSTMTG00000008183 ENSTMTG00000008196 ENSTMTG00000008227 ENSTMTG00000008560 ENSTMTG00000013707 ENSTMTG00000013777 ENSTMTG00000014264 #22 ENSTMTG00000019942 ENSTMTG00000019952 ENSTMTG00000019960 ENSTMTG00000019969 ENSTMTG00000020060 ENSTMTG00000020072 ENSTMTG00000020079 ENSTMTG00000020090 ENSTMTG00000020094 ENSTMTG00000020101 ENSTMTG00000020105 ENSTMTG00000020115 ENSTMTG00000020118 ENSTMTG00000020122 ENSTMTG00000020132 Three-toed box turtle MODERN SPECIES 2412 ENSTMTG00000012058 #22